Articles | Volume 11, issue 23
https://doi.org/10.5194/bg-11-6841-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue:
https://doi.org/10.5194/bg-11-6841-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
08 Dec 2014
Research article |
| 08 Dec 2014
Enhanced viral production and virus-mediated mortality of bacterioplankton in a natural iron-fertilized bloom event above the Kerguelen Plateau
A. Malits
CORRESPONDING AUTHOR
CNRS, UMR7093, LOV, Observatoire océanographique, 06230, Villefranche/mer, France
Sorbonne Universités, UPMC Univ Paris 06, UMR7093, LOV, Observatoire océanographique, 06230, Villefranche/mer, France
U. Christaki
INSU-CNRS, UMR8187 LOG, Laboratoire d'Océanologie et des Géosciences, Université du Littoral, ULCO, 32 avenue Foch, 62930 Wimereux, France
I. Obernosterer
Sorbonne Universités, UPMC Univ Paris 06, UMR7621, LOMIC, Observatoire océanographique, 66650 Banyuls/mer, France
CNRS, UMR7621, LOMIC, Observatoire océanographique, 66650 Banyuls/mer, France
M. G. Weinbauer
CNRS, UMR7093, LOV, Observatoire océanographique, 06230, Villefranche/mer, France
Sorbonne Universités, UPMC Univ Paris 06, UMR7093, LOV, Observatoire océanographique, 06230, Villefranche/mer, France
Related authors
No articles found.
Flavienne Bruyant, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Lise Artigue, Lucas Barbedo de Freitas, Guislain Bécu, Simon Bélanger, Pascaline Bourgain, Annick Bricaud, Etienne Brouard, Camille Brunet, Tonya Burgers, Danielle Caleb, Katrine Chalut, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Marine Cusa, Fanny Cusset, Laeticia Dadaglio, Marty Davelaar, Gabrièle Deslongchamps, Céline Dimier, Julie Dinasquet, Dany Dumont, Brent Else, Igor Eulaers, Joannie Ferland, Gabrielle Filteau, Marie-Hélène Forget, Jérome Fort, Louis Fortier, Martí Galí, Morgane Gallinari, Svend-Erik Garbus, Nicole Garcia, Catherine Gérikas Ribeiro, Colline Gombault, Priscilla Gourvil, Clémence Goyens, Cindy Grant, Pierre-Luc Grondin, Pascal Guillot, Sandrine Hillion, Rachel Hussherr, Fabien Joux, Hannah Joy-Warren, Gabriel Joyal, David Kieber, Augustin Lafond, José Lagunas, Patrick Lajeunesse, Catherine Lalande, Jade Larivière, Florence Le Gall, Karine Leblanc, Mathieu Leblanc, Justine Legras, Keith Lévesque, Kate-M. Lewis, Edouard Leymarie, Aude Leynaert, Thomas Linkowski, Martine Lizotte, Adriana Lopes dos Santos, Claudie Marec, Dominique Marie, Guillaume Massé, Philippe Massicotte, Atsushi Matsuoka, Lisa A. Miller, Sharif Mirshak, Nathalie Morata, Brivaela Moriceau, Philippe-Israël Morin, Simon Morisset, Anders Mosbech, Alfonso Mucci, Gabrielle Nadaï, Christian Nozais, Ingrid Obernosterer, Thimoté Paire, Christos Panagiotopoulos, Marie Parenteau, Noémie Pelletier, Marc Picheral, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Llúcia Ribot Lacosta, Jean-François Rontani, Blanche Saint-Béat, Julie Sansoulet, Noé Sardet, Catherine Schmechtig, Antoine Sciandra, Richard Sempéré, Caroline Sévigny, Jordan Toullec, Margot Tragin, Jean-Éric Tremblay, Annie-Pier Trottier, Daniel Vaulot, Anda Vladoiu, Lei Xue, Gustavo Yunda-Guarin, and Marcel Babin
Earth Syst. Sci. Data, 14, 4607–4642, https://doi.org/10.5194/essd-14-4607-2022, https://doi.org/10.5194/essd-14-4607-2022, 2022
Short summary
Short summary
This paper presents a dataset acquired during a research cruise held in Baffin Bay in 2016. We observed that the disappearance of sea ice in the Arctic Ocean increases both the length and spatial extent of the phytoplankton growth season. In the future, this will impact the food webs on which the local populations depend for their food supply and fisheries. This dataset will provide insight into quantifying these impacts and help the decision-making process for policymakers.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
Short summary
Short summary
Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
Frédéric Gazeau, Céline Ridame, France Van Wambeke, Samir Alliouane, Christian Stolpe, Jean-Olivier Irisson, Sophie Marro, Jean-Michel Grisoni, Guillaume De Liège, Sandra Nunige, Kahina Djaoudi, Elvira Pulido-Villena, Julie Dinasquet, Ingrid Obernosterer, Philippe Catala, and Cécile Guieu
Biogeosciences, 18, 5011–5034, https://doi.org/10.5194/bg-18-5011-2021, https://doi.org/10.5194/bg-18-5011-2021, 2021
Short summary
Short summary
This paper shows that the impacts of Saharan dust deposition in different Mediterranean basins are as strong as those observed in coastal waters but differed substantially between the three tested stations, differences attributed to variable initial metabolic states. A stronger impact of warming and acidification on mineralization suggests a decreased capacity of Mediterranean surface communities to sequester CO2 following the deposition of atmospheric particles in the coming decades.
Evelyn Freney, Karine Sellegri, Alessia Nicosia, Leah R. Williams, Matteo Rinaldi, Jonathan T. Trueblood, André S. H. Prévôt, Melilotus Thyssen, Gérald Grégori, Nils Haëntjens, Julie Dinasquet, Ingrid Obernosterer, France Van Wambeke, Anja Engel, Birthe Zäncker, Karine Desboeufs, Eija Asmi, Hilkka Timonen, and Cécile Guieu
Atmos. Chem. Phys., 21, 10625–10641, https://doi.org/10.5194/acp-21-10625-2021, https://doi.org/10.5194/acp-21-10625-2021, 2021
Short summary
Short summary
In this work, we present observations of the organic aerosol content in primary sea spray aerosols (SSAs) continuously generated along a 5-week cruise in the Mediterranean. This information is combined with seawater biogeochemical properties also measured continuously along the ship track to develop a number of parametrizations that can be used in models to determine SSA organic content in oligotrophic waters that represent 60 % of the oceans from commonly measured seawater variables.
Jonathan V. Trueblood, Alessia Nicosia, Anja Engel, Birthe Zäncker, Matteo Rinaldi, Evelyn Freney, Melilotus Thyssen, Ingrid Obernosterer, Julie Dinasquet, Franco Belosi, Antonio Tovar-Sánchez, Araceli Rodriguez-Romero, Gianni Santachiara, Cécile Guieu, and Karine Sellegri
Atmos. Chem. Phys., 21, 4659–4676, https://doi.org/10.5194/acp-21-4659-2021, https://doi.org/10.5194/acp-21-4659-2021, 2021
Short summary
Short summary
Sea spray aerosols (SSAs) can be an important source of ice-nucleating particles (INPs) that impact cloud properties over the oceans. In the Mediterranean Sea, we found that the INPs in the seawater surface microlayer increased by an order of magnitude after a rain dust event that impacted iron and bacterial abundances. The INP properties of SSA (INPSSA) increased after a 3 d delay. Outside this event, INPSSA could be parameterized as a function of the seawater biogeochemistry.
A. R. Bowie, P. van der Merwe, F. Quéroué, T. Trull, M. Fourquez, F. Planchon, G. Sarthou, F. Chever, A. T. Townsend, I. Obernosterer, J.-B. Sallée, and S. Blain
Biogeosciences, 12, 4421–4445, https://doi.org/10.5194/bg-12-4421-2015, https://doi.org/10.5194/bg-12-4421-2015, 2015
Short summary
Short summary
Iron biogeochemical budgets during the natural ocean fertilisation experiment KEOPS-2 showed that complex circulation and transport pathways were responsible for differences in the mode and strength of iron supply, with vertical supply dominant on the plateau and lateral supply dominant in the plume. The exchange of iron between dissolved, biogenic and lithogenic pools was highly dynamic, resulting in a decoupling of iron supply and carbon export and controlling the efficiency of fertilization.
I. Obernosterer, M. Fourquez, and S. Blain
Biogeosciences, 12, 1983–1992, https://doi.org/10.5194/bg-12-1983-2015, https://doi.org/10.5194/bg-12-1983-2015, 2015
M. Fourquez, I. Obernosterer, D. M. Davies, T. W. Trull, and S. Blain
Biogeosciences, 12, 1893–1906, https://doi.org/10.5194/bg-12-1893-2015, https://doi.org/10.5194/bg-12-1893-2015, 2015
Short summary
Short summary
In this manuscript, we present the results of iron uptake measured in the naturally iron-fertilized area during the Kerguelen Ocean and Plateau compared Study 2 cruise (KEOPS2). Iron uptake by bulk community and several size fractions (microplankton, pico-nanoplankton and bacteria) are presented, compared and discussed in the present paper. This work also presents first investigations on the potential competition between bacteria and phytoplankton for access to iron.
S. Blain, J. Capparos, A. Guéneuguès, I. Obernosterer, and L. Oriol
Biogeosciences, 12, 623–635, https://doi.org/10.5194/bg-12-623-2015, https://doi.org/10.5194/bg-12-623-2015, 2015
L. Tremblay, J. Caparros, K. Leblanc, and I. Obernosterer
Biogeosciences, 12, 607–621, https://doi.org/10.5194/bg-12-607-2015, https://doi.org/10.5194/bg-12-607-2015, 2015
U. Christaki, D. Lefèvre, C. Georges, J. Colombet, P. Catala, C. Courties, T. Sime-Ngando, S. Blain, and I. Obernosterer
Biogeosciences, 11, 6739–6753, https://doi.org/10.5194/bg-11-6739-2014, https://doi.org/10.5194/bg-11-6739-2014, 2014
Short summary
Short summary
The concurrent investigation of several parameters has provided insight into two key roles of heterotrophic bacteria, and the microbial food web functioning, at the onset and late phase of the spring phytoplankton bloom induced by natural iron fertilization in the Southern Ocean.
C. Georges, S. Monchy, S. Genitsaris, and U. Christaki
Biogeosciences, 11, 5847–5863, https://doi.org/10.5194/bg-11-5847-2014, https://doi.org/10.5194/bg-11-5847-2014, 2014
E. Pulido-Villena, A.-C. Baudoux, I. Obernosterer, M. Landa, J. Caparros, P. Catala, C. Georges, J. Harmand, and C. Guieu
Biogeosciences, 11, 5607–5619, https://doi.org/10.5194/bg-11-5607-2014, https://doi.org/10.5194/bg-11-5607-2014, 2014
C. Maier, F. Bils, M. G. Weinbauer, P. Watremez, M. A. Peck, and J.-P. Gattuso
Biogeosciences, 10, 5671–5680, https://doi.org/10.5194/bg-10-5671-2013, https://doi.org/10.5194/bg-10-5671-2013, 2013
R. Zhang, X. Xia, S. C. K. Lau, C. Motegi, M. G. Weinbauer, and N. Jiao
Biogeosciences, 10, 3679–3689, https://doi.org/10.5194/bg-10-3679-2013, https://doi.org/10.5194/bg-10-3679-2013, 2013
C. Motegi, T. Tanaka, J. Piontek, C. P. D. Brussaard, J.-P. Gattuso, and M. G. Weinbauer
Biogeosciences, 10, 3285–3296, https://doi.org/10.5194/bg-10-3285-2013, https://doi.org/10.5194/bg-10-3285-2013, 2013
V. Giovagnetti, C. Brunet, F. Conversano, F. Tramontano, I. Obernosterer, C. Ridame, and C. Guieu
Biogeosciences, 10, 2973–2991, https://doi.org/10.5194/bg-10-2973-2013, https://doi.org/10.5194/bg-10-2973-2013, 2013
Related subject area
Biogeochemistry: Environmental Microbiology
A multi-phase biogeochemical model for mitigating earthquake-induced liquefaction via microbially induced desaturation and calcium carbonate precipitation
Differentiation of cognate bacterial communities in thermokarst landscapes: implications for ecological consequences of permafrost degradation
Phosphorus regulates ectomycorrhizal fungi biomass production in a Norway spruce forest
Reallocation of elemental content and macromolecules in the coccolithophore Emiliania huxleyi to acclimate to climate change
Abrasion of sedimentary rocks as a source of hydrogen peroxide and nutrients to subglacial ecosystems
Nitrous oxide (N2O) synthesis by the freshwater cyanobacterium Microcystis aeruginosa
Interdisciplinary strategy to assess the impact of meteorological variables on the biochemical composition of the rain and the dynamics of a small eutrophic lake under rain forcing
Depth-related patterns in microbial community responses to complex organic matter in the western North Atlantic Ocean
Assessing the influence of ocean alkalinity enhancement on a coastal phytoplankton community
Eddy-enhanced primary production sustains heterotrophic microbial activities in the Eastern Tropical North Atlantic
Composition and niche-specific characteristics of microbial consortia colonizing Marsberg copper mine in the Rhenish Massif
Diversity and assembly processes of microbial eukaryotic communities in Fildes Peninsula Lakes (West Antarctica)
Nitrophobic ectomycorrhizal fungi are associated with enhanced hydrophobicity of soil organic matter in a Norway spruce forest
Physiological control on carbon isotope fractionation in marine phytoplankton
Implementation of mycorrhizal mechanisms into soil carbon model improves the prediction of long-term processes of plant litter decomposition
Impact of dust addition on the microbial food web under present and future conditions of pH and temperature
Fractionation of stable carbon isotopes during acetate consumption by methanogenic and sulfidogenic microbial communities in rice paddy soils and lake sediments
Hydrothermal trace metal release and microbial metabolism in the northeastern Lau Basin of the South Pacific Ocean
Sedimentation rate and organic matter dynamics shape microbiomes across a continental margin
Disturbance triggers non-linear microbe–environment feedbacks
Hydrographic fronts shape productivity, nitrogen fixation, and microbial community composition in the southern Indian Ocean and the Southern Ocean
Microbial and geo-archaeological records reveal the growth rate, origin and composition of desert rock surface communities
Metagenomic insights into the metabolism of microbial communities that mediate iron and methane cycling in Lake Kinneret iron-rich methanic sediments
Spatiotemporal patterns of N2 fixation in coastal waters derived from rate measurements and remote sensing
Biotic and abiotic transformation of amino acids in cloud water: experimental studies and atmospheric implications
Potential bioavailability of organic matter from atmospheric particles to marine heterotrophic bacteria
Microbial functional signature in the atmospheric boundary layer
New insight to niche partitioning and ecological function of ammonia oxidizing archaea in subtropical estuarine ecosystem
Impact of reactive surfaces on the abiotic reaction between nitrite and ferrous iron and associated nitrogen and oxygen isotope dynamics
Reviews and syntheses: Bacterial bioluminescence – ecology and impact in the biological carbon pump
Salinity-dependent algae uptake and subsequent carbon and nitrogen metabolisms of two intertidal foraminifera (Ammonia tepida and Haynesina germanica)
On giant shoulders: how a seamount affects the microbial community composition of seawater and sponges
Spatial variations in sedimentary N-transformation rates in the North Sea (German Bight)
Patterns of (trace) metals and microorganisms in the Rainbow hydrothermal vent plume at the Mid-Atlantic Ridge
Co-occurrence of Fe and P stress in natural populations of the marine diazotroph Trichodesmium
Senescence as the main driver of iodide release from a diverse range of marine phytoplankton
Reviews and syntheses: Biological weathering and its consequences at different spatial levels – from nanoscale to global scale
Deep-sea sponge grounds as nutrient sinks: denitrification is common in boreo-Arctic sponges
Inducing the attachment of cable bacteria on oxidizing electrodes
Bacterial degradation activity in the eastern tropical South Pacific oxygen minimum zone
Macromolecular fungal ice nuclei in Fusarium: effects of physical and chemical processing
Effects of sea animal colonization on the coupling between dynamics and activity of soil ammonia-oxidizing bacteria and archaea in maritime Antarctica
Comprehensive characterization of an aspen (Populus tremuloides) leaf litter sample that maintained ice nucleation activity for 48 years
The origin and role of biological rock crusts in rocky desert weathering
Pyrite oxidization accelerates bacterial carbon sequestration in copper mine tailings
Biogeochemical evidence of anaerobic methane oxidation on active submarine mud volcanoes on the continental slope of the Canadian Beaufort Sea
Filtration artefacts in bacterial community composition can affect the outcome of dissolved organic matter biolability assays
Predominance of methanogens over methanotrophs in rewetted fens characterized by high methane emissions
Trichodesmium physiological ecology and phosphate reduction in the western tropical South Pacific
Potential for phenol biodegradation in cloud waters
Caitlyn A. Hall, Andre van Turnhout, Edward Kavazanjian Jr., Leon A. van Paassen, and Bruce Rittmann
Biogeosciences, 20, 2903–2917, https://doi.org/10.5194/bg-20-2903-2023, https://doi.org/10.5194/bg-20-2903-2023, 2023
Short summary
Short summary
Earthquake-induced soil liquefaction poses a significant global threat. Microbially induced desaturation and precipitation (MIDP) via denitrification is a potentially sustainable, non-disruptive bacteria-driven ground improvement technique under existing structures. We developed a next-generation biogeochemical model to understand and predict the behavior of MIDP in the natural environment to design field-based hazard mitigation treatments.
Ze Ren, Shudan Ye, Hongxuan Li, Xilei Huang, and Luyao Chen
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-85, https://doi.org/10.5194/bg-2023-85, 2023
Revised manuscript accepted for BG
Short summary
Short summary
Permafrost thaw initiates thermokarst landscape formation, resulting in distinct new habitats, including degraded permafrost soil, thermokarst lake sediments, and lake water. These distinct habitats harbored differentiated bacterial communities that originated from the same source, differing in diversity, assembly mechanisms, and environmental influences. The results implied ecological consequences of permafrost degradation in the face of further climate change.
Juan Pablo Almeida, Lorenzo Menichetti, Alf Ekblad, Nicholas P. Rosenstock, and Håkan Wallander
Biogeosciences, 20, 1443–1458, https://doi.org/10.5194/bg-20-1443-2023, https://doi.org/10.5194/bg-20-1443-2023, 2023
Short summary
Short summary
In forests, trees allocate a significant amount of carbon belowground to support mycorrhizal symbiosis. In northern forests nitrogen normally regulates this allocation and consequently mycorrhizal fungi growth. In this study we demonstrate that in a conifer forest from Sweden, fungal growth is regulated by phosphorus instead of nitrogen. This is probably due to an increase in nitrogen deposition to soils caused by decades of human pollution that has altered the ecosystem nutrient regime.
Yong Zhang, Yong Zhang, Shuai Ma, Hanbing Chen, Jiabing Li, Zhengke Li, Kui Xu, Ruiping Huang, Hong Zhang, Yonghe Han, and Jun Sun
Biogeosciences, 20, 1299–1312, https://doi.org/10.5194/bg-20-1299-2023, https://doi.org/10.5194/bg-20-1299-2023, 2023
Short summary
Short summary
We found that increasing light intensity compensates for the negative effects of low phosphorus (P) availability on cellular protein and nitrogen contents. Reduced P availability, increasing light intensity, and ocean acidification act synergistically to increase cellular contents of carbohydrate and POC and the allocation of POC to carbohydrate. These regulation mechanisms in Emiliania huxleyi could provide vital information for evaluating carbon cycle in marine ecosystems under global change.
Beatriz Gill-Olivas, Jon Telling, Mark Skidmore, and Martyn Tranter
Biogeosciences, 20, 929–943, https://doi.org/10.5194/bg-20-929-2023, https://doi.org/10.5194/bg-20-929-2023, 2023
Short summary
Short summary
Microbial ecosystems have been found in all subglacial environments sampled to date. Yet, little is known of the sources of energy and nutrients that sustain these microbial populations. This study shows that crushing of sedimentary rocks, which contain organic carbon, carbonate and sulfide minerals, along with previously weathered silicate minerals, produces a range of compounds and nutrients which can be utilised by the diverse suite of microbes that inhabit glacier beds.
Federico Fabisik, Benoit Guieysse, Jonathan Procter, and Maxence Plouviez
Biogeosciences, 20, 687–693, https://doi.org/10.5194/bg-20-687-2023, https://doi.org/10.5194/bg-20-687-2023, 2023
Short summary
Short summary
We show, for the first time, that pure cultures of the cyanobacterium Microcystis aeruginosa can synthesize the potent greenhouse gas N2O using nitrite as substrate. Our findings have broad environmental implications because M. aeruginosa is globally found in freshwater ecosystems and is often the dominant species found in algae blooms. Further research is now needed to determine the occurrence and significance of N2O emissions from ecosystems rich with M. aeruginosa.
Fanny Noirmain, Jean-Luc Baray, Frédéric Tridon, Philippe Cacault, Hermine Billard, Guillaume Voyard, Joël Van Baelen, and Delphine Latour
Biogeosciences, 19, 5729–5749, https://doi.org/10.5194/bg-19-5729-2022, https://doi.org/10.5194/bg-19-5729-2022, 2022
Short summary
Short summary
We present a study linking rain, meteorology, and mountain lake phytoplankton dynamics on the basis of a case study at Aydat (France) in September 2020. The air mass origin mainly influences the rain chemical composition, which depends on the type of rain, convective or stratiform. Our results also highlighted a non-negligible presence of photosynthetic cells in rainwater. The impact of the atmospheric forcing on the lake could play a key role in phytoplankton dynamics in the temperate zone.
Sarah A. Brown, John Paul Balmonte, Adrienne Hoarfrost, Sherif Ghobrial, and Carol Arnosti
Biogeosciences, 19, 5617–5631, https://doi.org/10.5194/bg-19-5617-2022, https://doi.org/10.5194/bg-19-5617-2022, 2022
Short summary
Short summary
Bacteria use extracellular enzymes to cut large organic matter to sizes small enough for uptake. We compared the enzymatic response of surface, mid-water, and deep-ocean bacteria to complex natural substrates. Bacteria in surface and mid-depth waters produced a much wider range of enzymes than those in the deep ocean and may therefore consume a broader range of organic matter. The extent to which organic matter is recycled by bacteria depends in part on its residence time at different depths.
Aaron Ferderer, Zanna Chase, Fraser Kennedy, Kai G. Schulz, and Lennart T. Bach
Biogeosciences, 19, 5375–5399, https://doi.org/10.5194/bg-19-5375-2022, https://doi.org/10.5194/bg-19-5375-2022, 2022
Short summary
Short summary
Ocean alkalinity enhancement has the capacity to remove vast quantities of carbon from the atmosphere, but its effect on marine ecosystems is largely unknown. We assessed the effect of increased alkalinity on a coastal phytoplankton community when seawater was equilibrated and not equilibrated with atmospheric CO2. We found that the phytoplankton community was moderately affected by increased alkalinity and equilibration with atmospheric CO2 had little influence on this effect.
Quentin Devresse, Kevin W. Becker, Arne Bendinger, Johannes Hahn, and Anja Engel
Biogeosciences, 19, 5199–5219, https://doi.org/10.5194/bg-19-5199-2022, https://doi.org/10.5194/bg-19-5199-2022, 2022
Short summary
Short summary
Eddies are ubiquitous in the ocean and alter physical, chemical, and biological processes. However, how they affect organic carbon production and consumption is largely unknown. Here we show how an eddy triggers a cascade effect on biomass production and metabolic activities of phyto- and bacterioplankton. Our results may contribute to the improvement of biogeochemical models used to estimate carbon fluxes in the ocean.
Sania Arif, Heiko Nacke, Elias Schliekmann, Andreas Reimer, Gernot Arp, and Michael Hoppert
Biogeosciences, 19, 4883–4902, https://doi.org/10.5194/bg-19-4883-2022, https://doi.org/10.5194/bg-19-4883-2022, 2022
Short summary
Short summary
The natural enrichment of Chloroflexi (Ktedonobacteria) at the Kilianstollen Marsberg copper mine rocks being exposed to the acidic sulfate-rich leachate led to an investigation of eight metagenomically assembled genomes (MAGs) involved in copper and other transition heavy metal resistance in addition to low pH resistance and aromatic compounds degradation. The present study offers functional insights about a novel cold-adapted Ktedonobacteria MAG extremophily along with other phyla MAGs.
Chunmei Zhang, Huirong Li, Yinxin Zeng, Haitao Ding, Bin Wang, Yangjie Li, Zhongqiang Ji, Yonghong Bi, and Wei Luo
Biogeosciences, 19, 4639–4654, https://doi.org/10.5194/bg-19-4639-2022, https://doi.org/10.5194/bg-19-4639-2022, 2022
Short summary
Short summary
The unique microbial eukaryotic community structure and lower diversity have been demonstrated in five freshwater lakes of the Fildes Peninsula, Antarctica. Stochastic processes and biotic co-occurrence patterns were shown to be important in shaping microbial eukaryotic communities in the area. Our study provides a better understanding of the dynamic patterns and ecological assembly processes of microbial eukaryotic communities in Antarctic oligotrophic lakes (Fildes Peninsula).
Juan Pablo Almeida, Nicholas P. Rosenstock, Susanne K. Woche, Georg Guggenberger, and Håkan Wallander
Biogeosciences, 19, 3713–3726, https://doi.org/10.5194/bg-19-3713-2022, https://doi.org/10.5194/bg-19-3713-2022, 2022
Short summary
Short summary
Fungi living in symbiosis with tree roots can accumulate belowground, forming special tissues than can repel water. We measured the water repellency of organic material incubated belowground and correlated it with fungal growth. We found a positive association between water repellency and root symbiotic fungi. These results are important because an increase in soil water repellency can reduce the release of CO2 from soils into the atmosphere and mitigate the effects of greenhouse gasses.
Karen M. Brandenburg, Björn Rost, Dedmer B. Van de Waal, Mirja Hoins, and Appy Sluijs
Biogeosciences, 19, 3305–3315, https://doi.org/10.5194/bg-19-3305-2022, https://doi.org/10.5194/bg-19-3305-2022, 2022
Short summary
Short summary
Reconstructions of past CO2 concentrations rely on proxy estimates, with one line of proxies relying on the CO2-dependence of stable carbon isotope fractionation in marine phytoplankton. Culturing experiments provide insights into which processes may impact this. We found, however, that the methods with which these culturing experiments are performed also influence 13C fractionation. Caution should therefore be taken when extrapolating results from these experiments to proxy applications.
Weilin Huang, Peter M. van Bodegom, Toni Viskari, Jari Liski, and Nadejda A. Soudzilovskaia
Biogeosciences, 19, 1469–1490, https://doi.org/10.5194/bg-19-1469-2022, https://doi.org/10.5194/bg-19-1469-2022, 2022
Short summary
Short summary
This work focuses on one of the essential pathways of mycorrhizal impact on C cycles: the mediation of plant litter decomposition. We present a model based on litter chemical quality which precludes a conclusive examination of mycorrhizal impacts on soil C. It improves long-term decomposition predictions and advances our understanding of litter decomposition dynamics. It creates a benchmark in quantitatively examining the impacts of plant–microbe interactions on soil C dynamics.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
Short summary
Short summary
Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
Ralf Conrad, Pengfei Liu, and Peter Claus
Biogeosciences, 18, 6533–6546, https://doi.org/10.5194/bg-18-6533-2021, https://doi.org/10.5194/bg-18-6533-2021, 2021
Short summary
Short summary
Acetate is an important intermediate during the anaerobic degradation of organic matter. It is consumed by methanogenic and sulfidogenic microorganisms accompanied by stable carbon isotope fractionation. We determined isotope fractionation under different conditions in two paddy soils and two lake sediments and also determined the composition of the microbial communities. Despite a relatively wide range of experimental conditions, the range of fractionation factors was quite moderate.
Natalie R. Cohen, Abigail E. Noble, Dawn M. Moran, Matthew R. McIlvin, Tyler J. Goepfert, Nicholas J. Hawco, Christopher R. German, Tristan J. Horner, Carl H. Lamborg, John P. McCrow, Andrew E. Allen, and Mak A. Saito
Biogeosciences, 18, 5397–5422, https://doi.org/10.5194/bg-18-5397-2021, https://doi.org/10.5194/bg-18-5397-2021, 2021
Short summary
Short summary
A previous study documented an intense hydrothermal plume in the South Pacific Ocean; however, the iron release associated with this plume and the impact on microbiology were unclear. We describe metal concentrations associated with multiple hydrothermal plumes in this region and protein signatures of plume-influenced microbes. Our findings demonstrate that resources released from these systems can be transported away from their source and may alter the physiology of surrounding microbes.
Sabyasachi Bhattacharya, Tarunendu Mapder, Svetlana Fernandes, Chayan Roy, Jagannath Sarkar, Moidu Jameela Rameez, Subhrangshu Mandal, Abhijit Sar, Amit Kumar Chakraborty, Nibendu Mondal, Sumit Chatterjee, Bomba Dam, Aditya Peketi, Ranadhir Chakraborty, Aninda Mazumdar, and Wriddhiman Ghosh
Biogeosciences, 18, 5203–5222, https://doi.org/10.5194/bg-18-5203-2021, https://doi.org/10.5194/bg-18-5203-2021, 2021
Short summary
Short summary
Physicochemical determinants of microbiome architecture across continental shelves–slopes are unknown, so we explored the geomicrobiology along 3 m sediment horizons of seasonal (shallow coastal) and perennial (deep sea) hypoxic zones of the Arabian Sea. Nature, concentration, and fate of the organic matter delivered to the sea floor were found to shape the microbiome across the western Indian margin, under direct–indirect influence of sedimentation rate and water column O2 level.
Aditi Sengupta, Sarah J. Fansler, Rosalie K. Chu, Robert E. Danczak, Vanessa A. Garayburu-Caruso, Lupita Renteria, Hyun-Seob Song, Jason Toyoda, Jacqueline Hager, and James C. Stegen
Biogeosciences, 18, 4773–4789, https://doi.org/10.5194/bg-18-4773-2021, https://doi.org/10.5194/bg-18-4773-2021, 2021
Short summary
Short summary
Conceptual models link microbes with the environment but are untested. We test a recent model using riverbed sediments. We exposed sediments to disturbances, going dry and becoming wet again. As the length of dry conditions got longer, there was a sudden shift in the ecology of microbes, chemistry of organic matter, and rates of microbial metabolism. We propose a new model based on feedbacks initiated by disturbance that cascade across biological, chemical, and functional aspects of the system.
Cora Hörstmann, Eric J. Raes, Pier Luigi Buttigieg, Claire Lo Monaco, Uwe John, and Anya M. Waite
Biogeosciences, 18, 3733–3749, https://doi.org/10.5194/bg-18-3733-2021, https://doi.org/10.5194/bg-18-3733-2021, 2021
Short summary
Short summary
Microbes are the main drivers of productivity and nutrient cycling in the ocean. We present a combined approach assessing C and N uptake and microbial community diversity across ecological provinces in the Southern Ocean and southern Indian Ocean. Provinces showed distinct genetic fingerprints, but microbial activity varied gradually across regions, correlating with nutrient concentrations. Our study advances the biogeographic understanding of microbial diversity across C and N uptake regimes.
Nimrod Wieler, Tali Erickson Gini, Osnat Gillor, and Roey Angel
Biogeosciences, 18, 3331–3342, https://doi.org/10.5194/bg-18-3331-2021, https://doi.org/10.5194/bg-18-3331-2021, 2021
Short summary
Short summary
Biological rock crusts (BRCs) are common microbial-based assemblages covering rocks in drylands. BRCs play a crucial role in arid environments because of the limited activity of plants and soil. Nevertheless, BRC development rates have never been dated. Here we integrated archaeological, microbiological and geological methods to provide a first estimation of the growth rate of BRCs under natural conditions. This can serve as an affordable dating tool in archaeological sites in arid regions.
Michal Elul, Maxim Rubin-Blum, Zeev Ronen, Itay Bar-Or, Werner Eckert, and Orit Sivan
Biogeosciences, 18, 2091–2106, https://doi.org/10.5194/bg-18-2091-2021, https://doi.org/10.5194/bg-18-2091-2021, 2021
Mindaugas Zilius, Irma Vybernaite-Lubiene, Diana Vaiciute, Donata Overlingė, Evelina Grinienė, Anastasija Zaiko, Stefano Bonaglia, Iris Liskow, Maren Voss, Agneta Andersson, Sonia Brugel, Tobia Politi, and Paul A. Bukaveckas
Biogeosciences, 18, 1857–1871, https://doi.org/10.5194/bg-18-1857-2021, https://doi.org/10.5194/bg-18-1857-2021, 2021
Short summary
Short summary
In fresh and brackish waters, algal blooms are often dominated by cyanobacteria, which have the ability to utilize atmospheric nitrogen. Cyanobacteria are also unusual in that they float to the surface and are dispersed by wind-driven currents. Their patchy and dynamic distribution makes it difficult to track their abundance and quantify their effects on nutrient cycling. We used remote sensing to map the distribution of cyanobacteria in a large Baltic lagoon and quantify their contributions.
Saly Jaber, Muriel Joly, Maxence Brissy, Martin Leremboure, Amina Khaled, Barbara Ervens, and Anne-Marie Delort
Biogeosciences, 18, 1067–1080, https://doi.org/10.5194/bg-18-1067-2021, https://doi.org/10.5194/bg-18-1067-2021, 2021
Short summary
Short summary
Our study is of interest to atmospheric scientists and environmental microbiologists, as we show that clouds can be considered a medium where bacteria efficiently degrade and transform amino acids, in competition with chemical processes. As current atmospheric multiphase models are restricted to chemical degradation of organic compounds, our conclusions motivate further model development.
Kahina Djaoudi, France Van Wambeke, Aude Barani, Nagib Bhairy, Servanne Chevaillier, Karine Desboeufs, Sandra Nunige, Mohamed Labiadh, Thierry Henry des Tureaux, Dominique Lefèvre, Amel Nouara, Christos Panagiotopoulos, Marc Tedetti, and Elvira Pulido-Villena
Biogeosciences, 17, 6271–6285, https://doi.org/10.5194/bg-17-6271-2020, https://doi.org/10.5194/bg-17-6271-2020, 2020
Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Olivier Magand, Timothy M. Vogel, and Catherine Larose
Biogeosciences, 17, 6081–6095, https://doi.org/10.5194/bg-17-6081-2020, https://doi.org/10.5194/bg-17-6081-2020, 2020
Short summary
Short summary
The adverse atmospheric environmental conditions do not appear suited for microbial life. We conducted the first global comparative metagenomic analysis to find out if airborne microbial communities might be selected by their ability to resist these adverse conditions. The relatively higher concentration of fungi led to the observation of higher proportions of stress-related functions in air. Fungi might likely resist and survive atmospheric physical stress better than bacteria.
Yanhong Lu, Shunyan Cheung, Ling Chen, Shuh-Ji Kao, Xiaomin Xia, Jianping Gan, Minhan Dai, and Hongbin Liu
Biogeosciences, 17, 6017–6032, https://doi.org/10.5194/bg-17-6017-2020, https://doi.org/10.5194/bg-17-6017-2020, 2020
Short summary
Short summary
Through a comprehensive investigation, we observed differential niche partitioning among diverse ammonia-oxidizing archaea (AOA) sublineages in a typical subtropical estuary. Distinct AOA communities observed at DNA and RNA levels suggested that a strong divergence in ammonia-oxidizing activity among different AOA groups occurs. Our result highlights the importance of identifying major ammonia oxidizers at RNA level in future studies.
Anna-Neva Visser, Scott D. Wankel, Pascal A. Niklaus, James M. Byrne, Andreas A. Kappler, and Moritz F. Lehmann
Biogeosciences, 17, 4355–4374, https://doi.org/10.5194/bg-17-4355-2020, https://doi.org/10.5194/bg-17-4355-2020, 2020
Short summary
Short summary
This study focuses on the chemical reaction between Fe(II) and nitrite, which has been reported to produce high levels of the greenhouse gas N2O. We investigated the extent to which dead biomass and Fe(II) minerals might enhance this reaction. Here, nitrite reduction was highest when both additives were present but less pronounced if only Fe(II) minerals were added. Both reaction systems show distinct differences, rather low N2O levels, and indicated the abiotic production of N2.
Lisa Tanet, Séverine Martini, Laurie Casalot, and Christian Tamburini
Biogeosciences, 17, 3757–3778, https://doi.org/10.5194/bg-17-3757-2020, https://doi.org/10.5194/bg-17-3757-2020, 2020
Short summary
Short summary
Bioluminescent bacteria, the most abundant light-emitting organisms in the ocean, can be free-living, be symbiotic or colonize organic particles. This review suggests that they act as a visual target and may indirectly influence the sequestration of biogenic carbon in oceans by increasing the attraction rate for consumers. We summarize the instrumentation available to quantify this impact in future studies and propose synthetic figures integrating these ecological and biogeochemical concepts.
Michael Lintner, Bianca Biedrawa, Julia Wukovits, Wolfgang Wanek, and Petra Heinz
Biogeosciences, 17, 3723–3732, https://doi.org/10.5194/bg-17-3723-2020, https://doi.org/10.5194/bg-17-3723-2020, 2020
Short summary
Short summary
Foraminifera are unicellular marine organisms that play an important role in the marine element cycle. Changes of environmental parameters such as salinity or temperature have a significant impact on the faunal assemblages. Our experiments show that changing salinity in the German Wadden Sea immediately influences the foraminiferal community. It seems that A. tepida is better adapted to salinity fluctuations than H. germanica.
Kathrin Busch, Ulrike Hanz, Furu Mienis, Benjamin Mueller, Andre Franke, Emyr Martyn Roberts, Hans Tore Rapp, and Ute Hentschel
Biogeosciences, 17, 3471–3486, https://doi.org/10.5194/bg-17-3471-2020, https://doi.org/10.5194/bg-17-3471-2020, 2020
Short summary
Short summary
Seamounts are globally abundant submarine structures that offer great potential to study the impacts and interactions of environmental gradients at a single geographic location. In an exemplary way, we describe potential mechanisms by which a seamount can affect the structure of pelagic and benthic (sponge-)associated microbial communities. We conclude that the geology, physical oceanography, biogeochemistry, and microbiology of seamounts are even more closely linked than currently appreciated.
Alexander Bratek, Justus E. E. van
Beusekom, Andreas Neumann, Tina Sanders, Jana Friedrich, Kay-Christian Emeis, and Kirstin Dähnke
Biogeosciences, 17, 2839–2851, https://doi.org/10.5194/bg-17-2839-2020, https://doi.org/10.5194/bg-17-2839-2020, 2020
Short summary
Short summary
The following paper highlights the importance of benthic N-transformation rates in different sediment types in the southern North Sea as a source of fixed nitrogen for primary producers and also as a sink of fixed nitrogen. Sedimentary fluxes of dissolved inorganic nitrogen support ∼7 to 59 % of the average annual primary production. Semi-permeable and permeable sediments contribute ∼68 % of the total benthic N2 production rates, counteracting eutrophication in the southern North Sea.
Sabine Haalboom, David M. Price, Furu Mienis, Judith D. L. van Bleijswijk, Henko C. de Stigter, Harry J. Witte, Gert-Jan Reichart, and Gerard C. A. Duineveld
Biogeosciences, 17, 2499–2519, https://doi.org/10.5194/bg-17-2499-2020, https://doi.org/10.5194/bg-17-2499-2020, 2020
Short summary
Short summary
Mineral mining in deep-sea hydrothermal settings will lead to the formation of plumes of fine-grained, chemically reactive, suspended matter. Understanding how natural hydrothermal plumes evolve as they disperse from their source, and how they affect their surrounding environment, may help in characterising the behaviour of the diluted part of mining plumes. The natural plume provided a heterogeneous, geochemically enriched habitat conducive to the development of a distinct microbial ecology.
Noelle A. Held, Eric A. Webb, Matthew M. McIlvin, David A. Hutchins, Natalie R. Cohen, Dawn M. Moran, Korinna Kunde, Maeve C. Lohan, Claire Mahaffey, E. Malcolm S. Woodward, and Mak A. Saito
Biogeosciences, 17, 2537–2551, https://doi.org/10.5194/bg-17-2537-2020, https://doi.org/10.5194/bg-17-2537-2020, 2020
Short summary
Short summary
Trichodesmium is a globally important marine nitrogen fixer that stimulates primary production in the surface ocean. We surveyed metaproteomes of Trichodesmium populations across the North Atlantic and other oceans, and we found that they experience simultaneous phosphate and iron stress because of the biophysical limits of nutrient uptake. Importantly, nitrogenase was most abundant during co-stress, indicating the potential importance of this phenotype to global nitrogen and carbon cycling.
Helmke Hepach, Claire Hughes, Karen Hogg, Susannah Collings, and Rosie Chance
Biogeosciences, 17, 2453–2471, https://doi.org/10.5194/bg-17-2453-2020, https://doi.org/10.5194/bg-17-2453-2020, 2020
Short summary
Short summary
Tropospheric iodine takes part in numerous atmospheric chemical cycles, including tropospheric ozone destruction and aerosol formation. Due to its significance for atmospheric processes, it is crucial to constrain its sources and sinks. This paper aims at investigating and understanding features of biogenic iodate-to-iodide reduction in microalgal monocultures. We find that phytoplankton senescence may play a crucial role in the release of iodide to the marine environment.
Roger D. Finlay, Shahid Mahmood, Nicholas Rosenstock, Emile B. Bolou-Bi, Stephan J. Köhler, Zaenab Fahad, Anna Rosling, Håkan Wallander, Salim Belyazid, Kevin Bishop, and Bin Lian
Biogeosciences, 17, 1507–1533, https://doi.org/10.5194/bg-17-1507-2020, https://doi.org/10.5194/bg-17-1507-2020, 2020
Short summary
Short summary
Effects of biological activity on mineral weathering operate at scales ranging from short-term, microscopic interactions to global, evolutionary timescale processes. Microorganisms have had well-documented effects at large spatio-temporal scales, but to establish the quantitative significance of microscopic measurements for field-scale processes, higher-resolution studies of liquid chemistry at local weathering sites and improved upscaling to soil-scale dissolution rates are still required.
Christine Rooks, James Kar-Hei Fang, Pål Tore Mørkved, Rui Zhao, Hans Tore Rapp, Joana R. Xavier, and Friederike Hoffmann
Biogeosciences, 17, 1231–1245, https://doi.org/10.5194/bg-17-1231-2020, https://doi.org/10.5194/bg-17-1231-2020, 2020
Short summary
Short summary
Sponge grounds are known as nutrient sources, providing nitrate and ammonium to the ocean. We found that they also can do the opposite: in six species from Arctic and North Atlantic sponge grounds, we measured high rates of denitrification, which remove these nutrients from the sea. Rates were highest when the sponge tissue got low in oxygen, which happens when sponges stop pumping because of stress. Sponge grounds may become nutrient sinks when exposed to stress.
Cheng Li, Clare E. Reimers, and Yvan Alleau
Biogeosciences, 17, 597–607, https://doi.org/10.5194/bg-17-597-2020, https://doi.org/10.5194/bg-17-597-2020, 2020
Short summary
Short summary
Novel filamentous cable bacteria that grow in the top layer of intertidal mudflat sediment were attracted to electrodes poised at a positive electrical potential. Several diverse morphologies of Desulfobulbaceae filaments, cells, and colonies were observed on the electrode surface. These observations provide information to suggest conditions that will induce cable bacteria to perform electron donation to an electrode, informing future experiments that culture cable bacteria outside of sediment.
Marie Maßmig, Jan Lüdke, Gerd Krahmann, and Anja Engel
Biogeosciences, 17, 215–230, https://doi.org/10.5194/bg-17-215-2020, https://doi.org/10.5194/bg-17-215-2020, 2020
Short summary
Short summary
Little is known about the rates of bacterial element cycling in oxygen minimum zones (OMZs). We measured bacterial production and rates of extracellular hydrolytic enzymes at various in situ oxygen concentrations in the OMZ off Peru. Our field data show unhampered bacterial activity at low oxygen concentrations. Meanwhile bacterial degradation of organic matter substantially contributed to the formation of the OMZ.
Anna T. Kunert, Mira L. Pöhlker, Kai Tang, Carola S. Krevert, Carsten Wieder, Kai R. Speth, Linda E. Hanson, Cindy E. Morris, David G. Schmale III, Ulrich Pöschl, and Janine Fröhlich-Nowoisky
Biogeosciences, 16, 4647–4659, https://doi.org/10.5194/bg-16-4647-2019, https://doi.org/10.5194/bg-16-4647-2019, 2019
Short summary
Short summary
A screening of more than 100 strains from 65 different species revealed that the ice nucleation activity within the fungal genus Fusarium is more widespread than previously assumed. Filtration experiments suggest that the single cell-free Fusarium IN is smaller than 100 kDa (~ 6 nm) and that aggregates can be formed in solution. Exposure experiments, freeze–thaw cycles, and long-term storage tests demonstrate a high stability of Fusarium IN under atmospherically relevant conditions.
Qing Wang, Renbin Zhu, Yanling Zheng, Tao Bao, and Lijun Hou
Biogeosciences, 16, 4113–4128, https://doi.org/10.5194/bg-16-4113-2019, https://doi.org/10.5194/bg-16-4113-2019, 2019
Short summary
Short summary
We investigated abundance, potential activity, and diversity of soil ammonia-oxidizing archaea (AOA) and bacteria (AOB) in five Antarctic tundra patches, including penguin colony, seal colony, and tundra marsh. We have found (1) sea animal colonization increased AOB population size.; (2) AOB contributed to ammonia oxidation rates more than AOA in sea animal colonies; (3) community structures of AOB and AOA were closely related to soil biogeochemical processes associated with animal activities.
Yalda Vasebi, Marco E. Mechan Llontop, Regina Hanlon, David G. Schmale III, Russell Schnell, and Boris A. Vinatzer
Biogeosciences, 16, 1675–1683, https://doi.org/10.5194/bg-16-1675-2019, https://doi.org/10.5194/bg-16-1675-2019, 2019
Short summary
Short summary
Ice nucleation particles (INPs) help ice form at temperatures as high as −4 °C and contribute to the formation of precipitation. Leaf litter contains a high concentration of INPs, but the organisms that produce them are unknown. Here, we cultured two bacteria and one fungus from leaf litter that produce INPs similar to those found in leaf litter. This suggests that leaf litter may be an important habitat of these organisms and supports a role of these organisms as producers of atmospheric INPs.
Nimrod Wieler, Hanan Ginat, Osnat Gillor, and Roey Angel
Biogeosciences, 16, 1133–1145, https://doi.org/10.5194/bg-16-1133-2019, https://doi.org/10.5194/bg-16-1133-2019, 2019
Short summary
Short summary
In stony deserts, when rocks are exposed to atmospheric conditions, they undergo weathering. The cavernous (honeycomb) weathering pattern is one of the most common, but it is still unclear exactly how it is formed. We show that microorganisms, which differ from the surrounding soil and dust, form biological crusts on exposed rock surfaces. These microbes secrete polymeric substances that mitigate weathering by reducing evaporation rates and, consequently, salt transport rates through the rock.
Yang Li, Zhaojun Wu, Xingchen Dong, Zifu Xu, Qixin Zhang, Haiyan Su, Zhongjun Jia, and Qingye Sun
Biogeosciences, 16, 573–583, https://doi.org/10.5194/bg-16-573-2019, https://doi.org/10.5194/bg-16-573-2019, 2019
Short summary
Short summary
This paper contributes to the study of bacterial carbon sequestration in mine tailings. Previous studies focused on carbonate mineral precipitation, while the role of autotrophs in carbon sequestration has been neglected. Carbon sequestration in two mine tailings treated with FeS2 was analyzed using 13C isotope labeling, pyrosequencing, and DNA SIP to identify carbon fixers. This paper is the first to investigate carbon sequestration by autotrophic groups in mine tailings.
Dong-Hun Lee, Jung-Hyun Kim, Yung Mi Lee, Alina Stadnitskaia, Young Keun Jin, Helge Niemann, Young-Gyun Kim, and Kyung-Hoon Shin
Biogeosciences, 15, 7419–7433, https://doi.org/10.5194/bg-15-7419-2018, https://doi.org/10.5194/bg-15-7419-2018, 2018
Short summary
Short summary
In this study, we provide first evidence of lipid biomarker patterns and phylogenetic identities of key microbes mediating anaerobic oxidation of methane (AOM) communities in active mud volcanoes (MVs) on the continental slope of the Canadian Beaufort Sea. Our lipid and 16S rRNA results indicate that archaea of the ANME-2c and ANME-3 clades are involved in AOM in the MVs investigated.
Joshua F. Dean, Jurgen R. van Hal, A. Johannes Dolman, Rien Aerts, and James T. Weedon
Biogeosciences, 15, 7141–7154, https://doi.org/10.5194/bg-15-7141-2018, https://doi.org/10.5194/bg-15-7141-2018, 2018
Short summary
Short summary
Lakes, rivers, ponds and streams are significant contributors of the greenhouse gas carbon dioxide to the atmosphere. This is partly due to the decomposition of plant and soil organic matter transported through these aquatic systems by microbial communities. In determining how vulnerable this organic material is to decomposition during aquatic transport, we show that standardized treatments in experiments can affect the way microbial communities behave and potentially the experimental outcome.
Xi Wen, Viktoria Unger, Gerald Jurasinski, Franziska Koebsch, Fabian Horn, Gregor Rehder, Torsten Sachs, Dominik Zak, Gunnar Lischeid, Klaus-Holger Knorr, Michael E. Böttcher, Matthias Winkel, Paul L. E. Bodelier, and Susanne Liebner
Biogeosciences, 15, 6519–6536, https://doi.org/10.5194/bg-15-6519-2018, https://doi.org/10.5194/bg-15-6519-2018, 2018
Short summary
Short summary
Rewetting drained peatlands may lead to prolonged emission of the greenhouse gas methane, but the underlying factors are not well described. In this study, we found two rewetted fens with known high methane fluxes had a high ratio of microbial methane producers to methane consumers and a low abundance of methane consumers compared to pristine wetlands. We therefore suggest abundances of methane-cycling microbes as potential indicators for prolonged high methane emissions in rewetted peatlands.
Kyle R. Frischkorn, Andreas Krupke, Cécile Guieu, Justine Louis, Mónica Rouco, Andrés E. Salazar Estrada, Benjamin A. S. Van Mooy, and Sonya T. Dyhrman
Biogeosciences, 15, 5761–5778, https://doi.org/10.5194/bg-15-5761-2018, https://doi.org/10.5194/bg-15-5761-2018, 2018
Short summary
Short summary
Trichodesmium is a keystone genus of marine cyanobacteria that is estimated to supply nearly half of the ocean’s fixed nitrogen, fuelling primary productivity and the cycling of carbon and nitrogen in the ocean. In our study we characterize Trichodesmium ecology across the western tropical South Pacific using gene and genome sequencing and geochemistry. We detected genes for phosphorus reduction, providing a mechanism for the noted importance of this organism in the ocean's phosphorus cycle.
Audrey Lallement, Ludovic Besaury, Elise Tixier, Martine Sancelme, Pierre Amato, Virginie Vinatier, Isabelle Canet, Olga V. Polyakova, Viatcheslay B. Artaev, Albert T. Lebedev, Laurent Deguillaume, Gilles Mailhot, and Anne-Marie Delort
Biogeosciences, 15, 5733–5744, https://doi.org/10.5194/bg-15-5733-2018, https://doi.org/10.5194/bg-15-5733-2018, 2018
Short summary
Short summary
The main objective of this work was to evaluate the potential degradation of phenol, a highly toxic pollutant, by cloud microorganisms. Phenol concentrations measured on five cloud samples collected at the PUY station in France were from 0.15 to 0.74 µg L−1. Metatranscriptomic analysis suggested that phenol could be biodegraded directly in clouds, likely by Gammaproteobacteria. A large screening showed that 93 % of 145 bacterial strains isolated from clouds were able to degrade phenol.
Cited articles
Arrieta, J. M., Weinbauer, M. G., and Herndl, G. J.: Interspecific variability in sensitivity to uv radiation and subsequent recovery in selected isolates of marine bacteria, Appl. Environ. Microb., 66, 1468–1473, 2000.
Bergh, O., Børsheim, K. Y., Bratbak, G., and Heldal, M.: High abundance of viruses found in aquatic environments, Nature, 340, 467–468, 1989.
Biller, S. J., Schubotz, F., Roggensack, S. E., Thompson, A. W., Summons, R. E., and Chisholm, S. W.: Bacterial vesicles in marine ecosystems, Science, 343, 183–186, https://doi.org/10.1126/science.1243457, 2014.
Binder, B.: Reconsidering the relationship between virally induced bacterial mortality and frequency of infected cells, Aquat. Microb. Ecol., 18, 207–215, 1999.
Bird, D. F., Maranger, R., and Karl, D.: Palmer lter: Aquatic virus abundances near the antarctic peninsula, Antarct. J. US., 28, 234–235, 1993.
Blain, S., Queguiner, B., Armand, L., Belviso, S., Bombled, B., Bopp, L., Bowie, A., Brunet, C., Brussaard, C., Carlotti, F., Christaki, U., Corbiere, A., Durand, I., Ebersbach, F., Fuda, J. L., Garcia, N., Gerringa, L., Griffiths, B., Guigue, C., Guillerm, C., Jacquet, S., Jeandel, C., Laan, P., Lefevre, D., Lo Monaco, C., Malits, A., Mosseri, J., Obernosterer, I., Park, Y. H., Picheral, M., Pondaven, P., Remenyi, T., Sandroni, V., Sarthou, G., Savoye, N., Scouarnec, L., Souhaut, M., Thuiller, D., Timmermans, K., Trull, T., Uitz, J., van Beek, P., Veldhuis, M., Vincent, D., Viollier, E., Vong, L., and Wagener, T.: Effect of natural iron fertilization on carbon sequestration in the southern ocean, Nature, 446, 1070–1074, 2007.
Blain, S., Queguiner, B., and Trull, T.: The natural iron fertilization experiment keops (kerguelen ocean and plateau compared study): An overview, Deep-Sea Res. Pt.-II, 55, 559–565, 2008.
Bonilla-Findji, O., Malits, A., Lefevre, D., Rochelle-Newall, E., Lemee, R., Weinbauer, M. G., and Gattuso, J.-P.: Viral effects on bacterial respiration, production and growth efficiency: Consistent trends in the southern ocean and the mediterranean sea, Deep-Sea Res. Pt.-II, 55, 790–800, 2008.
Boras, J. A., Sala, M. M., Vazquez-Dominguez, E., Weinbauer, M. G., and Vaque, D.: Annual changes of bacterial mortality due to viruses and protists in an oligotrophic coastal environment (nw mediterranean), Environ. Microbiol., 11, 1181–1193, https://doi.org/10.1111/j.1462-2920.2008.01849.x, 2009.
Boras, J., Sala, M., Arrieta, J., Sà, E., Felipe, J., Agustí, S., Duarte, C., and Vaqué, D.: Effect of ice melting on bacterial carbon fluxes channelled by viruses and protists in the arctic ocean, Polar Biol., 33, 1695–1707, https://doi.org/10.1007/s00300-010-0798-8, 2010.
Bratbak, G., Heldal, M., Thingstad, T. F., Riemann, B., and Haslund, O. H.: Incorporation of viruses into the budget of microbial c-transfer, A first approach, Mar. Ecol. Prog. Ser., 83, 273–280, 1992.
Brussaard, C. P. D.: Optimization of procedures for counting viruses by flow cytometry, Appl. Environ. Microbiol., 70, 1506–1513, 2004.
Brussaard, C. P. D., Wilhelm, S. W., Thingstad, F., Weinbauer, M. G., Bratbak, G., Heldal, M., Kimmance, S. A., Middelboe, M., Nagasaki, K., Paul, J. H., Schroeder, D. C., Suttle, C. A., Vaque, D., and Wommack, K. E.: Global-scale processes with a nanoscale drive: The role of marine viruses, Isme J., 2, 575–578, https://doi.org/10.1038/ismej.2008.31, 2008a.
Brussaard, C. P. D., Timmermans, K. R., Uitz, J., and Veldhuis, M. J. W.: Virioplankton dynamics and virally induced phytoplankton lysis versus microzooplankton grazing southeast of the kerguelen (southern ocean), Deep-Sea Res. Pt.-II, 55, 752–765, 2008b.
Buesseler, K. O. and Boyd, P. W.: Climate change, Will ocean fertilization work?, Science, 300, 67–68, 2003.
Christaki, U., Obernosterer, I., Van Wambeke, F., Veldhuis, M., Garcia, N., and Catala, P.: Microbial food web structure in a naturally iron fertilized area in the southern ocean (kerguelen plateau), Deep-Sea Res. Pt.-II, 55, 706–719, 2008.
Christaki, U., Lefèvre, D., Georges, C., Colombet, J., Catala, P., Courties, C., Sime-Ngando, T., Blain, S., and Obernosterer, I.: Microbial food web dynamics during spring phytoplankton blooms in the naturally iron-fertilized Kerguelen area (Southern Ocean), Biogeosciences, 11, 6739–6753, https://doi.org/10.5194/bg-11-6739-2014, 2014.
Daughney, C. J., Chatellier, X., Chan, A., Kenward, P., Fortin, D., Suttle, C. A., and Fowle, D. A.: Adsorption and precipitation of iron from seawater on a marine bacteriophage (pwh3a-p1), Mar. Chem., 91, 101–115, 2004.
de Baar, H. J. W., Boyd, P. W., Coale, K. H., Landry, M. R., Tsuda, A., ASSMY, P., Bakker, D. C. E., Bozec, Y., Barber, R. T., Brzezinski, M. A., Buesseler, K. O., Boye, M., Croot, P. L., Gervais, F., Gorbunov, M. Y., Harrison, P. J., Hiscock, M. R., Laan, P., Lancelot, C., Law, C. S., Levasseur, M., Marchetti, A., Millero, F. J., Nishioka, J., Nojiri, Y., van Oijen, T., Riebesell, U., Rijkenberg, M. J. A., Saito, H., Takeda, S., Timmermans, K. L., Veldhuis, M. J. W., Waite, A. M., and Wong, C. S.: Synthesis of iron fertilization experiments: From the iron age in the age of enlightenment, J. Geophys. Res., 110, C09S16, https://doi.org/10.1029/2004JC002601, 2005.
Evans, C. and Brussaard, C. P. D.: Regional variation in lytic and lysogenic viral infection in the southern ocean and its contribution to biogeochemical cycling, Appl. Environ. Microbiol., 78, 6741–6748, https://doi.org/10.1128/aem.01388-12, 2012.
Evans, C., Pearce, I., and Brussaard, C. P. D.: Viral-mediated lysis of microbes and carbon release in the sub-antarctic and polar frontal zones of the australian southern ocean, Environ. Microbiol., 11, 2924–2934, 2009.
Fuhrman, J. A.: Marine viruses and their biogeochemical and ecological effects, Nature, 399, 541–548, 1999.
Fuhrman, J. A. and Noble, R. T.: Viruses and protists cause similar bacterial mortality in coastal seawater, Limnol. Oceanogr., 40, 1236–1242, 1995.
Fukuda, R., Ogawa, H., Nagata, T., and Koike, I. I.: Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments, Appl. Environ. Microb., 64, 3352–3358, 1998.
Gasol, J. M., Zweifel, U. L., Peters, F., Fuhrman, J. A., and Hagstrom, A.: Significance of size and nucleic acid content heterogeneity as measured by flow cytometry in natural planktonic bacteria, Appl. Environ. Microb., 65, 4475–4483, 1999.
Gobler, C. J., Hutchins, D. A., Fisher, N. S., Cosper, E. M., and Sanudo-Wilhelmy, S. A.: Release and bioavailability of C, N, P, Se, and Fe following viral lysis of a marine chrysophyte, Limnol. Oceanogr., 42, 1492–1504, 1997.
Guixa-Boixereu, N., Vaqué , D., Gasol, J. M., Sánchez-Cámara, J., and Pedrós-Alió, C.: Viral distribution and activity in antarctic waters, Deep-Sea Res., 49, 827–845, 2002.
Helton, R. R., Cottrell, M. T., Kirchman, D. L., and Wommack, K. E.: Evaluation of incubation-based methods for estimating virioplankton production in estuaries, Aquat. Microb. Ecol., 41, 209–219, 2005.
Higgins, J. L., Kudo, I., Nishioka, J., Tsuda, A., and Wilhelm, S. W.: The response of the virus community to the seeds ii mesoscale iron fertilization, Deep-Sea Res. Pt.-II, 56, 2788–2795, 2009.
Jiao, N., Herndl, G. J., Hansell, D. A., Benner, R., Kattner, G., Wilhelm, S. W., Kirchman, D. L., Weinbauer, M., G., Luo, T., Chen, F., and Azam, F.: Microbial production of recalcitrant dissolved organic matter: Long-term carbon storage in the global ocean, Nat. Rev. Microbiol., 8, 593–599, 2010.
Kirchman, D. L.: Leucine incorporation as a measure of biomass production by heterotrophic bacteria, in: Handbook of methods in aquatic microbial ecology, edited by: Kemp, P. F., Sherr, B. F., Sherr, E. B., and Cole, J. J., Lewis Publishers, Boca Raton, FL, 509–512, 1993.
Kirchman, D. L.: Microbial ferrous wheel, Nature, 383, 303–304, 1996.
Manganelli, M., Malfatti, F., Samo, T. J., Mitchell, B. G., Wang, H., and Azam, F.: Major role of microbes in carbon fluxes during austral winter in the southern drake passage, PLoS ONE, 4, e6941, https://doi.org/10.1371/journal.pone.0006941, 2009.
Marchant, H., Davidson, A., Wright, S., and Glazebrook, J.: The distribution and abundance of viruses in the southern ocean during spring, Antarct. Sci., 12, 414–417, 2000.
Martin, J. H.: Glacial interglacial CO2 change: The iron hypothesis, Paleoceanography, 5, 1–13, 1990.
Martin, J. H. and Fitzwater, S. E.: Iron deficiency limits phytoplankton growth in the north-east pacific subarctic, Nature, 331, 341–343, 1988.
Middelboe, M. and Lyck, P. G.: Regeneration of dissolved organic matter by viral lysis in marine microbial communities, Aquat. Microb. Ecol., 27, 187–194, 2002.
Middelboe, M., Jorgensen, N., and Kroer, N.: Effects of viruses on nutrient turnover and growth efficiency of noninfected marine bacterioplankton, Appl. Environ. Microbiol., 62, 1991–1997, 1996.
Mioni, C. E., Poorvin, L., and Wilhelm, S. W.: Virus and siderophore-mediated transfer of available fe between heterotrophic bacteria: Characterization using an fe-specific bioreporter, Aquat. Microb. Ecol., 41, 233–245, 2005.
Mosseri, J., Quéguiner, B., Armand, L., and Cornet-Barthaux, V.: Impact of iron on silicon utilization by diatoms in the southern ocean: A case study of si/n cycle decoupling in a naturally iron-enriched area, Deep-Sea Res. Pt.-II, 55, 801–819, 2008.
Murray, A. G. and Jackson, A. G.: Viral dynamics: A model of the effects of size, shape, motion and abundance if single-celled planktonic organisms and other particles, Mar. Ecol. Prog. Ser., 89, 103–116, 1992.
Obernosterer, I., Christaki, U., Lefevre, D., Catala, P., Van Wambeke, F., and Lebaron, P.: Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the southern ocean, Deep-Sea Res. Pt.-II, 55, 777–789, 2008.
Park, Y.-H., Roquet, F., Durand, I., and Fuda, J.-L.: Large-scale circulation over and around the northern kerguelen plateau, Deep-Sea Res. Pt.-II, 55, 566–581, https://doi.org/10.1016/j.dsr2.2007.12.030, 2008.
Paul, J. H.: Prophages in marine bacteria: Dangerous molecular time bombs or the key to survival in the seas?, Isme J., 2, 579–589, 2008.
Paul, J. H. and Weinbauer, M. G.: Detection of lysogeny in marine environments, in: Manual of Aquatic Virus Ecology, ASLO, edited by: Suttle, C. A., Wilhelm, S. W., and Weinbauer, M. G., 30-33, 2010.
Paul, J. H., Sullivan, M. B., Segall, A. M., and Rohwer, F.: Marine phage genomics, Comp. Biochem. Phys. B., 133, 463–476, 2002.
Payet, J. P. and Suttle, C. A.: Physical and biological correlates of virus dynamics in the southern beaufort sea and amundsen gulf, Sea ice and life in a river-influenced arctic shelf ecosystem, J. Mar. Syst., 74, 933–945, 2008.
Payet, J. P. and Suttle, C. A.: To kill or not to kill: The balance between lytic and lysogenic viral infection is driven by trophic status, Limnol. Oceanogr., 58, 465–474, 2013.
Poorvin, L., Rinta-Kanto, J. M., Hutchins, D. A., and Wilhelm, S. W.: Viral release of iron and its bioavailability to marine plankton, Limnol. Oceanogr., 49, 1734–1741, 2004.
Poorvin, L., Sander, S. G., Velasquez, I., Ibisanmi, E., LeCleir, G. R., and Wilhelm, S. W.: A comparison of fe bioavailability and binding of a catecholate siderophore with virus-mediated lysates from the marine bacterium vibrio alginolyticus pwh3a, J. Exp. Mar. Biol. Ecol., 399, 43–47, 2011.
Proctor, L. M. and Fuhrman, J. A.: Viral mortality of marine bacteria and cyanobacteria, Nature, 343, 60–62, 1990.
Rue, E. L. and Bruland, K. W.: The role of organic complexation on ambient iron chemistry in the equatorial pacific ocean and the response of a mesoscale iron addition experiment, Limnol. Oceanogr., 43, 901–910, 1997.
Sarthou, G., Vincent, D., Christaki, U., Obernosterer, I., Timmermans, K. R., and Brussaard, C. P. D.: The fate of biogenic iron during a phytoplankton bloom induced by natural fertilization: Impact of copepod grazing, Deep-Sea Res. Pt.-II, 55, 734–751, 2008.
Smetacek, V., Klaas, C., Strass, V. H., Assmy, P., Montresor, M., Cisewski, B., Savoye, N., Webb, A., d/'Ovidio, F., Arrieta, J. M., Bathmann, U., Bellerby, R., Berg, G. M., Croot, P., Gonzalez, S., Henjes, J., Herndl, G. J., Hoffmann, L. J., Leach, H., Losch, M., Mills, M. M., Neill, C., Peeken, I., Rottgers, R., Sachs, O., Sauter, E., Schmidt, M. M., Schwarz, J., Terbruggen, A., and Wolf-Gladrow, D.: Deep carbon export from a southern ocean iron-fertilized diatom bloom, Nature, 487, 313–319, 2012.
Smith, D. C. and Azam, F.: A simple, economical method for measuring bacterial protein synthesis rates in seawater using 3h-leucine, Mar. Microb. Food Webs, 6, 107–114, 1992.
Smith, D. C., Steward, G. F., and Azam, F.: Virus and bacteria abundances in the drake passage during january and august 1991, Antarct. J. US., 27, 125–127, 1992.
Steward, G. F., Smith, D. C., and Azam, F.: Abundance and production of bacteria and viruses in the bering and chukchi seas, Mar. Ecol. Prog. Ser., 131, 287–300, 1996.
Street, J. H. and Paytan, A.: Iron, phytoplankton growth, and the carbon cycle, Met. Ions. Biol. Syst., 43, 153–193, 2005.
Strzepek, R. F., Maldonado, M. T., Higgins, J. L., Hall, J., Safi, K., Wilhelm, S. W., and Boyd, P.: Spinning the "ferrous wheel": The importance of the microbial community in an iron budget during the fecycle experiment, Global Biogeochem. Cy., 19, GB4S26, https://doi.org/10.1029/2005GB002490, 2005.
Suttle, C. A.: Marine viruses-major players in the global ecosystem, Nat. Rev. Microbiol., 5, 801–812, 2007.
Suttle, C. A., Chan, A. M., and Cottrell, M. T.: Infection of phytoplankton by viruses and reduction of primary productivity, Nature, 347, 467–469, 1990.
Tortell, P. D., Maldonado, M. T., and Price, N. M.: The role of heterotrophic bacteria in iron-limited ocean ecosystems, Nature, 383, 330–332, 1996.
Uitz, J., Claustre, H., Griffiths, F. B., Ras, J., Garcia, N., and Sandroni, V.: A phytoplankton class-specific primary production model applied to the Kerguelen Islands region (Southern Ocean), Deep Sea Res. Pt.-I, 56, 541–560, 2009.
Van Heukelem, L. and Thomas, C. S.: Computer-assisted high-performance liquid chromatography method development with applications to the isolation and analysis of phytoplankton pigments, J. Chromatogr. A, 910, 31–49, 2001.
Weinbauer, M. G. and Suttle, C. A.: Potential significance of lysogeny to bacteriophage production and bacterial mortality in coastal waters of the gulf of mexico, Appl. Environ. Microbiol., 62, 4374–4380, 1996.
Weinbauer, M. G., Fuks, D., and Peduzzi, P.: Distribution of viruses and dissolved DNA along a coastal trophic gradient in the northern adriatic sea, Appl. Environ. Microbiol., 59, 4074–4082, 1993.
Weinbauer, M., Winter, C., and Höfle, M.: Reconsidering transmission electron microscopy based estimates of viral infection of bacterioplankton using conversion factors derived from natural communities, Aquat. Microb. Ecol., 27, 103–110, 2002.
Weinbauer, M. G., Brettar, I., and Höfle, M. G.: Lysogeny and virus-induced mortality of bacterioplankton in surface, deep, and anoxic marine waters, Limnol. Oceanogr., 48, 1457–1465, 2003.
Weinbauer, M. G., Arrieta, J. M., Griebler, C., and Herndl, G. J.: Enhanced viral production and infection of bacterioplankton during an iron induced phytoplankton bloom in the southern ocean, Limnol. Oceanogr., 54, 774–784, 2009.
Weinbauer, M. G., Rowe, J. M., and Wilhelm, S. W.: Determining rates of virus production in aquatic systems by the virus reduction approach, in: Manual of Aquatic Virus Ecology, ASLO, edited by: Suttle, C. A., Wilhelm, S. W., and Weinbauer, M. G., 1–8, 2010.
Weinbauer, G., Chen, F., and Wilhelm, A. W.: Virus-mediated redistribution and partitioning of carbon in the global oceans, in: Microbial carbon pump, edited by: Jiao, N., Azam, F., and Sanders, S., Science/AAAS, Washington, DC, 54–56, 2011.
Wells, L. E. and Deming, J. W.: Significance of bacterivory and viral lysis in bottom waters of franklin bay, canadian arctic, during winter, Aquat. Microb. Ecol., 43, 209–221, 2006.
Wilhelm, S. W. and Suttle, C. A.: Virus and nutrient cycles in the sea, BioScience, 49, 781–787, 1999.
Wilhelm, S. W., Weinbauer, M. G., Suttle, C. A., and Jeffrey, W. H.: The role of sunlight in the removal and repair of viruses in the sea, Limnol. Oceanogr., 43, 586–592, 1998.
Wilhelm, S., Brigden, S., and Suttle, C.: A dilution technique for the direct measurement of viral production: A comparison in stratified and tidally mixed coastal waters, Microb. Ecol., 43, 168–173, 2002.
Williamson, S. J., Houchin, L. A., McDaniel, L., and Paul, J. H.: Seasonal variation in lysogeny as depicted by prophage induction in tampa bay, florida, Appl. Environ. Microbiol., 68, 4307–4314, 2002.
Wilson, W. H. and Mann, N. H.: Lysogenic and lytic viral production in marine microbial communities, Aquat. Microb. Ecol., 13, 95–100, 1997.
Winget, D. M., Williamson, K. E., Helton, R. R., and Wommack, K. E.: Tangential flow diafiltration: An improved technique for estimation of virioplankton production, Aquat. Microb. Ecol., 41, 221–232, 2005.
Special issue
Altmetrics
Final-revised paper
Preprint