Articles | Volume 17, issue 23
https://doi.org/10.5194/bg-17-6051-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-6051-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Reviews and syntheses
| 
04 Dec 2020
Reviews and syntheses |
| 04 Dec 2020
| 04 Dec 2020
Reviews and syntheses: Present, past, and future of the oxygen minimum zone in the northern Indian Ocean
Leibniz Centre for Tropical Marine Research (ZMT), Fahrenheitstr. 6, 28359
Bremen, Germany
Greg Cowie
School of Geosciences, University of Edinburgh, James Hutton Road,
Edinburgh EH9 3FE, Scotland, UK
Birgit Gaye
Institute for Geology, Universität Hamburg, Bundesstraße 55, 20146
Hamburg, Germany
Joaquim Goes
Marine Biology, Department of Marine Biology and Paleoenvironment, Lamont–Doherty Earth Observatory, Columbia University, 61 Route 9W, Palisades,
New York 10964, USA
Helga do Rosário Gomes
Marine Biology, Department of Marine Biology and Paleoenvironment, Lamont–Doherty Earth Observatory, Columbia University, 61 Route 9W, Palisades,
New York 10964, USA
Raleigh R. Hood
Horn Point Laboratory, University of Maryland Center for Environmental
Science, P.O. Box 775, Cambridge, MD 21613, USA
Zouhair Lachkar
Center for Prototype Climate Modeling (CPCM), NYU, Abu Dhabi, UAE
Henrike Schmidt
GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Duesternbrooker Weg 20,
24105 Kiel, Germany
Joachim Segschneider
Institute of Geosciences, Christian-Albrechts-Universität zu Kiel (CAU),
Ludewig-Meyn-Straße 10, 24118 Kiel, Germany
Arvind Singh
Geosciences Division, Physical Research Laboratory (PRL) Navrangpura,
Ahmedabad 380 009, India
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Short summary
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To study the interaction of the westerlies and Indian summer monsoon (ISM) during the Holocene, we used paleoenvironmental reconstructions using a sediment core from the northeast Arabian Sea. We found a climatic transition period between 4.6 and 3 ka BP during which the ISM shifted southwards and the influence of Westerlies became prominent. Our data indicate a stronger influence of agriculture activities and enhanced soil erosion, adding to Bond event impact after this transition period.
Derara Hailegeorgis, Zouhair Lachkar, Christoph Rieper, and Nicolas Gruber
Biogeosciences, 18, 303–325, https://doi.org/10.5194/bg-18-303-2021, https://doi.org/10.5194/bg-18-303-2021, 2021
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Using a Lagrangian modeling approach, this study provides a quantitative analysis of water and nitrogen offshore transport in the Canary Current System. We investigate the timescales, reach and structure of offshore transport and demonstrate that the Canary upwelling is a key source of nutrients to the open North Atlantic Ocean. Our findings stress the need for improving the representation of the Canary system and other eastern boundary upwelling systems in global coarse-resolution models.
Henrike Schmidt, Rena Czeschel, and Martin Visbeck
Ocean Sci., 16, 1459–1474, https://doi.org/10.5194/os-16-1459-2020, https://doi.org/10.5194/os-16-1459-2020, 2020
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Our investigations give detailed insight on the seasonally changing current system at intermediate depth in the Arabian Sea that is influenced by the monsoon. The changing currents influence the oxygen transport in the interior ocean and thus allow us to draw conclusions on the maintenance and seasonal variability of the upper part of the oxygen minimum zone in the Arabian Sea.
Shan Jiang, Moritz Müller, Jie Jin, Ying Wu, Kun Zhu, Guosen Zhang, Aazani Mujahid, Tim Rixen, Mohd Fakharuddin Muhamad, Edwin Sien Aun Sia, Faddrine Holt Ajon Jang, and Jing Zhang
Biogeosciences, 16, 2821–2836, https://doi.org/10.5194/bg-16-2821-2019, https://doi.org/10.5194/bg-16-2821-2019, 2019
Short summary
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Three cruises were conducted in the Rajang River estuary, Malaysia. The results revealed that the decomposition of terrestrial organic matter and the subsequent soil leaching were the main sources of dissolved inorganic nitrogen (DIN) in the fresh river water. Porewater exchange and ammonification enhanced DIN concentrations in the estuary water, while intensities of DIN addition varied between seasons. The riverine DIN flux could reach 101.5 ton(N) / d, supporting the coastal primary producers.
Natalie C. Harms, Niko Lahajnar, Birgit Gaye, Tim Rixen, Kirstin Dähnke, Markus Ankele, Ulrich Schwarz-Schampera, and Kay-Christian Emeis
Biogeosciences, 16, 2715–2732, https://doi.org/10.5194/bg-16-2715-2019, https://doi.org/10.5194/bg-16-2715-2019, 2019
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The Indian Ocean subtropical gyre is a large oligotrophic area that is likely to adjust to continued warming by increasing stratification, reduced nutrient supply and decreasing biological production. In this study, we investigated concentrations of nutrients and stable isotopes of nitrate. We determine the lateral influence of water masses entering the gyre from the northern Indian Ocean and from the Southern Ocean and quantify the input of nitrogen by N2 fixation into the surface layer.
Malte Heinemann, Joachim Segschneider, and Birgit Schneider
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Ocean CO2 uptake played a crucial role for the global cooling during ice ages. Dust formation, e.g. by ice scraping over bedrock, potentially contributed to this CO2 uptake because (1) the iron in the dust is a fertilizer and (2) the heavy dust particles can accelerate sinking organic matter (ballasting hypothesis). This study tests the glacial dust ballasting hypothesis for the first time, using an ocean model. It turns out, however, that the ballasting effect probably played a minor role.
Henrike Schmidt, Rena Czeschel, and Martin Visbeck
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-168, https://doi.org/10.5194/bg-2019-168, 2019
Manuscript not accepted for further review
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Our investigations give a detailed insight on the changing current system at intermediate depth in the Arabian Sea and allow to draw conclusions on ventilation pathways of the oxygen minimum zone and its seasonal variability. In response to the monsoon system the boundary currents change direction and feature a regionally varying ventilation pattern.
Tim Rixen, Birgit Gaye, Kay-Christian Emeis, and Venkitasubramani Ramaswamy
Biogeosciences, 16, 485–503, https://doi.org/10.5194/bg-16-485-2019, https://doi.org/10.5194/bg-16-485-2019, 2019
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Data obtained from sediment trap experiments in the Indian Ocean indicate that lithogenic matter ballast increases organic carbon flux rates on average by 45 % and by up to 62 % at trap locations in the river-influenced regions of the Indian Ocean. Such a strong lithogenic matter ballast effect implies that land use changes and the associated enhanced transport of lithogenic matter may significantly affect the CO2 uptake of the organic carbon pump in the receiving ocean areas.
Denise Müller-Dum, Thorsten Warneke, Tim Rixen, Moritz Müller, Antje Baum, Aliki Christodoulou, Joanne Oakes, Bradley D. Eyre, and Justus Notholt
Biogeosciences, 16, 17–32, https://doi.org/10.5194/bg-16-17-2019, https://doi.org/10.5194/bg-16-17-2019, 2019
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Southeast Asian peat-draining rivers are potentially strong sources of carbon to the atmosphere due to the large amounts of organic carbon stored in those ecosystems. We present the first assessment of CO2 emissions from the Rajang River, the largest peat-draining river in Malaysia. The peatlands’ influence on the CO2 emissions from the Rajang River was smaller than expected, probably due to their proximity to the coast. Therefore, the Rajang was only a moderate source of CO2 to the atmosphere.
Joachim Segschneider, Birgit Schneider, and Vyacheslav Khon
Biogeosciences, 15, 3243–3266, https://doi.org/10.5194/bg-15-3243-2018, https://doi.org/10.5194/bg-15-3243-2018, 2018
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To gain a better understanding of climate and marine biogeochemistry variations over the last 9500 years (the Holocene), we performed non-accelerated model simulations with a global coupled climate and biogeochemistry model forced by orbital parameters and atmospheric greenhouse gases. One main outcome is an increase in the volume of the eastern equatorial Pacific oxygen minimum zone, driven by a slowdown of the large-scale circulation.
Celeste Sánchez-Noguera, Ines Stuhldreier, Jorge Cortés, Carlos Jiménez, Álvaro Morales, Christian Wild, and Tim Rixen
Biogeosciences, 15, 2349–2360, https://doi.org/10.5194/bg-15-2349-2018, https://doi.org/10.5194/bg-15-2349-2018, 2018
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The Papagayo upwelling system is a natural laboratory for studying ecosystems' response to ocean acidification (OA). We measured pH and pCO2 in situ with high temporal resolution and compared them with data available from upwelling season. Local coral reefs are exposed to acidic and undersaturated waters in upwelling and non-upwelling events. These restrictive conditions occur alongside local stressors, potentially decreasing reefs' resilience and increasing their vulnerability under future OA.
Birgit Gaye, Anna Böll, Joachim Segschneider, Nicole Burdanowitz, Kay-Christian Emeis, Venkitasubramani Ramaswamy, Niko Lahajnar, Andreas Lückge, and Tim Rixen
Biogeosciences, 15, 507–527, https://doi.org/10.5194/bg-15-507-2018, https://doi.org/10.5194/bg-15-507-2018, 2018
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The Arabian Sea has one of the most severe oxygen minima of the world's oceans between about 100 and 1200 m of water depth and is therefore a major oceanic nitrogen sink. Stable nitrogen isotopic ratios in sediments record changes in oxygen concentrations and were studied for the last 25 kyr. Oxygen concentrations dropped at the end of the last glacial and became further reduced during the Holocene, probably due to the increasing age of the low-oxygen water mass.
Zouhair Lachkar, Marina Lévy, and Shafer Smith
Biogeosciences, 15, 159–186, https://doi.org/10.5194/bg-15-159-2018, https://doi.org/10.5194/bg-15-159-2018, 2018
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This study provides a new contribution to our understanding of the coupling between the oxygen minimum zones (OMZs) and climate. It explores how idealized changes in summer and winter Indian monsoon winds affect the productivity of the Arabian Sea and the size and intensity of its OMZ. We find that intensification of Indian monsoon winds can amplify climate warming on decadal to centennial timescales.
Tim Rixen, Birgit Gaye, Kay-Christian Emeis, and Venkitasubramani Ramaswamy
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-317, https://doi.org/10.5194/bg-2017-317, 2017
Manuscript not accepted for further review
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Sediment trap experiments showed that in the river-influenced regions of the Indian Ocean lithogenic matter supplied from land controls the organic carbon export into the deep sea via its ballast effect in sinking particles. Carbonate produced by plankton is the main ballast material in the open ocean. The ballast effect increases the CO2 uptake of the organic carbon pump by enhancing the amount of nutrients used to bind CO2 and by favouring the sedimentation of organic matter.
Elisa Lovecchio, Nicolas Gruber, Matthias Münnich, and Zouhair Lachkar
Biogeosciences, 14, 3337–3369, https://doi.org/10.5194/bg-14-3337-2017, https://doi.org/10.5194/bg-14-3337-2017, 2017
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We find that a big portion of the phytoplankton, zooplankton, and detrital organic matter produced near the northern African coast is laterally transported towards the open North Atlantic. This offshore flux sustains a relevant part of the biological activity in the open sea and reaches as far as the middle of the North Atlantic. Our results, obtained with a state-of-the-art model, highlight the fundamental role of the narrow but productive coastal ocean in sustaining global marine life.
Alex R. Baker, Maria Kanakidou, Katye E. Altieri, Nikos Daskalakis, Gregory S. Okin, Stelios Myriokefalitakis, Frank Dentener, Mitsuo Uematsu, Manmohan M. Sarin, Robert A. Duce, James N. Galloway, William C. Keene, Arvind Singh, Lauren Zamora, Jean-Francois Lamarque, Shih-Chieh Hsu, Shital S. Rohekar, and Joseph M. Prospero
Atmos. Chem. Phys., 17, 8189–8210, https://doi.org/10.5194/acp-17-8189-2017, https://doi.org/10.5194/acp-17-8189-2017, 2017
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Man's activities have greatly increased the amount of nitrogen emitted into the atmosphere. Some of this nitrogen is transported to the world's oceans, where it may affect microscopic marine plants and cause ecological problems. The huge size of the oceans makes direct monitoring of nitrogen inputs impossible, so computer models must be used to assess this issue. We find that current models reproduce observed nitrogen deposition to the oceans reasonably well and recommend future improvements.
Roland Séférian, Marion Gehlen, Laurent Bopp, Laure Resplandy, James C. Orr, Olivier Marti, John P. Dunne, James R. Christian, Scott C. Doney, Tatiana Ilyina, Keith Lindsay, Paul R. Halloran, Christoph Heinze, Joachim Segschneider, Jerry Tjiputra, Olivier Aumont, and Anastasia Romanou
Geosci. Model Dev., 9, 1827–1851, https://doi.org/10.5194/gmd-9-1827-2016, https://doi.org/10.5194/gmd-9-1827-2016, 2016
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This paper explores how the large diversity in spin-up protocols used for ocean biogeochemistry in CMIP5 models contributed to inter-model differences in modeled fields. We show that a link between spin-up duration and skill-score metrics emerges from both individual IPSL-CM5A-LR's results and an ensemble of CMIP5 models. Our study suggests that differences in spin-up protocols constitute a source of inter-model uncertainty which would require more attention in future intercomparison exercises.
Denise Müller, Hermann W. Bange, Thorsten Warneke, Tim Rixen, Moritz Müller, Aazani Mujahid, and Justus Notholt
Biogeosciences, 13, 2415–2428, https://doi.org/10.5194/bg-13-2415-2016, https://doi.org/10.5194/bg-13-2415-2016, 2016
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Estuaries act as sources of the greenhouse gases nitrous oxide (N2O) and methane (CH4) to the atmosphere. We provide first measurements of N2O and CH4 in two estuaries in north-western Borneo, a region which is dominated by peatlands. We show that N2O and CH4 concentrations in these estuaries are moderate despite high organic carbon loads, that nutrient enhancement does not lead to enhanced N2O emissions, and that the wet season dominates the variability of the emissions in these systems.
Isaac D. Irby, Marjorie A. M. Friedrichs, Carl T. Friedrichs, Aaron J. Bever, Raleigh R. Hood, Lyon W. J. Lanerolle, Ming Li, Lewis Linker, Malcolm E. Scully, Kevin Sellner, Jian Shen, Jeremy Testa, Hao Wang, Ping Wang, and Meng Xia
Biogeosciences, 13, 2011–2028, https://doi.org/10.5194/bg-13-2011-2016, https://doi.org/10.5194/bg-13-2011-2016, 2016
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A comparison of eight hydrodynamic-oxygen models revealed that while models have difficulty resolving key drivers of dissolved oxygen (DO) variability, all models exhibit skill in reproducing the variability of DO itself. Further, simple oxygen models and complex biogeochemical models reproduced observed DO variability similarly well. Future advances in hypoxia simulations will depend more on the ability to reproduce the depth of the mixed layer than the degree of the vertical density gradient.
D. Müller, T. Warneke, T. Rixen, M. Müller, A. Mujahid, H. W. Bange, and J. Notholt
Biogeosciences, 13, 691–705, https://doi.org/10.5194/bg-13-691-2016, https://doi.org/10.5194/bg-13-691-2016, 2016
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We studied organic carbon and the dissolved greenhouse gases carbon dioxide (CO2) and carbon monoxide (CO) in two estuaries in Sarawak, Malaysia, whose coast is covered by carbon-rich peatlands. The estuaries received terrestrial organic carbon from peat-draining tributaries. A large fraction was converted to CO2 and a minor fraction to CO. Both gases were released to the atmosphere. This shows how these estuaries function as efficient filters between land and ocean in this important region.
A. Singh, S. E. Baer, U. Riebesell, A. C. Martiny, and M. W. Lomas
Biogeosciences, 12, 6389–6403, https://doi.org/10.5194/bg-12-6389-2015, https://doi.org/10.5194/bg-12-6389-2015, 2015
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Stoichiometry of macronutrients in the subtropical ocean is important to understand how biogeochemical cycles are coupled. We observed that elemental stoichiometry was much higher in the dissolved organic-matter pools than in the particulate organic matter pools. In addition ratios vary with depth due to changes in growth rates of specific phytoplankton groups, namely cyanobacteria. These data will improve biogeochemical models by placing observational constraints on these ratios.
D. Müller, T. Warneke, T. Rixen, M. Müller, S. Jamahari, N. Denis, A. Mujahid, and J. Notholt
Biogeosciences, 12, 5967–5979, https://doi.org/10.5194/bg-12-5967-2015, https://doi.org/10.5194/bg-12-5967-2015, 2015
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Tropical peatlands are an important source of organic carbon to rivers. However, due to the remoteness of these ecosystems, data are scarce. We present the first combined assessment of both lateral organic carbon fluxes and CO2 emissions from an undisturbed tropical peat-draining river. Compared to the organic carbon concentrations, CO2 fluxes to the atmosphere were actually relatively moderate, which we attributed to the short water residence time.
C. Le Quéré, R. Moriarty, R. M. Andrew, G. P. Peters, P. Ciais, P. Friedlingstein, S. D. Jones, S. Sitch, P. Tans, A. Arneth, T. A. Boden, L. Bopp, Y. Bozec, J. G. Canadell, L. P. Chini, F. Chevallier, C. E. Cosca, I. Harris, M. Hoppema, R. A. Houghton, J. I. House, A. K. Jain, T. Johannessen, E. Kato, R. F. Keeling, V. Kitidis, K. Klein Goldewijk, C. Koven, C. S. Landa, P. Landschützer, A. Lenton, I. D. Lima, G. Marland, J. T. Mathis, N. Metzl, Y. Nojiri, A. Olsen, T. Ono, S. Peng, W. Peters, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. E. Salisbury, U. Schuster, J. Schwinger, R. Séférian, J. Segschneider, T. Steinhoff, B. D. Stocker, A. J. Sutton, T. Takahashi, B. Tilbrook, G. R. van der Werf, N. Viovy, Y.-P. Wang, R. Wanninkhof, A. Wiltshire, and N. Zeng
Earth Syst. Sci. Data, 7, 47–85, https://doi.org/10.5194/essd-7-47-2015, https://doi.org/10.5194/essd-7-47-2015, 2015
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Carbon dioxide (CO2) emissions from human activities (burning fossil fuels and cement production, deforestation and other land-use change) are set to rise again in 2014.
This study (updated yearly) makes an accurate assessment of anthropogenic CO2 emissions and their redistribution between the atmosphere, ocean, and terrestrial biosphere in order to better understand the global carbon cycle, support the development of climate policies, and project future climate change.
P. G. Strutton, V. J. Coles, R. R. Hood, R. J. Matear, M. J. McPhaden, and H. E. Phillips
Biogeosciences, 12, 2367–2382, https://doi.org/10.5194/bg-12-2367-2015, https://doi.org/10.5194/bg-12-2367-2015, 2015
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In 2010, a first-of-its-kind deployment of biological sensors on a mooring in the central Indian Ocean revealed interesting variability in chlorophyll (a proxy for ocean productivity) at timescales of about 2 weeks. Using the mooring data with satellite observations and a biogeochemical model, it was determined that local wind mixing and entrainment, rather than mixed Rossby gravity waves, were likely responsible for much of the observed variability.
F. Fendereski, M. Vogt, M. R. Payne, Z. Lachkar, N. Gruber, A. Salmanmahiny, and S. A. Hosseini
Biogeosciences, 11, 6451–6470, https://doi.org/10.5194/bg-11-6451-2014, https://doi.org/10.5194/bg-11-6451-2014, 2014
T. Rixen, A. Baum, B. Gaye, and B. Nagel
Biogeosciences, 11, 5733–5747, https://doi.org/10.5194/bg-11-5733-2014, https://doi.org/10.5194/bg-11-5733-2014, 2014
W. Koeve, O. Duteil, A. Oschlies, P. Kähler, and J. Segschneider
Geosci. Model Dev., 7, 2393–2408, https://doi.org/10.5194/gmd-7-2393-2014, https://doi.org/10.5194/gmd-7-2393-2014, 2014
M. R. Stukel, V. J. Coles, M. T. Brooks, and R. R. Hood
Biogeosciences, 11, 3259–3278, https://doi.org/10.5194/bg-11-3259-2014, https://doi.org/10.5194/bg-11-3259-2014, 2014
C. Le Quéré, G. P. Peters, R. J. Andres, R. M. Andrew, T. A. Boden, P. Ciais, P. Friedlingstein, R. A. Houghton, G. Marland, R. Moriarty, S. Sitch, P. Tans, A. Arneth, A. Arvanitis, D. C. E. Bakker, L. Bopp, J. G. Canadell, L. P. Chini, S. C. Doney, A. Harper, I. Harris, J. I. House, A. K. Jain, S. D. Jones, E. Kato, R. F. Keeling, K. Klein Goldewijk, A. Körtzinger, C. Koven, N. Lefèvre, F. Maignan, A. Omar, T. Ono, G.-H. Park, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. Schwinger, J. Segschneider, B. D. Stocker, T. Takahashi, B. Tilbrook, S. van Heuven, N. Viovy, R. Wanninkhof, A. Wiltshire, and S. Zaehle
Earth Syst. Sci. Data, 6, 235–263, https://doi.org/10.5194/essd-6-235-2014, https://doi.org/10.5194/essd-6-235-2014, 2014
E. J. D'Sa, J. I. Goes, H. Gomes, and C. Mouw
Biogeosciences, 11, 3225–3244, https://doi.org/10.5194/bg-11-3225-2014, https://doi.org/10.5194/bg-11-3225-2014, 2014
A. Flohr, A. K. van der Plas, K.-C. Emeis, V. Mohrholz, and T. Rixen
Biogeosciences, 11, 885–897, https://doi.org/10.5194/bg-11-885-2014, https://doi.org/10.5194/bg-11-885-2014, 2014
G. Turi, Z. Lachkar, and N. Gruber
Biogeosciences, 11, 671–690, https://doi.org/10.5194/bg-11-671-2014, https://doi.org/10.5194/bg-11-671-2014, 2014
B. Gaye, B. Nagel, K. Dähnke, T. Rixen, N. Lahajnar, and K.-C. Emeis
Biogeosciences, 10, 7689–7702, https://doi.org/10.5194/bg-10-7689-2013, https://doi.org/10.5194/bg-10-7689-2013, 2013
V. Cocco, F. Joos, M. Steinacher, T. L. Frölicher, L. Bopp, J. Dunne, M. Gehlen, C. Heinze, J. Orr, A. Oschlies, B. Schneider, J. Segschneider, and J. Tjiputra
Biogeosciences, 10, 1849–1868, https://doi.org/10.5194/bg-10-1849-2013, https://doi.org/10.5194/bg-10-1849-2013, 2013
F. Joos, R. Roth, J. S. Fuglestvedt, G. P. Peters, I. G. Enting, W. von Bloh, V. Brovkin, E. J. Burke, M. Eby, N. R. Edwards, T. Friedrich, T. L. Frölicher, P. R. Halloran, P. B. Holden, C. Jones, T. Kleinen, F. T. Mackenzie, K. Matsumoto, M. Meinshausen, G.-K. Plattner, A. Reisinger, J. Segschneider, G. Shaffer, M. Steinacher, K. Strassmann, K. Tanaka, A. Timmermann, and A. J. Weaver
Atmos. Chem. Phys., 13, 2793–2825, https://doi.org/10.5194/acp-13-2793-2013, https://doi.org/10.5194/acp-13-2793-2013, 2013
J. Segschneider, A. Beitsch, C. Timmreck, V. Brovkin, T. Ilyina, J. Jungclaus, S. J. Lorenz, K. D. Six, and D. Zanchettin
Biogeosciences, 10, 669–687, https://doi.org/10.5194/bg-10-669-2013, https://doi.org/10.5194/bg-10-669-2013, 2013
P. Wang, A. B. Burd, M. A. Moran, R. R. Hood, V. J. Coles, and P. L. Yager
Biogeosciences Discuss., https://doi.org/10.5194/bgd-10-815-2013, https://doi.org/10.5194/bgd-10-815-2013, 2013
Revised manuscript not accepted
C. Hauri, N. Gruber, M. Vogt, S. C. Doney, R. A. Feely, Z. Lachkar, A. Leinweber, A. M. P. McDonnell, M. Munnich, and G.-K. Plattner
Biogeosciences, 10, 193–216, https://doi.org/10.5194/bg-10-193-2013, https://doi.org/10.5194/bg-10-193-2013, 2013
Related subject area
Biogeochemistry: Open Ocean
Testing the influence of light on nitrite cycling in the eastern tropical North Pacific
Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary
Technical note: Assessment of float pH data quality control methods – a case study in the subpolar northwest Atlantic Ocean
Linking northeastern North Pacific oxygen changes to upstream surface outcrop variations
Underestimation of multi-decadal global O2 loss due to an optimal interpolation method
Reviews and syntheses: expanding the global coverage of gross primary production and net community production measurements using Biogeochemical-Argo floats
Characteristics of surface physical and biogeochemical parameters within mesoscale eddies in the Southern Ocean
Phosphomonoesterase and phosphodiesterase activities in the Eastern Mediterranean Sea during stratified versus mixed conditions
Seasonal dynamics and annual budget of dissolved inorganic carbon in the northwestern Mediterranean deep-convection region
The fingerprint of climate variability on the surface ocean cycling of iron and its isotopes
Reconstructing the ocean's mesopelagic zone carbon budget: sensitivity and estimation of parameters associated with prokaryotic remineralization
Seasonal cycles of biogeochemical fluxes in the Scotia Sea, Southern Ocean: a stable isotope approach
Absence of photophysiological response to iron addition in autumn phytoplankton in the Antarctic sea-ice zone
Optimal parameters for the ocean's nutrient, carbon, and oxygen cycles compensate for circulation biases but replumb the biological pump
Importance of multiple sources of iron for the upper-ocean biogeochemistry over the northern Indian Ocean
Exploring the role of different data types and timescales in the quality of marine biogeochemical model calibration
All about nitrite: exploring nitrite sources and sinks in the eastern tropical North Pacific oxygen minimum zone
Fossil coccolith morphological attributes as a new proxy for deep ocean carbonate chemistry
Reconstructing ocean carbon storage with CMIP6 Earth system models and synthetic Argo observations
Using machine learning and Biogeochemical-Argo (BGC-Argo) floats to assess biogeochemical models and optimize observing system design
The representation of alkalinity and the carbonate pump from CMIP5 to CMIP6 Earth system models and implications for the carbon cycle
North Atlantic patterns of primary production and phenology in two Earth System Models
Model estimates of metazoans' contributions to the biological carbon pump
Tracing differences in iron supply to the Mid-Atlantic Ridge valley between hydrothermal vent sites: implications for the addition of iron to the deep ocean
Nitrite cycling in the primary nitrite maxima of the eastern tropical North Pacific
Hotspots and drivers of compound marine heatwaves and low net primary production extremes
Ecosystem impacts of marine heat waves in the northeast Pacific
Tracing the role of Arctic shelf processes in Si and N cycling and export through the Fram Strait: insights from combined silicon and nitrate isotopes
Controls on the relative abundances and rates of nitrifying microorganisms in the ocean
The response of diazotrophs to nutrient amendment in the South China Sea and western North Pacific
Influence of GEOTRACES data distribution and misfit function choice on objective parameter retrieval in a marine zinc cycle model
Physiological flexibility of phytoplankton impacts modelled chlorophyll and primary production across the North Pacific Ocean
Observation-constrained estimates of the global ocean carbon sink from Earth system models
Early winter barium excess in the southern Indian Ocean as an annual remineralisation proxy (GEOTRACES GIPr07 cruise)
Controlling factors on the global distribution of a representative marine non-cyanobacterial diazotroph phylotype (Gamma A)
Summer trends and drivers of sea surface fCO2 and pH changes observed in the southern Indian Ocean over the last two decades (1998–2019)
Global nutrient cycling by commercially targeted marine fish
Major processes of the dissolved cobalt cycle in the North and equatorial Pacific Ocean
The impact of the South-East Madagascar Bloom on the oceanic CO2 sink
Nitrite regeneration in the oligotrophic Atlantic Ocean
Bridging the gaps between particulate backscattering measurements and modeled particulate organic carbon in the ocean
Biological production in two contrasted regions of the Mediterranean Sea during the oligotrophic period: an estimate based on the diel cycle of optical properties measured by BioGeoChemical-Argo profiling floats
Acidification of the Nordic Seas
Reconstruction of global surface ocean pCO2 using region-specific predictors based on a stepwise FFNN regression algorithm
Biogeochemical controls on ammonium accumulation in the surface layer of the Southern Ocean
Oxygen export to the deep ocean following Labrador Sea Water formation
N2 fixation in the Mediterranean Sea related to the composition of the diazotrophic community and impact of dust under present and future environmental conditions
Dissolution of a submarine carbonate platform by a submerged lake of acidic seawater
Seasonal flux patterns and carbon transport from low-oxygen eddies at the Cape Verde Ocean Observatory: lessons learned from a time series sediment trap study (2009–2016)
Subsurface iron accumulation and rapid aluminum removal in the Mediterranean following African dust deposition
Nicole M. Travis, Colette L. Kelly, and Karen L. Casciotti
Biogeosciences, 21, 1985–2004, https://doi.org/10.5194/bg-21-1985-2024, https://doi.org/10.5194/bg-21-1985-2024, 2024
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We conducted experimental manipulations of light level on microbial communities from the primary nitrite maximum. Overall, while individual microbial processes have different directions and magnitudes in their response to increasing light, the net community response is a decline in nitrite production with increasing light. We conclude that while increased light may decrease net nitrite production, high-light conditions alone do not exclude nitrification from occurring in the surface ocean.
Zoë Rebecca van Kemenade, Zeynep Erdem, Ellen Christine Hopmans, Jaap Smede Sinninghe Damsté, and Darci Rush
Biogeosciences, 21, 1517–1532, https://doi.org/10.5194/bg-21-1517-2024, https://doi.org/10.5194/bg-21-1517-2024, 2024
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The California Current system (CCS) hosts the eastern subtropical North Pacific oxygen minimum zone (ESTNP OMZ). This study shows anaerobic ammonium oxidizing (anammox) bacteria cause a loss of bioavailable nitrogen (N) in the ESTNP OMZ throughout the late Quaternary. Anammox occurred during both glacial and interglacial periods and was driven by the supply of organic matter and changes in ocean currents. These findings may have important consequences for biogeochemical models of the CCS.
Cathy Wimart-Rousseau, Tobias Steinhoff, Birgit Klein, Henry Bittig, and Arne Körtzinger
Biogeosciences, 21, 1191–1211, https://doi.org/10.5194/bg-21-1191-2024, https://doi.org/10.5194/bg-21-1191-2024, 2024
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The marine CO2 system can be measured independently and continuously by BGC-Argo floats since numerous pH sensors have been developed to suit these autonomous measurements platforms. By applying the Argo correction routines to float pH data acquired in the subpolar North Atlantic Ocean, we report the uncertainty and lack of objective criteria associated with the choice of the reference method as well the reference depth for the pH correction.
Sabine Mecking and Kyla Drushka
Biogeosciences, 21, 1117–1133, https://doi.org/10.5194/bg-21-1117-2024, https://doi.org/10.5194/bg-21-1117-2024, 2024
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This study investigates whether northeastern North Pacific oxygen changes may be caused by surface density changes in the northwest as water moves along density horizons from the surface into the subsurface ocean. A correlation is found with a lag that about matches the travel time of water from the northwest to the northeast. Salinity is the main driver causing decadal changes in surface density, whereas salinity and temperature contribute about equally to long-term declining density trends.
Takamitsu Ito, Hernan E. Garcia, Zhankun Wang, Shoshiro Minobe, Matthew C. Long, Just Cebrian, James Reagan, Tim Boyer, Christopher Paver, Courtney Bouchard, Yohei Takano, Seth Bushinsky, Ahron Cervania, and Curtis A. Deutsch
Biogeosciences, 21, 747–759, https://doi.org/10.5194/bg-21-747-2024, https://doi.org/10.5194/bg-21-747-2024, 2024
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This study aims to estimate how much oceanic oxygen has been lost and its uncertainties. One major source of uncertainty comes from the statistical gap-filling methods. Outputs from Earth system models are used to generate synthetic observations where oxygen data are extracted from the model output at the location and time of historical oceanographic cruises. Reconstructed oxygen trend is approximately two-thirds of the true trend.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
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This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Qian Liu, Yingjie Liu, and Xiaofeng Li
Biogeosciences, 20, 4857–4874, https://doi.org/10.5194/bg-20-4857-2023, https://doi.org/10.5194/bg-20-4857-2023, 2023
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In the Southern Ocean, abundant eddies behave opposite to our expectations. That is, anticyclonic (cyclonic) eddies are cold (warm). By investigating the variations of physical and biochemical parameters in eddies, we find that abnormal eddies have unique and significant effects on modulating the parameters. This study fills a gap in understanding the effects of abnormal eddies on physical and biochemical parameters in the Southern Ocean.
France Van Wambeke, Pascal Conan, Mireille Pujo-Pay, Vincent Taillandier, Olivier Crispi, and Elvira Pulido-Villena
EGUsphere, https://doi.org/10.5194/egusphere-2023-2578, https://doi.org/10.5194/egusphere-2023-2578, 2023
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Distribution of phosphomonoesterase (PME) and phosphodiesterase (PDE) activities over the epipelagic zone are described in the eastern Mediterranean Sea, in winter and spring. The type of concentration kinetics obtained for PDE (saturation at 50 µM, high Km, high turnovertimes) compared to those of PME (saturation at 1 µM, low Km, low turnovertimes) are discussed in regard to possible inequal distribution of PDE and PME among organic material size continuum, and accessibility to phosphodiesters.
Caroline Ulses, Claude Estournel, Patrick Marsaleix, Karline Soetaert, Marine Fourrier, Laurent Coppola, Dominique Lefèvre, Franck Touratier, Catherine Goyet, Véronique Guglielmi, Fayçal Kessouri, Pierre Testor, and Xavier Durrieu de Madron
Biogeosciences, 20, 4683–4710, https://doi.org/10.5194/bg-20-4683-2023, https://doi.org/10.5194/bg-20-4683-2023, 2023
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Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, considered to be a hotspot of biodiversity and climate change. In this study, we investigate the seasonal and annual budget of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea.
Daniela König and Alessandro Tagliabue
Biogeosciences, 20, 4197–4212, https://doi.org/10.5194/bg-20-4197-2023, https://doi.org/10.5194/bg-20-4197-2023, 2023
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Using model simulations, we show that natural and anthropogenic changes in the global climate leave a distinct fingerprint in the isotopic signatures of iron in the surface ocean. We find that these climate effects on iron isotopes are often caused by the redistribution of iron from different external sources to the ocean, due to changes in ocean currents, and by changes in algal growth, which take up iron. Thus, isotopes may help detect climate-induced changes in iron supply and algal uptake.
Chloé Baumas, Robin Fuchs, Marc Garel, Jean-Christophe Poggiale, Laurent Memery, Frédéric A. C. Le Moigne, and Christian Tamburini
Biogeosciences, 20, 4165–4182, https://doi.org/10.5194/bg-20-4165-2023, https://doi.org/10.5194/bg-20-4165-2023, 2023
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Through the sink of particles in the ocean, carbon (C) is exported and sequestered when reaching 1000 m. Attempts to quantify C exported vs. C consumed by heterotrophs have increased. Yet most of the conducted estimations have led to C demands several times higher than C export. The choice of parameters greatly impacts the results. As theses parameters are overlooked, non-accurate values are often used. In this study we show that C budgets can be well balanced when using appropriate values.
Anna Belcher, Sian F. Henley, Katharine Hendry, Marianne Wootton, Lisa Friberg, Ursula Dallman, Tong Wang, Christopher Coath, and Clara Manno
Biogeosciences, 20, 3573–3591, https://doi.org/10.5194/bg-20-3573-2023, https://doi.org/10.5194/bg-20-3573-2023, 2023
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The oceans play a crucial role in the uptake of atmospheric carbon dioxide, particularly the Southern Ocean. The biological pumping of carbon from the surface to the deep ocean is key to this. Using sediment trap samples from the Scotia Sea, we examine biogeochemical fluxes of carbon, nitrogen, and biogenic silica and their stable isotope compositions. We find phytoplankton community structure and physically mediated processes are important controls on particulate fluxes to the deep ocean.
Asmita Singh, Susanne Fietz, Sandy J. Thomalla, Nicolas Sanchez, Murat V. Ardelan, Sébastien Moreau, Hanna M. Kauko, Agneta Fransson, Melissa Chierici, Saumik Samanta, Thato N. Mtshali, Alakendra N. Roychoudhury, and Thomas J. Ryan-Keogh
Biogeosciences, 20, 3073–3091, https://doi.org/10.5194/bg-20-3073-2023, https://doi.org/10.5194/bg-20-3073-2023, 2023
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Despite the scarcity of iron in the Southern Ocean, seasonal blooms occur due to changes in nutrient and light availability. Surprisingly, during an autumn bloom in the Antarctic sea-ice zone, the results from incubation experiments showed no significant photophysiological response of phytoplankton to iron addition. This suggests that ambient iron concentrations were sufficient, challenging the notion of iron deficiency in the Southern Ocean through extended iron-replete post-bloom conditions.
Benoît Pasquier, Mark Holzer, Matthew A. Chamberlain, Richard J. Matear, Nathaniel L. Bindoff, and François W. Primeau
Biogeosciences, 20, 2985–3009, https://doi.org/10.5194/bg-20-2985-2023, https://doi.org/10.5194/bg-20-2985-2023, 2023
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Modeling the ocean's carbon and oxygen cycles accurately is challenging. Parameter optimization improves the fit to observed tracers but can introduce artifacts in the biological pump. Organic-matter production and subsurface remineralization rates adjust to compensate for circulation biases, changing the pathways and timescales with which nutrients return to the surface. Circulation biases can thus strongly alter the system’s response to ecological change, even when parameters are optimized.
Priyanka Banerjee
Biogeosciences, 20, 2613–2643, https://doi.org/10.5194/bg-20-2613-2023, https://doi.org/10.5194/bg-20-2613-2023, 2023
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This study shows that atmospheric deposition is the most important source of iron to the upper northern Indian Ocean for phytoplankton growth. This is followed by iron from continental-shelf sediment. Phytoplankton increase following iron addition is possible only with high background levels of nitrate. Vertical mixing is the most important physical process supplying iron to the upper ocean in this region throughout the year. The importance of ocean currents in supplying iron varies seasonally.
Iris Kriest, Julia Getzlaff, Angela Landolfi, Volkmar Sauerland, Markus Schartau, and Andreas Oschlies
Biogeosciences, 20, 2645–2669, https://doi.org/10.5194/bg-20-2645-2023, https://doi.org/10.5194/bg-20-2645-2023, 2023
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Global biogeochemical ocean models are often subjectively assessed and tuned against observations. We applied different strategies to calibrate a global model against observations. Although the calibrated models show similar tracer distributions at the surface, they differ in global biogeochemical fluxes, especially in global particle flux. Simulated global volume of oxygen minimum zones varies strongly with calibration strategy and over time, rendering its temporal extrapolation difficult.
John C. Tracey, Andrew R. Babbin, Elizabeth Wallace, Xin Sun, Katherine L. DuRussel, Claudia Frey, Donald E. Martocello III, Tyler Tamasi, Sergey Oleynik, and Bess B. Ward
Biogeosciences, 20, 2499–2523, https://doi.org/10.5194/bg-20-2499-2023, https://doi.org/10.5194/bg-20-2499-2023, 2023
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Nitrogen (N) is essential for life; thus, its availability plays a key role in determining marine productivity. Using incubations of seawater spiked with a rare form of N measurable on a mass spectrometer, we quantified microbial pathways that determine marine N availability. The results show that pathways that recycle N have higher rates than those that result in its loss from biomass and present new evidence for anaerobic nitrite oxidation, a process long thought to be strictly aerobic.
Amanda Gerotto, Hongrui Zhang, Renata Hanae Nagai, Heather M. Stoll, Rubens César Lopes Figueira, Chuanlian Liu, and Iván Hernández-Almeida
Biogeosciences, 20, 1725–1739, https://doi.org/10.5194/bg-20-1725-2023, https://doi.org/10.5194/bg-20-1725-2023, 2023
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Based on the analysis of the response of coccolithophores’ morphological attributes in a laboratory dissolution experiment and surface sediment samples from the South China Sea, we proposed that the thickness shape (ks) factor of fossil coccoliths together with the normalized ks variation, which is the ratio of the standard deviation of ks (σ) over the mean ks (σ/ks), is a robust and novel proxy to reconstruct past changes in deep ocean carbon chemistry.
Katherine E. Turner, Doug M. Smith, Anna Katavouta, and Richard G. Williams
Biogeosciences, 20, 1671–1690, https://doi.org/10.5194/bg-20-1671-2023, https://doi.org/10.5194/bg-20-1671-2023, 2023
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We present a new method for reconstructing ocean carbon using climate models and temperature and salinity observations. To test this method, we reconstruct modelled carbon using synthetic observations consistent with current sampling programmes. Sensitivity tests show skill in reconstructing carbon trends and variability within the upper 2000 m. Our results indicate that this method can be used for a new global estimate for ocean carbon content.
Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
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Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
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Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Jenny Hieronymus, Magnus Hieronymus, Matthias Gröger, Jörg Schwinger, Raffaele Bernadello, Etienne Tourigny, Valentina Sicardi, Itzel Ruvalcaba Baroni, and Klaus Wyser
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-54, https://doi.org/10.5194/bg-2023-54, 2023
Revised manuscript accepted for BG
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Changes in the seasonality of primary production has been examined using daily data from two earth system models covering the period 1750–2100. The daily data made it possible to detect shifts in the day of the year during which the net primary production reaches its peak value. It was found that the day of peak primary production occurs earlier and earlier during the 21st century and that a major change in the time series occurs in the beginning of the 21st century.
Jérôme Pinti, Tim DeVries, Tommy Norin, Camila Serra-Pompei, Roland Proud, David A. Siegel, Thomas Kiørboe, Colleen M. Petrik, Ken H. Andersen, Andrew S. Brierley, and André W. Visser
Biogeosciences, 20, 997–1009, https://doi.org/10.5194/bg-20-997-2023, https://doi.org/10.5194/bg-20-997-2023, 2023
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Large numbers of marine organisms such as zooplankton and fish perform daily vertical migration between the surface (at night) and the depths (in the daytime). This fascinating migration is important for the carbon cycle, as these organisms actively bring carbon to depths where it is stored away from the atmosphere for a long time. Here, we quantify the contributions of different animals to this carbon drawdown and storage and show that fish are important to the biological carbon pump.
Alastair J. M. Lough, Alessandro Tagliabue, Clément Demasy, Joseph A. Resing, Travis Mellett, Neil J. Wyatt, and Maeve C. Lohan
Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, https://doi.org/10.5194/bg-20-405-2023, 2023
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Iron is a key nutrient for ocean primary productivity. Hydrothermal vents are a source of iron to the oceans, but the size of this source is poorly understood. This study examines the variability in iron inputs between hydrothermal vents in different geological settings. The vents studied release different amounts of Fe, resulting in plumes with similar dissolved iron concentrations but different particulate concentrations. This will help to refine modelling of iron-limited ocean productivity.
Nicole M. Travis, Colette L. Kelly, Margaret R. Mulholland, and Karen L. Casciotti
Biogeosciences, 20, 325–347, https://doi.org/10.5194/bg-20-325-2023, https://doi.org/10.5194/bg-20-325-2023, 2023
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The primary nitrite maximum is a ubiquitous upper ocean feature where nitrite accumulates, but we still do not understand its formation and the co-occurring microbial processes involved. Using correlative methods and rates measurements, we found strong spatial patterns between environmental conditions and depths of the nitrite maxima, but not the maximum concentrations. Nitrification was the dominant source of nitrite, with occasional high nitrite production from phytoplankton near the coast.
Natacha Le Grix, Jakob Zscheischler, Keith B. Rodgers, Ryohei Yamaguchi, and Thomas L. Frölicher
Biogeosciences, 19, 5807–5835, https://doi.org/10.5194/bg-19-5807-2022, https://doi.org/10.5194/bg-19-5807-2022, 2022
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Compound events threaten marine ecosystems. Here, we investigate the potentially harmful combination of marine heatwaves with low phytoplankton productivity. Using satellite-based observations, we show that these compound events are frequent in the low latitudes. We then investigate the drivers of these compound events using Earth system models. The models share similar drivers in the low latitudes but disagree in the high latitudes due to divergent factors limiting phytoplankton production.
Abigale M. Wyatt, Laure Resplandy, and Adrian Marchetti
Biogeosciences, 19, 5689–5705, https://doi.org/10.5194/bg-19-5689-2022, https://doi.org/10.5194/bg-19-5689-2022, 2022
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Marine heat waves (MHWs) are a frequent event in the northeast Pacific, with a large impact on the region's ecosystems. Large phytoplankton in the North Pacific Transition Zone are greatly affected by decreased nutrients, with less of an impact in the Alaskan Gyre. For small phytoplankton, MHWs increase the spring small phytoplankton population in both regions thanks to reduced light limitation. In both zones, this results in a significant decrease in the ratio of large to small phytoplankton.
Margot C. F. Debyser, Laetitia Pichevin, Robyn E. Tuerena, Paul A. Dodd, Antonia Doncila, and Raja S. Ganeshram
Biogeosciences, 19, 5499–5520, https://doi.org/10.5194/bg-19-5499-2022, https://doi.org/10.5194/bg-19-5499-2022, 2022
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We focus on the exchange of key nutrients for algae production between the Arctic and Atlantic oceans through the Fram Strait. We show that the export of dissolved silicon here is controlled by the availability of nitrate which is influenced by denitrification on Arctic shelves. We suggest that any future changes in the river inputs of silica and changes in denitrification due to climate change will impact the amount of silicon exported, with impacts on Atlantic algal productivity and ecology.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Zuozhu Wen, Thomas J. Browning, Rongbo Dai, Wenwei Wu, Weiying Li, Xiaohua Hu, Wenfang Lin, Lifang Wang, Xin Liu, Zhimian Cao, Haizheng Hong, and Dalin Shi
Biogeosciences, 19, 5237–5250, https://doi.org/10.5194/bg-19-5237-2022, https://doi.org/10.5194/bg-19-5237-2022, 2022
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Fe and P are key factors controlling the biogeography and activity of marine N2-fixing microorganisms. We found lower abundance and activity of N2 fixers in the northern South China Sea than around the western boundary of the North Pacific, and N2 fixation rates switched from Fe–P co-limitation to P limitation. We hypothesize the Fe supply rates and Fe utilization strategies of each N2 fixer are important in regulating spatial variability in community structure across the study area.
Claudia Eisenring, Sophy E. Oliver, Samar Khatiwala, and Gregory F. de Souza
Biogeosciences, 19, 5079–5106, https://doi.org/10.5194/bg-19-5079-2022, https://doi.org/10.5194/bg-19-5079-2022, 2022
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Given the sparsity of observational constraints on micronutrients such as zinc (Zn), we assess the sensitivities of a framework for objective parameter optimisation in an oceanic Zn cycling model. Our ensemble of optimisations towards synthetic data with varying kinds of uncertainty shows that deficiencies related to model complexity and the choice of the misfit function generally have a greater impact on the retrieval of model Zn uptake behaviour than does the limitation of data coverage.
Yoshikazu Sasai, Sherwood Lan Smith, Eko Siswanto, Hideharu Sasaki, and Masami Nonaka
Biogeosciences, 19, 4865–4882, https://doi.org/10.5194/bg-19-4865-2022, https://doi.org/10.5194/bg-19-4865-2022, 2022
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We have investigated the adaptive response of phytoplankton growth to changing light, nutrients, and temperature over the North Pacific using two physical-biological models. We compare modeled chlorophyll and primary production from an inflexible control model (InFlexPFT), which assumes fixed carbon (C):nitrogen (N):chlorophyll (Chl) ratios, to a recently developed flexible phytoplankton functional type model (FlexPFT), which incorporates photoacclimation and variable C:N:Chl ratios.
Jens Terhaar, Thomas L. Frölicher, and Fortunat Joos
Biogeosciences, 19, 4431–4457, https://doi.org/10.5194/bg-19-4431-2022, https://doi.org/10.5194/bg-19-4431-2022, 2022
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Estimates of the ocean sink of anthropogenic carbon vary across various approaches. We show that the global ocean carbon sink can be estimated by three parameters, two of which approximate the ocean ventilation in the Southern Ocean and the North Atlantic, and one of which approximates the chemical capacity of the ocean to take up carbon. With observations of these parameters, we estimate that the global ocean carbon sink is 10 % larger than previously assumed, and we cut uncertainties in half.
Natasha René van Horsten, Hélène Planquette, Géraldine Sarthou, Thomas James Ryan-Keogh, Nolwenn Lemaitre, Thato Nicholas Mtshali, Alakendra Roychoudhury, and Eva Bucciarelli
Biogeosciences, 19, 3209–3224, https://doi.org/10.5194/bg-19-3209-2022, https://doi.org/10.5194/bg-19-3209-2022, 2022
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The remineralisation proxy, barite, was measured along 30°E in the southern Indian Ocean during early austral winter. To our knowledge this is the first reported Southern Ocean winter study. Concentrations throughout the water column were comparable to observations during spring to autumn. By linking satellite primary production to this proxy a possible annual timescale is proposed. These findings also suggest possible carbon remineralisation from satellite data on a basin scale.
Zhibo Shao and Ya-Wei Luo
Biogeosciences, 19, 2939–2952, https://doi.org/10.5194/bg-19-2939-2022, https://doi.org/10.5194/bg-19-2939-2022, 2022
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Non-cyanobacterial diazotrophs (NCDs) may be an important player in fixing N2 in the ocean. By conducting meta-analyses, we found that a representative marine NCD phylotype, Gamma A, tends to inhabit ocean environments with high productivity, low iron concentration and high light intensity. It also appears to be more abundant inside cyclonic eddies. Our study suggests a niche differentiation of NCDs from cyanobacterial diazotrophs as the latter prefers low-productivity and high-iron oceans.
Coraline Leseurre, Claire Lo Monaco, Gilles Reverdin, Nicolas Metzl, Jonathan Fin, Claude Mignon, and Léa Benito
Biogeosciences, 19, 2599–2625, https://doi.org/10.5194/bg-19-2599-2022, https://doi.org/10.5194/bg-19-2599-2022, 2022
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Decadal trends of fugacity of CO2 (fCO2), total alkalinity (AT), total carbon (CT) and pH in surface waters are investigated in different domains of the southern Indian Ocean (45°S–57°S) from ongoing and station observations regularly conducted in summer over the period 1998–2019. The fCO2 increase and pH decrease are mainly driven by anthropogenic CO2 estimated just below the summer mixed layer, as well as by a warming south of the polar front or in the fertilized waters near Kerguelen Island.
Priscilla Le Mézo, Jérôme Guiet, Kim Scherrer, Daniele Bianchi, and Eric Galbraith
Biogeosciences, 19, 2537–2555, https://doi.org/10.5194/bg-19-2537-2022, https://doi.org/10.5194/bg-19-2537-2022, 2022
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This study quantifies the role of commercially targeted fish biomass in the cycling of three important nutrients (N, P, and Fe), relative to nutrients otherwise available in water and to nutrients required by primary producers, and the impact of fishing. We use a model of commercially targeted fish biomass constrained by fish catch and stock assessment data to assess the contributions of fish at the global scale, at the time of the global peak catch and prior to industrial fishing.
Rebecca Chmiel, Nathan Lanning, Allison Laubach, Jong-Mi Lee, Jessica Fitzsimmons, Mariko Hatta, William Jenkins, Phoebe Lam, Matthew McIlvin, Alessandro Tagliabue, and Mak Saito
Biogeosciences, 19, 2365–2395, https://doi.org/10.5194/bg-19-2365-2022, https://doi.org/10.5194/bg-19-2365-2022, 2022
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Dissolved cobalt is present in trace amounts in seawater and is a necessary nutrient for marine microbes. On a transect from the Alaskan coast to Tahiti, we measured seawater concentrations of dissolved cobalt. Here, we describe several interesting features of the Pacific cobalt cycle including cobalt sources along the Alaskan coast and Hawaiian vents, deep-ocean particle formation, cobalt activity in low-oxygen regions, and how our samples compare to a global biogeochemical model’s predictions.
Nicolas Metzl, Claire Lo Monaco, Coraline Leseurre, Céline Ridame, Jonathan Fin, Claude Mignon, Marion Gehlen, and Thi Tuyet Trang Chau
Biogeosciences, 19, 1451–1468, https://doi.org/10.5194/bg-19-1451-2022, https://doi.org/10.5194/bg-19-1451-2022, 2022
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During an oceanographic cruise conducted in January 2020 in the south-western Indian Ocean, we observed very low CO2 concentrations associated with a strong phytoplankton bloom that occurred south-east of Madagascar. This biological event led to a strong regional CO2 ocean sink not previously observed.
Darren R. Clark, Andrew P. Rees, Charissa M. Ferrera, Lisa Al-Moosawi, Paul J. Somerfield, Carolyn Harris, Graham D. Quartly, Stephen Goult, Glen Tarran, and Gennadi Lessin
Biogeosciences, 19, 1355–1376, https://doi.org/10.5194/bg-19-1355-2022, https://doi.org/10.5194/bg-19-1355-2022, 2022
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Measurements of microbial processes were made in the sunlit open ocean during a research cruise (AMT19) between the UK and Chile. These help us to understand how microbial communities maintain the function of remote ecosystems. We find that the nitrogen cycling microbes which produce nitrite respond to changes in the environment. Our insights will aid the development of models that aim to replicate and ultimately project how marine environments may respond to ongoing climate change.
Martí Galí, Marcus Falls, Hervé Claustre, Olivier Aumont, and Raffaele Bernardello
Biogeosciences, 19, 1245–1275, https://doi.org/10.5194/bg-19-1245-2022, https://doi.org/10.5194/bg-19-1245-2022, 2022
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Part of the organic matter produced by plankton in the upper ocean is exported to the deep ocean. This process, known as the biological carbon pump, is key for the regulation of atmospheric carbon dioxide and global climate. However, the dynamics of organic particles below the upper ocean layer are not well understood. Here we compared the measurements acquired by autonomous robots in the top 1000 m of the ocean to a numerical model, which can help improve future climate projections.
Marie Barbieux, Julia Uitz, Alexandre Mignot, Collin Roesler, Hervé Claustre, Bernard Gentili, Vincent Taillandier, Fabrizio D'Ortenzio, Hubert Loisel, Antoine Poteau, Edouard Leymarie, Christophe Penkerc'h, Catherine Schmechtig, and Annick Bricaud
Biogeosciences, 19, 1165–1194, https://doi.org/10.5194/bg-19-1165-2022, https://doi.org/10.5194/bg-19-1165-2022, 2022
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This study assesses marine biological production in two Mediterranean systems representative of vast desert-like (oligotrophic) areas encountered in the global ocean. We use a novel approach based on non-intrusive high-frequency in situ measurements by two profiling robots, the BioGeoChemical-Argo (BGC-Argo) floats. Our results indicate substantial yet variable production rates and contribution to the whole water column of the subsurface layer, typically considered steady and non-productive.
Filippa Fransner, Friederike Fröb, Jerry Tjiputra, Nadine Goris, Siv K. Lauvset, Ingunn Skjelvan, Emil Jeansson, Abdirahman Omar, Melissa Chierici, Elizabeth Jones, Agneta Fransson, Sólveig R. Ólafsdóttir, Truls Johannessen, and Are Olsen
Biogeosciences, 19, 979–1012, https://doi.org/10.5194/bg-19-979-2022, https://doi.org/10.5194/bg-19-979-2022, 2022
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Ocean acidification, a direct consequence of the CO2 release by human activities, is a serious threat to marine ecosystems. In this study, we conduct a detailed investigation of the acidification of the Nordic Seas, from 1850 to 2100, by using a large set of samples taken during research cruises together with numerical model simulations. We estimate the effects of changes in different environmental factors on the rate of acidification and its potential effects on cold-water corals.
Guorong Zhong, Xuegang Li, Jinming Song, Baoxiao Qu, Fan Wang, Yanjun Wang, Bin Zhang, Xiaoxia Sun, Wuchang Zhang, Zhenyan Wang, Jun Ma, Huamao Yuan, and Liqin Duan
Biogeosciences, 19, 845–859, https://doi.org/10.5194/bg-19-845-2022, https://doi.org/10.5194/bg-19-845-2022, 2022
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A predictor selection algorithm was constructed to decrease the predicting error in the surface ocean partial pressure of CO2 (pCO2) mapping by finding better combinations of pCO2 predictors in different regions. Compared with previous research using the same combination of predictors in all regions, using different predictors selected by the algorithm in different regions can effectively decrease pCO2 predicting errors.
Shantelle Smith, Katye E. Altieri, Mhlangabezi Mdutyana, David R. Walker, Ruan G. Parrott, Sedick Gallie, Kurt A. M. Spence, Jessica M. Burger, and Sarah E. Fawcett
Biogeosciences, 19, 715–741, https://doi.org/10.5194/bg-19-715-2022, https://doi.org/10.5194/bg-19-715-2022, 2022
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Ammonium is a crucial yet poorly understood component of the Southern Ocean nitrogen cycle. We attribute our finding of consistently high ammonium concentrations in the winter mixed layer to limited ammonium consumption and sustained ammonium production, conditions under which the Southern Ocean becomes a source of carbon dioxide to the atmosphere. From similar data collected over an annual cycle, we propose a seasonal cycle for ammonium in shallow polar waters – a first for the Southern Ocean.
Jannes Koelling, Dariia Atamanchuk, Johannes Karstensen, Patricia Handmann, and Douglas W. R. Wallace
Biogeosciences, 19, 437–454, https://doi.org/10.5194/bg-19-437-2022, https://doi.org/10.5194/bg-19-437-2022, 2022
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In this study, we investigate oxygen variability in the deep western boundary current in the Labrador Sea from multiyear moored records. We estimate that about half of the oxygen taken up in the interior Labrador Sea by air–sea gas exchange during deep water formation is exported southward the same year. Our results underline the complexity of the oxygen uptake and export in the Labrador Sea and highlight the important role this region plays in supplying oxygen to the deep ocean.
Céline Ridame, Julie Dinasquet, Søren Hallstrøm, Estelle Bigeard, Lasse Riemann, France Van Wambeke, Matthieu Bressac, Elvira Pulido-Villena, Vincent Taillandier, Fréderic Gazeau, Antonio Tovar-Sanchez, Anne-Claire Baudoux, and Cécile Guieu
Biogeosciences, 19, 415–435, https://doi.org/10.5194/bg-19-415-2022, https://doi.org/10.5194/bg-19-415-2022, 2022
Short summary
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We show that in the Mediterranean Sea spatial variability in N2 fixation is related to the diazotrophic community composition reflecting different nutrient requirements among species. Nutrient supply by Saharan dust is of great importance to diazotrophs, as shown by the strong stimulation of N2 fixation after a simulated dust event under present and future climate conditions; the magnitude of stimulation depends on the degree of limitation related to the diazotrophic community composition.
Matthew P. Humphreys, Erik H. Meesters, Henk de Haas, Szabina Karancz, Louise Delaigue, Karel Bakker, Gerard Duineveld, Siham de Goeyse, Andreas F. Haas, Furu Mienis, Sharyn Ossebaar, and Fleur C. van Duyl
Biogeosciences, 19, 347–358, https://doi.org/10.5194/bg-19-347-2022, https://doi.org/10.5194/bg-19-347-2022, 2022
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A series of submarine sinkholes were recently discovered on Luymes Bank, part of Saba Bank, a carbonate platform in the Caribbean Netherlands. Here, we investigate the waters inside these sinkholes for the first time. One of the sinkholes contained a body of dense, low-oxygen and low-pH water, which we call the
acid lake. We use measurements of seawater chemistry to work out what processes were responsible for forming the acid lake and discuss the consequences for the carbonate platform.
Gerhard Fischer, Oscar E. Romero, Johannes Karstensen, Karl-Heinz Baumann, Nasrollah Moradi, Morten Iversen, Götz Ruhland, Marco Klann, and Arne Körtzinger
Biogeosciences, 18, 6479–6500, https://doi.org/10.5194/bg-18-6479-2021, https://doi.org/10.5194/bg-18-6479-2021, 2021
Short summary
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Low-oxygen eddies in the eastern subtropical North Atlantic can form an oasis for phytoplankton growth. Here we report on particle flux dynamics at the oligotrophic Cape Verde Ocean Observatory. We observed consistent flux patterns during the passages of low-oxygen eddies. We found distinct flux peaks in late winter, clearly exceeding background fluxes. Our findings suggest that the low-oxygen eddies sequester higher organic carbon than expected for oligotrophic settings.
Matthieu Bressac, Thibaut Wagener, Nathalie Leblond, Antonio Tovar-Sánchez, Céline Ridame, Vincent Taillandier, Samuel Albani, Sophie Guasco, Aurélie Dufour, Stéphanie H. M. Jacquet, François Dulac, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 18, 6435–6453, https://doi.org/10.5194/bg-18-6435-2021, https://doi.org/10.5194/bg-18-6435-2021, 2021
Short summary
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Phytoplankton growth is limited by the availability of iron in about 50 % of the ocean. Atmospheric deposition of desert dust represents a key source of iron. Here, we present direct observations of dust deposition in the Mediterranean Sea. A key finding is that the input of iron from dust primarily occurred in the deep ocean, while previous studies mainly focused on the ocean surface. This new insight will enable us to better represent controls on global marine productivity in models.
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Short summary
The northern Indian Ocean hosts an extensive oxygen minimum zone (OMZ), which intensified due to human-induced global changes. This includes the occurrence of anoxic events on the Indian shelf and affects benthic ecosystems and the pelagic ecosystem structure in the Arabian Sea. Consequences for biogeochemical cycles are unknown, which, in addition to the poor representation of mesoscale features, reduces the reliability of predictions of the future OMZ development in the northern Indian Ocean.
The northern Indian Ocean hosts an extensive oxygen minimum zone (OMZ), which intensified due to...
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