Articles | Volume 19, issue 18
https://doi.org/10.5194/bg-19-4639-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-19-4639-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Diversity and assembly processes of microbial eukaryotic communities in Fildes Peninsula Lakes (West Antarctica)
Chunmei Zhang
Key Laboratory for Polar Science, Polar Research Institute of
China, Ministry of Natural Resources, Shanghai 200136, China
State Key Laboratory of Freshwater Ecology and Biotechnology,
Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
Huirong Li
Key Laboratory for Polar Science, Polar Research Institute of
China, Ministry of Natural Resources, Shanghai 200136, China
Antarctic Great Wall Ecology National Observation and Research
Station, Polar Research Institute of China, Ministry of Natural Resources,
Shanghai 200136, China
School of Oceanography, Shanghai Jiao Tong University, Shanghai
200030, China
Yinxin Zeng
Key Laboratory for Polar Science, Polar Research Institute of
China, Ministry of Natural Resources, Shanghai 200136, China
Antarctic Great Wall Ecology National Observation and Research
Station, Polar Research Institute of China, Ministry of Natural Resources,
Shanghai 200136, China
School of Oceanography, Shanghai Jiao Tong University, Shanghai
200030, China
Haitao Ding
Key Laboratory for Polar Science, Polar Research Institute of
China, Ministry of Natural Resources, Shanghai 200136, China
Antarctic Great Wall Ecology National Observation and Research
Station, Polar Research Institute of China, Ministry of Natural Resources,
Shanghai 200136, China
School of Oceanography, Shanghai Jiao Tong University, Shanghai
200030, China
Bin Wang
Key Laboratory of Marine Ecosystem Dynamics, Second Institute of
Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
Yangjie Li
Key Laboratory of Marine Ecosystem Dynamics, Second Institute of
Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
Zhongqiang Ji
Key Laboratory of Marine Ecosystem Dynamics, Second Institute of
Oceanography, Ministry of Natural Resources, Hangzhou 310012, China
Yonghong Bi
CORRESPONDING AUTHOR
State Key Laboratory of Freshwater Ecology and Biotechnology,
Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, China
Wei Luo
CORRESPONDING AUTHOR
Key Laboratory for Polar Science, Polar Research Institute of
China, Ministry of Natural Resources, Shanghai 200136, China
Antarctic Great Wall Ecology National Observation and Research
Station, Polar Research Institute of China, Ministry of Natural Resources,
Shanghai 200136, China
School of Oceanography, Shanghai Jiao Tong University, Shanghai
200030, China
Related authors
No articles found.
Li Zhao, Cong Zeng, Ruizhe Guo, Yong Yu, Haitao Ding, Huirong Li, and Wei Luo
EGUsphere, https://doi.org/10.5194/egusphere-2026-3709, https://doi.org/10.5194/egusphere-2026-3709, 2026
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
1. The vertical distribution pattern and inter-layer heterogeneity of bacterial communities in the Chukchi Sea were uncovered. 2. Water depth, oxygen levels and silicon substances acted as key environmental drivers, with intricate stable symbiotic interactions found in middle-water bacterial assemblages. 3. Stochastic processes dominated the bacterial community assembly, combined with deterministic environmental filtering effects.
Cited articles
Allende, L.: Combined effects of nutrients and grazers on bacterioplankton
and phytoplankton abundance in an Antarctic lake with even food-chain links,
Polar Biol., 32, 493–501, https://doi.org/10.1007/s00300-008-0545-6, 2009.
Allende, L. and Izaguirre, I.: The role of physical stability on the
establishment of steady states in the phytoplankton community of two
Maritime Antarctic lakes, Hydrobiologia, 502, 211–224,
https://doi.org/10.1023/B:HYDR.0000004283.11230.4a, 2003.
Allende, L. and Mataloni, G.: Short-term analysis of the phytoplankton
structure and dynamics in two ponds with distinct trophic states from Cierva
Point (maritime Antarctica), Polar Biol., 36, 629–644,
https://doi.org/10.1007/s00300-013-1290-z, 2013.
Atteia, A., van Lis, R., Tielens, A. G. M., and Martin, W. F.: Anaerobic
energy metabolism in unicellular photosynthetic eukaryotes,
BBA-Bioenergetics, 1827, 210–223,
https://doi.org/10.1016/j.bbabio.2012.08.002, 2013.
Bahram, M., Kohout, P., Anslan, S., Harend, H., Abarenkov, K., and Tedersoo,
L.: Stochastic distribution of small soil eukaryotes resulting from high
dispersal and drift in a local environment, ISME J., 10, 885–896,
https://doi.org/10.1038/ismej.2015.164, 2016.
Barsch, D. and Caine, N.: The nature of mountain geomorphology, Mt. Res.
Dev., 4, 287–298, https://doi.org/10.2307/3673231, 1984.
Bastian, M., Heymann, S., and Jacomy, M.: Gephi: an open source software for exploring and manipulating networks, Int. Conf. Weblogs Soc. media., 3, 361–362, https://ojs.aaai.org/index.php/ICWSM/article/view/13937 (last access: 26 September 2022), 2009.
Blomqvist, P.: Early summer phytoplankton responses to experimental
manipulations of grazing and nutrients in unlimed and limed Lake Njupfatet,
central Sweden, Arch. Hydrobiol., 140, 321–346,
https://doi.org/10.1127/archiv-hydrobiol/137/1996/425, 1997.
Bouchez, T., Blieux, A. L., Dequiedt, S., Domaizon, I., Dufresne, A.,
Ferreira, S., Godon, J. J., Hellal, J., Joulian, C., Quaiser, A.,
Martin-Laurent, F., Mauffret, A., Monier, J. M., Peyret, P., Schmitt-Koplin,
P., Sibourg, O., D'oiron, E., Bispo, A., Deportes, I., Grand, C., Cuny, P.,
Maron, P. A., and Ranjard, L.: Molecular microbiology methods for
environmental diagnosis, Environ. Chem. Lett., 14, 423–441,
https://doi.org/10.1007/s10311-016-0581-3, 2016.
Brate, J., Logares, R., Berney, C., Ree, D. K., Klaveness, D., Jakobsen, K.
S., and Shalchian-Tabrizi, K.: Freshwater Perkinsea and marine-freshwater
colonizations revealed by pyrosequencing and phylogeny of environmental
rDNA, ISME J., 4, 1144–1153, https://doi.org/10.1038/ismej.2010.39, 2010.
Charvet, S., Vincent, W. F., and Lovejoy, C.: Chrysophytes and other
protists in High Arctic lakes: molecular gene surveys, pigment signatures
and microscopy, Polar Biol., 35, 733–748,
https://doi.org/10.1007/s00300-011-1118-7, 2012.
Chase, J. M.: Stochastic community assembly causes higher biodiversity in
more productive environments, Science, 328, 1388–1391,
https://doi.org/10.1126/science.1187820, 2010.
Chase, J. M., Biro, E. G., Ryberg, W. A., and Smith, K. G.: Predators temper
the relative importance of stochastic processes in the assembly of prey
metacommunities, Ecol. Lett., 12, 1210–1218,
https://doi.org/10.1111/j.1461-0248.2009.01362.x, 2009.
Chen, S. F., Zhou, Y. Q., Chen, Y. R., and Gu, J.: fastp: an ultra-fast
all-in-one FASTQ preprocessor, Bioinformatics, 34, 884–890,
https://doi.org/10.1093/bioinformatics/bty560, 2018.
Chen, W., Ren, K., Isabwe, A., Chen, H., Liu, M., and Yang, J.: Stochastic
processes shape microeukaryotic community assembly in a subtropical river
across wet and dry seasons, Microbiome, 7, 138,
https://doi.org/10.1186/s40168-019-0749-8, 2019.
Chen, W. D. and Wen, D. H.: Archaeal and bacterial communities assembly and
co-occurrence networks in subtropical mangrove sediments under Spartina
alterniflora invasion, Environ. Microbiol., 16, 10,
https://doi.org/10.1186/s40793-021-00377-y, 2021.
Chen, Z., Gu, T., Wang, X., Wu, X., and Sun, J.: Oxygen gradients shape the
unique structure of picoeukaryotic communities in the Bay of Bengal, Sci.
Total. Environ., 814, 152862,
https://doi.org/10.1016/j.scitotenv.2021.152862, 2022.
Comeau, A. M., Harding, T., Galand, P. E., Vincent, W. F., and Lovejoy, C.:
Vertical distribution of microbial communities in a perennially stratified
Arctic lake with saline, anoxic bottom waters, Sci. Rep.-UK, 2, 604,
https://doi.org/10.1038/srep00604, 2012.
Duffy, G. A., Coetzee, B. W. T., Latombe, G., Akerman, A. H., McGeoch, M.
A., and Chown, S. L.: Barriers to globally invasive species are weakening
across the Antarctic, Divers. Distrib., 23, 982–996,
https://doi.org/10.1111/ddi.12593, 2017.
Edgar, R. C.: UPARSE: highly accurate OTU sequences from microbial amplicon
reads, Nat. Methods., 10, 996–998, https://doi.org/10.1038/Nmeth.2604, 2013.
Evans, S., Martiny, J. B., and Allison, S. D.: Effects of dispersal and
selection on stochastic assembly in microbial communities, ISME J., 11,
176–185, https://doi.org/10.1038/ismej.2016.96, 2017.
Faust, K. and Raes, J.: Microbial interactions: from networks to models,
Nat. Rev. Microbiol., 10, 538–550, https://doi.org/10.1038/nrmicro2832,
2012.
Gad, M., Hou, L., Cao, M., Adyari, B., Zhang, L., Qin, D., Yu, C. P., Sun,
Q., and Hu, A.: Tracking microeukaryotic footprint in a peri-urban
watershed, China through machine-learning approaches, Sci. Total Environ.,
806, 150401, https://doi.org/10.1016/j.scitotenv.2021.150401, 2022.
Garcia-Rodriguez, F., Piccini, C., Carrizo, D., Sanchez-Garcia, L., Perez,
L., Crisci, C., Oaquim, A. B. J., Evangelista, H., Soutullo, A., Azcune, G.,
and Luning, S.: Centennial glacier retreat increases sedimentation and
eutrophication in Subantarctic periglacial lakes: A study case of Lake
Uruguay, Sci. Total Environ., 754, 142066,
https://doi.org/10.1016/j.scitotenv.2020.142066, 2021.
Glassman, S. I. and Martiny, J. B. H.: Broadscale ecological patterns are
robust to use of exact sequence variants versus operational taxonomic units,
mSphere, 3, e00148-00118, https://doi.org/10.1128/mSphere.00148-18, 2018.
Grob, C., Ulloa, O., Li, W. K. W., Alarcon, G., Fukasawa, M., and Watanabe,
S.: Picoplankton abundance and biomass across the eastern South Pacific
Ocean along latitude 32.5∘ S, Mar. Ecol.-Prog. Ser., 332, 53–62,
https://doi.org/10.3354/meps332053, 2007.
Hansen, H. P. and Koroleff, F.: Determination of nutrients, Methods Seawater
Anal., 23, 159–228, https://doi.org/10.1002/9783527613984.ch10, 1999.
He, Q., Wang, S., Hou, W., Feng, K., Li, F., Hai, W., Zhang, Y., Sun, Y.,
and Deng, Y.: Temperature and microbial interactions drive the deterministic
assembly processes in sediments of hot springs, Sci. Total Environ., 772,
145465, https://doi.org/10.1016/j.scitotenv.2021.145465, 2021.
Hernandez-Ruiz, M., Barber-Lluch, E., Prieto, A., Alvarez-Salgado, X. A.,
Logares, R., and Teira, E.: Seasonal succession of small planktonic
eukaryotes inhabiting surface waters of a coastal upwelling system, Environ.
Microbiol., 20, 2955–2973, https://doi.org/10.1111/1462-2920.14313, 2018.
Holdgate, M. W.: Terrestrial ecosystems in Antarctic, Philos. T. Roy. Soc.
B, 279, 5–25, https://doi.org/10.1098/rstb.1977.0068,
1977.
Horner-Devine, M. C. and Bohannan, B. J. M.: Phylogenetic clustering and
overdispersion in bacterial communities, Ecology, 87, S100–S108,
https://doi.org/10.1890/0012-9658(2006)87[100:Pcaoib]2.0.Co;2, 2006.
Izaguirre, I., Allende, L., and Marinone, M. C.: Comparative study of the
planktonic communities from lakes of contrasting trophic status at Hope Bay
(Antarctic Peninsula), J. Plankton Res., 25, 1079–1097,
https://doi.org/10.1093/plankt/25.9.1079, 2003.
Izaguirre, I., Allende, L., and Romina Schiaffino, M.: Phytoplankton in
Antarctic lakes: biodiversity and main ecological features, Hydrobiologia,
848, 177–207, https://doi.org/10.1007/s10750-020-04306-x, 2020.
Kardol, P., Souza, L., and Classen, A. T.: Resource availability mediates
the importance of priority effects in plant community assembly and ecosystem
function, Oikos, 122, 84–94,
https://doi.org/10.1111/j.1600-0706.2012.20546.x, 2013.
Karimi, B., Maron, P. A., Chemidlin-Prevost Boure, N., Bernard, N., Gilbert,
D., and Ranjard, L.: Microbial diversity and ecological networks as
indicators of environmental quality, Environ. Chem. Lett., 15, 265–281,
https://doi.org/10.1007/s10311-017-0614-6, 2017.
Katechakis, A. and Stibor, H.: The mixotroph Ochromonas tuberculata may
invade and suppress specialist phago- and phototroph plankton communities
depending on nutrient conditions, Oecologia, 148, 692–701,
https://doi.org/10.1007/s00442-006-0413-4, 2006.
Kawecka, B., Olech, M., Nowogrodzka-Zagorska, M., and Wojtun, B.: Diatom
communities in small water bodies at H. Arctowski Polish Antarctic Station
(King George Island, South Shetland Islands, Antarctica), Polar Biol., 19,
183–192, https://doi.org/10.1007/s003000050233, 1998.
Kong, J., Wang, Y., Warren, A., Huang, B., and Sun, P.: Diversity
distribution and assembly mechanisms of planktonic and benthic
microeukaryote communities in intertidal zones of southeast Fujian, China,
Front. Microbiol., 10, 2640, https://doi.org/10.3389/fmicb.2019.02640, 2019.
Leblanc, K., Queguiner, B., Diaz, F., Cornet, V., Michel-Rodriguez, M.,
Durrieu de Madron, X., Bowler, C., Malviya, S., Thyssen, M., Gregori, G.,
Rembauville, M., Grosso, O., Poulain, J., de Vargas, C., Pujo-Pay, M., and
Conan, P.: Nanoplanktonic diatoms are globally overlooked but play a role in
spring blooms and carbon export, Nat. Commun., 9, 953,
https://doi.org/10.1038/s41467-018-03376-9, 2018.
Lee, J. R., Raymond, B., Bracegirdle, T. J., Chades, I., Fuller, R. A.,
Shaw, J. D., and Terauds, A.: Climate change drives expansion of Antarctic
ice-free habitat, Nature, 547, 49–54, https://doi.org/10.1038/nature22996,
2017.
Li, Y. and Hu, C.: Biogeographical patterns and mechanisms of microbial
community assembly that underlie successional biocrusts across northern
China, NPJ Biofilms Microbiomes, 7, 15,
https://doi.org/10.1038/s41522-021-00188-6, 2021.
Li, Y., Gao, Y., Zhang, W., Wang, C., Wang, P., Niu, L., and Wu, H.:
Homogeneous selection dominates the microbial community assembly in the
sediment of the Three Gorges Reservoir, Sci. Total Environ., 690, 50–60,
https://doi.org/10.1016/j.scitotenv.2019.07.014, 2019.
Liang, Y., Ning, D., Lu, Z., Zhang, N., Hale, L., Wu, L., Clark, I. M.,
McGrath, S. P., Storkey, J., Hirsch, P. R., Sun, B., and Zhou, J.: Century
long fertilization reduces stochasticity controlling grassland microbial
community succession, Soil Biol. Biochem., 151, 108023,
https://doi.org/10.1016/j.soilbio.2020.108023, 2020.
Liu, K., Liu, Y., Hu, A., Wang, F., Chen, Y., Gu, Z., Anslan, S., and Hou,
J.: Different community assembly mechanisms underlie similar biogeography of
bacteria and microeukaryotes in Tibetan lakes, FEMS Microbiol. Ecol., 96,
fiaa071, https://doi.org/10.1093/femsec/fiaa071, 2020.
Liu, Q., Zhao, Q., Jiang, Y., Li, Y., Zhang, C., Li, X., Yu, X., Huang, L.,
Wang, M., Yang, G., Chen, H., and Tian, J.: Diversity and co-occurrence
networks of picoeukaryotes as a tool for indicating underlying environmental
heterogeneity in the Western Pacific Ocean, Mar. Environ. Res., 170, 105376,
https://doi.org/10.1016/j.marenvres.2021.105376, 2021.
Lizotte, M. P.: Phytoplankton and primary production, in: Polar Lakes and
Rivers: Limnology of Arctic and Antarctic Aquatic Ecosystems, edited by:
Vincent, W. F. and Laybourn-Parry, J., Oxford, 9, 157–178,
https://doi.org/10.1093/acprof:oso/9780199213887.003.0009, 2008.
Logares, R., Tesson, S. V. M., Canback, B., Pontarp, M., Hedlund, K., and
Rengefors, K.: Contrasting prevalence of selection and drift in the
community structuring of bacteria and microbial eukaryotes, Environ.
Microbiol., 20, 2231–2240, https://doi.org/10.1111/1462-2920.14265, 2018.
Lopez-Garcia, P., Rodriguez-Valera, F., Pedros-Alio, C., and Moreira, D.:
Unexpected diversity of small eukaryotes in deep-sea Antarctic plankton,
Nature, 409, 603–607, https://doi.org/10.1038/35054537, 2001.
Luo, W., Li, H., Gao, S., Yu, Y., Lin, L., and Zeng, Y.: Molecular diversity
of microbial eukaryotes in sea water from Fildes Peninsula, King George
Island, Antarctica, Polar Biol., 39, 605–616,
https://doi.org/10.1007/s00300-015-1815-8, 2015.
Lupatini, M., Suleiman, A. K. A., Jacques, R. J. S., Antoniolli, Z. I., de
Siqueira Ferreira, A. o., Kuramae, E. E., and Roesch, L. F. W.: Network
topology reveals high connectance levels and few key microbial genera within
soils, Front. Environ. Sci., 2, 10,
https://doi.org/10.3389/fenvs.2014.00010, 2014.
Lyons, W. B., Laybourn-Parry, J., Welch, K. A., and Priscu, J. C.: Antarctic
lake systems and climate change, in: Trends in Antarctic Terrestrial and
Limnetic Ecosystems, edited by: Bergstrom, D. M., Convey, P., and Huiskes,
A. H. L., Springer, Dordrecht, 273–295,
https://doi.org/10.1007/1-4020-5277-4_13, 2007.
Ma, Z. S.: DAR (diversity-area relationship): Extending classic SAR
(species-area relationship) for biodiversity and biogeography analyses,
Ecol. Evol., 8, 10023–10038, https://doi.org/10.1002/ece3.4425, 2018.
Magoc, T. and Salzberg, S. L.: FLASH: fast length adjustment of short reads
to improve genome assemblies, Bioinformatics, 27, 2957–2963,
https://doi.org/10.1093/bioinformatics/btr507, 2011.
Margesin, R. and Miteva, V.: Diversity and ecology of psychrophilic
microorganisms, Res. Microbiol., 162, 346–361,
https://doi.org/10.1016/j.resmic.2010.12.004, 2011.
Marquardt, M., Vader, A., Stubner, E. I., Reigstad, M., and Gabrielsen, T.
M.: Strong Seasonality of Marine Microbial Eukaryotes in a High-Arctic Fjord
(Isfjorden, in West Spitsbergen, Norway), Appl. Environ. Microb., 82,
1868–1880, https://doi.org/10.1128/AEM.03208-15, 2016.
Marsh, N. B., Lacelle, D., Faucher, B., Cotroneo, S., Jasperse, L., Clark,
I. D., and Andersen, D. T.: Sources of solutes and carbon cycling in
perennially ice-covered Lake Untersee, Antarctica, Sci. Rep.-UK, 10, 12290,
https://doi.org/10.1038/s41598-020-69116-6, 2020.
Massana, R. and Logares, R.: Eukaryotic versus prokaryotic marine
picoplankton ecology, Environ. Microbiol., 15, 1254–1261,
https://doi.org/10.1111/1462-2920.12043, 2013.
Massana, R., Gobet, A., Audic, S., Bass, D., Bittner, L., Boutte, C.,
Chambouvet, A., Christen, R., Claverie, J. M., Decelle, J., Dolan, J. R.,
Dunthorn, M., Edvardsen, B., Forn, I., Forster, D., Guillou, L., Jaillon,
O., Kooistra, W. H. C. F., Logares, R., Mahe, F., Not, F., Ogata, H.,
Pawlowski, J., Pernice, M. C., Probert, I., Romac, S., Richards, T.,
Santini, S., Shalchian-Tabrizi, K., Siano, R., Simon, N., Stoeck, T.,
Vaulot, D., Zingone, A., and de Vargas, C.: Marine protist diversity in
European coastal waters and sediments as revealed by high-throughput
sequencing, Environ. Microbiol., 17, 4035–4049,
https://doi.org/10.1111/1462-2920.12955, 2015.
Mataloni, G., Tesolin, G., Sacullo, F., and Tell, G.: Factors regulating
summer phytoplankton in a highly eutrophic Antarctic lake, Hydrobiologia,
432, 65–72, https://doi.org/10.1023/A:1004045219437, 2000.
Mo, Y., Zhang, W., Yang, J., Lin, Y., Yu, Z., and Lin, S.: Biogeographic
patterns of abundant and rare bacterioplankton in three subtropical bays
resulting from selective and neutral processes, ISME J., 12, 2198–2210,
https://doi.org/10.1038/s41396-018-0153-6, 2018.
Morgan-Kiss, R. M., Lizotte, M. P., Kong, W., and Priscu, J. C.:
Photoadaptation to the polar night by phytoplankton in a permanently
ice-covered Antarctic lake, Limnol. Oceanogr., 61, 3–13,
https://doi.org/10.1002/lno.10107, 2016.
Nicholls, K. H.: Chrysophyte blooms in the plankton and neuston of marine
and freshwater systems, in: Chrysophyte Algae: Ecology, Phylogeny and
Development, edited by: Sandgren, C., Smol, J., and Kristiansen, J., Cambridge University Press,
Cambridge, 181–213,
https://doi.org/10.1017/CBO9780511752292.010, 1995.
Ofiteru, I. D., Lunn, M., Curtis, T. P., Wells, G. F., Criddle, C. S.,
Francis, C. A., and Sloan, W. T.: Combined niche and neutral effects in a
microbial wastewater treatment community, P. Natl. Acad. Sci. USA,
107, 15345–15350, https://doi.org/10.1073/pnas.1000604107, 2010.
Orrock, J. L. and Watling, J. I.: Local community size mediates ecological
drift and competition in metacommunities, P. Roy. Soc. B-Biol. Sci., 277,
2185–2191, https://doi.org/10.1098/rspb.2009.2344, 2010.
Pearce, D. A. and Galand, P. E.: Microbial biodiversity and biogeography,
in: Polar lakes and rivers: Limnology of Arctic and Antarctic Aquatic
Ecosystems, edited by: Vincent, W. F. and Laybourn-Parry, J., Oxford
University Press, Oxford, 213–230,
https://doi.org/10.1093/acprof:oso/9780199213887.003.0012, 2008.
Pertierra, L. R., Aragón, P., Shaw, J. D., Bergstrom, D. M., Terauds,
A., and Olalla-Tárraga, M. Á.: Global therma niche models of two
European grasses show high invasion risks in Antarctica, Glob. Change Biol,
23, 2863–2873, https://doi.org/10.1111/gcb.13596, 2017.
Pick, F. R. and Lean, D.: Diurnal movements of metalimnetic phytoplankton,
J. Phycol., 20, 430–436, https://doi.org/10.1111/j.0022-3646.1984.00430.x,
1984.
Powell, J. R., Karunaratne, S., Campbell, C. D., Yao, H., Robinson, L., and
Singh, B. K.: Deterministic processes vary during community assembly for
ecologically dissimilar taxa, Nat. Commun., 6, 8444,
https://doi.org/10.1038/ncomms9444, 2015.
Priscu, J. C.: The biogeochemistry of nitrous oxide in permanently
ice-covered lakes of the McMurdo Dry Valleys, Antarctica, Glob. Change
Biol., 3, 301–315, https://doi.org/10.1046/j.1365-2486.1997.00147.x, 2010.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P.,
Peplies, J., and Glöckner, F.: The SILVA ribosomal RNA gene database
project: improved data processing and web-based tools, Nucleic Acids Res.,
41, 590–596, https://doi.org/10.1093/nar/gks1219, 2013.
Quiroga, M. V., Unrein, F., González Garraza, G., Küppers, G.,
Lombardo, R., Marinone, M. C., Menu Marque, S., Vinocur, A., and Mataloni,
G.: The plankton communities from peat bog pools: structure, temporal
variation and environmental factors, J. Plankton Res., 35, 1234–1253,
https://doi.org/10.1093/plankt/fbt082, 2013.
Reboul, G., Moreira, D., Annenkova, N. V., Bertolino, P., Vershinin, K. E.,
and Lopez-Garcia, P.: Marine signature taxa and core microbial community
stability along latitudinal and vertical gradients in sediments of the
deepest freshwater lake, ISME J., 15, 3412–3417,
https://doi.org/10.1038/s41396-021-01011-y, 2021.
Richards, T. A., Vepritskiy, A. A., Gouliamova, D. E., and Nierzwicki-Bauer,
S. A.: The molecular diversity of freshwater picoeukaryotes from an
oligotrophic lake reveals diverse, distinctive and globally dispersed
lineages, Environ. Microbiol., 7, 1413–1425,
https://doi.org/10.1111/j.1462-2920.2005.00828.x, 2005.
Roberts, D.: labdsv: Ordination and Multivariate Analysis for Ecology, CRAN [code], https://CRAN.R-project.org/package=labdsv (last access: 26 September 2022), 2013.
Roberts, E. C. and Laybourn-Parry, J.: Mixotrophic cryptophytes and their
predators in the Dry Valley lakes of Antarctica, Freshwater Biol., 41,
737–746, https://doi.org/10.1046/j.1365-2427.1999.00401.x, 1999.
Stegen, J. C., Lin, X., Konopka, A. E., and Fredrickson, J. K.: Stochastic
and deterministic assembly processes in subsurface microbial communities,
ISME J., 6, 1653–1664, https://doi.org/10.1038/ismej.2012.22, 2012.
Stegen, J. C., Lin, X., Fredrickson, J. K., Chen, X., Kennedy, D. W.,
Murray, C. J., Rockhold, M. L., and Konopka, A.: Quantifying community
assembly processes and identifying features that impose them, ISME J., 7,
2069–2079, https://doi.org/10.1038/ismej.2013.93, 2013.
Sun, D., Bi, Q., Li, K., Dai, P., Yu, Y., Zhou, W., Lv, T., Liu, X., Zhu,
J., Zhang, Q., Jin, C., Lu, L., and Lin, X.: Significance of temperature and
water availability for soil phosphorus transformation and microbial
community composition as affected by fertilizer sources, Biol. Fert.
Soils, 54, 229–241, https://doi.org/10.1007/s00374-017-1252-7, 2017.
Sun, P., Wang, Y., Huang, X., Huang, B., and Wang, L.: Water masses and
their associated temperature and cross-domain biotic factors co-shape
upwelling microbial communities, Water Res., 215, 118274,
https://doi.org/10.1016/j.watres.2022.118274, 2022.
ter Braak, C. and Smilauer, P.: CANOCO Reference Manual and
CanoDraw for Windows User's Guide: Software for Canonical
Community Ordination (version 4.5), Microcomputer Power, Ithaca, NY, USA, https://www.canoco.com, https://edepot.wur.nl/405659 (last access: 26 September 2022), 2002.
Toro, M., Camacho, A., Rochera, C., Rico, E., Banon, M., Fernandez-Valiente,
E., Marco, E., Justel, A., Avendano, M. C., Ariosa, Y., Vincent, W. F., and
Quesada, A.: Limnological characteristics of the freshwater ecosystems of
Byers Peninsula, Livingston Island, in maritime Antarctica, Polar Biol., 30,
635–649, https://doi.org/10.1007/s00300-006-0223-5, 2007.
Unrein, F., Izaguirre, I., Massana, R., Balague, V., and Gasol, J. M.:
Nanoplankton assemblages in maritime Antarctic lakes: characterisation and
molecular fingerprinting comparison, Aquat. Microb. Ecol., 40, 269–282,
https://doi.org/10.3354/ame040269, 2005.
Unrein, F., Gasol, J. M., Not, F., Forn, I., and Massana, R.: Mixotrophic
haptophytes are key bacterial grazers in oligotrophic coastal waters, ISME
J., 8, 164–176, https://doi.org/10.1038/ismej.2013.132, 2014.
Wang, F., Huang, B., Xie, Y., Cai, S., Wang, X., and Mu, J.: Diversity,
Composition, and Activities of Nano- and Pico-Eukaryotes in the Northern
South China Sea With Influences of Kuroshio Intrusion, Front. Mar. Sci., 8,
658233, https://doi.org/10.3389/fmars.2021.658233, 2021.
Wang, Q., Garrity, G. M., Tiedje, J. M., and Cole, J. R.: Naive Bayesian
classifier for rapid assignment of rRNA sequences into the new bacterial
taxonomy, Appl. Environ. Microb., 73, 5261–5267,
https://doi.org/10.1128/Aem.00062-07, 2007.
Wang, W., Ren, K., Chen, H., Gao, X., Ronn, R., and Yang, J.: Seven-year
dynamics of testate amoeba communities driven more by stochastic than
deterministic processes in two subtropical reservoirs, Water Res., 185,
116232, https://doi.org/10.1016/j.watres.2020.116232, 2020.
Wang, Y., Li, G., Shi, F., Dong, J., Gentekaki, E., Zou, S., Zhu, P., Zhang,
X., and Gong, J.: Taxonomic diversity of pico-/nanoeukaryotes is related to
dissolved oxygen and productivity, but functional composition is shaped by
limiting nutrients in eutrophic coastal oceans, Front Microbiol., 11, 601037,
https://doi.org/10.3389/fmicb.2020.601037, 2020.
Webb, C. O., Ackerly, D. D., McPeek, M. A., and Donoghue, M. J.: Phylogenies
and Community Ecology, Annu. Rev. Ecol. Syst., 33, 475–505,
https://doi.org/10.1146/annurev.ecolsys.33.010802.150448, 2002.
Wilkins, D., Yau, S., Williams, T. J., Allen, M. A., Brown, M. V., DeMaere,
M. Z., Lauro, F. M., and Cavicchioli, R.: Key microbial drivers in Antarctic
aquatic environments, FEMS Microbiol. Rev., 37, 303–335,
https://doi.org/10.1111/1574-6976.12007, 2013.
Wu, L. W., Ning, D. L., Zhang, B., Li, Y., Zhang, P., Shan, X. Y., Zhang, Q.
T., Brown, M. R., Li, Z. X., Van Nostrand, J. D., Ling, F. Q., Xiao, N. J.,
Zhang, Y., Vierheilig, J., Wells, G. F., Yang, Y. F., Deng, Y., Tu, Q. C.,
Wang, A. J., Zhang, T., He, Z. L., Keller, J., Nielsen, P. H., Alvarez, P.
J. J., Criddle, C. S., Wagner, M., Tiedje, J. M., He, Q., Curtis, T. P.,
Stahl, D. A., Alvarez-Cohen, L., Rittmann, B. E., Wen, X. H., and Zhou, J.
Z.: Global diversity and biogeography of bacterial communities in wastewater
treatment plants, Nat. Microbiol., 4, 2579–2579,
https://doi.org/10.1038/s41564-019-0617-0, 2019.
Xu, D., Kong, H., Yang, E. J., Wang, Y., Li, X., Sun, P., Jiao, N., Lee, Y.,
Jung, J., and Cho, K. H.: Spatial dynamics of active microeukaryotes along a
latitudinal gradient: Diversity, assembly process, and co-occurrence
relationships, Environ. Res., 212, 113234,
https://doi.org/10.1016/j.envres.2022.113234, 2022.
Yubuki, N., Nakayama, T., and Inouye, I.: A unique life cycle and
perennation in a colorless chrysophyte Spumella sp., J. Phycol., 44,
164–172, https://doi.org/10.1111/j.1529-8817.2007.00441.x, 2008.
Zeng, J., Jiao, C., Zhao, D., Xu, H., Huang, R., Cao, X., Yu, Z., and Wu, Q.
L.: Patterns and assembly processes of planktonic and sedimentary bacterial
community differ along a trophic gradient in freshwater lakes, Ecol. Indic.,
106, 105491, https://doi.org/10.1016/j.ecolind.2019.105491, 2019.
Zhang, L., Yin, W., Wang, C., Zhang, A., Zhang, H., Zhang, T., and Ju, F.:
Untangling microbiota diversity and assembly patterns in the world's largest
water diversion canal, Water Res., 204, 117617,
https://doi.org/10.1016/j.watres.2021.117617, 2021.
Zhang, W., Wan, W., Lin, H., Pan, X., Lin, L., and Yang, Y.: Nitrogen rather
than phosphorus driving the biogeographic patterns of abundant bacterial
taxa in a eutrophic plateau lake, Sci. Total Environ., 806, 150947,
https://doi.org/10.1016/j.scitotenv.2021.150947, 2022.
Zhang, W. J., Pan, Y. B., Yang, J., Chen, H. H., Holohan, B., Vaudrey, J.,
Lin, S. J., and McManus, G. B.: The diversity and biogeography of abundant
and rare intertidal marine microeukaryotes explained by environment and
dispersal limitation, Environ. Microbiol., 20, 462–476,
https://doi.org/10.1111/1462-2920.13916, 2018.
Zhao, B., Chen, M., Sun, Y., Yang, J., and Chen, F.: Genetic diversity of
picoeukaryotes in eight lakes differing in trophic status, Can. J.
Microbiol., 57, 115–126, https://doi.org/10.1139/w10-107, 2011.
Zhou, J., Deng, Y., Zhang, P., Xue, K., Liang, Y., Van Nostrand, J. D.,
Yang, Y., He, Z., Wu, L., Stahl, D. A., Hazen, T. C., Tiedje, J. M., and
Arkin, A. P.: Stochasticity, succession, and environmental perturbations in
a fluidic ecosystem, P. Natl. Acad. Sci. USA, 111, 836–845,
https://doi.org/10.1073/pnas.1324044111, 2014.
Zhu, G. H., Shuji, O., Hu, C. Y., He, J. F., Jin, M., Yu, P. S., and Pan, J.
M.: Impact of global climate change on antarctic freshwater algae, China
Environ. Sci., 30, 400–404, 2010.
Zouari, A. B., Hassen, M. B., Balague, V., Sahli, E., Ben Kacem, M. Y.,
Akrout, F., Hamza, A., and Massana, R.: Picoeukaryotic diversity in the Gulf
of Gabes: variability patterns and relationships to nutrients and water
masses, Aquat. Microb. Ecol., 81, 37–53, https://doi.org/10.3354/ame01857,
2018.
Short summary
The unique microbial eukaryotic community structure and lower diversity have been demonstrated in five freshwater lakes of the Fildes Peninsula, Antarctica. Stochastic processes and biotic co-occurrence patterns were shown to be important in shaping microbial eukaryotic communities in the area. Our study provides a better understanding of the dynamic patterns and ecological assembly processes of microbial eukaryotic communities in Antarctic oligotrophic lakes (Fildes Peninsula).
The unique microbial eukaryotic community structure and lower diversity have been demonstrated...
Altmetrics
Final-revised paper
Preprint