Articles | Volume 17, issue 18
https://doi.org/10.5194/bg-17-4523-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-4523-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
15 Sep 2020
Research article |
| 15 Sep 2020
| 15 Sep 2020
Decomposing reflectance spectra to track gross primary production in a subalpine evergreen forest
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA
Troy S. Magney
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA
Department of Plant Sciences, University of California, Davis, CA, USA
Debsunder Dutta
NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
Department of Civil Engineering, Indian Institute of Science, Bengaluru, India
David R. Bowling
School of Biological Sciences, University of Utah, Salt Lake City, UT, USA
Barry A. Logan
Department of Biology, Bowdoin College, Brunswick, ME, USA
Sean P. Burns
Department of Geography, University of Colorado, Boulder, CO, USA
National Center for Atmospheric Research, Boulder, CO, USA
Peter D. Blanken
Department of Geography, University of Colorado, Boulder, CO, USA
Katja Grossmann
Institute of Environmental Physics, University of Heidelberg, Heidelberg, Germany
Joint Institute for Regional Earth System Science and Engineering, University of California Los Angeles, Los Angeles, CA, USA
Sophia Lopez
Department of Biology, Bowdoin College, Brunswick, ME, USA
Andrew D. Richardson
Center for Ecosystem Science and Society, and School of Informatics, Computing, and Cyber Systems, Northern Arizona University, Flagstaff, AZ, USA
Jochen Stutz
Joint Institute for Regional Earth System Science and Engineering, University of California Los Angeles, Los Angeles, CA, USA
Department of Atmospheric and Oceanic Sciences, University of California Los Angeles, Los Angeles, CA, USA
Christian Frankenberg
CORRESPONDING AUTHOR
Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, CA, USA
NASA Jet Propulsion Laboratory, California Institute of Technology, Pasadena, CA, USA
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Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
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Jakob Borchardt, Konstantin Gerilowski, Sven Krautwurst, Heinrich Bovensmann, Andrew K. Thorpe, David R. Thompson, Christian Frankenberg, Charles E. Miller, Riley M. Duren, and John Philip Burrows
Atmos. Meas. Tech., 14, 1267–1291, https://doi.org/10.5194/amt-14-1267-2021, https://doi.org/10.5194/amt-14-1267-2021, 2021
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The AVIRIS-NG hyperspectral imager has been used successfully to identify and quantify anthropogenic methane sources utilizing different retrieval and inversion methods. Here, we examine the adaption and application of the WFM-DOAS algorithm to AVIRIS-NG measurements to retrieve local methane column enhancements, compare the results with other retrievals, and quantify the uncertainties resulting from the retrieval method. Additionally, we estimate emissions from five detected methane plumes.
Nicholas C. Parazoo, Troy Magney, Alex Norton, Brett Raczka, Cédric Bacour, Fabienne Maignan, Ian Baker, Yongguang Zhang, Bo Qiu, Mingjie Shi, Natasha MacBean, Dave R. Bowling, Sean P. Burns, Peter D. Blanken, Jochen Stutz, Katja Grossmann, and Christian Frankenberg
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Satellite measurements of solar-induced chlorophyll fluorescence (SIF) provide a global measure of photosynthetic change. This enables scientists to better track carbon cycle responses to environmental change and tune biochemical processes in vegetation models for an improved simulation of future change. We use tower-instrumented SIF measurements and controlled model experiments to assess the state of the art in terrestrial biosphere SIF modeling and find a wide range of sensitivities to light.
Marielle Saunois, Ann R. Stavert, Ben Poulter, Philippe Bousquet, Josep G. Canadell, Robert B. Jackson, Peter A. Raymond, Edward J. Dlugokencky, Sander Houweling, Prabir K. Patra, Philippe Ciais, Vivek K. Arora, David Bastviken, Peter Bergamaschi, Donald R. Blake, Gordon Brailsford, Lori Bruhwiler, Kimberly M. Carlson, Mark Carrol, Simona Castaldi, Naveen Chandra, Cyril Crevoisier, Patrick M. Crill, Kristofer Covey, Charles L. Curry, Giuseppe Etiope, Christian Frankenberg, Nicola Gedney, Michaela I. Hegglin, Lena Höglund-Isaksson, Gustaf Hugelius, Misa Ishizawa, Akihiko Ito, Greet Janssens-Maenhout, Katherine M. Jensen, Fortunat Joos, Thomas Kleinen, Paul B. Krummel, Ray L. Langenfelds, Goulven G. Laruelle, Licheng Liu, Toshinobu Machida, Shamil Maksyutov, Kyle C. McDonald, Joe McNorton, Paul A. Miller, Joe R. Melton, Isamu Morino, Jurek Müller, Fabiola Murguia-Flores, Vaishali Naik, Yosuke Niwa, Sergio Noce, Simon O'Doherty, Robert J. Parker, Changhui Peng, Shushi Peng, Glen P. Peters, Catherine Prigent, Ronald Prinn, Michel Ramonet, Pierre Regnier, William J. Riley, Judith A. Rosentreter, Arjo Segers, Isobel J. Simpson, Hao Shi, Steven J. Smith, L. Paul Steele, Brett F. Thornton, Hanqin Tian, Yasunori Tohjima, Francesco N. Tubiello, Aki Tsuruta, Nicolas Viovy, Apostolos Voulgarakis, Thomas S. Weber, Michiel van Weele, Guido R. van der Werf, Ray F. Weiss, Doug Worthy, Debra Wunch, Yi Yin, Yukio Yoshida, Wenxin Zhang, Zhen Zhang, Yuanhong Zhao, Bo Zheng, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
Earth Syst. Sci. Data, 12, 1561–1623, https://doi.org/10.5194/essd-12-1561-2020, https://doi.org/10.5194/essd-12-1561-2020, 2020
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Understanding and quantifying the global methane (CH4) budget is important for assessing realistic pathways to mitigate climate change. We have established a consortium of multidisciplinary scientists under the umbrella of the Global Carbon Project to synthesize and stimulate new research aimed at improving and regularly updating the global methane budget. This is the second version of the review dedicated to the decadal methane budget, integrating results of top-down and bottom-up estimates.
Gregory Duveiller, Federico Filipponi, Sophia Walther, Philipp Köhler, Christian Frankenberg, Luis Guanter, and Alessandro Cescatti
Earth Syst. Sci. Data, 12, 1101–1116, https://doi.org/10.5194/essd-12-1101-2020, https://doi.org/10.5194/essd-12-1101-2020, 2020
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Sun-induced chlorophyll fluorescence is a valuable indicator of vegetation productivity, but our capacity to measure it from space using satellite remote techniques has been hampered by a lack of spatial detail. Based on prior knowledge of how ecosystems should respond to growing conditions in some modelling along with ancillary satellite observations, we provide here a new enhanced dataset with higher spatial resolution that better represents the spatial patterns of vegetation growth over land.
Alexander J. Turner, Philipp Köhler, Troy S. Magney, Christian Frankenberg, Inez Fung, and Ronald C. Cohen
Biogeosciences, 17, 405–422, https://doi.org/10.5194/bg-17-405-2020, https://doi.org/10.5194/bg-17-405-2020, 2020
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We present the highest resolution solar-induced chlorophyll fluorescence (SIF) dataset from satellite measurements, providing previously unobservable phenomena related to plant photosynthesis. We find a strong correspondence between TROPOMI SIF and AmeriFlux GPP. We then observe a double peak in the seasonality of California's photosynthesis, not seen by traditional vegetation indices (e.g., MODIS). This is further corroborated by EOF/PC analysis.
Siraput Jongaramrungruang, Christian Frankenberg, Georgios Matheou, Andrew K. Thorpe, David R. Thompson, Le Kuai, and Riley M. Duren
Atmos. Meas. Tech., 12, 6667–6681, https://doi.org/10.5194/amt-12-6667-2019, https://doi.org/10.5194/amt-12-6667-2019, 2019
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This paper demonstrates the use of high-resolution 2-D plume imagery from airborne remote sensing retrievals to quantify methane point-source emissions. It shows significant improvements on the flux estimates without the need for direct wind speed measurements. This paves the way for enhanced flux estimates in future field campaign and space-based observations to better understand the magnitude and distribution of various point sources of methane.
Daniel H. Cusworth, Daniel J. Jacob, Daniel J. Varon, Christopher Chan Miller, Xiong Liu, Kelly Chance, Andrew K. Thorpe, Riley M. Duren, Charles E. Miller, David R. Thompson, Christian Frankenberg, Luis Guanter, and Cynthia A. Randles
Atmos. Meas. Tech., 12, 5655–5668, https://doi.org/10.5194/amt-12-5655-2019, https://doi.org/10.5194/amt-12-5655-2019, 2019
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We examine the potential for global detection of methane plumes from individual point sources with the new generation of spaceborne imaging spectrometers scheduled for launch in 2019–2025. We perform methane retrievals on simulated scenes with varying surfaces and atmospheric methane concentrations. Our results suggest that imaging spectrometers in space could play a transformative role in the future for quantifying methane emissions from point sources on a global scale.
Jocelyn E. Egan, David R. Bowling, and David A. Risk
Biogeosciences, 16, 3197–3205, https://doi.org/10.5194/bg-16-3197-2019, https://doi.org/10.5194/bg-16-3197-2019, 2019
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Traditionally a mass-dependent correction is made when measuring the radiocarbon composition in organic samples. This correction has not been evaluated for the soil gas environment where gas transport processes are important. Here, we show using theory that this traditional correction is not appropriate for estimating the radiocarbon composition of soil biological production. We also propose a new solution that accounts for soil gas transport processes.
Ryan Bares, Logan Mitchell, Ben Fasoli, David R. Bowling, Douglas Catharine, Maria Garcia, Byron Eng, Jim Ehleringer, and John C. Lin
Earth Syst. Sci. Data, 11, 1291–1308, https://doi.org/10.5194/essd-11-1291-2019, https://doi.org/10.5194/essd-11-1291-2019, 2019
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We overview two near-surface trace gas measurement networks with the aim of describing procedures, locations, and data structure with sufficient detail to serve as an in-depth method reference. Additionally, we developed a novel method for quantifying measurement uncertainty produced by these networks providing insight into appropriate applications of the data and differences in data collection methods. This uncertainty metric is broadly applicable to many trace gas and air quality datasets.
Debsunder Dutta, David S. Schimel, Ying Sun, Christiaan van der Tol, and Christian Frankenberg
Biogeosciences, 16, 77–103, https://doi.org/10.5194/bg-16-77-2019, https://doi.org/10.5194/bg-16-77-2019, 2019
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Canopy structural and leaf photosynthesis parameterizations are often fixed over time in Earth system models and represent large sources of uncertainty in predictions of carbon and water fluxes. We develop a moving window nonlinear optimal parameter inversion framework using constraining flux and satellite reflectance observations. The results demonstrate the applicability of the approach for error reduction and capturing the seasonal variability of key ecosystem parameters.
Christopher W. O'Dell, Annmarie Eldering, Paul O. Wennberg, David Crisp, Michael R. Gunson, Brendan Fisher, Christian Frankenberg, Matthäus Kiel, Hannakaisa Lindqvist, Lukas Mandrake, Aronne Merrelli, Vijay Natraj, Robert R. Nelson, Gregory B. Osterman, Vivienne H. Payne, Thomas E. Taylor, Debra Wunch, Brian J. Drouin, Fabiano Oyafuso, Albert Chang, James McDuffie, Michael Smyth, David F. Baker, Sourish Basu, Frédéric Chevallier, Sean M. R. Crowell, Liang Feng, Paul I. Palmer, Mavendra Dubey, Omaira E. García, David W. T. Griffith, Frank Hase, Laura T. Iraci, Rigel Kivi, Isamu Morino, Justus Notholt, Hirofumi Ohyama, Christof Petri, Coleen M. Roehl, Mahesh K. Sha, Kimberly Strong, Ralf Sussmann, Yao Te, Osamu Uchino, and Voltaire A. Velazco
Atmos. Meas. Tech., 11, 6539–6576, https://doi.org/10.5194/amt-11-6539-2018, https://doi.org/10.5194/amt-11-6539-2018, 2018
Umarporn Charusombat, Ayumi Fujisaki-Manome, Andrew D. Gronewold, Brent M. Lofgren, Eric J. Anderson, Peter D. Blanken, Christopher Spence, John D. Lenters, Chuliang Xiao, Lindsay E. Fitzpatrick, and Gregory Cutrell
Hydrol. Earth Syst. Sci., 22, 5559–5578, https://doi.org/10.5194/hess-22-5559-2018, https://doi.org/10.5194/hess-22-5559-2018, 2018
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The authors evaluated several algorithms of heat loss and evaporation simulation by comparing with direct measurements at four offshore flux towers in the North American Great Lakes. The algorithms reproduced the seasonal cycle of heat loss and evaporation reasonably, but some algorithms significantly overestimated them during fall to early winter. This was due to false assumption of roughness length scales for temperature and humidity and was improved by employing a correct parameterization.
Istem Fer, Ryan Kelly, Paul R. Moorcroft, Andrew D. Richardson, Elizabeth M. Cowdery, and Michael C. Dietze
Biogeosciences, 15, 5801–5830, https://doi.org/10.5194/bg-15-5801-2018, https://doi.org/10.5194/bg-15-5801-2018, 2018
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The computer models we use to understand and forecast the ecosystem changes have multiple components that determine their outcomes. Due to our limited observation capacities, these components bear uncertainties that in return affect our predictions. While there are techniques for reducing these uncertainties, they are not applicable to every model due to computational and statistical barriers. This research presents a method that lowers those barriers and allows us to improve model predictions.
Benjamin Fasoli, John C. Lin, David R. Bowling, Logan Mitchell, and Daniel Mendoza
Geosci. Model Dev., 11, 2813–2824, https://doi.org/10.5194/gmd-11-2813-2018, https://doi.org/10.5194/gmd-11-2813-2018, 2018
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The Stochastic Time-Inverted Lagrangian Transport (STILT) model is used to determine the area upstream that influences the air arriving at a given location. We introduce a new framework that makes the STILT model faster and easier to deploy and improves results. We also show how the model can be applied to spatially complex measurement strategies using trace gas observations collected onboard a Salt Lake City, Utah, USA, light-rail train.
Chunxiang Ye, Xianliang Zhou, Dennis Pu, Jochen Stutz, James Festa, Max Spolaor, Catalina Tsai, Christopher Cantrell, Roy L. Mauldin III, Andrew Weinheimer, Rebecca S. Hornbrook, Eric C. Apel, Alex Guenther, Lisa Kaser, Bin Yuan, Thomas Karl, Julie Haggerty, Samuel Hall, Kirk Ullmann, James Smith, and John Ortega
Atmos. Chem. Phys., 18, 9107–9120, https://doi.org/10.5194/acp-18-9107-2018, https://doi.org/10.5194/acp-18-9107-2018, 2018
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Substantial levels of HONO existed during the day throughout the troposphere over the southeastern US during NOMADSS 2013. Particulate nitrate photolysis appeared to be the major volume HONO source, while NOx was an important HONO precursor only in industrial and urban plumes. HONO was not a significant OH radical precursor in the rural troposphere away from the ground surface; however, its production from particulate nitrate photolysis was an important renoxification pathway.
Si-Wan Kim, Vijay Natraj, Seoyoung Lee, Hyeong-Ahn Kwon, Rokjin Park, Joost de Gouw, Gregory Frost, Jhoon Kim, Jochen Stutz, Michael Trainer, Catalina Tsai, and Carsten Warneke
Atmos. Chem. Phys., 18, 7639–7655, https://doi.org/10.5194/acp-18-7639-2018, https://doi.org/10.5194/acp-18-7639-2018, 2018
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Formaldehyde (HCHO) is a hazardous air pollutant and is associated with tropospheric ozone production. HCHO has been monitored from space. In this study, to acquire high-quality satellite-based HCHO observations, we utilize fine-resolution atmospheric chemistry model results as an input to the computer code for satellite retrievals over the Los Angeles Basin. Our study indicates that the use of fine-resolution profile shapes helps to identify HCHO plumes from space.
Verónika Ceballos-Núñez, Andrew D. Richardson, and Carlos A. Sierra
Biogeosciences, 15, 1607–1625, https://doi.org/10.5194/bg-15-1607-2018, https://doi.org/10.5194/bg-15-1607-2018, 2018
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Will the terrestrial biosphere be a carbon source or sink in the future? Different model simulations cannot reach a consensus, so we need to diagnose the performance of these models. We implemented three models differing in their carbon allocation strategies and assessed their performance using three metrics. The most sensible metric was the distribution of carbon age and transit times. Thus, empirical measurements of these distributions could be key to reduce the model uncertainty.
Catalina Tsai, Max Spolaor, Santo Fedele Colosimo, Olga Pikelnaya, Ross Cheung, Eric Williams, Jessica B. Gilman, Brian M. Lerner, Robert J. Zamora, Carsten Warneke, James M. Roberts, Ravan Ahmadov, Joost de Gouw, Timothy Bates, Patricia K. Quinn, and Jochen Stutz
Atmos. Chem. Phys., 18, 1977–1996, https://doi.org/10.5194/acp-18-1977-2018, https://doi.org/10.5194/acp-18-1977-2018, 2018
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Nitrous acid (HONO) photolysis is an important source of hydroxyl radicals (OH). Vertical HONO fluxes, observed in the snow-free, wintertime Uintah Basin, Utah, USA, show that chemical formation of HONO on the ground closes the HONO budget. Under high NOx conditions, HONO formation is most likely due to photo-enhanced conversion of NO2 on the ground. Under moderate to low NO2 conditions, photolysis of HNO3 on the ground seems to be the most likely source of HONO.
Tilman Hüneke, Oliver-Alex Aderhold, Jannik Bounin, Marcel Dorf, Eric Gentry, Katja Grossmann, Jens-Uwe Grooß, Peter Hoor, Patrick Jöckel, Mareike Kenntner, Marvin Knapp, Matthias Knecht, Dominique Lörks, Sabrina Ludmann, Sigrun Matthes, Rasmus Raecke, Marcel Reichert, Jannis Weimar, Bodo Werner, Andreas Zahn, Helmut Ziereis, and Klaus Pfeilsticker
Atmos. Meas. Tech., 10, 4209–4234, https://doi.org/10.5194/amt-10-4209-2017, https://doi.org/10.5194/amt-10-4209-2017, 2017
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This paper describes a novel instrument for the aircraft-borne remote sensing of trace gases and liquid and solid water. Until recently, such measurements could only be evaluated under clear-sky conditions. We present a characterization and error assessment of the novel "scaling method", which allows for the retrieval of absolute trace gas concentrations under all sky conditions, significantly expanding the applicability of such measurements to study atmospheric photochemistry.
Andrew K. Thorpe, Christian Frankenberg, David R. Thompson, Riley M. Duren, Andrew D. Aubrey, Brian D. Bue, Robert O. Green, Konstantin Gerilowski, Thomas Krings, Jakob Borchardt, Eric A. Kort, Colm Sweeney, Stephen Conley, Dar A. Roberts, and Philip E. Dennison
Atmos. Meas. Tech., 10, 3833–3850, https://doi.org/10.5194/amt-10-3833-2017, https://doi.org/10.5194/amt-10-3833-2017, 2017
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At local scales emissions of methane (CH4) and carbon dioxide (CO2) are highly uncertain. The AVIRIS-NG imaging spectrometer maps large regions and generates high-spatial-resolution CH4 and CO2 concentration maps from anthropogenic and natural sources. Examples include CH4 from a processing plant, tank, pipeline leak, seep, mine vent shafts, and CO2 from power plants. This demonstrates a greenhouse gas monitoring capability that targets the two dominant anthropogenic climate-forcing agents.
Henrique F. Duarte, Brett M. Raczka, Daniel M. Ricciuto, John C. Lin, Charles D. Koven, Peter E. Thornton, David R. Bowling, Chun-Ta Lai, Kenneth J. Bible, and James R. Ehleringer
Biogeosciences, 14, 4315–4340, https://doi.org/10.5194/bg-14-4315-2017, https://doi.org/10.5194/bg-14-4315-2017, 2017
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We evaluate the Community Land Model (CLM4.5) against observations at an old-growth coniferous forest site that is subjected to water stress each summer. We found that, after calibration, CLM was able to reasonably simulate the observed fluxes of energy and carbon, carbon stocks, carbon isotope ratios, and ecosystem response to water stress. This study demonstrates that carbon isotopes can expose structural weaknesses in CLM and provide a key constraint that may guide future model development.
Francesc Montané, Andrew M. Fox, Avelino F. Arellano, Natasha MacBean, M. Ross Alexander, Alex Dye, Daniel A. Bishop, Valerie Trouet, Flurin Babst, Amy E. Hessl, Neil Pederson, Peter D. Blanken, Gil Bohrer, Christopher M. Gough, Marcy E. Litvak, Kimberly A. Novick, Richard P. Phillips, Jeffrey D. Wood, and David J. P. Moore
Geosci. Model Dev., 10, 3499–3517, https://doi.org/10.5194/gmd-10-3499-2017, https://doi.org/10.5194/gmd-10-3499-2017, 2017
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How carbon is allocated to different plant tissues (leaves, stem, and roots) determines carbon residence time and thus remains a central challenge for understanding the global carbon cycle. In this paper, we compared standard and novel carbon allocation schemes in CLM4.5 and evaluated them using eddy covariance wood and leaf biomass. The dynamic scheme based on work by Litton improved model performance, but this was dependent on model assumptions about woody turnover.
Marielle Saunois, Philippe Bousquet, Ben Poulter, Anna Peregon, Philippe Ciais, Josep G. Canadell, Edward J. Dlugokencky, Giuseppe Etiope, David Bastviken, Sander Houweling, Greet Janssens-Maenhout, Francesco N. Tubiello, Simona Castaldi, Robert B. Jackson, Mihai Alexe, Vivek K. Arora, David J. Beerling, Peter Bergamaschi, Donald R. Blake, Gordon Brailsford, Lori Bruhwiler, Cyril Crevoisier, Patrick Crill, Kristofer Covey, Christian Frankenberg, Nicola Gedney, Lena Höglund-Isaksson, Misa Ishizawa, Akihiko Ito, Fortunat Joos, Heon-Sook Kim, Thomas Kleinen, Paul Krummel, Jean-François Lamarque, Ray Langenfelds, Robin Locatelli, Toshinobu Machida, Shamil Maksyutov, Joe R. Melton, Isamu Morino, Vaishali Naik, Simon O'Doherty, Frans-Jan W. Parmentier, Prabir K. Patra, Changhui Peng, Shushi Peng, Glen P. Peters, Isabelle Pison, Ronald Prinn, Michel Ramonet, William J. Riley, Makoto Saito, Monia Santini, Ronny Schroeder, Isobel J. Simpson, Renato Spahni, Atsushi Takizawa, Brett F. Thornton, Hanqin Tian, Yasunori Tohjima, Nicolas Viovy, Apostolos Voulgarakis, Ray Weiss, David J. Wilton, Andy Wiltshire, Doug Worthy, Debra Wunch, Xiyan Xu, Yukio Yoshida, Bowen Zhang, Zhen Zhang, and Qiuan Zhu
Atmos. Chem. Phys., 17, 11135–11161, https://doi.org/10.5194/acp-17-11135-2017, https://doi.org/10.5194/acp-17-11135-2017, 2017
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Following the Global Methane Budget 2000–2012 published in Saunois et al. (2016), we use the same dataset of bottom-up and top-down approaches to discuss the variations in methane emissions over the period 2000–2012. The changes in emissions are discussed both in terms of trends and quasi-decadal changes. The ensemble gathered here allows us to synthesise the robust changes in terms of regional and sectorial contributions to the increasing methane emissions.
John R. Worden, Gary Doran, Susan Kulawik, Annmarie Eldering, David Crisp, Christian Frankenberg, Chris O'Dell, and Kevin Bowman
Atmos. Meas. Tech., 10, 2759–2771, https://doi.org/10.5194/amt-10-2759-2017, https://doi.org/10.5194/amt-10-2759-2017, 2017
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This paper evaluates the uncertainties of the total column carbon dioxide (XCO2) measurements from the NASA OCO-2 instrument by comparing observed variations in small geographical regions to the calculated uncertainties of the data within this region. In general we find that the reported XCO2 precision is related to that expected from the XCO2 radiance noise. However, the reported accuracy is at least smaller than the actual accuracy by a factor of 2–4.
Michael Buchwitz, Oliver Schneising, Maximilian Reuter, Jens Heymann, Sven Krautwurst, Heinrich Bovensmann, John P. Burrows, Hartmut Boesch, Robert J. Parker, Peter Somkuti, Rob G. Detmers, Otto P. Hasekamp, Ilse Aben, André Butz, Christian Frankenberg, and Alexander J. Turner
Atmos. Chem. Phys., 17, 5751–5774, https://doi.org/10.5194/acp-17-5751-2017, https://doi.org/10.5194/acp-17-5751-2017, 2017
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Methane is an important greenhouse gas and increasing atmospheric concentrations result in global warming. We present a simple method to derive annual methane emission estimates of methane hotspot areas from satellite data. We present results for four source areas. We found that our estimates are in good agreement with other studies/data sets for the Four Corners region in the USA and for Azerbaijan but we also found higher emissions for parts of California and Turkmenistan.
Jochen Stutz, Bodo Werner, Max Spolaor, Lisa Scalone, James Festa, Catalina Tsai, Ross Cheung, Santo F. Colosimo, Ugo Tricoli, Rasmus Raecke, Ryan Hossaini, Martyn P. Chipperfield, Wuhu Feng, Ru-Shan Gao, Eric J. Hintsa, James W. Elkins, Fred L. Moore, Bruce Daube, Jasna Pittman, Steven Wofsy, and Klaus Pfeilsticker
Atmos. Meas. Tech., 10, 1017–1042, https://doi.org/10.5194/amt-10-1017-2017, https://doi.org/10.5194/amt-10-1017-2017, 2017
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A new limb-scanning Differential Optical Absorption Spectroscopy (DOAS) instrument was developed for NASA’s Global Hawk unmanned aerial system during the Airborne Tropical TRopopause EXperiment to study trace gases in the tropical tropopause layer. A new technique that uses in situ and DOAS O3 observations together with radiative transfer calculations allows the retrieval of mixing ratios from the slant column densities of BrO and NO2 at high accuracies of 0.5 ppt and 15 ppt, respectively.
Kang Sun, Xiong Liu, Caroline R. Nowlan, Zhaonan Cai, Kelly Chance, Christian Frankenberg, Richard A. M. Lee, Randy Pollock, Robert Rosenberg, and David Crisp
Atmos. Meas. Tech., 10, 939–953, https://doi.org/10.5194/amt-10-939-2017, https://doi.org/10.5194/amt-10-939-2017, 2017
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Accurately characterizing the instrument line shape (ILS) of the Orbiting Carbon Observatory-2 (OCO-2) is challenging and highly important due to its high spectral resolution and requirement for retrieval accuracy. Measured ILS during preflight experiments has been used in the OCO-2 CO2 retrieval. This study derives the on-orbit ILS of OCO-2 using its solar measurements and answers the questions whether on-orbit ILS has changed compared to preflight and whether it varies during the mission.
Paul J. Hanson, Jeffery S. Riggs, W. Robert Nettles, Jana R. Phillips, Misha B. Krassovski, Leslie A. Hook, Lianhong Gu, Andrew D. Richardson, Donald M. Aubrecht, Daniel M. Ricciuto, Jeffrey M. Warren, and Charlotte Barbier
Biogeosciences, 14, 861–883, https://doi.org/10.5194/bg-14-861-2017, https://doi.org/10.5194/bg-14-861-2017, 2017
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This paper describes operational methods to achieve whole-ecosystem warming (WEW) for tall-stature, high-carbon, boreal forest peatlands. The methods enable scientists to study immediate and longer-term (1 decade) responses of organisms (microbes to trees) and ecosystem functions (carbon, water and nutrient cycles). The WEW technology allows researchers to have a plausible glimpse of future environmental conditions for study that are not available in the current observational record.
Annmarie Eldering, Chris W. O'Dell, Paul O. Wennberg, David Crisp, Michael R. Gunson, Camille Viatte, Charles Avis, Amy Braverman, Rebecca Castano, Albert Chang, Lars Chapsky, Cecilia Cheng, Brian Connor, Lan Dang, Gary Doran, Brendan Fisher, Christian Frankenberg, Dejian Fu, Robert Granat, Jonathan Hobbs, Richard A. M. Lee, Lukas Mandrake, James McDuffie, Charles E. Miller, Vicky Myers, Vijay Natraj, Denis O'Brien, Gregory B. Osterman, Fabiano Oyafuso, Vivienne H. Payne, Harold R. Pollock, Igor Polonsky, Coleen M. Roehl, Robert Rosenberg, Florian Schwandner, Mike Smyth, Vivian Tang, Thomas E. Taylor, Cathy To, Debra Wunch, and Jan Yoshimizu
Atmos. Meas. Tech., 10, 549–563, https://doi.org/10.5194/amt-10-549-2017, https://doi.org/10.5194/amt-10-549-2017, 2017
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This paper describes the measurements of atmospheric carbon dioxide collected in the first 18 months of the satellite mission known as the Orbiting Carbon Observatory-2 (OCO-2). The paper shows maps of the carbon dioxide data, data density, and other data fields that illustrate the data quality. This mission has collected a more precise, more dense dataset of carbon dioxide then we have ever had previously.
Nga Lee Ng, Steven S. Brown, Alexander T. Archibald, Elliot Atlas, Ronald C. Cohen, John N. Crowley, Douglas A. Day, Neil M. Donahue, Juliane L. Fry, Hendrik Fuchs, Robert J. Griffin, Marcelo I. Guzman, Hartmut Herrmann, Alma Hodzic, Yoshiteru Iinuma, José L. Jimenez, Astrid Kiendler-Scharr, Ben H. Lee, Deborah J. Luecken, Jingqiu Mao, Robert McLaren, Anke Mutzel, Hans D. Osthoff, Bin Ouyang, Benedicte Picquet-Varrault, Ulrich Platt, Havala O. T. Pye, Yinon Rudich, Rebecca H. Schwantes, Manabu Shiraiwa, Jochen Stutz, Joel A. Thornton, Andreas Tilgner, Brent J. Williams, and Rahul A. Zaveri
Atmos. Chem. Phys., 17, 2103–2162, https://doi.org/10.5194/acp-17-2103-2017, https://doi.org/10.5194/acp-17-2103-2017, 2017
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Oxidation of biogenic volatile organic compounds by NO3 is an important interaction between anthropogenic
and natural emissions. This review results from a June 2015 workshop and includes the recent literature
on kinetics, mechanisms, organic aerosol yields, and heterogeneous chemistry; advances in analytical
instrumentation; the current state NO3-BVOC chemistry in atmospheric models; and critical needs for
future research in modeling, field observations, and laboratory studies.
Bodo Werner, Jochen Stutz, Max Spolaor, Lisa Scalone, Rasmus Raecke, James Festa, Santo Fedele Colosimo, Ross Cheung, Catalina Tsai, Ryan Hossaini, Martyn P. Chipperfield, Giorgio S. Taverna, Wuhu Feng, James W. Elkins, David W. Fahey, Ru-Shan Gao, Erik J. Hintsa, Troy D. Thornberry, Free Lee Moore, Maria A. Navarro, Elliot Atlas, Bruce C. Daube, Jasna Pittman, Steve Wofsy, and Klaus Pfeilsticker
Atmos. Chem. Phys., 17, 1161–1186, https://doi.org/10.5194/acp-17-1161-2017, https://doi.org/10.5194/acp-17-1161-2017, 2017
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The paper reports on inorganic and organic bromine measured in the tropical tropopause layer (TTL) over the eastern Pacific in early 2013. Bryinorg is found to increase from a mean of 2.63 ± 1.04 ppt for θ in the range of 350–360 K to 5.11 ± 1.57 ppt for θ=390 ± 400 K, whereas in the subtropical lower stratosphere, it reaches 7.66 ± 2.95 ppt for θ in the range of 390–400 K. Within the TTL, total bromine is found to range from 20.3 ppt to 22.3 ppt.
David Crisp, Harold R. Pollock, Robert Rosenberg, Lars Chapsky, Richard A. M. Lee, Fabiano A. Oyafuso, Christian Frankenberg, Christopher W. O'Dell, Carol J. Bruegge, Gary B. Doran, Annmarie Eldering, Brendan M. Fisher, Dejian Fu, Michael R. Gunson, Lukas Mandrake, Gregory B. Osterman, Florian M. Schwandner, Kang Sun, Tommy E. Taylor, Paul O. Wennberg, and Debra Wunch
Atmos. Meas. Tech., 10, 59–81, https://doi.org/10.5194/amt-10-59-2017, https://doi.org/10.5194/amt-10-59-2017, 2017
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The Orbiting Carbon Observatory-2 carries and points a three-channel imaging grating spectrometer designed to collect high-resolution spectra of reflected sunlight within the molecular oxygen A-band at 0.765 microns and the carbon dioxide bands at 1.61 and 2.06 microns. Here, we describe the OCO-2 instrument, its data products, and its performance during its first 18 months in orbit.
Marielle Saunois, Philippe Bousquet, Ben Poulter, Anna Peregon, Philippe Ciais, Josep G. Canadell, Edward J. Dlugokencky, Giuseppe Etiope, David Bastviken, Sander Houweling, Greet Janssens-Maenhout, Francesco N. Tubiello, Simona Castaldi, Robert B. Jackson, Mihai Alexe, Vivek K. Arora, David J. Beerling, Peter Bergamaschi, Donald R. Blake, Gordon Brailsford, Victor Brovkin, Lori Bruhwiler, Cyril Crevoisier, Patrick Crill, Kristofer Covey, Charles Curry, Christian Frankenberg, Nicola Gedney, Lena Höglund-Isaksson, Misa Ishizawa, Akihiko Ito, Fortunat Joos, Heon-Sook Kim, Thomas Kleinen, Paul Krummel, Jean-François Lamarque, Ray Langenfelds, Robin Locatelli, Toshinobu Machida, Shamil Maksyutov, Kyle C. McDonald, Julia Marshall, Joe R. Melton, Isamu Morino, Vaishali Naik, Simon O'Doherty, Frans-Jan W. Parmentier, Prabir K. Patra, Changhui Peng, Shushi Peng, Glen P. Peters, Isabelle Pison, Catherine Prigent, Ronald Prinn, Michel Ramonet, William J. Riley, Makoto Saito, Monia Santini, Ronny Schroeder, Isobel J. Simpson, Renato Spahni, Paul Steele, Atsushi Takizawa, Brett F. Thornton, Hanqin Tian, Yasunori Tohjima, Nicolas Viovy, Apostolos Voulgarakis, Michiel van Weele, Guido R. van der Werf, Ray Weiss, Christine Wiedinmyer, David J. Wilton, Andy Wiltshire, Doug Worthy, Debra Wunch, Xiyan Xu, Yukio Yoshida, Bowen Zhang, Zhen Zhang, and Qiuan Zhu
Earth Syst. Sci. Data, 8, 697–751, https://doi.org/10.5194/essd-8-697-2016, https://doi.org/10.5194/essd-8-697-2016, 2016
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An accurate assessment of the methane budget is important to understand the atmospheric methane concentrations and trends and to provide realistic pathways for climate change mitigation. The various and diffuse sources of methane as well and its oxidation by a very short lifetime radical challenge this assessment. We quantify the methane sources and sinks as well as their uncertainties based on both bottom-up and top-down approaches provided by a broad international scientific community.
Daniel J. Jacob, Alexander J. Turner, Joannes D. Maasakkers, Jianxiong Sheng, Kang Sun, Xiong Liu, Kelly Chance, Ilse Aben, Jason McKeever, and Christian Frankenberg
Atmos. Chem. Phys., 16, 14371–14396, https://doi.org/10.5194/acp-16-14371-2016, https://doi.org/10.5194/acp-16-14371-2016, 2016
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Methane is a greenhouse gas emitted by a range of natural and anthropogenic sources. Atmospheric methane has been measured continuously from space since 2003, and new instruments are planned to launch in the near future that will greatly expand the capabilities of space-based observations. We review the value of current, future, and proposed satellite observations to better quantify methane emissions from the global scale down to the scale of point sources.
Brian Connor, Hartmut Bösch, James McDuffie, Tommy Taylor, Dejian Fu, Christian Frankenberg, Chris O'Dell, Vivienne H. Payne, Michael Gunson, Randy Pollock, Jonathan Hobbs, Fabiano Oyafuso, and Yibo Jiang
Atmos. Meas. Tech., 9, 5227–5238, https://doi.org/10.5194/amt-9-5227-2016, https://doi.org/10.5194/amt-9-5227-2016, 2016
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We present an analysis of uncertainties in global measurements of the column-averaged dry-air mole fraction of CO2 (XCO2) by the satellite OCO-2. The analysis is based on our best estimates for uncertainties in the OCO-2 operational algorithm and its inputs. From these results we estimate the "variable error", which differs between soundings, to infer the error in the difference of XCO2 between any two soundings. Variable errors are usually < 1 ppm over ocean and ~ 0.5–2 ppm over land.
Zeli Tan, Qianlai Zhuang, Daven K. Henze, Christian Frankenberg, Ed Dlugokencky, Colm Sweeney, Alexander J. Turner, Motoki Sasakawa, and Toshinobu Machida
Atmos. Chem. Phys., 16, 12649–12666, https://doi.org/10.5194/acp-16-12649-2016, https://doi.org/10.5194/acp-16-12649-2016, 2016
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Methane emissions from the pan-Arctic could be important in understanding the global carbon cycle but are still poorly constrained to date. This study demonstrated that satellite retrievals can be used to reduce the uncertainty of the estimates of these emissions. We also provided additional evidence for the existence of large methane emissions from pan-Arctic lakes in the Siberian yedoma permafrost region. We found that biogeochemical models should be improved for better estimates.
Sean P. Burns, Gordon D. Maclean, Peter D. Blanken, Steven P. Oncley, Steven R. Semmer, and Russell K. Monson
Geosci. Instrum. Method. Data Syst., 5, 451–471, https://doi.org/10.5194/gi-5-451-2016, https://doi.org/10.5194/gi-5-451-2016, 2016
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The hardware and software used to collect eddy-covariance ecosystem
fluxes of carbon dioxide, heat, and water vapor at a high-elevation
subalpine forest site over 17 years are described. Over time,
software/hardware improvements have increased the system robustness,
leading to a successful 10 Hz data-collection rate of better than 99.98 %. We also provide philosophical concepts that shaped our data system design and are applicable to many different types of environmental data collection.
Tomás Sherwen, Johan A. Schmidt, Mat J. Evans, Lucy J. Carpenter, Katja Großmann, Sebastian D. Eastham, Daniel J. Jacob, Barbara Dix, Theodore K. Koenig, Roman Sinreich, Ivan Ortega, Rainer Volkamer, Alfonso Saiz-Lopez, Cristina Prados-Roman, Anoop S. Mahajan, and Carlos Ordóñez
Atmos. Chem. Phys., 16, 12239–12271, https://doi.org/10.5194/acp-16-12239-2016, https://doi.org/10.5194/acp-16-12239-2016, 2016
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We present a simulation of tropospheric Cl, Br, I chemistry within the GEOS-Chem CTM. We find a decrease in tropospheric ozone burden of 18.6 % and a 8.2 % decrease in global mean OH concentrations. Cl oxidation of some VOCs range from 15 to 27 % of the total loss. Bromine plays a small role in oxidising oVOCs. Surface ozone, ozone sondes, and methane lifetime are in general improved by the inclusion of halogens. We argue that simulated bromine and chlorine represent a lower limit.
Brett Raczka, Henrique F. Duarte, Charles D. Koven, Daniel Ricciuto, Peter E. Thornton, John C. Lin, and David R. Bowling
Biogeosciences, 13, 5183–5204, https://doi.org/10.5194/bg-13-5183-2016, https://doi.org/10.5194/bg-13-5183-2016, 2016
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We use carbon isotopes of CO2 to improve the performance of a land surface model, a component with earth system climate models. We found that isotope observations can provide important information related to the exchange of carbon and water from vegetation driven by environmental stress from low atmospheric moisture and nitrogen limitation. It follows that isotopes have a unique potential to improve model performance and provide insight into land surface model development.
Remco A. Scheepmaker, Joost aan de Brugh, Haili Hu, Tobias Borsdorff, Christian Frankenberg, Camille Risi, Otto Hasekamp, Ilse Aben, and Jochen Landgraf
Atmos. Meas. Tech., 9, 3921–3937, https://doi.org/10.5194/amt-9-3921-2016, https://doi.org/10.5194/amt-9-3921-2016, 2016
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We have developed an algorithm to measure HDO (heavy water) in the atmosphere using the TROPOMI satellite instrument, scheduled for launch in 2016. Giving an insight in the history of water vapour, these measurements will help to better understand the water cycle and its role in climate change. We use realistic measurement simulations to describe the performance of the algorithm, and show that TROPOMI will greatly improve and extend the HDO datasets from the previous SCIAMACHY and GOSAT missions.
Christian Frankenberg, Susan S. Kulawik, Steven C. Wofsy, Frédéric Chevallier, Bruce Daube, Eric A. Kort, Christopher O'Dell, Edward T. Olsen, and Gregory Osterman
Atmos. Chem. Phys., 16, 7867–7878, https://doi.org/10.5194/acp-16-7867-2016, https://doi.org/10.5194/acp-16-7867-2016, 2016
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We use observations from the HIAPER Pole-to-Pole Observations (HIPPO) flights from January 2009 through September 2011 to validate CO2 measurements from satellites (GOSAT, TES, AIRS) and atmospheric inversion models (CarbonTracker CT2013B, MACC v13r1).
Glynn C. Hulley, Riley M. Duren, Francesca M. Hopkins, Simon J. Hook, Nick Vance, Pierre Guillevic, William R. Johnson, Bjorn T. Eng, Jonathan M. Mihaly, Veljko M. Jovanovic, Seth L. Chazanoff, Zak K. Staniszewski, Le Kuai, John Worden, Christian Frankenberg, Gerardo Rivera, Andrew D. Aubrey, Charles E. Miller, Nabin K. Malakar, Juan M. Sánchez Tomás, and Kendall T. Holmes
Atmos. Meas. Tech., 9, 2393–2408, https://doi.org/10.5194/amt-9-2393-2016, https://doi.org/10.5194/amt-9-2393-2016, 2016
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Using data from a new airborne Hyperspectral Thermal Emission Spectrometer (HyTES) instrument, we present a technique for the detection and wide-area mapping of emission plumes of methane and other atmospheric trace gas species over challenging and diverse environmental conditions with high spatial resolution, that permits direct attribution to sources in complex environments.
Santo Fedele Colosimo, Vijay Natraj, Stanley P. Sander, and Jochen Stutz
Atmos. Meas. Tech., 9, 1889–1905, https://doi.org/10.5194/amt-9-1889-2016, https://doi.org/10.5194/amt-9-1889-2016, 2016
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Vertical aerosol extinction profile retrievals based on space-borne oxygen A-band observations benefit from high spectral resolution measurements. Radiative transfer calculations show that under most atmospheric conditions the information content of the retrievals increases with spectral resolution, despite a decreasing signal-to-noise ratio. The retrieval of lower tropospheric aerosol extinction over high albedo surfaces and of lofted biomass burning plumes becomes thus possible.
Stefan Metzger, George Burba, Sean P. Burns, Peter D. Blanken, Jiahong Li, Hongyan Luo, and Rommel C. Zulueta
Atmos. Meas. Tech., 9, 1341–1359, https://doi.org/10.5194/amt-9-1341-2016, https://doi.org/10.5194/amt-9-1341-2016, 2016
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Enclosed infrared gas analyzers utilize a gas sampling system, which can substantially increase spectral corrections for eddy covariance applications. Here, we show that a requirements-based design can reduce high-frequency attenuation for H2O by ≈ 3/4, with the remaining flux correction not exceeding 3 %. The resulting gas sampling system can be used across a wide range of ecoclimates and site layouts, and enables more automated and comparable eddy covariance data processing across sites.
Thomas E. Taylor, Christopher W. O'Dell, Christian Frankenberg, Philip T. Partain, Heather Q. Cronk, Andrey Savtchenko, Robert R. Nelson, Emily J. Rosenthal, Albert Y. Chang, Brenden Fisher, Gregory B. Osterman, Randy H. Pollock, David Crisp, Annmarie Eldering, and Michael R. Gunson
Atmos. Meas. Tech., 9, 973–989, https://doi.org/10.5194/amt-9-973-2016, https://doi.org/10.5194/amt-9-973-2016, 2016
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NASA's Orbiting Carbon Observatory-2 (OCO-2) is providing approximately 1 million soundings per day of the total column of carbon dioxide (XCO2). The retrieval of XCO2 can only be performed for soundings sufficiently free of cloud and aerosol. This work highlights comparisons of OCO-2 cloud screening algorithms to the MODIS cloud mask product. We find agreement approximately 85 % of the time with some significant spatial and small seasonal dependencies.
Susan Kulawik, Debra Wunch, Christopher O'Dell, Christian Frankenberg, Maximilian Reuter, Tomohiro Oda, Frederic Chevallier, Vanessa Sherlock, Michael Buchwitz, Greg Osterman, Charles E. Miller, Paul O. Wennberg, David Griffith, Isamu Morino, Manvendra K. Dubey, Nicholas M. Deutscher, Justus Notholt, Frank Hase, Thorsten Warneke, Ralf Sussmann, John Robinson, Kimberly Strong, Matthias Schneider, Martine De Mazière, Kei Shiomi, Dietrich G. Feist, Laura T. Iraci, and Joyce Wolf
Atmos. Meas. Tech., 9, 683–709, https://doi.org/10.5194/amt-9-683-2016, https://doi.org/10.5194/amt-9-683-2016, 2016
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To accurately estimate source and sink locations of carbon dioxide, systematic errors in satellite measurements and models must be characterized. This paper examines two satellite data sets (GOSAT, launched 2009, and SCIAMACHY, launched 2002), and two models (CarbonTracker and MACC) vs. the TCCON CO2 validation data set. We assess biases and errors by season and latitude, satellite performance under averaging, and diurnal variability. Our findings are useful for assimilation of satellite data.
K.-E. Min, R. A. Washenfelder, W. P. Dubé, A. O. Langford, P. M. Edwards, K. J. Zarzana, J. Stutz, K. Lu, F. Rohrer, Y. Zhang, and S. S. Brown
Atmos. Meas. Tech., 9, 423–440, https://doi.org/10.5194/amt-9-423-2016, https://doi.org/10.5194/amt-9-423-2016, 2016
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We have developed a two-channel broadband cavity enhanced absorption spectrometer for field measurements of glyoxal, methylglyoxal, nitrous acid, nitrogen dioxide, and water. We have successfully deployed this instrument during two aircraft and two ground-based field campaigns. The demonstrated precision (2σ) for retrievals of CHOCHO, HONO, and NO2 are 34, 350, and 80 parts per trillion (pptv) in 5 s, with accuracy of 5.8, 9.0 and 5.0 %.
V. Shah, L. Jaeglé, L. E. Gratz, J. L. Ambrose, D. A. Jaffe, N. E. Selin, S. Song, T. L. Campos, F. M. Flocke, M. Reeves, D. Stechman, M. Stell, J. Festa, J. Stutz, A. J. Weinheimer, D. J. Knapp, D. D. Montzka, G. S. Tyndall, E. C. Apel, R. S. Hornbrook, A. J. Hills, D. D. Riemer, N. J. Blake, C. A. Cantrell, and R. L. Mauldin III
Atmos. Chem. Phys., 16, 1511–1530, https://doi.org/10.5194/acp-16-1511-2016, https://doi.org/10.5194/acp-16-1511-2016, 2016
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We present airborne observations of mercury over the southeastern USA during summer. Higher concentrations of oxidized mercury were observed in clean, dry air masses descending in the subtropical anti-cyclones. We used an atmospheric model to simulate the chemistry and transport of mercury. We found reasonable agreement with the observations when the modeled oxidation of elemental mercury was increased, suggesting fast cycling between elemental and oxidized mercury.
R. J. Wild, P. M. Edwards, T. S. Bates, R. C. Cohen, J. A. de Gouw, W. P. Dubé, J. B. Gilman, J. Holloway, J. Kercher, A. R. Koss, L. Lee, B. M. Lerner, R. McLaren, P. K. Quinn, J. M. Roberts, J. Stutz, J. A. Thornton, P. R. Veres, C. Warneke, E. Williams, C. J. Young, B. Yuan, K. J. Zarzana, and S. S. Brown
Atmos. Chem. Phys., 16, 573–583, https://doi.org/10.5194/acp-16-573-2016, https://doi.org/10.5194/acp-16-573-2016, 2016
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High wintertime ozone levels have been observed in the Uintah Basin, Utah, a sparsely populated rural region with intensive oil and gas operations. The reactive nitrogen budget plays an important role in tropospheric ozone formation, and we find that nighttime chemistry has a large effect on its partitioning. Much of the oxidation of reactive nitrogen during a high-ozone year occurred via heterogeneous uptake onto aerosol at night, keeping NOx at concentrations comparable to a low-ozone year.
S. P. Burns, P. D. Blanken, A. A. Turnipseed, J. Hu, and R. K. Monson
Biogeosciences, 12, 7349–7377, https://doi.org/10.5194/bg-12-7349-2015, https://doi.org/10.5194/bg-12-7349-2015, 2015
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The effect of warm-season precipitation on
environmental conditions and ecosystem-scale fluxes at a
high-elevation subalpine forest site was investigated. As would be
expected (based on the surface energy balance), precipitation caused
an increase in latent heat flux (evapotranspiration) and a decrease in
sensible heat flux. The evaporative component of evapotranspiration
was, on average, estimated to be around 6% in dry conditions and
between 15-25% in partially wet conditions.
D. R. Thompson, I. Leifer, H. Bovensmann, M. Eastwood, M. Fladeland, C. Frankenberg, K. Gerilowski, R. O. Green, S. Kratwurst, T. Krings, B. Luna, and A. K. Thorpe
Atmos. Meas. Tech., 8, 4383–4397, https://doi.org/10.5194/amt-8-4383-2015, https://doi.org/10.5194/amt-8-4383-2015, 2015
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We discuss principles for real-time infrared spectral signature detection and measurement, and report performance onboard the NASA Airborne Visible Infrared Spectrometer - Next Generation (AVIRIS-NG). We describe a case study of the NASA/ESA CO2 and MEthane eXperiment (COMEX), a multi-platform campaign to measure CH4 plumes released from anthropogenic sources including oil and gas infrastructure. AVIRIS-NG successfully detected CH4 plumes in concert with other in situ and remote instruments.
D. R. Bowling, J. E. Egan, S. J. Hall, and D. A. Risk
Biogeosciences, 12, 5143–5160, https://doi.org/10.5194/bg-12-5143-2015, https://doi.org/10.5194/bg-12-5143-2015, 2015
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Soil respiration and its stable isotopes were studied in a subalpine forest. There was strong diel variability in soil efflux but not in the isotope content of soil efflux or CO2 from biological activity in the soil. Following rain, soil efflux increased, but the isotope content of these fluxes did not change. Temporal variation in the isotope content of soil efflux was unrelated to environmental variables. Results confirmed established theory regarding diffusive soil gas transport.
J. R. Worden, A. J. Turner, A. Bloom, S. S. Kulawik, J. Liu, M. Lee, R. Weidner, K. Bowman, C. Frankenberg, R. Parker, and V. H. Payne
Atmos. Meas. Tech., 8, 3433–3445, https://doi.org/10.5194/amt-8-3433-2015, https://doi.org/10.5194/amt-8-3433-2015, 2015
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Here we demonstrate the potential for estimating lower tropospheric CH4 concentrations through the combination of free-tropospheric methane measurements from the Aura Tropospheric Emission Spectrometer (TES) and XCH4 (dry-mole air fraction of methane) from the Greenhouse Gases Observing Satellite - Thermal And Near-infrared for carbon Observation (GOSAT TANSO).
E. N. Koffi, P. J. Rayner, A. J. Norton, C. Frankenberg, and M. Scholze
Biogeosciences, 12, 4067–4084, https://doi.org/10.5194/bg-12-4067-2015, https://doi.org/10.5194/bg-12-4067-2015, 2015
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We investigate the utility of satellite measurements of solar-induced chlorophyll fluorescence (SIF) in constraining gross primary productivity (GPP). We simulate SIF with the biosphere model BETHY coupled with the fluorescence model SCOPE. The model simulates well the patterns of SIF. SIF is sensitive to leaf chlorophyll and incoming radiation but not to the key physiological parameter Vcmax controlling GPP. Thus, further model development is necessary before SIF can be used to constrain GPP.
R. A. Scheepmaker, C. Frankenberg, N. M. Deutscher, M. Schneider, S. Barthlott, T. Blumenstock, O. E. Garcia, F. Hase, N. Jones, E. Mahieu, J. Notholt, V. Velazco, J. Landgraf, and I. Aben
Atmos. Meas. Tech., 8, 1799–1818, https://doi.org/10.5194/amt-8-1799-2015, https://doi.org/10.5194/amt-8-1799-2015, 2015
L. Guanter, I. Aben, P. Tol, J. M. Krijger, A. Hollstein, P. Köhler, A. Damm, J. Joiner, C. Frankenberg, and J. Landgraf
Atmos. Meas. Tech., 8, 1337–1352, https://doi.org/10.5194/amt-8-1337-2015, https://doi.org/10.5194/amt-8-1337-2015, 2015
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This paper investigates the potential of the upcoming TROPOspheric Monitoring Instrument (TROPOMI) instrument for the retrieval of the chlorophyll fluorescence signal emitted in the 650–850nm spectral range by the photosynthetic machinery of green plants. We find that TROPOMI will allow substantial improvements in the space monitoring of fluorescence with respect to current spaceborne instruments such as GOME-2 and SCIAMACHY.
C. Prados-Roman, C. A. Cuevas, T. Hay, R. P. Fernandez, A. S. Mahajan, S.-J. Royer, M. Galí, R. Simó, J. Dachs, K. Großmann, D. E. Kinnison, J.-F. Lamarque, and A. Saiz-Lopez
Atmos. Chem. Phys., 15, 583–593, https://doi.org/10.5194/acp-15-583-2015, https://doi.org/10.5194/acp-15-583-2015, 2015
C. Frankenberg, R. Pollock, R. A. M. Lee, R. Rosenberg, J.-F. Blavier, D. Crisp, C. W. O'Dell, G. B. Osterman, C. Roehl, P. O. Wennberg, and D. Wunch
Atmos. Meas. Tech., 8, 301–313, https://doi.org/10.5194/amt-8-301-2015, https://doi.org/10.5194/amt-8-301-2015, 2015
M. Alexe, P. Bergamaschi, A. Segers, R. Detmers, A. Butz, O. Hasekamp, S. Guerlet, R. Parker, H. Boesch, C. Frankenberg, R. A. Scheepmaker, E. Dlugokencky, C. Sweeney, S. C. Wofsy, and E. A. Kort
Atmos. Chem. Phys., 15, 113–133, https://doi.org/10.5194/acp-15-113-2015, https://doi.org/10.5194/acp-15-113-2015, 2015
V. Gryazin, C. Risi, J. Jouzel, N. Kurita, J. Worden, C. Frankenberg, V. Bastrikov, K. Gribanov, and O. Stukova
Atmos. Chem. Phys., 14, 9807–9830, https://doi.org/10.5194/acp-14-9807-2014, https://doi.org/10.5194/acp-14-9807-2014, 2014
S. T. Klosterman, K. Hufkens, J. M. Gray, E. Melaas, O. Sonnentag, I. Lavine, L. Mitchell, R. Norman, M. A. Friedl, and A. D. Richardson
Biogeosciences, 11, 4305–4320, https://doi.org/10.5194/bg-11-4305-2014, https://doi.org/10.5194/bg-11-4305-2014, 2014
S. Massart, A. Agusti-Panareda, I. Aben, A. Butz, F. Chevallier, C. Crevoisier, R. Engelen, C. Frankenberg, and O. Hasekamp
Atmos. Chem. Phys., 14, 6139–6158, https://doi.org/10.5194/acp-14-6139-2014, https://doi.org/10.5194/acp-14-6139-2014, 2014
B. Dils, M. Buchwitz, M. Reuter, O. Schneising, H. Boesch, R. Parker, S. Guerlet, I. Aben, T. Blumenstock, J. P. Burrows, A. Butz, N. M. Deutscher, C. Frankenberg, F. Hase, O. P. Hasekamp, J. Heymann, M. De Mazière, J. Notholt, R. Sussmann, T. Warneke, D. Griffith, V. Sherlock, and D. Wunch
Atmos. Meas. Tech., 7, 1723–1744, https://doi.org/10.5194/amt-7-1723-2014, https://doi.org/10.5194/amt-7-1723-2014, 2014
S. Houweling, M. Krol, P. Bergamaschi, C. Frankenberg, E. J. Dlugokencky, I. Morino, J. Notholt, V. Sherlock, D. Wunch, V. Beck, C. Gerbig, H. Chen, E. A. Kort, T. Röckmann, and I. Aben
Atmos. Chem. Phys., 14, 3991–4012, https://doi.org/10.5194/acp-14-3991-2014, https://doi.org/10.5194/acp-14-3991-2014, 2014
M. Verma, M. A. Friedl, A. D. Richardson, G. Kiely, A. Cescatti, B. E. Law, G. Wohlfahrt, B. Gielen, O. Roupsard, E. J. Moors, P. Toscano, F. P. Vaccari, D. Gianelle, G. Bohrer, A. Varlagin, N. Buchmann, E. van Gorsel, L. Montagnani, and P. Propastin
Biogeosciences, 11, 2185–2200, https://doi.org/10.5194/bg-11-2185-2014, https://doi.org/10.5194/bg-11-2185-2014, 2014
C. J. Young, R. A. Washenfelder, P. M. Edwards, D. D. Parrish, J. B. Gilman, W. C. Kuster, L. H. Mielke, H. D. Osthoff, C. Tsai, O. Pikelnaya, J. Stutz, P. R. Veres, J. M. Roberts, S. Griffith, S. Dusanter, P. S. Stevens, J. Flynn, N. Grossberg, B. Lefer, J. S. Holloway, J. Peischl, T. B. Ryerson, E. L. Atlas, D. R. Blake, and S. S. Brown
Atmos. Chem. Phys., 14, 3427–3440, https://doi.org/10.5194/acp-14-3427-2014, https://doi.org/10.5194/acp-14-3427-2014, 2014
C. Liu, S. Beirle, T. Butler, P. Hoor, C. Frankenberg, P. Jöckel, M. Penning de Vries, U. Platt, A. Pozzer, M. G. Lawrence, J. Lelieveld, H. Tost, and T. Wagner
Atmos. Chem. Phys., 14, 1717–1732, https://doi.org/10.5194/acp-14-1717-2014, https://doi.org/10.5194/acp-14-1717-2014, 2014
S. J. Burns and S. P. Burns
Solid Earth Discuss., https://doi.org/10.5194/sed-6-487-2014, https://doi.org/10.5194/sed-6-487-2014, 2014
Revised manuscript not accepted
A. K. Thorpe, C. Frankenberg, and D. A. Roberts
Atmos. Meas. Tech., 7, 491–506, https://doi.org/10.5194/amt-7-491-2014, https://doi.org/10.5194/amt-7-491-2014, 2014
P. C. Stoy, M. C. Dietze, A. D. Richardson, R. Vargas, A. G. Barr, R. S. Anderson, M. A. Arain, I. T. Baker, T. A. Black, J. M. Chen, R. B. Cook, C. M. Gough, R. F. Grant, D. Y. Hollinger, R. C. Izaurralde, C. J. Kucharik, P. Lafleur, B. E. Law, S. Liu, E. Lokupitiya, Y. Luo, J. W. Munger, C. Peng, B. Poulter, D. T. Price, D. M. Ricciuto, W. J. Riley, A. K. Sahoo, K. Schaefer, C. R. Schwalm, H. Tian, H. Verbeeck, and E. Weng
Biogeosciences, 10, 6893–6909, https://doi.org/10.5194/bg-10-6893-2013, https://doi.org/10.5194/bg-10-6893-2013, 2013
J. Joiner, L. Guanter, R. Lindstrot, M. Voigt, A. P. Vasilkov, E. M. Middleton, K. F. Huemmrich, Y. Yoshida, and C. Frankenberg
Atmos. Meas. Tech., 6, 2803–2823, https://doi.org/10.5194/amt-6-2803-2013, https://doi.org/10.5194/amt-6-2803-2013, 2013
L. Mandrake, C. Frankenberg, C. W. O'Dell, G. Osterman, P. Wennberg, and D. Wunch
Atmos. Meas. Tech., 6, 2851–2864, https://doi.org/10.5194/amt-6-2851-2013, https://doi.org/10.5194/amt-6-2851-2013, 2013
R. A. Scheepmaker, C. Frankenberg, A. Galli, A. Butz, H. Schrijver, N. M. Deutscher, D. Wunch, T. Warneke, S. Fally, and I. Aben
Atmos. Meas. Tech., 6, 879–894, https://doi.org/10.5194/amt-6-879-2013, https://doi.org/10.5194/amt-6-879-2013, 2013
J. Worden, K. Wecht, C. Frankenberg, M. Alvarado, K. Bowman, E. Kort, S. Kulawik, M. Lee, V. Payne, and H. Worden
Atmos. Chem. Phys., 13, 3679–3692, https://doi.org/10.5194/acp-13-3679-2013, https://doi.org/10.5194/acp-13-3679-2013, 2013
K. W. Wong, C. Tsai, B. Lefer, N. Grossberg, and J. Stutz
Atmos. Chem. Phys., 13, 3587–3601, https://doi.org/10.5194/acp-13-3587-2013, https://doi.org/10.5194/acp-13-3587-2013, 2013
K. Großmann, U. Frieß, E. Peters, F. Wittrock, J. Lampel, S. Yilmaz, J. Tschritter, R. Sommariva, R. von Glasow, B. Quack, K. Krüger, K. Pfeilsticker, and U. Platt
Atmos. Chem. Phys., 13, 3363–3378, https://doi.org/10.5194/acp-13-3363-2013, https://doi.org/10.5194/acp-13-3363-2013, 2013
C. Frankenberg, D. Wunch, G. Toon, C. Risi, R. Scheepmaker, J.-E. Lee, P. Wennberg, and J. Worden
Atmos. Meas. Tech., 6, 263–274, https://doi.org/10.5194/amt-6-263-2013, https://doi.org/10.5194/amt-6-263-2013, 2013
H. M. Worden, M. N. Deeter, C. Frankenberg, M. George, F. Nichitiu, J. Worden, I. Aben, K. W. Bowman, C. Clerbaux, P. F. Coheur, A. T. J. de Laat, R. Detweiler, J. R. Drummond, D. P. Edwards, J. C. Gille, D. Hurtmans, M. Luo, S. Martínez-Alonso, S. Massie, G. Pfister, and J. X. Warner
Atmos. Chem. Phys., 13, 837–850, https://doi.org/10.5194/acp-13-837-2013, https://doi.org/10.5194/acp-13-837-2013, 2013
Related subject area
Biogeochemistry: Land
Precipitation–fire functional interactions control biomass stocks and carbon exchanges across the world's largest savanna
Nitrogen concentrations in boreal and temperate tree tissues vary with tree age/size, growth rate, and climate
Comparison of shortwave radiation dynamics between boreal forest and open peatland pairs in southern and northern Finland
Cropland expansion drives vegetation greenness decline in Southeast Asia
How to measure the efficiency of bioenergy crops compared to forestation
Implications of climate and litter quality for simulations of litterbag decomposition at high latitudes
Soil carbon-concentration and carbon-climate feedbacks in CMIP6 Earth system models
Monitoring the impact of forest changes on carbon uptake with solar-induced fluorescence measurements from GOME-2A and TROPOMI for an Australian and Chinese case study
Technical note: Flagging inconsistencies in flux tower data
Synchrony of African rainforest solar induced chlorophyll fluorescence and environmental factors
Relevance of near-surface soil moisture vs. terrestrial water storage for global vegetation functioning
High-resolution spatial patterns and drivers of terrestrial ecosystem carbon dioxide, methane, and nitrous oxide fluxes in the tundra
Long-term additions of ammonium nitrate to montane forest ecosystems may cause limited soil acidification, even in the presence of soil carbonate
Leaf carbon and nitrogen stoichiometric variation along environmental gradients
Gross primary productivity and the predictability of CO2: more uncertainty in what we predict than how well we predict it
Scale variance in the carbon dynamics of fragmented, mixed-use landscapes estimated using model–data fusion
Seasonal controls override forest harvesting effects on the composition of dissolved organic matter mobilized from boreal forest soil organic horizons
Carbon cycle extremes accelerate weakening of the land carbon sink in the late 21st century
Estimating oil-palm Si storage, Si return to soils, and Si losses through harvest in smallholder oil-palm plantations of Sumatra, Indonesia
Assessing the sensitivity of multi-frequency passive microwave vegetation optical depth to vegetation properties
Seasonal variation of mercury concentration of ancient olive groves of Lebanon
Soil organic matter diagenetic state informs boreal forest ecosystem feedbacks to climate change
Upscaling dryland carbon and water fluxes with artificial neural networks of optical, thermal, and microwave satellite remote sensing
Sun-induced fluorescence as a proxy for primary productivity across vegetation types and climates
Technical note: A view from space on global flux towers by MODIS and Landsat: the FluxnetEO data set
Changing sub-Arctic tundra vegetation upon permafrost degradation: impact on foliar mineral element cycling
Land Management Contributes significantly to observed Vegetation Browning in Syria during 2001–2018
MODIS Vegetation Continuous Fields tree cover needs calibrating in tropical savannas
Assessing the representation of the Australian carbon cycle in global vegetation models
Assessing the response of soil carbon in Australia to changing inputs and climate using a consistent modelling framework
Reviews and syntheses: Ongoing and emerging opportunities to improve environmental science using observations from the Advanced Baseline Imager on the Geostationary Operational Environmental Satellites
First pan-Arctic assessment of dissolved organic carbon in lakes of the permafrost region
The impact of wildfire on biogeochemical fluxes and water quality in boreal catchments
Examining the sensitivity of the terrestrial carbon cycle to the expression of El Niño
Subalpine grassland productivity increased with warmer and drier conditions, but not with higher N deposition, in an altitudinal transplantation experiment
Reviews and syntheses: Impacts of plant-silica–herbivore interactions on terrestrial biogeochemical cycling
Implementation of nitrogen cycle in the CLASSIC land model
Combined effects of ozone and drought stress on the emission of biogenic volatile organic compounds from Quercus robur L.
A bottom-up quantification of foliar mercury uptake fluxes across Europe
Lagged effects regulate the inter-annual variability of the tropical carbon balance
Spatial variations in terrestrial net ecosystem productivity and its local indicators
Nitrogen cycling in CMIP6 land surface models: progress and limitations
Sensitivity of 21st century simulated ecosystem indicators to model parameters, prescribed climate drivers, RCP scenarios and forest management actions for two Finnish boreal forest sites
Summarizing the state of the terrestrial biosphere in few dimensions
Patterns and trends of the dominant environmental controls of net biome productivity
Localized basal area affects soil respiration temperature sensitivity in a coastal deciduous forest
Dissolved organic carbon mobilized from organic horizons of mature and harvested black spruce plots in a mesic boreal region
Ideas and perspectives: Proposed best practices for collaboration at cross-disciplinary observatories
Effects of leaf length and development stage on the triple oxygen isotope signature of grass leaf water and phytoliths: insights for a proxy of continental atmospheric humidity
Response of simulated burned area to historical changes in environmental and anthropogenic factors: a comparison of seven fire models
Mathew Williams, David T. Milodowski, T. Luke Smallman, Kyle G. Dexter, Gabi C. Hegerl, Iain M. McNicol, Michael O'Sullivan, Carla M. Roesch, Casey M. Ryan, Stephen Sitch, and Aude Valade
Biogeosciences, 22, 1597–1614, https://doi.org/10.5194/bg-22-1597-2025, https://doi.org/10.5194/bg-22-1597-2025, 2025
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Southern African woodlands are important in both regional and global carbon cycles. A new carbon analysis created by combining satellite data with ecosystem modelling shows that the region has a neutral C balance overall but with important spatial variations. Patterns of biomass and C balance across the region are the outcome of climate controls on production and vegetation–fire interactions, which determine the mortality of vegetation and spatial variations in vegetation function.
Martin Thurner, Kailiang Yu, Stefano Manzoni, Anatoly Prokushkin, Melanie A. Thurner, Zhiqiang Wang, and Thomas Hickler
Biogeosciences, 22, 1475–1493, https://doi.org/10.5194/bg-22-1475-2025, https://doi.org/10.5194/bg-22-1475-2025, 2025
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Nitrogen concentrations in tree tissues (leaves, branches, stems, and roots) are related to photosynthesis, growth, and respiration and thus to vegetation carbon uptake. Our novel database allows us to identify the controls of tree tissue nitrogen concentrations in boreal and temperate forests, such as tree age/size, species, and climate. Changes therein will affect tissue nitrogen concentrations and thus also vegetation carbon uptake.
Otso Peräkylä, Erkka Rinne, Ekaterina Ezhova, Anna Lintunen, Annalea Lohila, Juho Aalto, Mika Aurela, Pasi Kolari, and Markku Kulmala
Biogeosciences, 22, 153–179, https://doi.org/10.5194/bg-22-153-2025, https://doi.org/10.5194/bg-22-153-2025, 2025
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Forests are seen as good for climate. Yet, in areas with snow, trees break up the white snow surface and absorb more sunlight than open areas. This has a warming effect, negating some of the climate benefit of trees. We studied two site pairs in Finland, both with an open peatland and a forest. We found that the later the snow melts, the more extra energy the forest absorbs as compared to the peatland. This has implications for the future, as snow cover duration is affected by global warming.
Ruiying Zhao, Xiangzhong Luo, Yuheng Yang, Luri Nurlaila Syahid, Chi Chen, and Janice Ser Huay Lee
Biogeosciences, 21, 5393–5406, https://doi.org/10.5194/bg-21-5393-2024, https://doi.org/10.5194/bg-21-5393-2024, 2024
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Southeast Asia has been a global hot spot of land-use change over the past 50 years. Meanwhile, it also hosts some of the most carbon-dense and diverse ecosystems in the world. Here, we explore the impact of land-use change, along with other environmental factors, on the ecosystem in Southeast Asia. We find that elevated CO2 imposed a positive impact on vegetation greenness, but the positive impact was largely offset by intensive land-use changes in the region, particularly cropland expansion.
Sabine Egerer, Stefanie Falk, Dorothea Mayer, Tobias Nützel, Wolfgang A. Obermeier, and Julia Pongratz
Biogeosciences, 21, 5005–5025, https://doi.org/10.5194/bg-21-5005-2024, https://doi.org/10.5194/bg-21-5005-2024, 2024
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Using a state-of-the-art land model, we find that bioenergy plants can store carbon more efficiently than forests over long periods in the soil, in geological reservoirs, or by substituting fossil-fuel-based energy. Planting forests is more suitable for reaching climate targets by 2050. The carbon removal potential depends also on local environmental conditions. These considerations have important implications for climate policy, spatial planning, nature conservation, and agriculture.
Elin Ristorp Aas, Inge Althuizen, Hui Tang, Sonya Geange, Eva Lieungh, Vigdis Vandvik, and Terje Koren Berntsen
Biogeosciences, 21, 3789–3817, https://doi.org/10.5194/bg-21-3789-2024, https://doi.org/10.5194/bg-21-3789-2024, 2024
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We used a soil model to replicate two litterbag decomposition experiments to examine the implications of climate, litter quality, and soil microclimate representation. We found that macroclimate was more important than litter quality for modeled mass loss. By comparing different representations of soil temperature and moisture we found that using observed data did not improve model results. We discuss causes for this and suggest possible improvements to both the model and experimental design.
Rebecca M. Varney, Pierre Friedlingstein, Sarah E. Chadburn, Eleanor J. Burke, and Peter M. Cox
Biogeosciences, 21, 2759–2776, https://doi.org/10.5194/bg-21-2759-2024, https://doi.org/10.5194/bg-21-2759-2024, 2024
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Soil carbon is the largest store of carbon on the land surface of Earth and is known to be particularly sensitive to climate change. Understanding this future response is vital to successfully meeting Paris Agreement targets, which rely heavily on carbon uptake by the land surface. In this study, the individual responses of soil carbon are quantified and compared amongst CMIP6 Earth system models used within the most recent IPCC report, and the role of soils in the land response is highlighted.
Juliëtte C. S. Anema, Klaas Folkert Boersma, Piet Stammes, Gerbrand Koren, William Woodgate, Philipp Köhler, Christian Frankenberg, and Jacqui Stol
Biogeosciences, 21, 2297–2311, https://doi.org/10.5194/bg-21-2297-2024, https://doi.org/10.5194/bg-21-2297-2024, 2024
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To keep the Paris agreement goals within reach, negative emissions are necessary. They can be achieved with mitigation techniques, such as reforestation, which remove CO2 from the atmosphere. While governments have pinned their hopes on them, there is not yet a good set of tools to objectively determine whether negative emissions do what they promise. Here we show how satellite measurements of plant fluorescence are useful in detecting carbon uptake due to reforestation and vegetation regrowth.
Martin Jung, Jacob Nelson, Mirco Migliavacca, Tarek El-Madany, Dario Papale, Markus Reichstein, Sophia Walther, and Thomas Wutzler
Biogeosciences, 21, 1827–1846, https://doi.org/10.5194/bg-21-1827-2024, https://doi.org/10.5194/bg-21-1827-2024, 2024
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We present a methodology to detect inconsistencies in perhaps the most important data source for measurements of ecosystem–atmosphere carbon, water, and energy fluxes. We expect that the derived consistency flags will be relevant for data users and will help in improving our understanding of and our ability to model ecosystem–climate interactions.
Russell Doughty, Michael C. Wimberly, Dan Wanyama, Helene Peiro, Nicholas Parazoo, Sean Crowell, and Moses Azong Cho
EGUsphere, https://doi.org/10.5194/egusphere-2023-3022, https://doi.org/10.5194/egusphere-2023-3022, 2024
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We find West African SIF to increase during the dry season and peak prior to precipitation, similar to the Amazon. In Central Africa, we find a continental-scale bimodal seasonality in SIF, the minimum of which is synchronous with precipitation, but its maximum is likely less related to environmental drivers. We also find important differences in the seasonality of SIF and VIs, which indicates that VI-based estimates of photosynthesis could be inaccurate as they have been shown to be the Amazon.
Prajwal Khanal, Anne J. Hoek Van Dijke, Timo Schaffhauser, Wantong Li, Sinikka J. Paulus, Chunhui Zhan, and René Orth
Biogeosciences, 21, 1533–1547, https://doi.org/10.5194/bg-21-1533-2024, https://doi.org/10.5194/bg-21-1533-2024, 2024
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Water availability is essential for vegetation functioning, but the depth of vegetation water uptake is largely unknown due to sparse ground measurements. This study correlates vegetation growth with soil moisture availability globally to infer vegetation water uptake depth using only satellite-based data. We find that the vegetation water uptake depth varies across climate regimes and vegetation types and also changes during dry months at a global scale.
Anna-Maria Virkkala, Pekka Niittynen, Julia Kemppinen, Maija E. Marushchak, Carolina Voigt, Geert Hensgens, Johanna Kerttula, Konsta Happonen, Vilna Tyystjärvi, Christina Biasi, Jenni Hultman, Janne Rinne, and Miska Luoto
Biogeosciences, 21, 335–355, https://doi.org/10.5194/bg-21-335-2024, https://doi.org/10.5194/bg-21-335-2024, 2024
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Arctic greenhouse gas (GHG) fluxes of CO2, CH4, and N2O are important for climate feedbacks. We combined extensive in situ measurements and remote sensing data to develop machine-learning models to predict GHG fluxes at a 2 m resolution across a tundra landscape. The analysis revealed that the system was a net GHG sink and showed widespread CH4 uptake in upland vegetation types, almost surpassing the high wetland CH4 emissions at the landscape scale.
Thomas Baer, Gerhard Furrer, Stephan Zimmermann, and Patrick Schleppi
Biogeosciences, 20, 4577–4589, https://doi.org/10.5194/bg-20-4577-2023, https://doi.org/10.5194/bg-20-4577-2023, 2023
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Nitrogen (N) deposition to forest ecosystems is a matter of concern because it affects their nutrient status and makes their soil acidic. We observed an ongoing acidification in a montane forest in central Switzerland even if the subsoil of this site contains carbonates and is thus well buffered. We experimentally added N to simulate a higher pollution, and this increased the acidification. After 25 years of study, however, we can see the first signs of recovery, also under higher N deposition.
Huiying Xu, Han Wang, Iain Colin Prentice, and Sandy P. Harrison
Biogeosciences, 20, 4511–4525, https://doi.org/10.5194/bg-20-4511-2023, https://doi.org/10.5194/bg-20-4511-2023, 2023
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Leaf carbon (C) and nitrogen (N) are crucial elements in leaf construction and physiological processes. This study reconciled the roles of phylogeny, species identity, and climate in stoichiometric traits at individual and community levels. The variations in community-level leaf N and C : N ratio were captured by optimality-based models using climate data. Our results provide an approach to improve the representation of leaf stoichiometry in vegetation models to better couple N with C cycling.
István Dunkl, Nicole Lovenduski, Alessio Collalti, Vivek K. Arora, Tatiana Ilyina, and Victor Brovkin
Biogeosciences, 20, 3523–3538, https://doi.org/10.5194/bg-20-3523-2023, https://doi.org/10.5194/bg-20-3523-2023, 2023
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Despite differences in the reproduction of gross primary productivity (GPP) by Earth system models (ESMs), ESMs have similar predictability of the global carbon cycle. We found that, although GPP variability originates from different regions and is driven by different climatic variables across the ESMs, the ESMs rely on the same mechanisms to predict their own GPP. This shows that the predictability of the carbon cycle is limited by our understanding of variability rather than predictability.
David T. Milodowski, T. Luke Smallman, and Mathew Williams
Biogeosciences, 20, 3301–3327, https://doi.org/10.5194/bg-20-3301-2023, https://doi.org/10.5194/bg-20-3301-2023, 2023
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Model–data fusion (MDF) allows us to combine ecosystem models with Earth observation data. Fragmented landscapes, with a mosaic of contrasting ecosystems, pose a challenge for MDF. We develop a novel MDF framework to estimate the carbon balance of fragmented landscapes and show the importance of accounting for ecosystem heterogeneity to prevent scale-dependent bias in estimated carbon fluxes, disturbance fluxes in particular, and to improve ecological fidelity of the calibrated models.
Keri L. Bowering, Kate A. Edwards, and Susan E. Ziegler
Biogeosciences, 20, 2189–2206, https://doi.org/10.5194/bg-20-2189-2023, https://doi.org/10.5194/bg-20-2189-2023, 2023
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Dissolved organic matter (DOM) mobilized from surface soils is a source of carbon (C) for deeper mineral horizons but also a mechanism of C loss. Composition of DOM mobilized in boreal forests varied more by season than as a result of forest harvesting. Results suggest reduced snowmelt and increased fall precipitation enhance DOM properties promoting mineral soil C stores. These findings, coupled with hydrology, can inform on soil C fate and boreal forest C balance in response to climate change.
Bharat Sharma, Jitendra Kumar, Auroop R. Ganguly, and Forrest M. Hoffman
Biogeosciences, 20, 1829–1841, https://doi.org/10.5194/bg-20-1829-2023, https://doi.org/10.5194/bg-20-1829-2023, 2023
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Rising atmospheric carbon dioxide increases vegetation growth and causes more heatwaves and droughts. The impact of such climate extremes is detrimental to terrestrial carbon uptake capacity. We found that due to overall climate warming, about 88 % of the world's regions towards the end of 2100 will show anomalous losses in net biospheric productivity (NBP) rather than gains. More than 50 % of all negative NBP extremes were driven by the compound effect of dry, hot, and fire conditions.
Britta Greenshields, Barbara von der Lühe, Felix Schwarz, Harold J. Hughes, Aiyen Tjoa, Martyna Kotowska, Fabian Brambach, and Daniela Sauer
Biogeosciences, 20, 1259–1276, https://doi.org/10.5194/bg-20-1259-2023, https://doi.org/10.5194/bg-20-1259-2023, 2023
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Silicon (Si) can have multiple beneficial effects on crops such as oil palms. In this study, we quantified Si concentrations in various parts of an oil palm (leaflets, rachises, fruit-bunch parts) to derive Si storage estimates for the total above-ground biomass of an oil palm and 1 ha of an oil-palm plantation. We proposed a Si balance by identifying Si return (via palm fronds) and losses (via harvest) in the system and recommend management measures that enhance Si cycling.
Luisa Schmidt, Matthias Forkel, Ruxandra-Maria Zotta, Samuel Scherrer, Wouter A. Dorigo, Alexander Kuhn-Régnier, Robin van der Schalie, and Marta Yebra
Biogeosciences, 20, 1027–1046, https://doi.org/10.5194/bg-20-1027-2023, https://doi.org/10.5194/bg-20-1027-2023, 2023
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Vegetation attenuates natural microwave emissions from the land surface. The strength of this attenuation is quantified as the vegetation optical depth (VOD) parameter and is influenced by the vegetation mass, structure, water content, and observation wavelength. Here we model the VOD signal as a multi-variate function of several descriptive vegetation variables. The results help in understanding the effects of ecosystem properties on VOD.
Nagham Tabaja, David Amouroux, Lamis Chalak, François Fourel, Emmanuel Tessier, Ihab Jomaa, Milad El Riachy, and Ilham Bentaleb
Biogeosciences, 20, 619–633, https://doi.org/10.5194/bg-20-619-2023, https://doi.org/10.5194/bg-20-619-2023, 2023
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This study investigates the seasonality of the mercury (Hg) concentration of olive trees. Hg concentrations of foliage, stems, soil surface, and litter were analyzed on a monthly basis in ancient olive trees growing in two groves in Lebanon. Our study draws an adequate baseline for the eastern Mediterranean and for the region with similar climatic inventories on Hg vegetation uptake in addition to being a baseline for new studies on olive trees in the Mediterranean.
Allison N. Myers-Pigg, Karl Kaiser, Ronald Benner, and Susan E. Ziegler
Biogeosciences, 20, 489–503, https://doi.org/10.5194/bg-20-489-2023, https://doi.org/10.5194/bg-20-489-2023, 2023
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Boreal forests, historically a global sink for atmospheric CO2, store carbon in vast soil reservoirs. To predict how such stores will respond to climate warming we need to understand climate–ecosystem feedbacks. We find boreal forest soil carbon stores are maintained through enhanced nitrogen cycling with climate warming, providing direct evidence for a key feedback. Further application of the approach demonstrated here will improve our understanding of the limits of climate–ecosystem feedbacks.
Matthew P. Dannenberg, Mallory L. Barnes, William K. Smith, Miriam R. Johnston, Susan K. Meerdink, Xian Wang, Russell L. Scott, and Joel A. Biederman
Biogeosciences, 20, 383–404, https://doi.org/10.5194/bg-20-383-2023, https://doi.org/10.5194/bg-20-383-2023, 2023
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Earth's drylands provide ecosystem services to many people and will likely be strongly affected by climate change, but it is quite challenging to monitor the productivity and water use of dryland plants with satellites. We developed and tested an approach for estimating dryland vegetation activity using machine learning to combine information from multiple satellite sensors. Our approach excelled at estimating photosynthesis and water use largely due to the inclusion of satellite soil moisture.
Mark Pickering, Alessandro Cescatti, and Gregory Duveiller
Biogeosciences, 19, 4833–4864, https://doi.org/10.5194/bg-19-4833-2022, https://doi.org/10.5194/bg-19-4833-2022, 2022
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This study explores two of the most recent products in carbon productivity estimation, FLUXCOM gross primary productivity (GPP), calculated by upscaling local measurements of CO2 exchange, and remotely sensed sun-induced chlorophyll a fluorescence (SIF). High-resolution SIF data are valuable in demonstrating similarity in the SIF–GPP relationship between vegetation covers, provide an independent probe of the FLUXCOM GPP model and demonstrate the response of SIF to meteorological fluctuations.
Sophia Walther, Simon Besnard, Jacob Allen Nelson, Tarek Sebastian El-Madany, Mirco Migliavacca, Ulrich Weber, Nuno Carvalhais, Sofia Lorena Ermida, Christian Brümmer, Frederik Schrader, Anatoly Stanislavovich Prokushkin, Alexey Vasilevich Panov, and Martin Jung
Biogeosciences, 19, 2805–2840, https://doi.org/10.5194/bg-19-2805-2022, https://doi.org/10.5194/bg-19-2805-2022, 2022
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Satellite observations help interpret station measurements of local carbon, water, and energy exchange between the land surface and the atmosphere and are indispensable for simulations of the same in land surface models and their evaluation. We propose generalisable and efficient approaches to systematically ensure high quality and to estimate values in data gaps. We apply them to satellite data of surface reflectance and temperature with different resolutions at the stations.
Elisabeth Mauclet, Yannick Agnan, Catherine Hirst, Arthur Monhonval, Benoît Pereira, Aubry Vandeuren, Maëlle Villani, Justin Ledman, Meghan Taylor, Briana L. Jasinski, Edward A. G. Schuur, and Sophie Opfergelt
Biogeosciences, 19, 2333–2351, https://doi.org/10.5194/bg-19-2333-2022, https://doi.org/10.5194/bg-19-2333-2022, 2022
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Arctic warming and permafrost degradation largely affect tundra vegetation. Wetter lowlands show an increase in sedges, whereas drier uplands favor shrub expansion. Here, we demonstrate that the difference in the foliar elemental composition of typical tundra vegetation species controls the change in local foliar elemental stock and potential mineral element cycling through litter production upon a shift in tundra vegetation.
Tiexi Chen, Renjie Guo, Qingyun Yan, Xin Chen, Shengjie Zhou, Chuanzhuang Liang, Xueqiong Wei, and Han Dolman
Biogeosciences, 19, 1515–1525, https://doi.org/10.5194/bg-19-1515-2022, https://doi.org/10.5194/bg-19-1515-2022, 2022
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Currently people are very concerned about vegetation changes and their driving factors, including natural and anthropogenic drivers. In this study, a general browning trend is found in Syria during 2001–2018, indicated by the vegetation index. We found that land management caused by social unrest is the main cause of this browning phenomenon. The mechanism initially reported here highlights the importance of land management impacts at the regional scale.
Rahayu Adzhar, Douglas I. Kelley, Ning Dong, Charles George, Mireia Torello Raventos, Elmar Veenendaal, Ted R. Feldpausch, Oliver L. Phillips, Simon L. Lewis, Bonaventure Sonké, Herman Taedoumg, Beatriz Schwantes Marimon, Tomas Domingues, Luzmila Arroyo, Gloria Djagbletey, Gustavo Saiz, and France Gerard
Biogeosciences, 19, 1377–1394, https://doi.org/10.5194/bg-19-1377-2022, https://doi.org/10.5194/bg-19-1377-2022, 2022
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The MODIS Vegetation Continuous Fields (VCF) product underestimates tree cover compared to field data and could be underestimating tree cover significantly across the tropics. VCF is used to represent land cover or validate model performance in many land surface and global vegetation models and to train finer-scaled Earth observation products. Because underestimation in VCF may render it unsuitable for training data and bias model predictions, it should be calibrated before use in the tropics.
Lina Teckentrup, Martin G. De Kauwe, Andrew J. Pitman, Daniel S. Goll, Vanessa Haverd, Atul K. Jain, Emilie Joetzjer, Etsushi Kato, Sebastian Lienert, Danica Lombardozzi, Patrick C. McGuire, Joe R. Melton, Julia E. M. S. Nabel, Julia Pongratz, Stephen Sitch, Anthony P. Walker, and Sönke Zaehle
Biogeosciences, 18, 5639–5668, https://doi.org/10.5194/bg-18-5639-2021, https://doi.org/10.5194/bg-18-5639-2021, 2021
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The Australian continent is included in global assessments of the carbon cycle such as the global carbon budget, yet the performance of dynamic global vegetation models (DGVMs) over Australia has rarely been evaluated. We assessed simulations by an ensemble of dynamic global vegetation models over Australia and highlighted a number of key areas that lead to model divergence on both short (inter-annual) and long (decadal) timescales.
Juhwan Lee, Raphael A. Viscarra Rossel, Mingxi Zhang, Zhongkui Luo, and Ying-Ping Wang
Biogeosciences, 18, 5185–5202, https://doi.org/10.5194/bg-18-5185-2021, https://doi.org/10.5194/bg-18-5185-2021, 2021
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We performed Roth C simulations across Australia and assessed the response of soil carbon to changing inputs and future climate change using a consistent modelling framework. Site-specific initialisation of the C pools with measurements of the C fractions is essential for accurate simulations of soil organic C stocks and composition at a large scale. With further warming, Australian soils will become more vulnerable to C loss: natural environments > native grazing > cropping > modified grazing.
Anam M. Khan, Paul C. Stoy, James T. Douglas, Martha Anderson, George Diak, Jason A. Otkin, Christopher Hain, Elizabeth M. Rehbein, and Joel McCorkel
Biogeosciences, 18, 4117–4141, https://doi.org/10.5194/bg-18-4117-2021, https://doi.org/10.5194/bg-18-4117-2021, 2021
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Remote sensing has played an important role in the study of land surface processes. Geostationary satellites, such as the GOES-R series, can observe the Earth every 5–15 min, providing us with more observations than widely used polar-orbiting satellites. Here, we outline current efforts utilizing geostationary observations in environmental science and look towards the future of GOES observations in the carbon cycle, ecosystem disturbance, and other areas of application in environmental science.
Lydia Stolpmann, Caroline Coch, Anne Morgenstern, Julia Boike, Michael Fritz, Ulrike Herzschuh, Kathleen Stoof-Leichsenring, Yury Dvornikov, Birgit Heim, Josefine Lenz, Amy Larsen, Katey Walter Anthony, Benjamin Jones, Karen Frey, and Guido Grosse
Biogeosciences, 18, 3917–3936, https://doi.org/10.5194/bg-18-3917-2021, https://doi.org/10.5194/bg-18-3917-2021, 2021
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Our new database summarizes DOC concentrations of 2167 water samples from 1833 lakes in permafrost regions across the Arctic to provide insights into linkages between DOC and environment. We found increasing lake DOC concentration with decreasing permafrost extent and higher DOC concentrations in boreal permafrost sites compared to tundra sites. Our study shows that DOC concentration depends on the environmental properties of a lake, especially permafrost extent, ecoregion, and vegetation.
Gustaf Granath, Christopher D. Evans, Joachim Strengbom, Jens Fölster, Achim Grelle, Johan Strömqvist, and Stephan J. Köhler
Biogeosciences, 18, 3243–3261, https://doi.org/10.5194/bg-18-3243-2021, https://doi.org/10.5194/bg-18-3243-2021, 2021
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We measured element losses and impacts on water quality following a wildfire in Sweden. We observed the largest carbon and nitrogen losses during the fire and a strong pulse of elements 1–3 months after the fire that showed a fast (weeks) and a slow (months) release from the catchments. Total carbon export through water did not increase post-fire. Overall, we observed a rapid recovery of the biogeochemical cycling of elements within 3 years but still an annual net release of carbon dioxide.
Lina Teckentrup, Martin G. De Kauwe, Andrew J. Pitman, and Benjamin Smith
Biogeosciences, 18, 2181–2203, https://doi.org/10.5194/bg-18-2181-2021, https://doi.org/10.5194/bg-18-2181-2021, 2021
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The El Niño–Southern Oscillation (ENSO) describes changes in the sea surface temperature patterns of the Pacific Ocean. This influences the global weather, impacting vegetation on land. There are two types of El Niño: central Pacific (CP) and eastern Pacific (EP). In this study, we explored the long-term impacts on the carbon balance on land linked to the two El Niño types. Using a dynamic vegetation model, we simulated what would happen if only either CP or EP El Niño events had occurred.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 18, 2075–2090, https://doi.org/10.5194/bg-18-2075-2021, https://doi.org/10.5194/bg-18-2075-2021, 2021
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Grassland ecosystem services like forage production and greenhouse gas storage in the soil depend on plant growth.
In an experiment in the mountains with warming treatments, we found that despite dwindling soil water content, the grassland growth increased with up to +1.3 °C warming (annual mean) compared to present temperatures. Even at +2.4 °C the growth was still larger than at the reference site.
This suggests that plant growth will increase due to global warming in the near future.
Bernice C. Hwang and Daniel B. Metcalfe
Biogeosciences, 18, 1259–1268, https://doi.org/10.5194/bg-18-1259-2021, https://doi.org/10.5194/bg-18-1259-2021, 2021
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Despite growing recognition of herbivores as important ecosystem engineers, many major gaps remain in our understanding of how silicon and herbivory interact to shape biogeochemical processes. We highlight the need for more research particularly in natural settings as well as on the potential effects of herbivory on terrestrial silicon cycling to understand potentially critical animal–plant–soil feedbacks.
Ali Asaadi and Vivek K. Arora
Biogeosciences, 18, 669–706, https://doi.org/10.5194/bg-18-669-2021, https://doi.org/10.5194/bg-18-669-2021, 2021
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More than a quarter of the current anthropogenic CO2 emissions are taken up by land, reducing the atmospheric CO2 growth rate. This is because of the CO2 fertilization effect which benefits 80 % of global vegetation. However, if nitrogen and phosphorus nutrients cannot keep up with increasing atmospheric CO2, the magnitude of this terrestrial ecosystem service may reduce in future. This paper implements nitrogen constraints on photosynthesis in a model to understand the mechanisms involved.
Arianna Peron, Lisa Kaser, Anne Charlott Fitzky, Martin Graus, Heidi Halbwirth, Jürgen Greiner, Georg Wohlfahrt, Boris Rewald, Hans Sandén, and Thomas Karl
Biogeosciences, 18, 535–556, https://doi.org/10.5194/bg-18-535-2021, https://doi.org/10.5194/bg-18-535-2021, 2021
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Drought events are expected to become more frequent with climate change. Along with these events atmospheric ozone is also expected to increase. Both can stress plants. Here we investigate to what extent these factors modulate the emission of volatile organic compounds (VOCs) from oak plants. We find an antagonistic effect between drought stress and ozone, impacting the emission of different BVOCs, which is indirectly controlled by stomatal opening, allowing plants to control their water budget.
Lena Wohlgemuth, Stefan Osterwalder, Carl Joseph, Ansgar Kahmen, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 17, 6441–6456, https://doi.org/10.5194/bg-17-6441-2020, https://doi.org/10.5194/bg-17-6441-2020, 2020
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Mercury uptake by trees from the air represents an important but poorly quantified pathway in the global mercury cycle. We determined mercury uptake fluxes by leaves and needles at 10 European forests which were 4 times larger than mercury deposition via rainfall. The amount of mercury taken up by leaves and needles depends on their age and growing height on the tree. Scaling up our measurements to the forest area of Europe, we estimate that each year 20 t of mercury is taken up by trees.
A. Anthony Bloom, Kevin W. Bowman, Junjie Liu, Alexandra G. Konings, John R. Worden, Nicholas C. Parazoo, Victoria Meyer, John T. Reager, Helen M. Worden, Zhe Jiang, Gregory R. Quetin, T. Luke Smallman, Jean-François Exbrayat, Yi Yin, Sassan S. Saatchi, Mathew Williams, and David S. Schimel
Biogeosciences, 17, 6393–6422, https://doi.org/10.5194/bg-17-6393-2020, https://doi.org/10.5194/bg-17-6393-2020, 2020
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We use a model of the 2001–2015 tropical land carbon cycle, with satellite measurements of land and atmospheric carbon, to disentangle lagged and concurrent effects (due to past and concurrent meteorological events, respectively) on annual land–atmosphere carbon exchanges. The variability of lagged effects explains most 2001–2015 inter-annual carbon flux variations. We conclude that concurrent and lagged effects need to be accurately resolved to better predict the world's land carbon sink.
Erqian Cui, Chenyu Bian, Yiqi Luo, Shuli Niu, Yingping Wang, and Jianyang Xia
Biogeosciences, 17, 6237–6246, https://doi.org/10.5194/bg-17-6237-2020, https://doi.org/10.5194/bg-17-6237-2020, 2020
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Mean annual net ecosystem productivity (NEP) is related to the magnitude of the carbon sink of a specific ecosystem, while its inter-annual variation (IAVNEP) characterizes the stability of such a carbon sink. Thus, a better understanding of the co-varying NEP and IAVNEP is critical for locating the major and stable carbon sinks on land. Based on daily NEP observations from eddy-covariance sites, we found local indicators for the spatially varying NEP and IAVNEP, respectively.
Taraka Davies-Barnard, Johannes Meyerholt, Sönke Zaehle, Pierre Friedlingstein, Victor Brovkin, Yuanchao Fan, Rosie A. Fisher, Chris D. Jones, Hanna Lee, Daniele Peano, Benjamin Smith, David Wårlind, and Andy J. Wiltshire
Biogeosciences, 17, 5129–5148, https://doi.org/10.5194/bg-17-5129-2020, https://doi.org/10.5194/bg-17-5129-2020, 2020
Jarmo Mäkelä, Francesco Minunno, Tuula Aalto, Annikki Mäkelä, Tiina Markkanen, and Mikko Peltoniemi
Biogeosciences, 17, 2681–2700, https://doi.org/10.5194/bg-17-2681-2020, https://doi.org/10.5194/bg-17-2681-2020, 2020
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We assess the relative magnitude of uncertainty sources on ecosystem indicators of the 21st century climate change on two boreal forest sites. In addition to RCP and climate model uncertainties, we included the overlooked model parameter uncertainty and management actions in our analysis. Management was the dominant uncertainty factor for the more verdant southern site, followed by RCP, climate and parameter uncertainties. The uncertainties were estimated with canonical correlation analysis.
Guido Kraemer, Gustau Camps-Valls, Markus Reichstein, and Miguel D. Mahecha
Biogeosciences, 17, 2397–2424, https://doi.org/10.5194/bg-17-2397-2020, https://doi.org/10.5194/bg-17-2397-2020, 2020
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To closely monitor the state of our planet, we require systems that can monitor
the observation of many different properties at the same time. We create
indicators that resemble the behavior of many different simultaneous
observations. We apply the method to create indicators representing the
Earth's biosphere. The indicators show a productivity gradient and a water
gradient. The resulting indicators can detect a large number of changes and
extremes in the Earth system.
Barbara Marcolla, Mirco Migliavacca, Christian Rödenbeck, and Alessandro Cescatti
Biogeosciences, 17, 2365–2379, https://doi.org/10.5194/bg-17-2365-2020, https://doi.org/10.5194/bg-17-2365-2020, 2020
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This work investigates the sensitivity of terrestrial CO2 fluxes to climate drivers. We observed that CO2 flux is mostly controlled by temperature during the growing season and by radiation off season. We also observe that radiation importance is increasing over time while sensitivity to temperature is decreasing in Eurasia. Ultimately this analysis shows that ecosystem response to climate is changing, with potential repercussions for future terrestrial sink and land role in climate mitigation.
Stephanie C. Pennington, Nate G. McDowell, J. Patrick Megonigal, James C. Stegen, and Ben Bond-Lamberty
Biogeosciences, 17, 771–780, https://doi.org/10.5194/bg-17-771-2020, https://doi.org/10.5194/bg-17-771-2020, 2020
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Soil respiration (Rs) is the flow of CO2 from the soil surface to the atmosphere and is one of the largest carbon fluxes on land. This study examined the effect of local basal area (tree area) on Rs in a coastal forest in eastern Maryland, USA. Rs measurements were taken as well as distance from soil collar, diameter, and species of each tree within a 15 m radius. We found that trees within 5 m of our sampling points had a positive effect on how sensitive soil respiration was to temperature.
Keri L. Bowering, Kate A. Edwards, Karen Prestegaard, Xinbiao Zhu, and Susan E. Ziegler
Biogeosciences, 17, 581–595, https://doi.org/10.5194/bg-17-581-2020, https://doi.org/10.5194/bg-17-581-2020, 2020
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We examined the effects of season and tree harvesting on the flow of water and the organic carbon (OC) it carries from boreal forest soils. We found that more OC was lost from the harvested forest because more precipitation reached the soil surface but that during periods of flushing in autumn and snowmelt a limit on the amount of water-extractable OC is reached. These results contribute to an increased understanding of carbon loss from boreal forest soils.
Jason Philip Kaye, Susan L. Brantley, Jennifer Zan Williams, and the SSHCZO team
Biogeosciences, 16, 4661–4669, https://doi.org/10.5194/bg-16-4661-2019, https://doi.org/10.5194/bg-16-4661-2019, 2019
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Interdisciplinary teams can only capitalize on innovative ideas if members work well together through collegial and efficient use of field sites, instrumentation, samples, data, and model code. Thus, biogeoscience teams may benefit from developing a set of best practices for collaboration. We present one such example from a the Susquehanna Shale Hills critical zone observatory. Many of the themes from our example are universal, and they offer insights useful to other biogeoscience teams.
Anne Alexandre, Elizabeth Webb, Amaelle Landais, Clément Piel, Sébastien Devidal, Corinne Sonzogni, Martine Couapel, Jean-Charles Mazur, Monique Pierre, Frédéric Prié, Christine Vallet-Coulomb, Clément Outrequin, and Jacques Roy
Biogeosciences, 16, 4613–4625, https://doi.org/10.5194/bg-16-4613-2019, https://doi.org/10.5194/bg-16-4613-2019, 2019
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This calibration study shows that despite isotope heterogeneity along grass leaves, the triple oxygen isotope composition of bulk leaf phytoliths can be estimated from the Craig and Gordon model, a mixing equation and a mean leaf water–phytolith fractionation exponent (lambda) of 0.521. The results strengthen the reliability of the 17O–excess of phytoliths to be used as a proxy of atmospheric relative humidity and open tracks for its use as an imprint of leaf water 17O–excess.
Lina Teckentrup, Sandy P. Harrison, Stijn Hantson, Angelika Heil, Joe R. Melton, Matthew Forrest, Fang Li, Chao Yue, Almut Arneth, Thomas Hickler, Stephen Sitch, and Gitta Lasslop
Biogeosciences, 16, 3883–3910, https://doi.org/10.5194/bg-16-3883-2019, https://doi.org/10.5194/bg-16-3883-2019, 2019
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This study compares simulated burned area of seven global vegetation models provided by the Fire Model Intercomparison Project (FireMIP) since 1900. We investigate the influence of five forcing factors: atmospheric CO2, population density, land–use change, lightning and climate.
We find that the anthropogenic factors lead to the largest spread between models. Trends due to climate are mostly not significant but climate strongly influences the inter-annual variability of burned area.
Cited articles
Adams, W. W. and Demmig-Adams, B.: Carotenoid composition and down regulation
of photosystem II in three conifer species during the winter, Physiol.
Plantarum, 92, 451–458, https://doi.org/10.1111/j.1399-3054.1994.tb08835.x,
1994. a
Ahlström, A., Schurgers, G., Arneth, A., and Smith, B.: Robustness and
uncertainty in terrestrial ecosystem carbon response to CMIP5 climate change
projections, Environ. Res. Lett., 7, 044008,
https://doi.org/10.1088/1748-9326/7/4/044008,
2012. a
Ali, A. M., Darvishzadeh, R., Skidmore, A. K., van Duren, I., Heiden, U., and
Heurich, M.: Estimating leaf functional traits by inversion of PROSPECT:
Assessing leaf dry matter content and specific leaf area in mixed mountainous
forest, Int. J. Appl. Earth Obs., 45, 66–76, 2016. a
Asner, G. P., Martin, R. E., Knapp, D. E., Tupayachi, R., Anderson, C.,
Carranza, L., Martinez, P., Houcheime, M., Sinca, F., and Weiss, P.:
Spectroscopy of canopy chemicals in humid tropical forests, Remote Sens. Environ., 115, 3587–3598, https://doi.org/10.1016/J.RSE.2011.08.020,
2011. a
Badgley, G., Field, C. B., and Berry, J. A.: Canopy near-infrared reflectance
and terrestrial photosynthesis, Sci. Adv., 3, e1602244,
https://doi.org/10.1126/sciadv.1602244,
2017. a
Baldocchi, D., Falge, E., Gu, L., Olson, R., Hollinger, D., Running, S.,
Anthoni, P., Bernhofer, C., Davis, K., Evans, R., Fuentes, J., Goldstein, A., Katul, G., Law, B., Lee, X., Malhi, Y., Meyers, T., Munger, W., Oechel, W., Paw U, K. T., Pilegaard, K., Schmid, H. P., Valentini, R., Verma, S., Vesala, T., Wilson, K., and Wofsy, S.: FLUXNET: A new tool
to study the temporal and spatial variability of ecosystem-scale carbon
dioxide, water vapor, and energy flux densities, B. Am.
Meteorol. Soc., 82, 2415–2434, 2001. a
Barnes, M. L., Breshears, D. D., Law, D. J., van Leeuwen, W. J. D., Monson,
R. K., Fojtik, A. C., Barron-Gafford, G. A., and Moore, D. J. P.: Beyond
greenness: Detecting temporal changes in photosynthetic capacity with
hyperspectral reflectance data, PLOS ONE, 12, e0189539,
https://doi.org/10.1371/journal.pone.0189539, 2017. a, b
Blanken, P. D., Monson, R. K., Burns, S. P., Bowling, D. R., and Turnipseed,
A. A.: Data and information for the AmeriFlux US-NR1 Niwot Ridge
Subalpine Forest (LTER NWT1) Site, AmeriFlux Management Project,
Berkeley, CA, Lawrence Berkeley National Laboratory,
https://doi.org/10.17190/AMF/1246088, 2019. a
Bowling, D. and Logan, B.: Carbon Monitoring System (CMS)Conifer
Needle Pigment Composition, Niwot Ridge, Colorado, USA,
2017–2018, 0.021358 MB, https://doi.org/10.3334/ORNLDAAC/1723, 2019. a
Bowling, D. R., Logan, B. A., Hufkens, K., Aubrecht, D. M., Richardson, A. D.,
Burns, S. P., Anderegg, W. R., Blanken, P. D., and Eiriksson, D. P.:
Limitations to winter and spring photosynthesis of a Rocky Mountain
subalpine forest, Agr. Forest Meteorol., 252, 241–255,
https://doi.org/10.1016/J.AGRFORMET.2018.01.025,
2018. a, b, c, d, e, f, g, h, i
Burns, S. P., Blanken, P. D., Turnipseed, A. A., Hu, J., and Monson, R. K.: The influence of warm-season precipitation on the diel cycle of the surface energy balance and carbon dioxide at a Colorado subalpine forest site, Biogeosciences, 12, 7349–7377, https://doi.org/10.5194/bg-12-7349-2015, 2015. a, b
Burns, S. P., Maclean, G. D., Blanken, P. D., Oncley, S. P., Semmer, S. R., and Monson, R. K.: The Niwot Ridge Subalpine Forest US-NR1 AmeriFlux site – Part 1: Data acquisition and site record-keeping, Geosci. Instrum. Method. Data Syst., 5, 451–471, https://doi.org/10.5194/gi-5-451-2016, 2016. a, b, c, d
Cheng, R., Frankenberg, C., Magney, T., Grossmann, K., Bowling, D., Burns, S., Stutz, J., and Blanken, P.: Hyperspectral reflectance at Niwot Ridge, Colorado (Version 1.0) [Data set], CaltechDATA, https://doi.org/10.22002/D1.1597, 2020. a
Ciais, P., Sabine, C., Bala, G., Bopp, L., Brovkin, V., Canadell, J., Chhabra,
R., DeFries, R., Galloway, J., Heimann, M., Jones, C., Le
Quéré, C., Myneni, R., Piao, S., and Thornton, P.: Carbon and
Other Biogeochemical Cycles, in: Climate Change 2013: The Physical Science
Basis. Contribution of Working Group I to the Fifth Assessment Report of the
Intergovernmental Panel on Climate Change, edited by: Stock, T., Qin, D.,
Plattner, G.-K., Tignor, M., Allen, S., Boschung, J., Nauels, A., Xia, Y.,
Bex, V., and Midgley, P., chap. 6, 465–570, Cambridge University Press,
Cambridge, United Kingdom and New York, NY, USA,
https://doi.org/10.1017/CBO9781107415324.015, 2013. a
CliMA: Land, GitHub, available at: https://github.com/CliMA/Land, last access: 6 February 2020. a
Comon, P.: Independent component analysis, a new concept?, Signal Processing,
36, 287–314, 1994. a
Dawson, T. P., Curran, P. J., and Plummer, S. E.: LIBERTY–Modeling the
effects of leaf biochemical concentration on reflectance spectra, Remote
Sens. Environ., 65, 50–60, 1998. a
Dechant, B., Cuntz, M., Vohland, M., Schulz, E., and Doktor, D.: Estimation of
photosynthesis traits from leaf reflectance spectra: correlation to nitrogen
content as the dominant mechanism, Remote Sens. Environ., 196,
279–292, 2017. a
Dechant, B., Ryu, Y., and Kang, M.: Making full use of hyperspectral data for
gross primary productivity estimation with multivariate regression:
Mechanistic insights from observations and process-based simulations, Remote
Sens. Environ., 234, 111435, https://doi.org/10.1016/j.rse.2019.111435, 2019. a
Demmig-Adams, B. and Adams, W. W.: The role of xanthophyll cycle carotenoids
in the protection of photosynthesis, Trend Plant Sci., 1, 21–26,
https://doi.org/10.1016/S1360-1385(96)80019-7,
1996. a
de Tomás Marín, S., Novák, M., Klančnik, K., and
Gaberščik, A.: Spectral signatures of conifer needles mainly
depend on their physical traits, Pol. J. Ecol., 64, 1–14, 2016. a
DuBois, S., Desai, A. R., Singh, A., Serbin, S. P., Goulden, M. L., Baldocchi,
D. D., Ma, S., Oechel, W. C., Wharton, S., Kruger, E. L., and Townsend, P. A.: Using
imaging spectroscopy to detect variation in terrestrial ecosystem
productivity across a water-stressed landscape, Ecol. Appl., 28,
1313–1324, 2018. a
Dutta, D., Schimel, D. S., Sun, Y., van der Tol, C., and Frankenberg, C.: Optimal inverse estimation of ecosystem parameters from observations of carbon and energy fluxes, Biogeosciences, 16, 77–103, https://doi.org/10.5194/bg-16-77-2019, 2019. a
Dye, D. G.: Spectral composition and quanta-to-energy ratio of diffuse
photosynthetically active radiation under diverse cloud conditions, J. Geophys. Res., 109, D10203, https://doi.org/10.1029/2003JD004251, 2004. a
Farquhar, G. D., von Caemmerer, S., and Berry, J. A.: A biochemical model of
photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149,
78–90, https://doi.org/10.1007/BF00386231, 1980. a
Feret, J.-B., François, C., Asner, G. P., Gitelson, A. A., Martin, R. E.,
Bidel, L. P., Ustin, S. L., le Maire, G., and Jacquemoud, S.: PROSPECT-4 and
5: Advances in the leaf optical properties model separating photosynthetic
pigments, Remote Sens. Environ., 112, 3030–3043,
https://doi.org/10.1016/J.RSE.2008.02.012,
2008. a
Féret, J. B., Gitelson, A. A., Noble, S. D., and Jacquemoud, S.:
PROSPECT-D: Towards modeling leaf optical properties through a complete
lifecycle, Remote Sens. Environ., 193, 204–215,
https://doi.org/10.1016/j.rse.2017.03.004, 2017. a, b, c
Féret, J.-B., Le Maire, G., Jay, S., Berveiller, D., Bendoula, R., Hmimina,
G., Cheraiet, A., Oliveira, J., Ponzoni, F., Solanki, T., de Boissieu, F.,
Chave, J., Nouvellon, Y., Porcar-Castell, A., Proisy, C., Soudani, K., Gastellu-Etchegorry, J.-P., and Lefèvre-Fonollosa, M.-J.: Estimating
leaf mass per area and equivalent water thickness based on leaf optical
properties: Potential and limitations of physical modeling and machine
learning, Remote Sens. Environ., 231, 110959, 2019. a
Gamon, J., Peñuelas, J., and Field, C.: A narrow-waveband spectral index
that tracks diurnal changes in photosynthetic efficiency, Remote Sens.
Environ., 41, 35–44, https://doi.org/10.1016/0034-4257(92)90059-S,
1992. a, b, c
Gamon, J., Rahman, A., Dungan, J., Schildhauer, M., and Huemmrich, K.:
Spectral Network (SpecNet) – What is it and why do we need it?, Remote
Sens. Environ., 103, 227–235, https://doi.org/10.1016/J.RSE.2006.04.003,
2006. a
Gamon, J. A., Serrano, L., and Surfus, J. S.: The photochemical reflectance
index: an optical indicator of photosynthetic radiation use efficiency across
species, functional types, and nutrient levels, Oecologia, 112, 492–501,
https://doi.org/10.1007/s004420050337, 1997. a
Gamon, J. A., Huemmrich, K. F., Wong, C. Y. S., Ensminger, I., Garrity, S.,
Hollinger, D. Y., Noormets, A., and Peñuelas, J.: A remotely sensed
pigment index reveals photosynthetic phenology in evergreen conifers.,
P. Natl. Acad. Sci. USA, 113, 13087–13092, https://doi.org/10.1073/pnas.1606162113, 2016. a, b, c, d, e, f
Garbulsky, M. F., Peñuelas, J., Gamon, J., Inoue, Y., and Filella, I.: The
photochemical reflectance index (PRI) and the remote sensing of leaf, canopy
and ecosystem radiation use efficiencies: A review and meta-analysis, Remote
Sens. Environ., 115, 281–297, 2011. a
Geladi, P. and Kowalski, B. R.: Partial least-squares regression: a tutorial,
Anal. Chim. Acta, 185, 1–17, https://doi.org/10.1016/0003-2670(86)80028-9,
1986. a
Gentine, P. and Alemohammad, S. H.: Reconstructed Solar-Induced Fluorescence:
A Machine Learning Vegetation Product Based on MODIS Surface Reflectance to
Reproduce GOME-2 Solar-Induced Fluorescence, Geophys. Res. Lett.,
45, 3136–3146, https://doi.org/10.1002/2017GL076294, 2018. a, b
Glenn, E., Huete, A., Nagler, P., Nelson, S., Glenn, E. P., Huete, A. R.,
Nagler, P. L., and Nelson, S. G.: Relationship Between Remotely-sensed
Vegetation Indices, Canopy Attributes and Plant Physiological Processes: What
Vegetation Indices Can and Cannot Tell Us About the Landscape, Sensors, 8,
2136–2160, https://doi.org/10.3390/s8042136, 2008. a
Gould, K. S.: Nature's Swiss army knife: the diverse protective roles of
anthocyanins in leaves, BioMed Research International, 2004, 314–320, 2004. a
Goulden, M. L., Munger, J. W., Fan, S.-M., Daube, B. C., and Wofsy, S. C.:
Measurements of carbon sequestration by long-term eddy covariance: methods
and a critical evaluation of accuracy, Glob. Change Biol., 2, 169–182,
https://doi.org/10.1111/j.1365-2486.1996.tb00070.x,
1996. a
Grossmann, K., Frankenberg, C., Magney, T. S., Hurlock, S. C., Seibt, U., and
Stutz, J.: PhotoSpec: A new instrument to measure spatially distributed red
and far-red Solar-Induced Chlorophyll Fluorescence, Remote Sens.
Environ., 216, 311–327, https://doi.org/10.1016/J.RSE.2018.07.002,
2018. a, b, c, d
Guanter, L., Zhang, Y., Jung, M., Joiner, J., Voigt, M., Berry, J. A.,
Frankenberg, C., Huete, A. R., Zarco-Tejada, P., Lee, J.-E., Moran, M. S., Ponce-Campos, G., Beer, C., Camps-Valls, G., Buchmann, N., Gianelle, D., Klumpp, K., Cescatti, A., Baker, J. M., and Griffis, T. J.: Global
and time-resolved monitoring of crop photosynthesis with chlorophyll
fluorescence, P. Natl. Acad. Sci. USA, 111,
E1327–E1333, 2014. a
Hall, F. G., Hilker, T., Coops, N. C., Lyapustin, A., Huemmrich, K. F.,
Middleton, E., Margolis, H., Drolet, G., and Black, T. A.: Multi-angle
remote sensing of forest light use efficiency by observing PRI variation with
canopy shadow fraction, Remote Sens. Environ., 112, 3201–3211,
https://doi.org/10.1016/J.RSE.2008.03.015,
2008. a
Harbinson, J.: Modeling the protection of photosynthesis, P.
Natl. Acad. Sci. USA, 109,
15533–15534, https://doi.org/10.1073/pnas.1213195109, 2012. a
Hilker, T., Coops, N. C., Hall, F. G., Nichol, C. J., Lyapustin, A., Black,
T. A., Wulder, M. A., Leuning, R., Barr, A., Hollinger, D. Y., Munger, B.,
and Tucker, C. J.: Inferring terrestrial photosynthetic light use efficiency
of temperate ecosystems from space, J. Geophys. Res., 116,
G03014, https://doi.org/10.1029/2011JG001692,
2011a. a
Hilker, T., Gitelson, A., Coops, N. C., Hall, F. G., and Black, T. A.:
Tracking plant physiological properties from multi-angular tower-based
remote sensing, Oecologia, 165, 865–876, https://doi.org/10.1007/s00442-010-1901-0,
2011b. a
Horler, D. N. H., Dockray, M., and Barber, J.: The red edge of plant leaf
reflectance, Int. J. Remote Sens., 4, 273–288,
https://doi.org/10.1080/01431168308948546,
1983. a
Huemmrich, K. F., Campbell, P. K. E., Gao, B.-C., Flanagan, L. B., and Goulden,
M.: ISS as a Platform for Optical Remote Sensing of Ecosystem Carbon Fluxes:
A Case Study Using HICO, IEEE J. Sel. Top. Appl., 10, 4360–4375,
https://doi.org/10.1109/JSTARS.2017.2725825, 2017. a
Huemmrich, K. F., Campbell, P., Landis, D., and Middleton, E.: Developing a
common globally applicable method for optical remote sensing of ecosystem
light use efficiency, Remote Sens. Environ., 230, 111190, 2019. a
Huete, A., Liu, H., Batchily, K., and Van Leeuwen, W.: A comparison of
vegetation indices over a global set of TM images for EOS-MODIS, Remote
Sens. Environ., 59, 440–451, 1997. a
Hughes, N. M.: Winter leaf reddening in “evergreen” species, New
Phytol., 190, 573–581, 2011. a
Hyvärinen, A. and Oja, E.: Independent component analysis: algorithms
and applications, Neural Networks, 13, 411–430,
https://doi.org/10.1016/S0893-6080(00)00026-5,
2000. a
Jacquemoud, S. and Baret, F.: PROSPECT: A model of leaf optical properties
spectra, Remote Sens. Environ., 34, 75–91, 1990. a
Jacquemoud, S., Baret, F., Andrieu, B., Danson, F., and Jaggard, K.:
Extraction of vegetation biophysical parameters by inversion of the PROSPECT + SAIL models on sugar beet canopy reflectance data. Application to TM and
AVIRIS sensors, Remote Sens. Environ., 52, 163–172,
https://doi.org/10.1016/0034-4257(95)00018-V,
1995. a
Krause, G. H. and Weis, E.: CHLOROPHYLL FLUORESCENCE AND PHOTOSYNTHESIS: The
Basics, Annu. Rev. Plant. Phys., 42, 313–349, https://doi.org/10.1146/annurev.pp.42.060191.001525, 1991. a
Krinner, G., Viovy, N., de Noblet-Ducoudré, N., Ogée, J., Polcher,
J., Friedlingstein, P., Ciais, P., Sitch, S., and Prentice, I. C.: A dynamic
global vegetation model for studies of the coupled atmosphere-biosphere
system, Global Biogeochem. Cy., 19, GB1015, https://doi.org/10.1029/2003GB002199,
2005. a
Lee, D. W. and Gould, K. S.: Why leaves turn red: pigments called anthocyanins
probably protect leaves from light damage by direct shielding and by
scavenging free radicals, Am. Sci., 90, 524–531, 2002. a
Leuning, R.: A critical appraisal of a combined stomatal-photosynthesis model
for C3 plants, Plant Cell Environ., 18, 339–355, 1995. a
Magney, T. S., Bowling, D. R., Logan, B. A., Grossman, K., Stutz, J., Blanken,
P., Burns, S. P., Cheng, R., Garcia, M. A., Köhler, P., Lopez, S., Parazoo,
N., Raczka, B., Schimel, D., and Frankenberg, C.: Mechanistic evidence for
tracking the seasonality of photosynthesis with solar induced fluorescence,
P. Natl. Acad. Sci. USA, 116, 11640–11645, https://doi.org/10.1073/pnas.1900278116,
2019a. a, b, c, d, e, f, g
Magney, T., Frankenberg, C., Grossmann, K., Bowling, D., Logan, B., Burns, S., and Stutz, J.: Canopy and needle scale fluorescence data from Niwot Ridge, Colorado 2017–2018 (Version 1.1) [Data set], CaltechDATA, https://doi.org/10.22002/d1.1231, 2019b. a
Matthes, J. H., Knox, S. H., Sturtevant, C., Sonnentag, O., Verfaillie, J., and
Baldocchi, D.: Predicting landscape-scale CO2 flux at a pasture and rice
paddy with long-term hyperspectral canopy reflectance measurements,
Biogeosciences, 12, 4577–4594, https://doi.org/10.5194/bg-12-4577-2015,
2015. a
Meacham-Hensold, K., Montes, C. M., Wu, J., Guan, K., Fu, P., Ainsworth, E. A.,
Pederson, T., Moore, C. E., Brown, K. L., Raines, C., and Bernacchi, C. J.:
High-throughput field phenotyping using hyperspectral reflectance and
partial least squares regression (PLSR) reveals genetic modifications to
photosynthetic capacity, Remote Sens. Environ., 231, 111176,
https://doi.org/10.1016/J.RSE.2019.04.029,
2019. a
Middleton, E., Huemmrich, K., Landis, D., Black, T., Barr, A., and McCaughey,
J.: Photosynthetic efficiency of northern forest ecosystems using a
MODIS-derived Photochemical Reflectance Index (PRI), Remote Sens.
Environ., 187, 345–366, 2016. a
Monson, R. K., Turnipseed, A. A., Sparks, J. P., Harley, P. C., Scott-Denton,
L. E., Sparks, K., and Huxman, T. E.: Carbon sequestration in a
high-elevation, subalpine forest, Glob. Change Biol., 8, 459–478,
https://doi.org/10.1046/j.1365-2486.2002.00480.x, 2002. a, b, c
Monson, R. K., Sparks, J. P., Rosenstiel, T. N., Scott-Denton, L. E., Huxman,
T. E., Harley, P. C., Turnipseed, A. A., Burns, S. P., Backlund, B., and Hu,
J.: Climatic influences on net ecosystem CO2 exchange during the transition
from wintertime carbon source to springtime carbon sink in a high-elevation,
subalpine forest, Oecologia, 146, 130–147, 2005. a
Monteith, J. L.: Solar Radiation and Productivity in Tropical Ecosystems,
J. Appl. Ecol., 9, 747–766, 1972. a
Monteith, J. L. and Moss, C. J.: Climate and the Efficiency of Crop Production
in Britain and Discussion, Philos. T. R. Soc. B, 281, 277–294, 1977. a
Moorthy, I., Miller, J. R., and Noland, T. L.: Estimating chlorophyll
concentration in conifer needles with hyperspectral data: An assessment at
the needle and canopy level, Remote Sens. Environ., 112, 2824–2838,
2008. a
Pietrini, F., Iannelli, M., and Massacci, A.: Anthocyanin accumulation in the
illuminated surface of maize leaves enhances protection from photo-inhibitory
risks at low temperature, without further limitation to photosynthesis,
Plant Cell Environ., 25, 1251–1259, 2002. a
Porcar-Castell, A., Tyystjärvi, E., Atherton, J., Van der Tol, C., Flexas,
J., Pfündel, E. E., Moreno, J., Frankenberg, C., and Berry, J. A.:
Linking chlorophyll a fluorescence to photosynthesis for remote sensing
applications: mechanisms and challenges, J. Exp. Bot., 65,
4065–4095, 2014. a
Porcar-Castell, A., Mac Arthur, A., Rossini, M., Eklundh, L., Pacheco-Labrador, J., Anderson, K., Balzarolo, M., Martín, M. P., Jin, H., Tomelleri, E., Cerasoli, S., Sakowska, K., Hueni, A., Julitta, T., Nichol, C. J., and Vescovo, L.: EUROSPEC: at the interface between remote-sensing and ecosystem CO2 flux measurements in Europe, Biogeosciences, 12, 6103–6124, https://doi.org/10.5194/bg-12-6103-2015, 2015. a
Rautiainen, M., Lukeš, P., Homolova, L., Hovi, A., Pisek, J., and Mottus,
M.: Spectral properties of coniferous forests: A review of in situ and
laboratory measurements, Remote Sensing, 10, 207, https://doi.org/10.3390/rs10020207, 2018. a, b
Reichstein, M., Falge, E., Baldocchi, D., Papale, D., Aubinet, M., Berbigier,
P., Bernhofer, C., Buchmann, N., Gilmanov, T., Granier, A., Grunwald, T.,
Havrankova, K., Ilvesniemi, H., Janous, D., Knohl, A., Laurila, T., Lohila,
A., Loustau, D., Matteucci, G., Meyers, T., Miglietta, F., Ourcival, J.-M.,
Pumpanen, J., Rambal, S., Rotenberg, E., Sanz, M., Tenhunen, J., Seufert, G.,
Vaccari, F., Vesala, T., Yakir, D., and Valentini, R.: On the separation of
net ecosystem exchange into assimilation and ecosystem respiration: review
and improved algorithm, Glob. Change Biol., 11, 1424–1439,
https://doi.org/10.1111/j.1365-2486.2005.001002.x, 2005. a
Richardson, A. D., Braswell, B. H., Hollinger, D. Y., Jenkins, J. P., and
Ollinger, S. V.: Near-surface remote sensing of spatial and temporal
variation in canopy phenology, Ecol. Appl., 19, 1417–1428, 2009. a
Richardson, A. D., Hufkens, K., Milliman, T., Aubrecht, D. M., Chen, M., Gray,
J. M., Johnston, M. R., Keenan, T. F., Klosterman, S. T., Kosmala, M.,
Melaas, E. K., Friedl, M. A., and Frolking, S.: Tracking vegetation
phenology across diverse North American biomes using PhenoCam imagery,
Scientific Data, 5, 180028, https://doi.org/10.1038/sdata.2018.28, 2018. a
Robinson, N. P., Allred, B. W., Smith, W. K., Jones, M. O., Moreno, A.,
Erickson, T. A., Naugle, D. E., and Running, S. W.: Terrestrial primary
production for the conterminous United States derived from Landsat 30 m and
MODIS 250 m, Remote Sensing in Ecology and Conservation, 4, 264–280,
https://doi.org/10.1002/rse2.74,
2018. a
Rook, D. A.: The influence of growing temperature on photosynthesis and
respiration of Pinus radiata seedlings, New Zeal. J. Bot., 7,
43–55, https://doi.org/10.1080/0028825X.1969.10429101,
1969. a
Rouse Jr., J., Haas, R., Schell, J., and Deering, D.: Paper A 20, in: Third Earth Resources Technology Satellite-1 Symposium: The Proceedings of a Symposium Held by Goddard Space Flight Center, Washington, DC, 10–14 December 1973, Goddard Space Flight Center, Vol. 351, p. 309, Scientific and Technical Information Office, National Aeronautics and Space, 1974. a, b
Running, S. W., Nemani, R. R., Heinsch, F. A., Zhao, M., Reeves, M., and
Hashimoto, H.: A Continuous Satellite-Derived Measure of Global Terrestrial
Primary Production, BioScience, 54, 547–560,
https://doi.org/10.1641/0006-3568(2004)054[0547:acsmog]2.0.co;2,
2004. a, b
Schreiber, U., Schliwa, U., and Bilger, W.: Continuous recording of
photochemical and non-photochemical chlorophyll fluorescence quenching with a
new type of modulation fluorometer, Photosynth. Res., 10, 51–62,
1986. a
Serbin, S. P., Dillaway, D. N., Kruger, E. L., and Townsend, P. A.: Leaf
optical properties reflect variation in photosynthetic metabolism and its
sensitivity to temperature, J. Exp. Bot., 63, 489–502,
https://doi.org/10.1093/jxb/err294,
2012. a, b
Serbin, S. P., Singh, A., McNeil, B. E., Kingdon, C. C., and Townsend, P. A.:
Spectroscopic determination of leaf morphological and biochemical traits for
northern temperate and boreal tree species, Ecol. Appl., 24,
1651–1669, 2014. a
Serbin, S. P., Singh, A., Desai, A. R., Dubois, S. G., Jablonski, A. D.,
Kingdon, C. C., Kruger, E. L., and Townsend, P. A.: Remotely estimating
photosynthetic capacity, and its response to temperature, in vegetation
canopies using imaging spectroscopy, Remote Sens. Environ., 167,
78–87, 2015. a
Silva-Perez, V., Molero, G., Serbin, S. P., Condon, A. G., Reynolds, M. P.,
Furbank, R. T., and Evans, J. R.: Hyperspectral reflectance as a tool to
measure biochemical and physiological traits in wheat, J.
Exp. Bot., 69, 483–496, https://doi.org/10.1093/jxb/erx421, 2018. a, b
Sims, D. A. and Gamon, J. A.: Relationships between leaf pigment content and
spectral reflectance across a wide range of species, leaf structures and
developmental stages, Remote Sens. Environ., 81, 337–354, 2002. a
Singh, A., Serbin, S. P., McNeil, B. E., Kingdon, C. C., and Townsend, P. A.:
Imaging spectroscopy algorithms for mapping canopy foliar chemical and
morphological traits and their uncertainties, Ecol. Appl., 25,
2180–2197, 2015. a
Smith, M.-L., Ollinger, S. V., Martin, M. E., Aber, J. D., Hallett, R. A., and
Goodale, C. L.: Direct estimation of aboveground forest productivity through
hyperspectral remote sensing of canopy nitrogen, Ecol. Appl., 12,
1286–1302, 2002. a
Sonnentag, O., Hufkens, K., Teshera-Sterne, C., Young, A. M., Friedl, M.,
Braswell, B. H., Milliman, T., O'Keefe, J., and Richardson, A. D.: Digital
repeat photography for phenological research in forest ecosystems,
Agr. Forest Meteorol., 152, 159–177,
https://doi.org/10.1016/J.AGRFORMET.2011.09.009,
2012. a, b
Stylinski, C., Gamon, J., and Oechel, W.: Seasonal patterns of reflectance
indices, carotenoid pigments and photosynthesis of evergreen chaparral
species, Oecologia, 131, 366–374, https://doi.org/10.1007/s00442-002-0905-9, 2002. a
Tucker, C. J.: Red and photographic infrared linear combinations for
monitoring vegetation, Remote Sens. Environ., 8, 127–150,
https://doi.org/10.1016/0034-4257(79)90013-0,
1979. a
Ustin, S. L., Roberts, D. A., Gamon, J. A., Asner, G. P., and Green, R. O.:
Using imaging spectroscopy to study ecosystem processes and properties,
BioScience, 54, 523–534, 2004. a
Ustin, S. L., Gitelson, A. A., Jacquemoud, S., Schaepman, M., Asner, G. P.,
Gamon, J. A., and Zarco-Tejada, P.: Retrieval of foliar information about
plant pigment systems from high resolution spectroscopy, Remote Sens.
Environ., 113, S67–S77, 2009. a
van der Tol, C., Berry, J. A., Campbell, P. K. E., and Rascher, U.: Models
of fluorescence and photosynthesis for interpreting measurements of
solar-induced chlorophyll fluorescence, J. Geophys. Res.-Biogeo., 119, 2312–2327, https://doi.org/10.1002/2014JG002713, 2014. a, b
Verhoeven, A. S., Adams, W. W., and Demmig-Adams, B.: Close relationship
between the state of the xanthophyll cycle pigments and photosystem II
efficiency during recovery from winter stress, Physiol. Plantarum, 96,
567–576, https://doi.org/10.1111/j.1399-3054.1996.tb00228.x,
1996. a
Vilfan, N., Van der Tol, C., Yang, P., Wyber, R., Malenovský, Z.,
Robinson, S. A., and Verhoef, W.: Extending Fluspect to simulate xanthophyll
driven leaf reflectance dynamics, Remote Sens. Environ., 211,
345–356, https://doi.org/10.1016/J.RSE.2018.04.012,
2018. a, b
Wingate, L., Ogée, J., Cremonese, E., Filippa, G., Mizunuma, T., Migliavacca, M., Moisy, C., Wilkinson, M., Moureaux, C., Wohlfahrt, G., Hammerle, A., Hörtnagl, L., Gimeno, C., Porcar-Castell, A., Galvagno, M., Nakaji, T., Morison, J., Kolle, O., Knohl, A., Kutsch, W., Kolari, P., Nikinmaa, E., Ibrom, A., Gielen, B., Eugster, W., Balzarolo, M., Papale, D., Klumpp, K., Köstner, B., Grünwald, T., Joffre, R., Ourcival, J.-M., Hellstrom, M., Lindroth, A., George, C., Longdoz, B., Genty, B., Levula, J., Heinesch, B., Sprintsin, M., Yakir, D., Manise, T., Guyon, D., Ahrends, H., Plaza-Aguilar, A., Guan, J. H., and Grace, J.: Interpreting canopy development and physiology using a European phenology camera network at flux sites, Biogeosciences, 12, 5995–6015, https://doi.org/10.5194/bg-12-5995-2015, 2015. a
Wold, S., Ruhe, A., Wold, H., and Dunn III, W.: The collinearity problem in
linear regression. The partial least squares (PLS) approach to generalized
inverses, SIAM J. Sci. Stat. Comp., 5, 735–743,
1984. a
Wong, C. Y. and Gamon, J. A.: The photochemical reflectance index provides an
optical indicator of spring photosynthetic activation in evergreen conifers,
New Phytol., 206, 196–208, 2015a. a
Wong, C. Y. S. and Gamon, J. A.: Three causes of variation in the
photochemical reflectance index (PRI) in evergreen conifers, New
Phytol., 206, 187–195, https://doi.org/10.1111/nph.13159, 2015b. a
Wong, C. Y., D'Odorico, P., Bhathena, Y., Arain, M. A., and Ensminger, I.:
Carotenoid based vegetation indices for accurate monitoring of the phenology
of photosynthesis at the leaf-scale in deciduous and evergreen trees, Remote
Sens. Environ., 233, 111407,
https://doi.org/10.1016/j.rse.2019.111407,
2019.
a
Wong, C. Y., D'Odorico, P., Arain, M. A., and Ensminger, I.: Tracking the
phenology of photosynthesis using carotenoid-sensitive and near-infrared
reflectance vegetation indices in a temperate evergreen and mixed deciduous
forest, New Phytol., 226, 1682–1695, https://doi.org/10.1111/nph.16479, 2020. a
Woodgate, W., Suarez, L., van Gorsel, E., Cernusak, L., Dempsey, R., Devilla,
R., Held, A., Hill, M., and Norton, A.: tri-PRI: A three band reflectance
index tracking dynamic photoprotective mechanisms in a mature eucalypt
forest, Agr. Forest Meteorol., 272–273, 187–201,
https://doi.org/10.1016/J.AGRFORMET.2019.03.020,
2019. a
Wutzler, T., Lucas-Moffat, A., Migliavacca, M., Knauer, J., Sickel, K., Šigut, L., Menzer, O., and Reichstein, M.: Basic and extensible post-processing of eddy covariance flux data with REddyProc, Biogeosciences, 15, 5015–5030, https://doi.org/10.5194/bg-15-5015-2018, 2018. a
Xiao, X., Hollinger, D., Aber, J., Goltz, M., Davidson, E. A., Zhang, Q., and
Moore, B.: Satellite-based modeling of gross primary production in an
evergreen needleleaf forest, Remote Sens. Environ., 89, 519–534,
https://doi.org/10.1016/j.rse.2003.11.008, 2004. a
Yang, P. and van der Tol, C.: Linking canopy scattering of far-red sun-induced
chlorophyll fluorescence with reflectance, Remote Sens. Environ.,
209, 456–467, 2018. a
Zarter, C. R., Adams, W. W., Ebbert, V., Cuthbertson, D. J., Adamska, I., and
Demmig-Adams, B.: Winter down-regulation of intrinsic photosynthetic
capacity coupled with up-regulation of Elip-like proteins and persistent
energy dissipation in a subalpine forest, New Phytol., 172, 272–282,
https://doi.org/10.1111/j.1469-8137.2006.01815.x, 2006. a
Zhao, M., Heinsch, F. A., Nemani, R. R., and Running, S. W.: Improvements of
the MODIS terrestrial gross and net primary production global data set,
Remote Sens. Environ., 95, 164–176, https://doi.org/10.1016/J.RSE.2004.12.011,
2005. a
Zuromski, L. M., Bowling, D. R., Köhler, P., Frankenberg, C., Goulden,
M. L., Blanken, P. D., and Lin, J. C.: Solar-Induced Fluorescence Detects
Interannual Variation in Gross Primary Production of Coniferous Forests in
the Western United States, Geophys. Res. Lett., 45, 7184–7193,
https://doi.org/10.1029/2018GL077906, 2018. a
Short summary
We measured reflected sunlight from an evergreen canopy for a year to detect changes in pigments that play an important role in regulating the seasonality of photosynthesis. Results show a strong mechanistic link between spectral reflectance features and pigment content, which is validated using a biophysical model. Our results show spectrally where, why, and when spectral features change over the course of the season and show promise for estimating photosynthesis remotely.
We measured reflected sunlight from an evergreen canopy for a year to detect changes in pigments...
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