Articles | Volume 17, issue 15
https://doi.org/10.5194/bg-17-4119-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Special issue:
https://doi.org/10.5194/bg-17-4119-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
14 Aug 2020
Research article |
| 14 Aug 2020
| 14 Aug 2020
Can ocean community production and respiration be determined by measuring high-frequency oxygen profiles from autonomous floats?
Christopher Gordon
Department of Oceanography, Dalhousie University, 1355 Oxford Street, Halifax B3H 4R2, Nova Scotia, Canada
Department of Oceanography, Dalhousie University, 1355 Oxford Street, Halifax B3H 4R2, Nova Scotia, Canada
Clark Richards
Bedford Institute of Oceanography, Fisheries and Oceans Canada, Dartmouth, NS B2Y 4A2, Canada
Lynn K. Shay
Department of Ocean Sciences, Rosenstiel School of Marine Sciences, University of Miami, 4600 Rickenbacker Causeway, Miami, FL 33149, USA
Jodi K. Brewster
Department of Ocean Sciences, Rosenstiel School of Marine Sciences, University of Miami, 4600 Rickenbacker Causeway, Miami, FL 33149, USA
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Bin Wang, Katja Fennel, Liuqian Yu, and Christopher Gordon
Biogeosciences, 17, 4059–4074, https://doi.org/10.5194/bg-17-4059-2020, https://doi.org/10.5194/bg-17-4059-2020, 2020
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We assess trade-offs between different types of biological observations, specifically satellite ocean color and BGC-Argo profiles and the benefits of combining both for optimizing a biogeochemical model of the Gulf of Mexico. Using all available observations leads to significant improvements in observed and unobserved variables (including primary production and C export). Our results highlight the significant benefits of BGC-Argo measurements for biogeochemical model optimization and validation.
G. Snider, C. L. Weagle, R. V. Martin, A. van Donkelaar, K. Conrad, D. Cunningham, C. Gordon, M. Zwicker, C. Akoshile, P. Artaxo, N. X. Anh, J. Brook, J. Dong, R. M. Garland, R. Greenwald, D. Griffith, K. He, B. N. Holben, R. Kahn, I. Koren, N. Lagrosas, P. Lestari, Z. Ma, J. Vanderlei Martins, E. J. Quel, Y. Rudich, A. Salam, S. N. Tripathi, C. Yu, Q. Zhang, Y. Zhang, M. Brauer, A. Cohen, M. D. Gibson, and Y. Liu
Atmos. Meas. Tech., 8, 505–521, https://doi.org/10.5194/amt-8-505-2015, https://doi.org/10.5194/amt-8-505-2015, 2015
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We have initiated a global network of ground-level monitoring stations to measure concentrations of fine aerosols in urban environments. Our findings include major ions species, total mass, and total scatter at three wavelengths. Results will be used to further evaluate and enhance satellite remote sensing estimates.
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
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We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
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This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Li-Qing Jiang, Adam V. Subhas, Daniela Basso, Katja Fennel, and Jean-Pierre Gattuso
State Planet, 2-oae2023, 13, https://doi.org/10.5194/sp-2-oae2023-13-2023, https://doi.org/10.5194/sp-2-oae2023-13-2023, 2023
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This paper provides comprehensive guidelines for ocean alkalinity enhancement (OAE) researchers on archiving their metadata and data. It includes data standards for various OAE studies and a universal metadata template. Controlled vocabularies for terms like alkalinization methods are included. These guidelines also apply to ocean acidification data.
Katja Fennel, Matthew C. Long, Christopher Algar, Brendan Carter, David Keller, Arnaud Laurent, Jann Paul Mattern, Ruth Musgrave, Andreas Oschlies, Josiane Ostiguy, Jaime B. Palter, and Daniel B. Whitt
State Planet, 2-oae2023, 9, https://doi.org/10.5194/sp-2-oae2023-9-2023, https://doi.org/10.5194/sp-2-oae2023-9-2023, 2023
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This paper describes biogeochemical models and modelling techniques for applications related to ocean alkalinity enhancement (OAE) research. Many of the most pressing OAE-related research questions cannot be addressed by observation alone but will require a combination of skilful models and observations. We present illustrative examples with references to further information; describe limitations, caveats, and future research needs; and provide practical recommendations.
Stefania A. Ciliberti, Enrique Alvarez Fanjul, Jay Pearlman, Kirsten Wilmer-Becker, Pierre Bahurel, Fabrice Ardhuin, Alain Arnaud, Mike Bell, Segolene Berthou, Laurent Bertino, Arthur Capet, Eric Chassignet, Stefano Ciavatta, Mauro Cirano, Emanuela Clementi, Gianpiero Cossarini, Gianpaolo Coro, Stuart Corney, Fraser Davidson, Marie Drevillon, Yann Drillet, Renaud Dussurget, Ghada El Serafy, Katja Fennel, Marcos Garcia Sotillo, Patrick Heimbach, Fabrice Hernandez, Patrick Hogan, Ibrahim Hoteit, Sudheer Joseph, Simon Josey, Pierre-Yves Le Traon, Simone Libralato, Marco Mancini, Pascal Matte, Angelique Melet, Yasumasa Miyazawa, Andrew M. Moore, Antonio Novellino, Andrew Porter, Heather Regan, Laia Romero, Andreas Schiller, John Siddorn, Joanna Staneva, Cecile Thomas-Courcoux, Marina Tonani, Jose Maria Garcia-Valdecasas, Jennifer Veitch, Karina von Schuckmann, Liying Wan, John Wilkin, and Romane Zufic
State Planet, 1-osr7, 2, https://doi.org/10.5194/sp-1-osr7-2-2023, https://doi.org/10.5194/sp-1-osr7-2-2023, 2023
Benjamin Richaud, Katja Fennel, Eric C. J. Oliver, Michael D. DeGrandpre, Timothée Bourgeois, Xianmin Hu, and Youyu Lu
The Cryosphere, 17, 2665–2680, https://doi.org/10.5194/tc-17-2665-2023, https://doi.org/10.5194/tc-17-2665-2023, 2023
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Sea ice is a dynamic carbon reservoir. Its seasonal growth and melt modify the carbonate chemistry in the upper ocean, with consequences for the Arctic Ocean carbon sink. Yet, the importance of this process is poorly quantified. Using two independent approaches, this study provides new methods to evaluate the error in air–sea carbon flux estimates due to the lack of biogeochemistry in ice in earth system models. Those errors range from 5 % to 30 %, depending on the model and climate projection.
Arnaud Laurent, Haiyan Zhang, and Katja Fennel
Biogeosciences, 19, 5893–5910, https://doi.org/10.5194/bg-19-5893-2022, https://doi.org/10.5194/bg-19-5893-2022, 2022
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The Changjiang is the main terrestrial source of nutrients to the East China Sea (ECS). Nutrient delivery to the ECS has been increasing since the 1960s, resulting in low oxygen (hypoxia) during phytoplankton decomposition in summer. River phosphorus (P) has increased less than nitrogen, and therefore, despite the large nutrient delivery, phytoplankton growth can be limited by the lack of P. Here, we investigate this link between P limitation, phytoplankton production/decomposition, and hypoxia.
Krysten Rutherford, Katja Fennel, Dariia Atamanchuk, Douglas Wallace, and Helmuth Thomas
Biogeosciences, 18, 6271–6286, https://doi.org/10.5194/bg-18-6271-2021, https://doi.org/10.5194/bg-18-6271-2021, 2021
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Using a regional model of the northwestern North Atlantic shelves in combination with a surface water time series and repeat transect observations, we investigate surface CO2 variability on the Scotian Shelf. The study highlights a strong seasonal cycle in shelf-wide pCO2 and spatial variability throughout the summer months driven by physical events. The simulated net flux of CO2 on the Scotian Shelf is out of the ocean, deviating from the global air–sea CO2 flux trend in continental shelves.
Bin Wang, Katja Fennel, and Liuqian Yu
Ocean Sci., 17, 1141–1156, https://doi.org/10.5194/os-17-1141-2021, https://doi.org/10.5194/os-17-1141-2021, 2021
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We demonstrate that even sparse BGC-Argo profiles can substantially improve biogeochemical prediction via a priori model tuning. By assimilating satellite surface chlorophyll and physical observations, subsurface distributions of physical properties and nutrients were improved immediately. The improvement of subsurface chlorophyll was modest initially but was greatly enhanced after adjusting the parameterization for light attenuation through further a priori tuning.
Thomas S. Bianchi, Madhur Anand, Chris T. Bauch, Donald E. Canfield, Luc De Meester, Katja Fennel, Peter M. Groffman, Michael L. Pace, Mak Saito, and Myrna J. Simpson
Biogeosciences, 18, 3005–3013, https://doi.org/10.5194/bg-18-3005-2021, https://doi.org/10.5194/bg-18-3005-2021, 2021
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Better development of interdisciplinary ties between biology, geology, and chemistry advances biogeochemistry through (1) better integration of contemporary (or rapid) evolutionary adaptation to predict changing biogeochemical cycles and (2) universal integration of data from long-term monitoring sites in terrestrial, aquatic, and human systems that span broad geographical regions for use in modeling.
Arnaud Laurent, Katja Fennel, and Angela Kuhn
Biogeosciences, 18, 1803–1822, https://doi.org/10.5194/bg-18-1803-2021, https://doi.org/10.5194/bg-18-1803-2021, 2021
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CMIP5 and CMIP6 models, and a high-resolution regional model, were evaluated by comparing historical simulations with observations in the northwest North Atlantic, a climate-sensitive and biologically productive ocean margin region. Many of the CMIP models performed poorly for biological properties. There is no clear link between model resolution and skill in the global models, but there is an overall improvement in performance in CMIP6 from CMIP5. The regional model performed best.
Haiyan Zhang, Katja Fennel, Arnaud Laurent, and Changwei Bian
Biogeosciences, 17, 5745–5761, https://doi.org/10.5194/bg-17-5745-2020, https://doi.org/10.5194/bg-17-5745-2020, 2020
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In coastal seas, low oxygen, which is detrimental to coastal ecosystems, is increasingly caused by man-made nutrients from land. This is especially so near mouths of major rivers, including the Changjiang in the East China Sea. Here a simulation model is used to identify the main factors determining low-oxygen conditions in the region. High river discharge is identified as the prime cause, while wind and intrusions of open-ocean water modulate the severity and extent of low-oxygen conditions.
Bin Wang, Katja Fennel, Liuqian Yu, and Christopher Gordon
Biogeosciences, 17, 4059–4074, https://doi.org/10.5194/bg-17-4059-2020, https://doi.org/10.5194/bg-17-4059-2020, 2020
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We assess trade-offs between different types of biological observations, specifically satellite ocean color and BGC-Argo profiles and the benefits of combining both for optimizing a biogeochemical model of the Gulf of Mexico. Using all available observations leads to significant improvements in observed and unobserved variables (including primary production and C export). Our results highlight the significant benefits of BGC-Argo measurements for biogeochemical model optimization and validation.
Fabian Große, Katja Fennel, Haiyan Zhang, and Arnaud Laurent
Biogeosciences, 17, 2701–2714, https://doi.org/10.5194/bg-17-2701-2020, https://doi.org/10.5194/bg-17-2701-2020, 2020
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In the East China Sea, hypoxia occurs frequently from spring to fall due to high primary production and subsequent decomposition of organic matter. Nitrogen inputs from the Changjiang and the open ocean have been suggested to contribute to hypoxia formation. We used a numerical modelling approach to quantify the relative contributions of these nitrogen sources. We found that the Changjiang dominates, which suggests that nitrogen management in the watershed would improve oxygen conditions.
Liuqian Yu, Katja Fennel, Bin Wang, Arnaud Laurent, Keith R. Thompson, and Lynn K. Shay
Ocean Sci., 15, 1801–1814, https://doi.org/10.5194/os-15-1801-2019, https://doi.org/10.5194/os-15-1801-2019, 2019
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We present a first direct comparison of nonidentical versus identical twin approaches for an ocean data assimilation system. We show that the identical twin approach overestimates the value of assimilating satellite observations and undervalues the benefit of assimilating temperature and salinity profiles. Misleading assessments such as undervaluing the impact of observational assets are problematic and can lead to misguided decisions on balancing investments among different observing assets.
Katja Fennel, Simone Alin, Leticia Barbero, Wiley Evans, Timothée Bourgeois, Sarah Cooley, John Dunne, Richard A. Feely, Jose Martin Hernandez-Ayon, Xinping Hu, Steven Lohrenz, Frank Muller-Karger, Raymond Najjar, Lisa Robbins, Elizabeth Shadwick, Samantha Siedlecki, Nadja Steiner, Adrienne Sutton, Daniela Turk, Penny Vlahos, and Zhaohui Aleck Wang
Biogeosciences, 16, 1281–1304, https://doi.org/10.5194/bg-16-1281-2019, https://doi.org/10.5194/bg-16-1281-2019, 2019
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We review and synthesize available information on coastal ocean carbon fluxes around North America (NA). There is overwhelming evidence, compiled and discussed here, that the NA coastal margins act as a sink. Our synthesis shows the great diversity in processes driving carbon fluxes in different coastal regions, highlights remaining gaps in observations and models, and discusses current and anticipated future trends with respect to carbon fluxes and acidification.
Till J. W. Wagner, Fiamma Straneo, Clark G. Richards, Donald A. Slater, Laura A. Stevens, Sarah B. Das, and Hanumant Singh
The Cryosphere, 13, 911–925, https://doi.org/10.5194/tc-13-911-2019, https://doi.org/10.5194/tc-13-911-2019, 2019
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This study shows how complex and varied the processes are that determine the frontal position of tidewater glaciers. Rather than uniform melt or calving rates, a single (medium-sized) glacier can feature regions that retreat almost exclusively due to melting and other regions that retreat only due to calving. This has far-reaching consequences for our understanding of how glaciers retreat or advance.
Angela M. Kuhn, Katja Fennel, and Ilana Berman-Frank
Biogeosciences, 15, 7379–7401, https://doi.org/10.5194/bg-15-7379-2018, https://doi.org/10.5194/bg-15-7379-2018, 2018
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Recent studies demonstrate that marine N2 fixation can be carried out without light. However, direct measurements of N2 fixation in dark environments are relatively scarce. This study uses a model that represents biogeochemical cycles at a deep-ocean location in the Gulf of Aqaba (Red Sea). Different model versions are used to test assumptions about N2 fixers. Relaxing light limitation for marine N2 fixers improved the similarity between model results and observations of deep nitrate and oxygen.
Krysten Rutherford and Katja Fennel
Ocean Sci., 14, 1207–1221, https://doi.org/10.5194/os-14-1207-2018, https://doi.org/10.5194/os-14-1207-2018, 2018
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Using a regional model of the northwestern North Atlantic shelves, we calculate transport timescales and pathways in order to understand the transport processes that underlie the rapid oxygen loss, air–sea CO2 flux, and supply of plankton seed populations on the Scotian Shelf. Study results highlight the limited connectivity between the Scotian Shelf and adjacent slope waters; instead, the dominant southwestward currents bring Grand Banks and Gulf of St. Lawrence waters to the Scotian Shelf.
Katja Fennel and Arnaud Laurent
Biogeosciences, 15, 3121–3131, https://doi.org/10.5194/bg-15-3121-2018, https://doi.org/10.5194/bg-15-3121-2018, 2018
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Increasing human-derived nutrient inputs to coastal oceans lead to spreading dead zones around the world. Here a biogeochemical model for the northern Gulf of Mexico, where nutrients from the Mississippi River create the largest dead zone in North American coastal waters, is used for the first time to show the effects of single and dual nutrient reductions of nitrogen (N) and phosphorus (P). Significant reductions in N or N&P load would be required to significantly reduce hypoxia in this system.
Jonathan Lemay, Helmuth Thomas, Susanne E. Craig, William J. Burt, Katja Fennel, and Blair J. W. Greenan
Biogeosciences, 15, 2111–2123, https://doi.org/10.5194/bg-15-2111-2018, https://doi.org/10.5194/bg-15-2111-2018, 2018
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We report a detailed mechanistic investigation of the impact of Hurricane Arthur on the CO2 cycling on the Scotian Shelf. We can show that in contrast to common thinking, the deepening of the surface during the summer months can lead to increased CO2 uptake as carbon-poor waters from subsurface water are brought up to the surface. Only during prolonged storm events is the deepening of the mixed layer strong enough to bring the (expected) carbon-rich water to the surface.
Julia M. Moriarty, Courtney K. Harris, Katja Fennel, Marjorie A. M. Friedrichs, Kehui Xu, and Christophe Rabouille
Biogeosciences, 14, 1919–1946, https://doi.org/10.5194/bg-14-1919-2017, https://doi.org/10.5194/bg-14-1919-2017, 2017
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In coastal aquatic environments, resuspension of sediment and organic material from the seabed into the overlying water can impact biogeochemistry. Here, we used a novel modeling approach to quantify this impact for the Rhône River delta. In the model, resuspension increased oxygen consumption during individual resuspension events, and when results were averaged over 2 months. This implies that observations and models that only represent calm conditions may underestimate net oxygen consumption.
Zuo Xue, Ruoying He, Katja Fennel, Wei-Jun Cai, Steven Lohrenz, Wei-Jen Huang, Hanqin Tian, Wei Ren, and Zhengchen Zang
Biogeosciences, 13, 4359–4377, https://doi.org/10.5194/bg-13-4359-2016, https://doi.org/10.5194/bg-13-4359-2016, 2016
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In this study we used a state-of-the-science coupled physical–biogeochemical model to simulate and examine temporal and spatial variability of sea surface CO2 concentration in the Gulf of Mexico. Our model revealed the Gulf was a net CO2 sink with a flux of 1.11 ± 0.84 × 1012 mol C yr−1. We also found that biological uptake was the primary driver making the Gulf an overall CO2 sink and that the carbon flux in the northern Gulf was very susceptible to changes in river inputs.
A. Laurent, K. Fennel, R. Wilson, J. Lehrter, and R. Devereux
Biogeosciences, 13, 77–94, https://doi.org/10.5194/bg-13-77-2016, https://doi.org/10.5194/bg-13-77-2016, 2016
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In low oxygen environments, the lack of oxygen influences sediment biogeochemistry and in turn sediment-water fluxes. These nonlinear interactions are often missing from biogeochemical circulation models because sediment models are computationally expensive. A method for parameterizing realistic sediment-water fluxes is presented and applied to the Mississippi River Dead Zone where high primary production, stimulated by excess nutrient loads, promotes low bottom water conditions in summer.
L. Yu, K. Fennel, A. Laurent, M. C. Murrell, and J. C. Lehrter
Biogeosciences, 12, 2063–2076, https://doi.org/10.5194/bg-12-2063-2015, https://doi.org/10.5194/bg-12-2063-2015, 2015
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Our study suggests that a combination of physical processes and sediment oxygen consumption determine the spatial extent and temporal dynamics of hypoxia on the Louisiana shelf. In summer, stratification isolates oxygen-rich surface waters from hypoxic bottom waters; oxygen outgasses to the atmosphere at this time. A large fraction of primary production occurs below the pycnocline in summer, but this primary production does not strongly affect the spatial extent of hypoxic bottom waters.
G. Snider, C. L. Weagle, R. V. Martin, A. van Donkelaar, K. Conrad, D. Cunningham, C. Gordon, M. Zwicker, C. Akoshile, P. Artaxo, N. X. Anh, J. Brook, J. Dong, R. M. Garland, R. Greenwald, D. Griffith, K. He, B. N. Holben, R. Kahn, I. Koren, N. Lagrosas, P. Lestari, Z. Ma, J. Vanderlei Martins, E. J. Quel, Y. Rudich, A. Salam, S. N. Tripathi, C. Yu, Q. Zhang, Y. Zhang, M. Brauer, A. Cohen, M. D. Gibson, and Y. Liu
Atmos. Meas. Tech., 8, 505–521, https://doi.org/10.5194/amt-8-505-2015, https://doi.org/10.5194/amt-8-505-2015, 2015
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We have initiated a global network of ground-level monitoring stations to measure concentrations of fine aerosols in urban environments. Our findings include major ions species, total mass, and total scatter at three wavelengths. Results will be used to further evaluate and enhance satellite remote sensing estimates.
K.-K. Liu, C.-K. Kang, T. Kobari, H. Liu, C. Rabouille, and K. Fennel
Biogeosciences, 11, 7061–7075, https://doi.org/10.5194/bg-11-7061-2014, https://doi.org/10.5194/bg-11-7061-2014, 2014
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This paper provides background info on the East China Sea, Japan/East Sea and South China Sea and highlights major findings in the special issue on their biogeochemical conditions and ecosystem functions. The three seas are subject to strong impacts from human activities and/or climate forcing. Because these continental margins sustain arguably some of the most productive marine ecosystems in the world, changes in these stressed ecosystems may threaten the livelihood of a large human population.
Z. Xue, R. He, K. Fennel, W.-J. Cai, S. Lohrenz, and C. Hopkinson
Biogeosciences, 10, 7219–7234, https://doi.org/10.5194/bg-10-7219-2013, https://doi.org/10.5194/bg-10-7219-2013, 2013
W. J. Burt, H. Thomas, K. Fennel, and E. Horne
Biogeosciences, 10, 53–66, https://doi.org/10.5194/bg-10-53-2013, https://doi.org/10.5194/bg-10-53-2013, 2013
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Biogeochemistry: Open Ocean
Phosphomonoesterase and phosphodiesterase activities in the eastern Mediterranean in two contrasting seasonal situations
Net primary production annual maxima in the North Atlantic projected to shift in the 21st century
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Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary
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Linking northeastern North Pacific oxygen changes to upstream surface outcrop variations
Short-term response of Emiliania huxleyi growth and morphology to abrupt salinity stress
Underestimation of multi-decadal global O2 loss due to an optimal interpolation method
Reviews and syntheses: expanding the global coverage of gross primary production and net community production measurements using Biogeochemical-Argo floats
Characteristics of surface physical and biogeochemical parameters within mesoscale eddies in the Southern Ocean
Seasonal dynamics and annual budget of dissolved inorganic carbon in the northwestern Mediterranean deep-convection region
Assessing the impact of CO2 equilibrated ocean alkalinity enhancement on microbial metabolic rates in an oligotrophic system
The fingerprint of climate variability on the surface ocean cycling of iron and its isotopes
Reconstructing the ocean's mesopelagic zone carbon budget: sensitivity and estimation of parameters associated with prokaryotic remineralization
Evolution of oxygen and stratification in the North Pacific Ocean in CMIP6 Earth System Models
Seasonal cycles of biogeochemical fluxes in the Scotia Sea, Southern Ocean: a stable isotope approach
Absence of photophysiological response to iron addition in autumn phytoplankton in the Antarctic sea-ice zone
Optimal parameters for the ocean's nutrient, carbon, and oxygen cycles compensate for circulation biases but replumb the biological pump
Importance of multiple sources of iron for the upper-ocean biogeochemistry over the northern Indian Ocean
Exploring the role of different data types and timescales in the quality of marine biogeochemical model calibration
All about nitrite: exploring nitrite sources and sinks in the eastern tropical North Pacific oxygen minimum zone
Fossil coccolith morphological attributes as a new proxy for deep ocean carbonate chemistry
Reconstructing ocean carbon storage with CMIP6 Earth system models and synthetic Argo observations
Using machine learning and Biogeochemical-Argo (BGC-Argo) floats to assess biogeochemical models and optimize observing system design
The representation of alkalinity and the carbonate pump from CMIP5 to CMIP6 Earth system models and implications for the carbon cycle
Model estimates of metazoans' contributions to the biological carbon pump
Tracing differences in iron supply to the Mid-Atlantic Ridge valley between hydrothermal vent sites: implications for the addition of iron to the deep ocean
Nitrite cycling in the primary nitrite maxima of the eastern tropical North Pacific
Hotspots and drivers of compound marine heatwaves and low net primary production extremes
Ecosystem impacts of marine heat waves in the northeast Pacific
Tracing the role of Arctic shelf processes in Si and N cycling and export through the Fram Strait: insights from combined silicon and nitrate isotopes
Controls on the relative abundances and rates of nitrifying microorganisms in the ocean
The response of diazotrophs to nutrient amendment in the South China Sea and western North Pacific
Influence of GEOTRACES data distribution and misfit function choice on objective parameter retrieval in a marine zinc cycle model
Physiological flexibility of phytoplankton impacts modelled chlorophyll and primary production across the North Pacific Ocean
Observation-constrained estimates of the global ocean carbon sink from Earth system models
Early winter barium excess in the southern Indian Ocean as an annual remineralisation proxy (GEOTRACES GIPr07 cruise)
Controlling factors on the global distribution of a representative marine non-cyanobacterial diazotroph phylotype (Gamma A)
Summer trends and drivers of sea surface fCO2 and pH changes observed in the southern Indian Ocean over the last two decades (1998–2019)
Global nutrient cycling by commercially targeted marine fish
Major processes of the dissolved cobalt cycle in the North and equatorial Pacific Ocean
The impact of the South-East Madagascar Bloom on the oceanic CO2 sink
Nitrite regeneration in the oligotrophic Atlantic Ocean
Bridging the gaps between particulate backscattering measurements and modeled particulate organic carbon in the ocean
Biological production in two contrasted regions of the Mediterranean Sea during the oligotrophic period: an estimate based on the diel cycle of optical properties measured by BioGeoChemical-Argo profiling floats
Acidification of the Nordic Seas
Reconstruction of global surface ocean pCO2 using region-specific predictors based on a stepwise FFNN regression algorithm
Biogeochemical controls on ammonium accumulation in the surface layer of the Southern Ocean
Oxygen export to the deep ocean following Labrador Sea Water formation
N2 fixation in the Mediterranean Sea related to the composition of the diazotrophic community and impact of dust under present and future environmental conditions
France Van Wambeke, Pascal Conan, Mireille Pujo-Pay, Vincent Taillandier, Olivier Crispi, Alexandra Pavlidou, Sandra Nunige, Morgane Didry, Christophe Salmeron, and Elvira Pulido-Villena
Biogeosciences, 21, 2621–2640, https://doi.org/10.5194/bg-21-2621-2024, https://doi.org/10.5194/bg-21-2621-2024, 2024
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Phosphomonoesterase (PME) and phosphodiesterase (PDE) activities over the epipelagic zone are described in the eastern Mediterranean Sea in winter and autumn. The types of concentration kinetics obtained for PDE (saturation at 50 µM, high Km, high turnover times) compared to those of PME (saturation at 1 µM, low Km, low turnover times) are discussed in regard to the possible inequal distribution of PDE and PME in the size continuum of organic material and accessibility to phosphodiesters.
Jenny Hieronymus, Magnus Hieronymus, Matthias Gröger, Jörg Schwinger, Raffaele Bernadello, Etienne Tourigny, Valentina Sicardi, Itzel Ruvalcaba Baroni, and Klaus Wyser
Biogeosciences, 21, 2189–2206, https://doi.org/10.5194/bg-21-2189-2024, https://doi.org/10.5194/bg-21-2189-2024, 2024
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The timing of the net primary production annual maxima in the North Atlantic in the period 1750–2100 is investigated using two Earth system models and the high-emissions scenario SSP5-8.5. It is found that, for most of the region, the annual maxima occur progressively earlier, with the most change occurring after the year 2000. Shifts in the seasonality of the primary production may impact the entire ecosystem, which highlights the need for long-term monitoring campaigns in this area.
Nicole M. Travis, Colette L. Kelly, and Karen L. Casciotti
Biogeosciences, 21, 1985–2004, https://doi.org/10.5194/bg-21-1985-2024, https://doi.org/10.5194/bg-21-1985-2024, 2024
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We conducted experimental manipulations of light level on microbial communities from the primary nitrite maximum. Overall, while individual microbial processes have different directions and magnitudes in their response to increasing light, the net community response is a decline in nitrite production with increasing light. We conclude that while increased light may decrease net nitrite production, high-light conditions alone do not exclude nitrification from occurring in the surface ocean.
Zoë Rebecca van Kemenade, Zeynep Erdem, Ellen Christine Hopmans, Jaap Smede Sinninghe Damsté, and Darci Rush
Biogeosciences, 21, 1517–1532, https://doi.org/10.5194/bg-21-1517-2024, https://doi.org/10.5194/bg-21-1517-2024, 2024
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The California Current system (CCS) hosts the eastern subtropical North Pacific oxygen minimum zone (ESTNP OMZ). This study shows anaerobic ammonium oxidizing (anammox) bacteria cause a loss of bioavailable nitrogen (N) in the ESTNP OMZ throughout the late Quaternary. Anammox occurred during both glacial and interglacial periods and was driven by the supply of organic matter and changes in ocean currents. These findings may have important consequences for biogeochemical models of the CCS.
Cathy Wimart-Rousseau, Tobias Steinhoff, Birgit Klein, Henry Bittig, and Arne Körtzinger
Biogeosciences, 21, 1191–1211, https://doi.org/10.5194/bg-21-1191-2024, https://doi.org/10.5194/bg-21-1191-2024, 2024
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The marine CO2 system can be measured independently and continuously by BGC-Argo floats since numerous pH sensors have been developed to suit these autonomous measurements platforms. By applying the Argo correction routines to float pH data acquired in the subpolar North Atlantic Ocean, we report the uncertainty and lack of objective criteria associated with the choice of the reference method as well the reference depth for the pH correction.
Sabine Mecking and Kyla Drushka
Biogeosciences, 21, 1117–1133, https://doi.org/10.5194/bg-21-1117-2024, https://doi.org/10.5194/bg-21-1117-2024, 2024
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This study investigates whether northeastern North Pacific oxygen changes may be caused by surface density changes in the northwest as water moves along density horizons from the surface into the subsurface ocean. A correlation is found with a lag that about matches the travel time of water from the northwest to the northeast. Salinity is the main driver causing decadal changes in surface density, whereas salinity and temperature contribute about equally to long-term declining density trends.
Rosie M. Sheward, Christina Gebühr, Jörg Bollmann, and Jens O. Herrle
EGUsphere, https://doi.org/10.5194/egusphere-2024-349, https://doi.org/10.5194/egusphere-2024-349, 2024
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How quickly do marine microorganisms respond to salinity stress? Our experiments with the calcifying marine plankton Emiliania huxleyi show that growth and cell morphology responded to salinity stress within as little as 24–48 hours, demonstrating that morphology and calcification is sensitive to salinity over a range of timescales. Our results have implications for understanding the short-term role of E. huxleyi in biogeochemical cycles and size-based paleoproxies for salinity.
Takamitsu Ito, Hernan E. Garcia, Zhankun Wang, Shoshiro Minobe, Matthew C. Long, Just Cebrian, James Reagan, Tim Boyer, Christopher Paver, Courtney Bouchard, Yohei Takano, Seth Bushinsky, Ahron Cervania, and Curtis A. Deutsch
Biogeosciences, 21, 747–759, https://doi.org/10.5194/bg-21-747-2024, https://doi.org/10.5194/bg-21-747-2024, 2024
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This study aims to estimate how much oceanic oxygen has been lost and its uncertainties. One major source of uncertainty comes from the statistical gap-filling methods. Outputs from Earth system models are used to generate synthetic observations where oxygen data are extracted from the model output at the location and time of historical oceanographic cruises. Reconstructed oxygen trend is approximately two-thirds of the true trend.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
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This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Qian Liu, Yingjie Liu, and Xiaofeng Li
Biogeosciences, 20, 4857–4874, https://doi.org/10.5194/bg-20-4857-2023, https://doi.org/10.5194/bg-20-4857-2023, 2023
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In the Southern Ocean, abundant eddies behave opposite to our expectations. That is, anticyclonic (cyclonic) eddies are cold (warm). By investigating the variations of physical and biochemical parameters in eddies, we find that abnormal eddies have unique and significant effects on modulating the parameters. This study fills a gap in understanding the effects of abnormal eddies on physical and biochemical parameters in the Southern Ocean.
Caroline Ulses, Claude Estournel, Patrick Marsaleix, Karline Soetaert, Marine Fourrier, Laurent Coppola, Dominique Lefèvre, Franck Touratier, Catherine Goyet, Véronique Guglielmi, Fayçal Kessouri, Pierre Testor, and Xavier Durrieu de Madron
Biogeosciences, 20, 4683–4710, https://doi.org/10.5194/bg-20-4683-2023, https://doi.org/10.5194/bg-20-4683-2023, 2023
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Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, considered to be a hotspot of biodiversity and climate change. In this study, we investigate the seasonal and annual budget of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, Joaquín Ortiz, Steve D. Archer, Andrea Ludwig, and Ulf Riebesell
EGUsphere, https://doi.org/10.5194/egusphere-2023-2409, https://doi.org/10.5194/egusphere-2023-2409, 2023
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Our planet is facing a climate crisis. Scientists are working on innovative solutions that will aid in capturing the hard to abate emissions before it is too late. Exciting research reveals that ocean alkalinity enhancement, a key climate change mitigation strategy, doesn't harm phytoplankton, the cornerstone of marine ecosystems. Through meticulous study, we may have uncovered a positive relationship: up to a specific limit, enhancing ocean alkalinity boosts photosynthesis by certain species.
Daniela König and Alessandro Tagliabue
Biogeosciences, 20, 4197–4212, https://doi.org/10.5194/bg-20-4197-2023, https://doi.org/10.5194/bg-20-4197-2023, 2023
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Using model simulations, we show that natural and anthropogenic changes in the global climate leave a distinct fingerprint in the isotopic signatures of iron in the surface ocean. We find that these climate effects on iron isotopes are often caused by the redistribution of iron from different external sources to the ocean, due to changes in ocean currents, and by changes in algal growth, which take up iron. Thus, isotopes may help detect climate-induced changes in iron supply and algal uptake.
Chloé Baumas, Robin Fuchs, Marc Garel, Jean-Christophe Poggiale, Laurent Memery, Frédéric A. C. Le Moigne, and Christian Tamburini
Biogeosciences, 20, 4165–4182, https://doi.org/10.5194/bg-20-4165-2023, https://doi.org/10.5194/bg-20-4165-2023, 2023
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Through the sink of particles in the ocean, carbon (C) is exported and sequestered when reaching 1000 m. Attempts to quantify C exported vs. C consumed by heterotrophs have increased. Yet most of the conducted estimations have led to C demands several times higher than C export. The choice of parameters greatly impacts the results. As theses parameters are overlooked, non-accurate values are often used. In this study we show that C budgets can be well balanced when using appropriate values.
Lyuba Novi, Annalisa Bracco, Takamitsu Ito, and Yohei Takano
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-129, https://doi.org/10.5194/bg-2023-129, 2023
Revised manuscript accepted for BG
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We explored the relationship between oxygen and stratification in the North Pacific Ocean, using a combination of data mining and machine learning. We used isopycnic potential vorticity (IPV) as an indicator to quantify ocean ventilation and we analyzed its predictability, a strong O2-IPV connection and predictability for IPV in the tropical Pacific. This open new routes to monitor ocean O2 through few observational sites co-located with more abundant IPV measurements in the tropical Pacific.
Anna Belcher, Sian F. Henley, Katharine Hendry, Marianne Wootton, Lisa Friberg, Ursula Dallman, Tong Wang, Christopher Coath, and Clara Manno
Biogeosciences, 20, 3573–3591, https://doi.org/10.5194/bg-20-3573-2023, https://doi.org/10.5194/bg-20-3573-2023, 2023
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The oceans play a crucial role in the uptake of atmospheric carbon dioxide, particularly the Southern Ocean. The biological pumping of carbon from the surface to the deep ocean is key to this. Using sediment trap samples from the Scotia Sea, we examine biogeochemical fluxes of carbon, nitrogen, and biogenic silica and their stable isotope compositions. We find phytoplankton community structure and physically mediated processes are important controls on particulate fluxes to the deep ocean.
Asmita Singh, Susanne Fietz, Sandy J. Thomalla, Nicolas Sanchez, Murat V. Ardelan, Sébastien Moreau, Hanna M. Kauko, Agneta Fransson, Melissa Chierici, Saumik Samanta, Thato N. Mtshali, Alakendra N. Roychoudhury, and Thomas J. Ryan-Keogh
Biogeosciences, 20, 3073–3091, https://doi.org/10.5194/bg-20-3073-2023, https://doi.org/10.5194/bg-20-3073-2023, 2023
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Despite the scarcity of iron in the Southern Ocean, seasonal blooms occur due to changes in nutrient and light availability. Surprisingly, during an autumn bloom in the Antarctic sea-ice zone, the results from incubation experiments showed no significant photophysiological response of phytoplankton to iron addition. This suggests that ambient iron concentrations were sufficient, challenging the notion of iron deficiency in the Southern Ocean through extended iron-replete post-bloom conditions.
Benoît Pasquier, Mark Holzer, Matthew A. Chamberlain, Richard J. Matear, Nathaniel L. Bindoff, and François W. Primeau
Biogeosciences, 20, 2985–3009, https://doi.org/10.5194/bg-20-2985-2023, https://doi.org/10.5194/bg-20-2985-2023, 2023
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Modeling the ocean's carbon and oxygen cycles accurately is challenging. Parameter optimization improves the fit to observed tracers but can introduce artifacts in the biological pump. Organic-matter production and subsurface remineralization rates adjust to compensate for circulation biases, changing the pathways and timescales with which nutrients return to the surface. Circulation biases can thus strongly alter the system’s response to ecological change, even when parameters are optimized.
Priyanka Banerjee
Biogeosciences, 20, 2613–2643, https://doi.org/10.5194/bg-20-2613-2023, https://doi.org/10.5194/bg-20-2613-2023, 2023
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This study shows that atmospheric deposition is the most important source of iron to the upper northern Indian Ocean for phytoplankton growth. This is followed by iron from continental-shelf sediment. Phytoplankton increase following iron addition is possible only with high background levels of nitrate. Vertical mixing is the most important physical process supplying iron to the upper ocean in this region throughout the year. The importance of ocean currents in supplying iron varies seasonally.
Iris Kriest, Julia Getzlaff, Angela Landolfi, Volkmar Sauerland, Markus Schartau, and Andreas Oschlies
Biogeosciences, 20, 2645–2669, https://doi.org/10.5194/bg-20-2645-2023, https://doi.org/10.5194/bg-20-2645-2023, 2023
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Global biogeochemical ocean models are often subjectively assessed and tuned against observations. We applied different strategies to calibrate a global model against observations. Although the calibrated models show similar tracer distributions at the surface, they differ in global biogeochemical fluxes, especially in global particle flux. Simulated global volume of oxygen minimum zones varies strongly with calibration strategy and over time, rendering its temporal extrapolation difficult.
John C. Tracey, Andrew R. Babbin, Elizabeth Wallace, Xin Sun, Katherine L. DuRussel, Claudia Frey, Donald E. Martocello III, Tyler Tamasi, Sergey Oleynik, and Bess B. Ward
Biogeosciences, 20, 2499–2523, https://doi.org/10.5194/bg-20-2499-2023, https://doi.org/10.5194/bg-20-2499-2023, 2023
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Nitrogen (N) is essential for life; thus, its availability plays a key role in determining marine productivity. Using incubations of seawater spiked with a rare form of N measurable on a mass spectrometer, we quantified microbial pathways that determine marine N availability. The results show that pathways that recycle N have higher rates than those that result in its loss from biomass and present new evidence for anaerobic nitrite oxidation, a process long thought to be strictly aerobic.
Amanda Gerotto, Hongrui Zhang, Renata Hanae Nagai, Heather M. Stoll, Rubens César Lopes Figueira, Chuanlian Liu, and Iván Hernández-Almeida
Biogeosciences, 20, 1725–1739, https://doi.org/10.5194/bg-20-1725-2023, https://doi.org/10.5194/bg-20-1725-2023, 2023
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Based on the analysis of the response of coccolithophores’ morphological attributes in a laboratory dissolution experiment and surface sediment samples from the South China Sea, we proposed that the thickness shape (ks) factor of fossil coccoliths together with the normalized ks variation, which is the ratio of the standard deviation of ks (σ) over the mean ks (σ/ks), is a robust and novel proxy to reconstruct past changes in deep ocean carbon chemistry.
Katherine E. Turner, Doug M. Smith, Anna Katavouta, and Richard G. Williams
Biogeosciences, 20, 1671–1690, https://doi.org/10.5194/bg-20-1671-2023, https://doi.org/10.5194/bg-20-1671-2023, 2023
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We present a new method for reconstructing ocean carbon using climate models and temperature and salinity observations. To test this method, we reconstruct modelled carbon using synthetic observations consistent with current sampling programmes. Sensitivity tests show skill in reconstructing carbon trends and variability within the upper 2000 m. Our results indicate that this method can be used for a new global estimate for ocean carbon content.
Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
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Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
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Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Jérôme Pinti, Tim DeVries, Tommy Norin, Camila Serra-Pompei, Roland Proud, David A. Siegel, Thomas Kiørboe, Colleen M. Petrik, Ken H. Andersen, Andrew S. Brierley, and André W. Visser
Biogeosciences, 20, 997–1009, https://doi.org/10.5194/bg-20-997-2023, https://doi.org/10.5194/bg-20-997-2023, 2023
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Large numbers of marine organisms such as zooplankton and fish perform daily vertical migration between the surface (at night) and the depths (in the daytime). This fascinating migration is important for the carbon cycle, as these organisms actively bring carbon to depths where it is stored away from the atmosphere for a long time. Here, we quantify the contributions of different animals to this carbon drawdown and storage and show that fish are important to the biological carbon pump.
Alastair J. M. Lough, Alessandro Tagliabue, Clément Demasy, Joseph A. Resing, Travis Mellett, Neil J. Wyatt, and Maeve C. Lohan
Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, https://doi.org/10.5194/bg-20-405-2023, 2023
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Iron is a key nutrient for ocean primary productivity. Hydrothermal vents are a source of iron to the oceans, but the size of this source is poorly understood. This study examines the variability in iron inputs between hydrothermal vents in different geological settings. The vents studied release different amounts of Fe, resulting in plumes with similar dissolved iron concentrations but different particulate concentrations. This will help to refine modelling of iron-limited ocean productivity.
Nicole M. Travis, Colette L. Kelly, Margaret R. Mulholland, and Karen L. Casciotti
Biogeosciences, 20, 325–347, https://doi.org/10.5194/bg-20-325-2023, https://doi.org/10.5194/bg-20-325-2023, 2023
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The primary nitrite maximum is a ubiquitous upper ocean feature where nitrite accumulates, but we still do not understand its formation and the co-occurring microbial processes involved. Using correlative methods and rates measurements, we found strong spatial patterns between environmental conditions and depths of the nitrite maxima, but not the maximum concentrations. Nitrification was the dominant source of nitrite, with occasional high nitrite production from phytoplankton near the coast.
Natacha Le Grix, Jakob Zscheischler, Keith B. Rodgers, Ryohei Yamaguchi, and Thomas L. Frölicher
Biogeosciences, 19, 5807–5835, https://doi.org/10.5194/bg-19-5807-2022, https://doi.org/10.5194/bg-19-5807-2022, 2022
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Compound events threaten marine ecosystems. Here, we investigate the potentially harmful combination of marine heatwaves with low phytoplankton productivity. Using satellite-based observations, we show that these compound events are frequent in the low latitudes. We then investigate the drivers of these compound events using Earth system models. The models share similar drivers in the low latitudes but disagree in the high latitudes due to divergent factors limiting phytoplankton production.
Abigale M. Wyatt, Laure Resplandy, and Adrian Marchetti
Biogeosciences, 19, 5689–5705, https://doi.org/10.5194/bg-19-5689-2022, https://doi.org/10.5194/bg-19-5689-2022, 2022
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Marine heat waves (MHWs) are a frequent event in the northeast Pacific, with a large impact on the region's ecosystems. Large phytoplankton in the North Pacific Transition Zone are greatly affected by decreased nutrients, with less of an impact in the Alaskan Gyre. For small phytoplankton, MHWs increase the spring small phytoplankton population in both regions thanks to reduced light limitation. In both zones, this results in a significant decrease in the ratio of large to small phytoplankton.
Margot C. F. Debyser, Laetitia Pichevin, Robyn E. Tuerena, Paul A. Dodd, Antonia Doncila, and Raja S. Ganeshram
Biogeosciences, 19, 5499–5520, https://doi.org/10.5194/bg-19-5499-2022, https://doi.org/10.5194/bg-19-5499-2022, 2022
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We focus on the exchange of key nutrients for algae production between the Arctic and Atlantic oceans through the Fram Strait. We show that the export of dissolved silicon here is controlled by the availability of nitrate which is influenced by denitrification on Arctic shelves. We suggest that any future changes in the river inputs of silica and changes in denitrification due to climate change will impact the amount of silicon exported, with impacts on Atlantic algal productivity and ecology.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Zuozhu Wen, Thomas J. Browning, Rongbo Dai, Wenwei Wu, Weiying Li, Xiaohua Hu, Wenfang Lin, Lifang Wang, Xin Liu, Zhimian Cao, Haizheng Hong, and Dalin Shi
Biogeosciences, 19, 5237–5250, https://doi.org/10.5194/bg-19-5237-2022, https://doi.org/10.5194/bg-19-5237-2022, 2022
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Fe and P are key factors controlling the biogeography and activity of marine N2-fixing microorganisms. We found lower abundance and activity of N2 fixers in the northern South China Sea than around the western boundary of the North Pacific, and N2 fixation rates switched from Fe–P co-limitation to P limitation. We hypothesize the Fe supply rates and Fe utilization strategies of each N2 fixer are important in regulating spatial variability in community structure across the study area.
Claudia Eisenring, Sophy E. Oliver, Samar Khatiwala, and Gregory F. de Souza
Biogeosciences, 19, 5079–5106, https://doi.org/10.5194/bg-19-5079-2022, https://doi.org/10.5194/bg-19-5079-2022, 2022
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Given the sparsity of observational constraints on micronutrients such as zinc (Zn), we assess the sensitivities of a framework for objective parameter optimisation in an oceanic Zn cycling model. Our ensemble of optimisations towards synthetic data with varying kinds of uncertainty shows that deficiencies related to model complexity and the choice of the misfit function generally have a greater impact on the retrieval of model Zn uptake behaviour than does the limitation of data coverage.
Yoshikazu Sasai, Sherwood Lan Smith, Eko Siswanto, Hideharu Sasaki, and Masami Nonaka
Biogeosciences, 19, 4865–4882, https://doi.org/10.5194/bg-19-4865-2022, https://doi.org/10.5194/bg-19-4865-2022, 2022
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We have investigated the adaptive response of phytoplankton growth to changing light, nutrients, and temperature over the North Pacific using two physical-biological models. We compare modeled chlorophyll and primary production from an inflexible control model (InFlexPFT), which assumes fixed carbon (C):nitrogen (N):chlorophyll (Chl) ratios, to a recently developed flexible phytoplankton functional type model (FlexPFT), which incorporates photoacclimation and variable C:N:Chl ratios.
Jens Terhaar, Thomas L. Frölicher, and Fortunat Joos
Biogeosciences, 19, 4431–4457, https://doi.org/10.5194/bg-19-4431-2022, https://doi.org/10.5194/bg-19-4431-2022, 2022
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Estimates of the ocean sink of anthropogenic carbon vary across various approaches. We show that the global ocean carbon sink can be estimated by three parameters, two of which approximate the ocean ventilation in the Southern Ocean and the North Atlantic, and one of which approximates the chemical capacity of the ocean to take up carbon. With observations of these parameters, we estimate that the global ocean carbon sink is 10 % larger than previously assumed, and we cut uncertainties in half.
Natasha René van Horsten, Hélène Planquette, Géraldine Sarthou, Thomas James Ryan-Keogh, Nolwenn Lemaitre, Thato Nicholas Mtshali, Alakendra Roychoudhury, and Eva Bucciarelli
Biogeosciences, 19, 3209–3224, https://doi.org/10.5194/bg-19-3209-2022, https://doi.org/10.5194/bg-19-3209-2022, 2022
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The remineralisation proxy, barite, was measured along 30°E in the southern Indian Ocean during early austral winter. To our knowledge this is the first reported Southern Ocean winter study. Concentrations throughout the water column were comparable to observations during spring to autumn. By linking satellite primary production to this proxy a possible annual timescale is proposed. These findings also suggest possible carbon remineralisation from satellite data on a basin scale.
Zhibo Shao and Ya-Wei Luo
Biogeosciences, 19, 2939–2952, https://doi.org/10.5194/bg-19-2939-2022, https://doi.org/10.5194/bg-19-2939-2022, 2022
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Non-cyanobacterial diazotrophs (NCDs) may be an important player in fixing N2 in the ocean. By conducting meta-analyses, we found that a representative marine NCD phylotype, Gamma A, tends to inhabit ocean environments with high productivity, low iron concentration and high light intensity. It also appears to be more abundant inside cyclonic eddies. Our study suggests a niche differentiation of NCDs from cyanobacterial diazotrophs as the latter prefers low-productivity and high-iron oceans.
Coraline Leseurre, Claire Lo Monaco, Gilles Reverdin, Nicolas Metzl, Jonathan Fin, Claude Mignon, and Léa Benito
Biogeosciences, 19, 2599–2625, https://doi.org/10.5194/bg-19-2599-2022, https://doi.org/10.5194/bg-19-2599-2022, 2022
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Decadal trends of fugacity of CO2 (fCO2), total alkalinity (AT), total carbon (CT) and pH in surface waters are investigated in different domains of the southern Indian Ocean (45°S–57°S) from ongoing and station observations regularly conducted in summer over the period 1998–2019. The fCO2 increase and pH decrease are mainly driven by anthropogenic CO2 estimated just below the summer mixed layer, as well as by a warming south of the polar front or in the fertilized waters near Kerguelen Island.
Priscilla Le Mézo, Jérôme Guiet, Kim Scherrer, Daniele Bianchi, and Eric Galbraith
Biogeosciences, 19, 2537–2555, https://doi.org/10.5194/bg-19-2537-2022, https://doi.org/10.5194/bg-19-2537-2022, 2022
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This study quantifies the role of commercially targeted fish biomass in the cycling of three important nutrients (N, P, and Fe), relative to nutrients otherwise available in water and to nutrients required by primary producers, and the impact of fishing. We use a model of commercially targeted fish biomass constrained by fish catch and stock assessment data to assess the contributions of fish at the global scale, at the time of the global peak catch and prior to industrial fishing.
Rebecca Chmiel, Nathan Lanning, Allison Laubach, Jong-Mi Lee, Jessica Fitzsimmons, Mariko Hatta, William Jenkins, Phoebe Lam, Matthew McIlvin, Alessandro Tagliabue, and Mak Saito
Biogeosciences, 19, 2365–2395, https://doi.org/10.5194/bg-19-2365-2022, https://doi.org/10.5194/bg-19-2365-2022, 2022
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Dissolved cobalt is present in trace amounts in seawater and is a necessary nutrient for marine microbes. On a transect from the Alaskan coast to Tahiti, we measured seawater concentrations of dissolved cobalt. Here, we describe several interesting features of the Pacific cobalt cycle including cobalt sources along the Alaskan coast and Hawaiian vents, deep-ocean particle formation, cobalt activity in low-oxygen regions, and how our samples compare to a global biogeochemical model’s predictions.
Nicolas Metzl, Claire Lo Monaco, Coraline Leseurre, Céline Ridame, Jonathan Fin, Claude Mignon, Marion Gehlen, and Thi Tuyet Trang Chau
Biogeosciences, 19, 1451–1468, https://doi.org/10.5194/bg-19-1451-2022, https://doi.org/10.5194/bg-19-1451-2022, 2022
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During an oceanographic cruise conducted in January 2020 in the south-western Indian Ocean, we observed very low CO2 concentrations associated with a strong phytoplankton bloom that occurred south-east of Madagascar. This biological event led to a strong regional CO2 ocean sink not previously observed.
Darren R. Clark, Andrew P. Rees, Charissa M. Ferrera, Lisa Al-Moosawi, Paul J. Somerfield, Carolyn Harris, Graham D. Quartly, Stephen Goult, Glen Tarran, and Gennadi Lessin
Biogeosciences, 19, 1355–1376, https://doi.org/10.5194/bg-19-1355-2022, https://doi.org/10.5194/bg-19-1355-2022, 2022
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Measurements of microbial processes were made in the sunlit open ocean during a research cruise (AMT19) between the UK and Chile. These help us to understand how microbial communities maintain the function of remote ecosystems. We find that the nitrogen cycling microbes which produce nitrite respond to changes in the environment. Our insights will aid the development of models that aim to replicate and ultimately project how marine environments may respond to ongoing climate change.
Martí Galí, Marcus Falls, Hervé Claustre, Olivier Aumont, and Raffaele Bernardello
Biogeosciences, 19, 1245–1275, https://doi.org/10.5194/bg-19-1245-2022, https://doi.org/10.5194/bg-19-1245-2022, 2022
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Part of the organic matter produced by plankton in the upper ocean is exported to the deep ocean. This process, known as the biological carbon pump, is key for the regulation of atmospheric carbon dioxide and global climate. However, the dynamics of organic particles below the upper ocean layer are not well understood. Here we compared the measurements acquired by autonomous robots in the top 1000 m of the ocean to a numerical model, which can help improve future climate projections.
Marie Barbieux, Julia Uitz, Alexandre Mignot, Collin Roesler, Hervé Claustre, Bernard Gentili, Vincent Taillandier, Fabrizio D'Ortenzio, Hubert Loisel, Antoine Poteau, Edouard Leymarie, Christophe Penkerc'h, Catherine Schmechtig, and Annick Bricaud
Biogeosciences, 19, 1165–1194, https://doi.org/10.5194/bg-19-1165-2022, https://doi.org/10.5194/bg-19-1165-2022, 2022
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This study assesses marine biological production in two Mediterranean systems representative of vast desert-like (oligotrophic) areas encountered in the global ocean. We use a novel approach based on non-intrusive high-frequency in situ measurements by two profiling robots, the BioGeoChemical-Argo (BGC-Argo) floats. Our results indicate substantial yet variable production rates and contribution to the whole water column of the subsurface layer, typically considered steady and non-productive.
Filippa Fransner, Friederike Fröb, Jerry Tjiputra, Nadine Goris, Siv K. Lauvset, Ingunn Skjelvan, Emil Jeansson, Abdirahman Omar, Melissa Chierici, Elizabeth Jones, Agneta Fransson, Sólveig R. Ólafsdóttir, Truls Johannessen, and Are Olsen
Biogeosciences, 19, 979–1012, https://doi.org/10.5194/bg-19-979-2022, https://doi.org/10.5194/bg-19-979-2022, 2022
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Ocean acidification, a direct consequence of the CO2 release by human activities, is a serious threat to marine ecosystems. In this study, we conduct a detailed investigation of the acidification of the Nordic Seas, from 1850 to 2100, by using a large set of samples taken during research cruises together with numerical model simulations. We estimate the effects of changes in different environmental factors on the rate of acidification and its potential effects on cold-water corals.
Guorong Zhong, Xuegang Li, Jinming Song, Baoxiao Qu, Fan Wang, Yanjun Wang, Bin Zhang, Xiaoxia Sun, Wuchang Zhang, Zhenyan Wang, Jun Ma, Huamao Yuan, and Liqin Duan
Biogeosciences, 19, 845–859, https://doi.org/10.5194/bg-19-845-2022, https://doi.org/10.5194/bg-19-845-2022, 2022
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A predictor selection algorithm was constructed to decrease the predicting error in the surface ocean partial pressure of CO2 (pCO2) mapping by finding better combinations of pCO2 predictors in different regions. Compared with previous research using the same combination of predictors in all regions, using different predictors selected by the algorithm in different regions can effectively decrease pCO2 predicting errors.
Shantelle Smith, Katye E. Altieri, Mhlangabezi Mdutyana, David R. Walker, Ruan G. Parrott, Sedick Gallie, Kurt A. M. Spence, Jessica M. Burger, and Sarah E. Fawcett
Biogeosciences, 19, 715–741, https://doi.org/10.5194/bg-19-715-2022, https://doi.org/10.5194/bg-19-715-2022, 2022
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Ammonium is a crucial yet poorly understood component of the Southern Ocean nitrogen cycle. We attribute our finding of consistently high ammonium concentrations in the winter mixed layer to limited ammonium consumption and sustained ammonium production, conditions under which the Southern Ocean becomes a source of carbon dioxide to the atmosphere. From similar data collected over an annual cycle, we propose a seasonal cycle for ammonium in shallow polar waters – a first for the Southern Ocean.
Jannes Koelling, Dariia Atamanchuk, Johannes Karstensen, Patricia Handmann, and Douglas W. R. Wallace
Biogeosciences, 19, 437–454, https://doi.org/10.5194/bg-19-437-2022, https://doi.org/10.5194/bg-19-437-2022, 2022
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In this study, we investigate oxygen variability in the deep western boundary current in the Labrador Sea from multiyear moored records. We estimate that about half of the oxygen taken up in the interior Labrador Sea by air–sea gas exchange during deep water formation is exported southward the same year. Our results underline the complexity of the oxygen uptake and export in the Labrador Sea and highlight the important role this region plays in supplying oxygen to the deep ocean.
Céline Ridame, Julie Dinasquet, Søren Hallstrøm, Estelle Bigeard, Lasse Riemann, France Van Wambeke, Matthieu Bressac, Elvira Pulido-Villena, Vincent Taillandier, Fréderic Gazeau, Antonio Tovar-Sanchez, Anne-Claire Baudoux, and Cécile Guieu
Biogeosciences, 19, 415–435, https://doi.org/10.5194/bg-19-415-2022, https://doi.org/10.5194/bg-19-415-2022, 2022
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We show that in the Mediterranean Sea spatial variability in N2 fixation is related to the diazotrophic community composition reflecting different nutrient requirements among species. Nutrient supply by Saharan dust is of great importance to diazotrophs, as shown by the strong stimulation of N2 fixation after a simulated dust event under present and future climate conditions; the magnitude of stimulation depends on the degree of limitation related to the diazotrophic community composition.
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We describe a method for correcting errors in oxygen optode measurements on autonomous platforms in the ocean. The errors result from the relatively slow response time of the sensor. The correction method includes an in situ determination of the effective response time and requires the time stamps of the individual measurements. It is highly relevant for the BGC-Argo program and also applicable to gliders. We also explore if diurnal changes in oxygen can be obtained from profiling floats.
We describe a method for correcting errors in oxygen optode measurements on autonomous...
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