Articles | Volume 17, issue 24
https://doi.org/10.5194/bg-17-6475-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-6475-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
22 Dec 2020
Research article |
| 22 Dec 2020
| 22 Dec 2020
Silicon uptake and isotope fractionation dynamics by crop species
GFZ German Research Centre for Geosciences, Potsdam, 14473, Germany
Rainer Remus
Working Group “Isotope Biogeochemistry & Gas Fluxes”, Leibniz Centre for Agricultural Landscape Research (ZALF),
Müncheberg, 15374, Germany
Michael Sommer
Working Group “Silicon Biogeochemistry”, Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, 15374, Germany
Institute of Environmental Science and Geography, University of
Potsdam, Potsdam, 14476, Germany
Jürgen Augustin
Working Group “Isotope Biogeochemistry & Gas Fluxes”, Leibniz Centre for Agricultural Landscape Research (ZALF),
Müncheberg, 15374, Germany
Danuta Kaczorek
Working Group “Silicon Biogeochemistry”, Leibniz Centre for Agricultural Landscape Research (ZALF), Müncheberg, 15374, Germany
Friedhelm von Blanckenburg
GFZ German Research Centre for Geosciences, Potsdam, 14473, Germany
Institute of Geological Science, Freie Universität Berlin, Berlin,
12249, Germany
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Rahmantara Trichandi, Klaus Bauer, Trond Ryberg, Benjamin Heit, Jaime Araya Vargas, Friedhelm von Blanckenburg, and Charlotte M. Krawczyk
Earth Surf. Dynam., 12, 747–763, https://doi.org/10.5194/esurf-12-747-2024, https://doi.org/10.5194/esurf-12-747-2024, 2024
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This study investigates subsurface weathering zones, revealing their structure through shear wave velocity variations. The research focuses on the arid climate of Pan de Azúcar National Park, Chile, using seismic ambient noise recordings to construct pseudo-3D models. The resulting models show the subsurface structure, including granite gradients and mafic dike intrusions. Comparison with other sites emphasizes the intricate relationship between climate, geology, and weathering depth.
Adrian Dahlmann, Mathias Hoffmann, Gernot Verch, Marten Schmidt, Michael Sommer, Jürgen Augustin, and Maren Dubbert
Hydrol. Earth Syst. Sci., 27, 3851–3873, https://doi.org/10.5194/hess-27-3851-2023, https://doi.org/10.5194/hess-27-3851-2023, 2023
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Evapotranspiration (ET) plays a pivotal role in terrestrial water cycling, returning up to 90 % of precipitation to the atmosphere. We studied impacts of soil type and management on an agroecosystem using an automated system with modern modeling approaches. We modeled ET at high spatial and temporal resolution to highlight differences in heterogeneous soils on an hourly basis. Our results show significant differences in yield and smaller differences in ET overall, impacting water use efficiency.
Ferdinand J. Hampl, Ferry Schiperski, Christopher Schwerdhelm, Nicole Stroncik, Casey Bryce, Friedhelm von
Blanckenburg, and Thomas Neumann
Earth Surf. Dynam., 11, 511–528, https://doi.org/10.5194/esurf-11-511-2023, https://doi.org/10.5194/esurf-11-511-2023, 2023
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We investigated the mineral content and geochemical composition of the upper 6 m of regolith, formed by weathering of granitic rocks in Mediterranean and humid climate zones. We found that the development of the upper regolith in the Mediterranean climate is controlled by secondary minerals which cause fracturing and thus facilitate fluid infiltration to depth. The upper regolith in the humid climate is controlled by secondary minerals that cause a reduction of fluid infiltration to depth.
Peter Stimmler, Mathias Goeckede, Bo Elberling, Susan Natali, Peter Kuhry, Nia Perron, Fabrice Lacroix, Gustaf Hugelius, Oliver Sonnentag, Jens Strauss, Christina Minions, Michael Sommer, and Jörg Schaller
Earth Syst. Sci. Data, 15, 1059–1075, https://doi.org/10.5194/essd-15-1059-2023, https://doi.org/10.5194/essd-15-1059-2023, 2023
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Arctic soils store large amounts of carbon and nutrients. The availability of nutrients, such as silicon, calcium, iron, aluminum, phosphorus, and amorphous silica, is crucial to understand future carbon fluxes in the Arctic. Here, we provide, for the first time, a unique dataset of the availability of the abovementioned nutrients for the different soil layers, including the currently frozen permafrost layer. We relate these data to several geographical and geological parameters.
Marc Wehrhan, Daniel Puppe, Danuta Kaczorek, and Michael Sommer
Biogeosciences, 18, 5163–5183, https://doi.org/10.5194/bg-18-5163-2021, https://doi.org/10.5194/bg-18-5163-2021, 2021
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UAS remote sensing provides a promising tool for new insights into Si biogeochemistry at catchment scale. Our study on an artificial catchment shows surprisingly high silicon stocks in the biomass of two grass species (C. epigejos, 7 g m−2; P. australis, 27 g m−2). The distribution of initial sediment properties (clay, Tiron-extractable Si, nitrogen, plant-available potassium) controlled the spatial distribution of C. epigejos. Soil wetness determined the occurrence of P. australis.
Travis Clow, Jane K. Willenbring, Mirjam Schaller, Joel D. Blum, Marcus Christl, Peter W. Kubik, and Friedhelm von Blanckenburg
Geochronology, 2, 411–423, https://doi.org/10.5194/gchron-2-411-2020, https://doi.org/10.5194/gchron-2-411-2020, 2020
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Meteoric beryllium-10 concentrations in soil profiles have great capacity to quantify Earth surface processes, such as erosion rates and landform ages. However, determining these requires an accurate estimate of the delivery rate of this isotope to local sites. Here, we present a new method to constrain the long-term delivery rate to an eroding western US site, compare it against existing delivery rate estimates (revealing considerable disagreement between methods), and suggest best practices.
Florian Wilken, Michael Ketterer, Sylvia Koszinski, Michael Sommer, and Peter Fiener
SOIL, 6, 549–564, https://doi.org/10.5194/soil-6-549-2020, https://doi.org/10.5194/soil-6-549-2020, 2020
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Soil redistribution by water and tillage erosion processes on arable land is a major threat to sustainable use of soil resources. We unravel the role of tillage and water erosion from fallout radionuclide (239+240Pu) activities in a ground moraine landscape. Our results show that tillage erosion dominates soil redistribution processes and has a major impact on the hydrological and sedimentological connectivity, which started before the onset of highly mechanised farming since the 1960s.
Ralf A. Oeser and Friedhelm von Blanckenburg
Biogeosciences, 17, 4883–4917, https://doi.org/10.5194/bg-17-4883-2020, https://doi.org/10.5194/bg-17-4883-2020, 2020
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We present a novel strategy to decipher the relative impact of biogenic and abiotic drivers of weathering. We parameterized the nutrient fluxes in four ecosystems along a climate and vegetation gradient situated on the Chilean Coastal Cordillera. We investigated how nutrient demand by plants drives weathering. We found that the increase in biomass nutrient demand is accommodated by faster nutrient recycling rather than an increase in the weathering–release rates.
W. Marijn van der Meij, Arnaud J. A. M. Temme, Jakob Wallinga, and Michael Sommer
SOIL, 6, 337–358, https://doi.org/10.5194/soil-6-337-2020, https://doi.org/10.5194/soil-6-337-2020, 2020
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We developed a model to simulate long-term development of soils and landscapes under varying rainfall and land-use conditions to quantify the temporal variation of soil patterns. In natural landscapes, rainfall amount was the dominant factor influencing soil variation, while for agricultural landscapes, landscape position became the dominant factor due to tillage erosion. Our model shows potential for simulating past and future developments of soils in various landscapes and climates.
Chris R. Flechard, Andreas Ibrom, Ute M. Skiba, Wim de Vries, Marcel van Oijen, David R. Cameron, Nancy B. Dise, Janne F. J. Korhonen, Nina Buchmann, Arnaud Legout, David Simpson, Maria J. Sanz, Marc Aubinet, Denis Loustau, Leonardo Montagnani, Johan Neirynck, Ivan A. Janssens, Mari Pihlatie, Ralf Kiese, Jan Siemens, André-Jean Francez, Jürgen Augustin, Andrej Varlagin, Janusz Olejnik, Radosław Juszczak, Mika Aurela, Daniel Berveiller, Bogdan H. Chojnicki, Ulrich Dämmgen, Nicolas Delpierre, Vesna Djuricic, Julia Drewer, Eric Dufrêne, Werner Eugster, Yannick Fauvel, David Fowler, Arnoud Frumau, André Granier, Patrick Gross, Yannick Hamon, Carole Helfter, Arjan Hensen, László Horváth, Barbara Kitzler, Bart Kruijt, Werner L. Kutsch, Raquel Lobo-do-Vale, Annalea Lohila, Bernard Longdoz, Michal V. Marek, Giorgio Matteucci, Marta Mitosinkova, Virginie Moreaux, Albrecht Neftel, Jean-Marc Ourcival, Kim Pilegaard, Gabriel Pita, Francisco Sanz, Jan K. Schjoerring, Maria-Teresa Sebastià, Y. Sim Tang, Hilde Uggerud, Marek Urbaniak, Netty van Dijk, Timo Vesala, Sonja Vidic, Caroline Vincke, Tamás Weidinger, Sophie Zechmeister-Boltenstern, Klaus Butterbach-Bahl, Eiko Nemitz, and Mark A. Sutton
Biogeosciences, 17, 1583–1620, https://doi.org/10.5194/bg-17-1583-2020, https://doi.org/10.5194/bg-17-1583-2020, 2020
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Experimental evidence from a network of 40 monitoring sites in Europe suggests that atmospheric nitrogen deposition to forests and other semi-natural vegetation impacts the carbon sequestration rates in ecosystems, as well as the net greenhouse gas balance including other greenhouse gases such as nitrous oxide and methane. Excess nitrogen deposition in polluted areas also leads to other environmental impacts such as nitrogen leaching to groundwater and other pollutant gaseous emissions.
Jannis Groh, Jan Vanderborght, Thomas Pütz, Hans-Jörg Vogel, Ralf Gründling, Holger Rupp, Mehdi Rahmati, Michael Sommer, Harry Vereecken, and Horst H. Gerke
Hydrol. Earth Syst. Sci., 24, 1211–1225, https://doi.org/10.5194/hess-24-1211-2020, https://doi.org/10.5194/hess-24-1211-2020, 2020
Renee van Dongen, Dirk Scherler, Hella Wittmann, and Friedhelm von Blanckenburg
Earth Surf. Dynam., 7, 393–410, https://doi.org/10.5194/esurf-7-393-2019, https://doi.org/10.5194/esurf-7-393-2019, 2019
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The concentration of cosmogenic 10Be is typically measured in the sand fraction of river sediment to estimate catchment-average erosion rates. Using the sand fraction in catchments where the 10Be concentrations differ per grain size could potentially result in biased erosion rates. In this study we investigated the occurrence and causes of grain size-dependent 10Be concentrations and identified the types of catchments which are sensitive to biased catchment-average erosion rates.
Daniel Puppe, Axel Höhn, Danuta Kaczorek, Manfred Wanner, Marc Wehrhan, and Michael Sommer
Biogeosciences, 14, 5239–5252, https://doi.org/10.5194/bg-14-5239-2017, https://doi.org/10.5194/bg-14-5239-2017, 2017
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We quantified different biogenic Si pools in soils of a developing ecosystem and analyzed their influence on short-term changes of the water soluble Si fraction. From our results we concluded small (< 5 µm) and/or fragile phytogenic Si structures to have the biggest impact on short-term changes of water soluble Si. Analyses of these phytogenic Si structures are urgently needed in future as they seem to represent the most important driver of Si cycling in terrestrial biogeosystems in general.
Sebastian Rainer Fiedler, Jürgen Augustin, Nicole Wrage-Mönnig, Gerald Jurasinski, Bertram Gusovius, and Stephan Glatzel
SOIL, 3, 161–176, https://doi.org/10.5194/soil-3-161-2017, https://doi.org/10.5194/soil-3-161-2017, 2017
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Injection of biogas digestates (BDs) is suspected to increase losses of N2O and thus to counterbalance prevented NH3 emissions. We determined N2O and N2 losses after mixing high concentrations of BD into two soils by an incubation under an artificial helium–oxygen atmosphere. Emissions did not increase with the application rate of BD, probably due to an inhibitory effect of the high NH4+ content in BD on nitrification. However, cumulated gaseous N losses may effectively offset NH3 reductions.
Mathias Hoffmann, Nicole Jurisch, Juana Garcia Alba, Elisa Albiac Borraz, Marten Schmidt, Vytas Huth, Helmut Rogasik, Helene Rieckh, Gernot Verch, Michael Sommer, and Jürgen Augustin
Biogeosciences, 14, 1003–1019, https://doi.org/10.5194/bg-14-1003-2017, https://doi.org/10.5194/bg-14-1003-2017, 2017
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We present a suitable and reliable method to detect short-term and small-scale soil organic carbon stock dynamics (ΔSOC). Spatiotemporal dynamics of ΔSOC are determined for a 5-year study period at the experimental field trial
CarboZALFusing automatic chamber measurements of NEE and modeled NPPshoot. Results were compared against ΔSOC observed from repeated soil inventories. Both ∆SOC data sets corresponded well regarding their magnitude and spatial tendency.
Dominika Lewicka-Szczebak, Jürgen Augustin, Anette Giesemann, and Reinhard Well
Biogeosciences, 14, 711–732, https://doi.org/10.5194/bg-14-711-2017, https://doi.org/10.5194/bg-14-711-2017, 2017
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The consumption of the greenhouse gas nitrous oxide (N2O) by its reduction to dinitrogen via microbial denitrification in soil is poorly quantified. This precludes improvements in nitrogen (N) efficiency in agricultural ecosystems and mitigation of N losses to the environment including N2O fluxes. We present a laboratory evaluation for the determination of N2O reduction based on stable isotope values of soil-emitted N2O as a new approach to determine N2O reduction in the field studies.
Mathias Hoffmann, Maximilian Schulz-Hanke, Juana Garcia Alba, Nicole Jurisch, Ulrike Hagemann, Torsten Sachs, Michael Sommer, and Jürgen Augustin
Atmos. Meas. Tech., 10, 109–118, https://doi.org/10.5194/amt-10-109-2017, https://doi.org/10.5194/amt-10-109-2017, 2017
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Processes driving production and transport of CH4 in wetlands are complex. We present an algorithm to separate open-water automatic chamber CH4 fluxes into diffusion and ebullition. This helps to reveal dynamics, identify drivers and obtain reliable CH4 emissions. The algorithm is based on sudden concentration changes during single measurements. A variable filter is applied using a multiple of the interquartile range. The algorithm was verified for data of a rewetted former fen grassland site.
Jean L. Dixon, Friedhelm von Blanckenburg, Kurt Stüwe, and Marcus Christl
Earth Surf. Dynam., 4, 895–909, https://doi.org/10.5194/esurf-4-895-2016, https://doi.org/10.5194/esurf-4-895-2016, 2016
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We quantify the glacial legacy of Holocene erosion at the eastern edge of the European Alps and add insight to the debate on drivers of Alpine erosion. We present the first data explicitly comparing 10Be-based erosion rates in previously glaciated and non-glaciated basins (n = 26). Erosion rates vary 5-fold across the region, correlating with local topography and glacial history. Our approach and unique study site allow us to isolate the role of glacial topographic legacies from other controls.
Merten Minke, Jürgen Augustin, Andrei Burlo, Tatsiana Yarmashuk, Hanna Chuvashova, Annett Thiele, Annette Freibauer, Vitalij Tikhonov, and Mathias Hoffmann
Biogeosciences, 13, 3945–3970, https://doi.org/10.5194/bg-13-3945-2016, https://doi.org/10.5194/bg-13-3945-2016, 2016
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We studied GHG emissions along water-level gradients of two inundated cutover fens with closed chambers. N2O fluxes were negligible. CO2 and CH4 fluxes were controlled by vegetation composition and plant productivity, which in turn depended on water level and nutrient conditions. CH4 fluxes from mesotrophic sites were low and largely compensated for by CO2 uptake. Eutrophic sites were strong CH4 sources, and GHG balances depended on the plant's net C sink, which strongly differed between species.
W. Marijn van der Meij, Arnaud J. A. M. Temme, Christian M. F. J. J. de Kleijn, Tony Reimann, Gerard B. M. Heuvelink, Zbigniew Zwoliński, Grzegorz Rachlewicz, Krzysztof Rymer, and Michael Sommer
SOIL, 2, 221–240, https://doi.org/10.5194/soil-2-221-2016, https://doi.org/10.5194/soil-2-221-2016, 2016
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This study combined fieldwork, geochronology and modelling to get a better understanding of Arctic soil development on a landscape scale. Main processes are aeolian deposition, physical and chemical weathering and silt translocation. Discrepancies between model results and field observations showed that soil and landscape development is not as straightforward as we hypothesized. Interactions between landscape processes and soil processes have resulted in a complex soil pattern in the landscape.
Daniela Franz, Franziska Koebsch, Eric Larmanou, Jürgen Augustin, and Torsten Sachs
Biogeosciences, 13, 3051–3070, https://doi.org/10.5194/bg-13-3051-2016, https://doi.org/10.5194/bg-13-3051-2016, 2016
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Based on the eddy covariance method we investigate the ecosystem–atmosphere exchange of CH4 and CO2 at a eutrophic shallow lake as a challenging ecosystem often evolving during peatland rewetting. Both open water and emergent vegetation are net emitters of CH4 and CO2, but with strikingly different release rates. Even after 9 years of rewetting the lake ecosystem exhibits a considerable carbon loss and global warming impact, the latter mainly driven by high CH4 emissions from the open waterbody.
Dominika Lewicka-Szczebak, Jens Dyckmans, Jan Kaiser, Alina Marca, Jürgen Augustin, and Reinhard Well
Biogeosciences, 13, 1129–1144, https://doi.org/10.5194/bg-13-1129-2016, https://doi.org/10.5194/bg-13-1129-2016, 2016
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Oxygen isotopic signatures of N2O are formed in complex multistep enzymatic reactions and depend on isotopic fractionation during enzymatic reduction of nitrate to N2O and on the oxygen isotope exchange with soil water. We propose a new method for quantification of oxygen isotope exchange, with simultaneous determination of oxygen isotopic signatures, to decipher the mechanism of oxygen isotopic fractionation. We indicate the differences between fractionation mechanisms by various pathways.
M. Hoffmann, M. Schulz-Hanke, J. Garcia Alba, N. Jurisch, U. Hagemann, T. Sachs, M. Sommer, and J. Augustin
Biogeosciences Discuss., https://doi.org/10.5194/bgd-12-12923-2015, https://doi.org/10.5194/bgd-12-12923-2015, 2015
Manuscript not accepted for further review
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Processes driving the production, transformation and transport of CH4 in wetlands are highly complex. Thus, serious challenges are constitutes in terms of process understanding, potential drivers and the calculation of reliable CH4 emission estimates. We present a simple calculation algorithm to separate CH4 fluxes measured with closed chambers into diffusion- and ebullition-derived components, which helps facilitating the identification of underlying dynamics and potential drivers.
M. Pohl, M. Hoffmann, U. Hagemann, M. Giebels, E. Albiac Borraz, M. Sommer, and J. Augustin
Biogeosciences, 12, 2737–2752, https://doi.org/10.5194/bg-12-2737-2015, https://doi.org/10.5194/bg-12-2737-2015, 2015
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Dynamic SOC and N stocks in the aerobic zone play a key role in the regulation of plant- and microbially mediated CO2 and CH4 fluxes in drained and cultivated fen peatlands. Their interaction with the groundwater level (GWL) strongly influenced soil C gas exchange, indicating effects of GWL-dependent N availability on C formation and transformation processes in the plant--soil system. In contrast, static SOC and N stocks showed no significant effect on C gas fluxes.
D. Zak, H. Reuter, J. Augustin, T. Shatwell, M. Barth, J. Gelbrecht, and R. J. McInnes
Biogeosciences, 12, 2455–2468, https://doi.org/10.5194/bg-12-2455-2015, https://doi.org/10.5194/bg-12-2455-2015, 2015
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In this paper, the CO2 and CH4 production due to the subaqueous decomposition of the five most abundant plant species, which are considered to be representative of different rewetting stages, will be presented. Beside continuous gas flux measurements, bulk chemical analyses of plant tissue were performed to gain insights into changing litter characteristics. With respect to temporal vegetation shifts in rewetted fens, the results provide new insights into the climate effect of these ecosystems.
B. A. Miller, S. Koszinski, M. Wehrhan, and M. Sommer
SOIL, 1, 217–233, https://doi.org/10.5194/soil-1-217-2015, https://doi.org/10.5194/soil-1-217-2015, 2015
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There are many different strategies for mapping SOC, among which is to model the variables needed to calculate the SOC stock indirectly or to model the SOC stock directly. The purpose of this research was to compare these two approaches for mapping SOC stocks from multiple linear regression models applied at the landscape scale via spatial association. Although the indirect approach had greater spatial variation and higher R2 values, the direct approach had a lower total estimated error.
T. Leppelt, R. Dechow, S. Gebbert, A. Freibauer, A. Lohila, J. Augustin, M. Drösler, S. Fiedler, S. Glatzel, H. Höper, J. Järveoja, P. E. Lærke, M. Maljanen, Ü. Mander, P. Mäkiranta, K. Minkkinen, P. Ojanen, K. Regina, and M. Strömgren
Biogeosciences, 11, 6595–6612, https://doi.org/10.5194/bg-11-6595-2014, https://doi.org/10.5194/bg-11-6595-2014, 2014
T. Eickenscheidt, A. Freibauer, J. Heinichen, J. Augustin, and M. Drösler
Biogeosciences, 11, 6187–6207, https://doi.org/10.5194/bg-11-6187-2014, https://doi.org/10.5194/bg-11-6187-2014, 2014
S. Emmanuel, J. A. Schuessler, J. Vinther, A. Matthews, and F. von Blanckenburg
Biogeosciences, 11, 5493–5502, https://doi.org/10.5194/bg-11-5493-2014, https://doi.org/10.5194/bg-11-5493-2014, 2014
J. Leifeld, C. Bader, E. Borraz, M. Hoffmann, M. Giebels, M. Sommer, and J. Augustin
Biogeosciences Discuss., https://doi.org/10.5194/bgd-11-12341-2014, https://doi.org/10.5194/bgd-11-12341-2014, 2014
Revised manuscript not accepted
T. Eickenscheidt, J. Heinichen, J. Augustin, A. Freibauer, and M. Drösler
Biogeosciences, 11, 2961–2976, https://doi.org/10.5194/bg-11-2961-2014, https://doi.org/10.5194/bg-11-2961-2014, 2014
M. Sommer, H. Jochheim, A. Höhn, J. Breuer, Z. Zagorski, J. Busse, D. Barkusky, K. Meier, D. Puppe, M. Wanner, and D. Kaczorek
Biogeosciences, 10, 4991–5007, https://doi.org/10.5194/bg-10-4991-2013, https://doi.org/10.5194/bg-10-4991-2013, 2013
R. M. Rees, J. Augustin, G. Alberti, B. C. Ball, P. Boeckx, A. Cantarel, S. Castaldi, N. Chirinda, B. Chojnicki, M. Giebels, H. Gordon, B. Grosz, L. Horvath, R. Juszczak, Å. Kasimir Klemedtsson, L. Klemedtsson, S. Medinets, A. Machon, F. Mapanda, J. Nyamangara, J. E. Olesen, D. S. Reay, L. Sanchez, A. Sanz Cobena, K. A. Smith, A. Sowerby, M. Sommer, J. F. Soussana, M. Stenberg, C. F. E. Topp, O. van Cleemput, A. Vallejo, C. A. Watson, and M. Wuta
Biogeosciences, 10, 2671–2682, https://doi.org/10.5194/bg-10-2671-2013, https://doi.org/10.5194/bg-10-2671-2013, 2013
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Leaf-scale quantification of the effect of photosynthetic gas exchange on Δ17O of atmospheric CO2
The stable carbon isotope signature of methane produced by saprotrophic fungi
Understanding the effects of early degradation on isotopic tracers: implications for sediment source attribution using compound-specific isotope analysis (CSIA)
Oxygen isotope composition of waters recorded in carbonates in strong clumped and oxygen isotopic disequilibrium
Isotopic evidence for alteration of nitrous oxide emissions and producing pathways' contribution under nitrifying conditions
Trace element composition of size-fractionated suspended particulate matter samples from the Qatari Exclusive Economic Zone of the Arabian Gulf: the role of atmospheric dust
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
EGUsphere, https://doi.org/10.5194/egusphere-2023-2833, https://doi.org/10.5194/egusphere-2023-2833, 2023
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The ratio between atmospheric O2 and CO2 can be used to characterise the carbon balance of the surface. By combining a model and observations from the Hyytiala forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange, because large scale processes such as entrainment confound this signal. We therefore recommend to always use multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Eliza Jean Harris, Philipp Fischer, Maciej P. Lewicki, Dominika Lewicka-Szczebak, Stephen J. Harris, and Fernando Perez-Cruz
EGUsphere, https://doi.org/10.5194/egusphere-2023-2836, https://doi.org/10.5194/egusphere-2023-2836, 2023
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Greenhouse gases are produced and consumed via a number of pathways. Quantifying these pathways helps reduce the climate and environmental footprint of anthropogenic activities. The contribution of different pathways can be estimated from the isotopic composition, which acts as a "fingerprint" for these pathways. Interpreting this data is challenging. We have developed the TimeFRAME model to simplify interpretation, and estimate the contribution of different pathways and their uncertainty.
Nestor Gaviria-Lugo, Charlotte Läuchli, Hella Wittmann, Anne Bernhardt, Patrick Frings, Mahyar Mohtadi, Oliver Rach, and Dirk Sachse
Biogeosciences, 20, 4433–4453, https://doi.org/10.5194/bg-20-4433-2023, https://doi.org/10.5194/bg-20-4433-2023, 2023
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We analyzed how leaf wax hydrogen isotopes in continental and marine sediments respond to climate along one of the strongest aridity gradients in the world, from hyperarid to humid, along Chile. We found that under extreme aridity, the relationship between hydrogen isotopes in waxes and climate is non-linear, suggesting that we should be careful when reconstructing past hydrological changes using leaf wax hydrogen isotopes so as to avoid overestimating how much the climate has changed.
Ralf Conrad and Peter Claus
Biogeosciences, 20, 3625–3635, https://doi.org/10.5194/bg-20-3625-2023, https://doi.org/10.5194/bg-20-3625-2023, 2023
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Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Propionate is an important intermediate. In the presence of sulfate, it was degraded by Syntrophobacter species via acetate to CO2. In the absence of sulfate, it was mainly consumed by Smithella and methanogenic archaeal species via butyrate and acetate to CH4. However, stable carbon isotope fractionation during the degradation process was quite small.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
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Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Joel T. Bostic, David M. Nelson, and Keith N. Eshleman
Biogeosciences, 20, 2485–2498, https://doi.org/10.5194/bg-20-2485-2023, https://doi.org/10.5194/bg-20-2485-2023, 2023
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Land-use changes can affect water quality. We used tracers of pollution sources and water flow paths to show that an urban watershed exports variable sources during storm events relative to a less developed watershed. Our results imply that changing precipitation patterns combined with increasing urbanization may alter sources of pollution in the future.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2405–2424, https://doi.org/10.5194/bg-20-2405-2023, https://doi.org/10.5194/bg-20-2405-2023, 2023
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Dissolved organic carbon (DOC) is a reservoir of prime importance in the C cycle of both continental and marine systems. It has also been suggested to influence the past Earth climate but is still poorly characterized in ancient-Earth-like environments. In this paper we show how DOC analyses from modern redox-stratified lakes can evidence specific metabolic reactions and environmental factors and how these can help us to interpret the C cycle of specific periods in the Earth's past.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2347–2367, https://doi.org/10.5194/bg-20-2347-2023, https://doi.org/10.5194/bg-20-2347-2023, 2023
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We describe the C cycle of four modern stratified water bodies from Mexico, a necessary step to better understand the C cycle of primitive-Earth-like environments, which were dominated by these kinds of conditions. We highlight the importance of local external factors on the C cycle of these systems. Notably, they influence the sensitivity of the carbonate record to environmental changes. We also show the strong C-cycle variability among these lakes and their organic C sediment record.
Yifan Ma, Kuanbo Zhou, Weifang Chen, Junhui Chen, Jin-Yu Terence Yang, and Minhan Dai
Biogeosciences, 20, 2013–2030, https://doi.org/10.5194/bg-20-2013-2023, https://doi.org/10.5194/bg-20-2013-2023, 2023
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We distinguished particulate organic carbon (POC) export fluxes out of the nutrient-depleted layer (NDL) and the euphotic zone. The amount of POC export flux at the NDL base suggests that the NDL could be a hotspot of particle export. The substantial POC export flux at the NDL base challenges traditional concepts that the NDL was limited in terms of POC export. The dominant nutrient source for POC export fluxes should be subsurface nutrients, which was determined by 15N isotopic mass balance.
Clémence Paul, Clément Piel, Joana Sauze, Nicolas Pasquier, Frédéric Prié, Sébastien Devidal, Roxanne Jacob, Arnaud Dapoigny, Olivier Jossoud, Alexandru Milcu, and Amaëlle Landais
Biogeosciences, 20, 1047–1062, https://doi.org/10.5194/bg-20-1047-2023, https://doi.org/10.5194/bg-20-1047-2023, 2023
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To improve the interpretation of the δ18Oatm and Δ17O of O2 in air bubbles in ice cores, we need to better quantify the oxygen fractionation coefficients associated with biological processes. We performed a simplified analogue of the terrestrial biosphere in a closed chamber. We found a respiration fractionation in agreement with the previous estimates at the microorganism scale, and a terrestrial photosynthetic fractionation was found. This has an impact on the estimation of the Dole effect.
Adam Francis, Raja S. Ganeshram, Robyn E. Tuerena, Robert G. M. Spencer, Robert M. Holmes, Jennifer A. Rogers, and Claire Mahaffey
Biogeosciences, 20, 365–382, https://doi.org/10.5194/bg-20-365-2023, https://doi.org/10.5194/bg-20-365-2023, 2023
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Climate change is causing extensive permafrost degradation and nutrient releases into rivers with great ecological impacts on the Arctic Ocean. We focused on nitrogen (N) release from this degradation and associated cycling using N isotopes, an understudied area. Many N species are released at degradation sites with exchanges between species. N inputs from permafrost degradation and seasonal river N trends were identified using isotopes, helping to predict climate change impacts.
Mohamed Ayache, Jean-Claude Dutay, Kazuyo Tachikawa, Thomas Arsouze, and Catherine Jeandel
Biogeosciences, 20, 205–227, https://doi.org/10.5194/bg-20-205-2023, https://doi.org/10.5194/bg-20-205-2023, 2023
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The neodymium (Nd) is one of the most useful tracers to fingerprint water mass provenance. However, the use of Nd is hampered by the lack of adequate quantification of the external sources. Here, we present the first simulation of dissolved Nd concentration and Nd isotopic composition in the Mediterranean Sea using a high-resolution model. We aim to better understand how the various external sources affect the Nd cycle and particularly assess how it is impacted by atmospheric inputs.
Marta Santos-Garcia, Raja S. Ganeshram, Robyn E. Tuerena, Margot C. F. Debyser, Katrine Husum, Philipp Assmy, and Haakon Hop
Biogeosciences, 19, 5973–6002, https://doi.org/10.5194/bg-19-5973-2022, https://doi.org/10.5194/bg-19-5973-2022, 2022
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Terrestrial sources of nitrate are important contributors to the nutrient pool in the fjords of Kongsfjorden and Rijpfjorden in Svalbard during the summer, and they sustain most of the fjord primary productivity. Ongoing tidewater glacier retreat is postulated to favour light limitation and less dynamic circulation in fjords. This is suggested to encourage the export of nutrients to the middle and outer part of the fjord system, which may enhance primary production within and in offshore areas.
Marlene Dordoni, Michael Seewald, Karsten Rinke, Kurt Friese, Robert van Geldern, Jakob Schmidmeier, and Johannes A. C. Barth
Biogeosciences, 19, 5343–5355, https://doi.org/10.5194/bg-19-5343-2022, https://doi.org/10.5194/bg-19-5343-2022, 2022
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Organic matter (OM) turnover into dissolved inorganic carbon (DIC) was investigated by means of carbon isotope mass balances in Germany's largest water reservoir. This includes a metalimnetic oxygen minimum (MOM). Autochthonous particulate organic carbon (POC) was the main contributor to DIC, with rates that were highest for the MOM. Generally low turnover rates outline the environmental fragility of this water body in the case that OM loads increase due to storm events or land use changes.
Frédérique M. S. A. Kirkels, Hugo J. de Boer, Paulina Concha Hernández, Chris R. T. Martes, Marcel T. J. van der Meer, Sayak Basu, Muhammed O. Usman, and Francien Peterse
Biogeosciences, 19, 4107–4127, https://doi.org/10.5194/bg-19-4107-2022, https://doi.org/10.5194/bg-19-4107-2022, 2022
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The distinct carbon isotopic values of C3 and C4 plants are widely used to reconstruct past hydroclimate, where more C3 plants reflect wetter and C4 plants drier conditions. Here we examine the impact of regional hydroclimatic conditions on plant isotopic values in the Godavari River basin, India. We find that it is crucial to identify regional plant isotopic values and consider drought stress, which introduces a bias in C3 / C4 plant estimates and associated hydroclimate reconstructions.
Mhlangabezi Mdutyana, Tanya Marshall, Xin Sun, Jessica M. Burger, Sandy J. Thomalla, Bess B. Ward, and Sarah E. Fawcett
Biogeosciences, 19, 3425–3444, https://doi.org/10.5194/bg-19-3425-2022, https://doi.org/10.5194/bg-19-3425-2022, 2022
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Nitrite-oxidizing bacteria in the winter Southern Ocean show a high affinity for nitrite but require a minimum (i.e., "threshold") concentration before they increase their rates of nitrite oxidation significantly. The classic Michaelis–Menten model thus cannot be used to derive the kinetic parameters, so a modified equation was employed that also yields the threshold nitrite concentration. Dissolved iron availability may play an important role in limiting nitrite oxidation.
Weitian Ding, Urumu Tsunogai, Fumiko Nakagawa, Takashi Sambuichi, Hiroyuki Sase, Masayuki Morohashi, and Hiroki Yotsuyanagi
Biogeosciences, 19, 3247–3261, https://doi.org/10.5194/bg-19-3247-2022, https://doi.org/10.5194/bg-19-3247-2022, 2022
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Excessive leaching of nitrate from forested catchments during storm events degrades water quality and causes eutrophication in downstream areas. Thus, tracing the source of nitrate increase during storm events in forested streams is important for sustainable forest management. Based on the isotopic compositions of stream nitrate, including Δ17O, this study clarifies that the source of stream nitrate increase during storm events was soil nitrate in the riparian zone.
Nicolas Séon, Romain Amiot, Guillaume Suan, Christophe Lécuyer, François Fourel, Fabien Demaret, Arnauld Vinçon-Laugier, Sylvain Charbonnier, and Peggy Vincent
Biogeosciences, 19, 2671–2681, https://doi.org/10.5194/bg-19-2671-2022, https://doi.org/10.5194/bg-19-2671-2022, 2022
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We analysed the oxygen isotope composition of bones and teeth of four marine species possessing regional heterothermies. We observed a consistent link between oxygen isotope composition and temperature heterogeneities recorded by classical methods. This opens up new perspectives on the determination of the thermoregulatory strategies of extant marine vertebrates where conventional methods are difficult to apply, but also allows us to investigate thermophysiologies of extinct vertebrates.
Yuwei Liu, Guofeng Zhu, Zhuanxia Zhang, Zhigang Sun, Leilei Yong, Liyuan Sang, Lei Wang, and Kailiang Zhao
Biogeosciences, 19, 877–889, https://doi.org/10.5194/bg-19-877-2022, https://doi.org/10.5194/bg-19-877-2022, 2022
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We took the water cycle process of soil–plant–atmospheric precipitation as the research objective. In the water cycle of soil–plant–atmospheric precipitation, precipitation plays the main controlling role. The main source of replenishment for alpine meadow plants is precipitation and alpine meltwater; the main source of replenishment for forest plants is soil water; and the plants in the arid foothills mainly use groundwater.
Roberto Velázquez-Ochoa, María Julia Ochoa-Izaguirre, and Martín Federico Soto-Jiménez
Biogeosciences, 19, 1–27, https://doi.org/10.5194/bg-19-1-2022, https://doi.org/10.5194/bg-19-1-2022, 2022
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Our research is the first approximation to understand the δ13C macroalgal variability in one of the most diverse marine ecosystems in the world, the Gulf of California. The life-form is the principal cause of δ13C macroalgal variability, mainly taxonomy. However, changes in habitat characteristics and environmental conditions also influence the δ13C macroalgal variability. The δ13C macroalgae is indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation.
Raquel F. Flynn, Thomas G. Bornman, Jessica M. Burger, Shantelle Smith, Kurt A. M. Spence, and Sarah E. Fawcett
Biogeosciences, 18, 6031–6059, https://doi.org/10.5194/bg-18-6031-2021, https://doi.org/10.5194/bg-18-6031-2021, 2021
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Biological activity in the shallow Weddell Sea affects the biogeochemistry of recently formed deep waters. To investigate the drivers of carbon and nutrient export, we measured rates of primary production and nitrogen uptake, characterized the phytoplankton community, and estimated nutrient depletion ratios across the under-sampled western Weddell Sea in mid-summer. Carbon export was highest at the ice shelves and was determined by a combination of physical, chemical, and biological factors.
Stéphanie H. M. Jacquet, Christian Tamburini, Marc Garel, Aurélie Dufour, France Van Vambeke, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 5891–5902, https://doi.org/10.5194/bg-18-5891-2021, https://doi.org/10.5194/bg-18-5891-2021, 2021
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We compared carbon remineralization rates (MRs) in the western and central Mediterranean Sea in late spring during the PEACETIME cruise, as assessed using the barium tracer. We reported higher and deeper (up to 1000 m depth) MRs in the western basin, potentially sustained by an additional particle export event driven by deep convection. The central basin is the site of a mosaic of blooming and non-blooming water masses and showed lower MRs that were restricted to the upper mesopelagic layer.
Shinsuke Kawagucci, Yohei Matsui, Akiko Makabe, Tatsuhiro Fukuba, Yuji Onishi, Takuro Nunoura, and Taichi Yokokawa
Biogeosciences, 18, 5351–5362, https://doi.org/10.5194/bg-18-5351-2021, https://doi.org/10.5194/bg-18-5351-2021, 2021
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Hydrogen and carbon isotope ratios of methane as well as the relevant biogeochemical parameters and microbial community compositions in hydrothermal plumes in the Okinawa Trough were observed. We succeeded in simultaneously determining hydrogen and carbon isotope fractionation factors associated with aerobic oxidation of methane in seawater (εH = 49.4 ± 5.0 ‰, εC = 5.2 ± 0.4 ‰) – the former being the first of its kind ever reported.
Nicolai Schleinkofer, David Evans, Max Wisshak, Janina Vanessa Büscher, Jens Fiebig, André Freiwald, Sven Härter, Horst R. Marschall, Silke Voigt, and Jacek Raddatz
Biogeosciences, 18, 4733–4753, https://doi.org/10.5194/bg-18-4733-2021, https://doi.org/10.5194/bg-18-4733-2021, 2021
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We have measured the chemical composition of the carbonate shells of the parasitic foraminifera Hyrrokkin sarcophaga in order to test if it is influenced by the host organism (bivalve or coral). We find that both the chemical and isotopic composition is influenced by the host organism. For example strontium is enriched in foraminifera that grew on corals, whose skeleton is built from aragonite, which is naturally enriched in strontium compared to the bivalves' calcite shell.
Lena Rohe, Traute-Heidi Anderson, Heinz Flessa, Anette Goeske, Dominika Lewicka-Szczebak, Nicole Wrage-Mönnig, and Reinhard Well
Biogeosciences, 18, 4629–4650, https://doi.org/10.5194/bg-18-4629-2021, https://doi.org/10.5194/bg-18-4629-2021, 2021
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This is the first experimental setup combining a complex set of methods (microbial inhibitors and isotopic approaches) to differentiate between N2O produced by fungi or bacteria during denitrification in three soils. Quantifying the fungal fraction with inhibitors was not successful due to large amounts of uninhibited N2O production. All successful methods suggested a small or missing fungal contribution. Artefacts occurring with microbial inhibition to determine N2O fluxes are discussed.
Inga Köhler, Raul E. Martinez, David Piatka, Achim J. Herrmann, Arianna Gallo, Michelle M. Gehringer, and Johannes A. C. Barth
Biogeosciences, 18, 4535–4548, https://doi.org/10.5194/bg-18-4535-2021, https://doi.org/10.5194/bg-18-4535-2021, 2021
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We investigated how high Fe(II) levels influence the O2 budget of a circum-neutral Fe(II)-rich spring and if a combined study of dissolved O (DO) and its isotopic composition can help assess this effect. We showed that dissolved Fe(II) can exert strong effects on the δ18ODO even though a constant supply of atmospheric O2 occurs. In the presence of photosynthesis, direct effects of Fe oxidation become masked. Critical Fe(II) concentrations indirectly control the DO by enhancing photosynthesis.
Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast
Biogeosciences, 18, 4491–4510, https://doi.org/10.5194/bg-18-4491-2021, https://doi.org/10.5194/bg-18-4491-2021, 2021
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Pacific water flowing eastward through the Canadian Arctic plays an important role in redistributing nutrients to the northwest Atlantic Ocean. Using samples collected from northern Baffin Bay to the southern Labrador Shelf, we show that stable isotopic ratios in seawater nitrate reflect the fraction of Pacific to Atlantic water. These results provide a new framework for interpreting patterns of nitrogen isotopic variability recorded in modern and archival organic materials in the region.
Franziska Slotta, Lukas Wacker, Frank Riedel, Karl-Uwe Heußner, Kai Hartmann, and Gerhard Helle
Biogeosciences, 18, 3539–3564, https://doi.org/10.5194/bg-18-3539-2021, https://doi.org/10.5194/bg-18-3539-2021, 2021
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The African baobab is a challenging climate and environmental archive for its semi-arid habitat due to dating uncertainties and parenchyma-rich wood anatomy. Annually resolved F14C data of tree-ring cellulose (1941–2005) from a tree in Oman show the annual character of the baobab’s growth rings but were up to 8.8 % lower than expected for 1964–1967. Subseasonal δ13C and δ18O patterns reveal years with low average monsoon rain as well as heavy rainfall events from pre-monsoonal cyclones.
Peter M. J. Douglas, Emerald Stratigopoulos, Sanga Park, and Dawson Phan
Biogeosciences, 18, 3505–3527, https://doi.org/10.5194/bg-18-3505-2021, https://doi.org/10.5194/bg-18-3505-2021, 2021
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Hydrogen isotopes could be a useful tool to help resolve the geographic distribution of methane emissions from freshwater environments. We analyzed an expanded global dataset of freshwater methane hydrogen isotope ratios and found significant geographic variation linked to water isotopic composition. This geographic variability could be used to resolve changing methane fluxes from freshwater environments and provide more accurate estimates of the relative balance of global methane sources.
Veronica R. Rollinson, Julie Granger, Sydney C. Clark, Mackenzie L. Blanusa, Claudia P. Koerting, Jamie M. P. Vaudrey, Lija A. Treibergs, Holly C. Westbrook, Catherine M. Matassa, Meredith G. Hastings, and Craig R. Tobias
Biogeosciences, 18, 3421–3444, https://doi.org/10.5194/bg-18-3421-2021, https://doi.org/10.5194/bg-18-3421-2021, 2021
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We measured nutrients and the naturally occurring nitrogen (N) and oxygen (O) stable isotope ratios of nitrate discharged from a New England river over an annual cycle, to monitor N loading and identify dominant sources from the watershed. We uncovered a seasonality to loading and sources of N from the watershed. Seasonality in the nitrate isotope ratios also informed on N cycling, conforming to theoretical expectations of riverine nutrient cycling.
Zixun Chen, Xuejun Liu, Xiaoqing Cui, Yaowen Han, Guoan Wang, and Jiazhu Li
Biogeosciences, 18, 2859–2870, https://doi.org/10.5194/bg-18-2859-2021, https://doi.org/10.5194/bg-18-2859-2021, 2021
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δ13C in plants is a sensitive long-term indicator of physiological acclimatization. The present study suggests that precipitation change and increasing atmospheric N deposition have little impact on δ13C of H. ammodendron, a dominant plant in central Asian deserts, but affect its gas exchange. In addition, this study shows that δ13C of H. ammodendron could not indicate its water use efficiency (WUE), suggesting that whether δ13C of C4 plants indicates WUE is species-specific.
Petra Zahajská, Carolina Olid, Johanna Stadmark, Sherilyn C. Fritz, Sophie Opfergelt, and Daniel J. Conley
Biogeosciences, 18, 2325–2345, https://doi.org/10.5194/bg-18-2325-2021, https://doi.org/10.5194/bg-18-2325-2021, 2021
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The drivers of high accumulation of single-cell siliceous algae (diatoms) in a high-latitude lake have not been fully characterized before. We studied silicon cycling of the lake through water, radon, silicon, and stable silicon isotope balances. Results showed that groundwater brings 3 times more water and dissolved silica than the stream inlet. We demonstrate that groundwater discharge and low sediment deposition have driven the high diatom accumulation in the studied lake in the past century.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671, https://doi.org/10.5194/bg-18-1645-2021, https://doi.org/10.5194/bg-18-1645-2021, 2021
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The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Zhongjie Yu and Emily M. Elliott
Biogeosciences, 18, 805–829, https://doi.org/10.5194/bg-18-805-2021, https://doi.org/10.5194/bg-18-805-2021, 2021
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In this study, we demonstrated distinct nitrogen isotope effects for nitric oxide (NO) production from major microbial and chemical NO sources in an agricultural soil. These results highlight characteristic bond-forming and breaking mechanisms associated with microbial and chemical NO production and implicate that simultaneous isotopic analyses of NO and nitrous oxide (N2O) can lead to unprecedented insights into the sources and processes controlling NO and N2O emissions from agricultural soils.
Quentin Charbonnier, Julien Bouchez, Jérôme Gaillardet, and Éric Gayer
Biogeosciences, 17, 5989–6015, https://doi.org/10.5194/bg-17-5989-2020, https://doi.org/10.5194/bg-17-5989-2020, 2020
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The abundance and isotope composition of the trace metal barium (Ba) allows us to track and quantify nutrient cycling throughout the Amazon Basin. In particular, we show that the Ba biological fingerprint evolves from that of a strong net nutrient uptake in the mountainous area of the Andes towards efficient nutrient recycling on the plains of the Lower Amazon. Our study highlights the fact that the geochemical signature of rock-derived nutrients transported by the Amazon is scarred by life.
Ajinkya G. Deshpande, Thomas W. Boutton, Ayumi Hyodo, Charles W. Lafon, and Georgianne W. Moore
Biogeosciences, 17, 5639–5653, https://doi.org/10.5194/bg-17-5639-2020, https://doi.org/10.5194/bg-17-5639-2020, 2020
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Wetland forests in the southern USA are threatened by changing climate and human-induced pressures. We used tree ring widths and C isotopes as indicators of forest growth and physiological stress, respectively, and compared these to past climate data. We observed that vegetation growing in the drier patches is susceptible to stress, while vegetation growth and physiology in wetter patches is less sensitive to unfavorable environmental conditions, highlighting the importance of optimal wetness.
Dominika Lewicka-Szczebak, Maciej Piotr Lewicki, and Reinhard Well
Biogeosciences, 17, 5513–5537, https://doi.org/10.5194/bg-17-5513-2020, https://doi.org/10.5194/bg-17-5513-2020, 2020
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We present the first validation of N2O isotopic approaches for estimating N2O source pathways and N2O reduction. These approaches are widely used for tracing soil nitrogen cycling, but the results of these estimations are very uncertain. Here we report the results from parallel treatments allowing for precise validation of these approaches, and we propose the best strategies for results interpretation, including the new idea of an isotope model integrating three isotopic signatures of N2O.
Markus Raitzsch, Claire Rollion-Bard, Ingo Horn, Grit Steinhoefel, Albert Benthien, Klaus-Uwe Richter, Matthieu Buisson, Pascale Louvat, and Jelle Bijma
Biogeosciences, 17, 5365–5375, https://doi.org/10.5194/bg-17-5365-2020, https://doi.org/10.5194/bg-17-5365-2020, 2020
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The isotopic composition of boron in carbonate shells of marine unicellular organisms is a popular tool to estimate seawater pH. Usually, many shells need to be dissolved and measured for boron isotopes, but the information on their spatial distribution is lost. Here, we investigate two techniques that allow for measuring boron isotopes within single shells and show that they yield robust mean values but provide additional information on the heterogeneity within and between single shells.
Florian Einsiedl, Anja Wunderlich, Mathieu Sebilo, Ömer K. Coskun, William D. Orsi, and Bernhard Mayer
Biogeosciences, 17, 5149–5161, https://doi.org/10.5194/bg-17-5149-2020, https://doi.org/10.5194/bg-17-5149-2020, 2020
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Nitrate pollution of freshwaters and methane emissions into the atmosphere are crucial factors in deteriorating the quality of drinking water and in contributing to global climate change. Here, we report vertical concentration and stable isotope profiles of CH4, NO3-, NO2-, and NH4+ in the water column of Fohnsee (southern Bavaria, Germany) that may indicate linkages between nitrate-dependent anaerobic methane oxidation and the anaerobic oxidation of ammonium.
Ruifang C. Xie, Frédéric A. C. Le Moigne, Insa Rapp, Jan Lüdke, Beat Gasser, Marcus Dengler, Volker Liebetrau, and Eric P. Achterberg
Biogeosciences, 17, 4919–4936, https://doi.org/10.5194/bg-17-4919-2020, https://doi.org/10.5194/bg-17-4919-2020, 2020
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Thorium-234 (234Th) is widely used to study carbon fluxes from the surface ocean to depth. But few studies stress the relevance of oceanic advection and diffusion on the downward 234Th fluxes in nearshore environments. Our study in offshore Peru showed strong temporal variations in both the importance of physical processes on 234Th flux estimates and the oceanic residence time of 234Th, whereas salinity-derived seawater 238U activities accounted for up to 40 % errors in 234Th flux estimates.
Ralf A. Oeser and Friedhelm von Blanckenburg
Biogeosciences, 17, 4883–4917, https://doi.org/10.5194/bg-17-4883-2020, https://doi.org/10.5194/bg-17-4883-2020, 2020
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We present a novel strategy to decipher the relative impact of biogenic and abiotic drivers of weathering. We parameterized the nutrient fluxes in four ecosystems along a climate and vegetation gradient situated on the Chilean Coastal Cordillera. We investigated how nutrient demand by plants drives weathering. We found that the increase in biomass nutrient demand is accommodated by faster nutrient recycling rather than an increase in the weathering–release rates.
Tito Arosio, Malin M. Ziehmer, Kurt Nicolussi, Christian Schlüchter, and Markus Leuenberger
Biogeosciences, 17, 4871–4882, https://doi.org/10.5194/bg-17-4871-2020, https://doi.org/10.5194/bg-17-4871-2020, 2020
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Stable isotopes in tree-ring cellulose are tools for climatic reconstructions, but interpretation is challenging due to nonclimate trends. We analyzed the tree-age trends in tree-ring isotopes of deciduous larch and evergreen cembran pine. Samples covering the whole Holocene were collected at the tree line in the Alps. For cambial ages over 100 years, we prove the absence of age trends in δD, δ18O, and δ13C for both species. For lower cambial ages, trends differ for each isotope and species.
Yuyang He, Xiaobin Cao, and Huiming Bao
Biogeosciences, 17, 4785–4795, https://doi.org/10.5194/bg-17-4785-2020, https://doi.org/10.5194/bg-17-4785-2020, 2020
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Different carbon sites in a large organic molecule have different isotope compositions. Different carbon sites may not have the chance to exchange isotopes at all. The lack of appreciation of this notion might be blamed for an unsettled debate on the thermodynamic state of an organism. Here we demonstrate using minerals, N2O, and acetic acid that the dearth of exchange among different carbon sites renders them as independent as if they were different elements in organic molecules.
Felix M. Spielmann, Albin Hammerle, Florian Kitz, Katharina Gerdel, and Georg Wohlfahrt
Biogeosciences, 17, 4281–4295, https://doi.org/10.5194/bg-17-4281-2020, https://doi.org/10.5194/bg-17-4281-2020, 2020
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Carbonyl sulfide (COS) can be used as a proxy for plant photosynthesis on an ecosystem scale. However, the relationships between COS and CO2 fluxes and their dependence on daily to seasonal changes in environmental drivers are still poorly understood. We examined COS and CO2 ecosystem fluxes above an agriculturally used mountain grassland for 6 months. Harvesting of the grassland disturbed the otherwise stable COS-to-CO2 uptake ratio. We even found the canopy to release COS during those times.
Getachew Agmuas Adnew, Thijs L. Pons, Gerbrand Koren, Wouter Peters, and Thomas Röckmann
Biogeosciences, 17, 3903–3922, https://doi.org/10.5194/bg-17-3903-2020, https://doi.org/10.5194/bg-17-3903-2020, 2020
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We measured the effect of photosynthesis, the largest flux in the carbon cycle, on the triple oxygen isotope composition of atmospheric CO2 at the leaf level during gas exchange using three plant species. The main factors that limit the impact of land vegetation on the triple oxygen isotope composition of atmospheric CO2 are identified, characterized and discussed. The effect of photosynthesis on the isotopic composition of CO2 is commonly quantified as discrimination (ΔA).
Moritz Schroll, Frank Keppler, Markus Greule, Christian Eckhardt, Holger Zorn, and Katharina Lenhart
Biogeosciences, 17, 3891–3901, https://doi.org/10.5194/bg-17-3891-2020, https://doi.org/10.5194/bg-17-3891-2020, 2020
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Fungi have recently been identified to produce the greenhouse gas methane. Here, we investigated the stable carbon isotope values of methane produced by saprotrophic fungi. Our results show that stable isotope values of methane from fungi are dependent on the fungal species and the metabolized substrate. They cover a broad range and overlap with stable carbon isotope values of methane reported for methanogenic archaea, the thermogenic degradation of organic matter, and other eukaryotes.
Pranav Hirave, Guido L. B. Wiesenberg, Axel Birkholz, and Christine Alewell
Biogeosciences, 17, 2169–2180, https://doi.org/10.5194/bg-17-2169-2020, https://doi.org/10.5194/bg-17-2169-2020, 2020
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Sediment input into water bodies is a prominent threat to freshwater ecosystems. We tested the stability of tracers employed in freshwater sediment tracing based on compound-specific isotope analysis during early degradation in soil. While bulk δ13C values showed no stability, δ13C values of plant-derived fatty acids and n-alkanes were stably transferred to the soil without soil particle size dependency after an early degradation in organic horizons, thus indicating their suitability as tracers.
Caroline Thaler, Amandine Katz, Magali Bonifacie, Bénédicte Ménez, and Magali Ader
Biogeosciences, 17, 1731–1744, https://doi.org/10.5194/bg-17-1731-2020, https://doi.org/10.5194/bg-17-1731-2020, 2020
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Paleoenvironment reconstructions, retrieved from δ18O and Δ47 values measured in carbonate, are compromised when crystallization occurs in isotopic disequilibrium. We show that some paleoenvironmental information can still be retrieved from these paired disequilibrium Δ47 and δ18O values. The possibility of retrieving information on paleowaters, sediments' interstitial waters, or organisms' body water at the carbonate precipitation loci will help understand past Earth and life evolution.
Guillaume Humbert, Mathieu Sébilo, Justine Fiat, Longqi Lang, Ahlem Filali, Véronique Vaury, Mathieu Spérandio, and Anniet M. Laverman
Biogeosciences, 17, 979–993, https://doi.org/10.5194/bg-17-979-2020, https://doi.org/10.5194/bg-17-979-2020, 2020
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Mitigating emissions of the greenhouse gas N2O requires understanding of the relative contribution of its producing processes in response to environmental variables. We show, using isotopic analysis, that N2O emissions from a nitrifying system were sensitive to oxygenation, temperature and NH4+ concentrations with nitrite reduction being the main N2O source. Temperature appears to be the main control on N2O production, due to its dissimilar effects on ammonium and nitrite oxidizing activities.
Oguz Yigiterhan, Ebrahim Mohd Al-Ansari, Alex Nelson, Mohamed Alaa Abdel-Moati, Jesse Turner, Hamood Abdulla Alsaadi, Barbara Paul, Ibrahim Abdullatif Al-Maslamani, Mehsin Abdulla Al-Ansi Al-Yafei, and James W. Murray
Biogeosciences, 17, 381–404, https://doi.org/10.5194/bg-17-381-2020, https://doi.org/10.5194/bg-17-381-2020, 2020
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We analyze net-tow samples of plankton and associated particulate matter from the Exclusive Economic Zone, Qatar, Arabian Gulf, using net tows with mesh sizes of 50 and 200 μm to examine the composition of plankton populations. We also focus on the role and composition of the atmospheric dust, representative of terrigenous material, deposited in the Gulf. We concluded that Al, Fe, Cr, Co, Mn, Ni, Pb, and Li are of dust origin and As, Cd, Cu, Mo, Zn, and Ca are of anthropogenic/biogenic origin.
Cited articles
Blanck, E., Melville, R., and Sachse, J.: Zur Bestimmung des
Gesamtschwefelgehaltes in der Pflanzensubstanz, Bodenkd. und
Pflanzenernährung, 6, 56–64, https://doi.org/10.1002/jpln.19380060106, 1938.
Blecker, S. W., King, S. L., Derry, L. A., Chadwick, O. A., Ippolito, J. A.,
and Kelly, E. F.: The ratio of germanium to silicon in plant phytoliths:
Quantification of biological discrimination under controlled experimental
conditions, Biogeochemistry, 86, 189–199, https://doi.org/10.1007/s10533-007-9154-7,
2007.
Broadley, M., Brown, P., Cakmak, I., Ma, J. F., Rengel, Z., and Zhao, F.:
Beneficial Elements, in: Marschner's Mineral Nutrition of Higher Plants, Academic Press, San Diego, 249–269, 2012.
Carey, J. C. and Fulweiler, R. W.: The Terrestrial Silica Pump, PLoS One,
7, e52932, https://doi.org/10.1371/journal.pone.0052932, 2012.
Carey, J. C. and Fulweiler, R. W.: Human appropriation of biogenic silicon
– the increasing role of agriculture, Funct. Ecol., 30, 1331–1339,
https://doi.org/10.1111/1365-2435.12544, 2016.
Cooke, J., DeGabriel, J. L., and Hartley, S. E.: The functional ecology of
plant silicon: geoscience to genes, Funct. Ecol., 30, 1270–1276,
https://doi.org/10.1111/1365-2435.12711, 2016.
Coplen, T. B., Hopple, J. A., Böhlke, J. K., Peiser, H. S., Rieder, S.
E., Krouse, H. R., Rosman, K. J. R., Ding, T., Vocke, R. D. J.,
Révész, K. M., Lamberty, A., Taylor, P., and De Bièvre, P.:
Compilation of minimum and maximum isotope ratios of selected elements in
naturally occurring terrestrial materials and reagents, US Geol. Surv.
Water-Resources Investig. Rep. 01-4222, 45–50, available at:
http://pubs.usgs.gov/wri/wri014222/ (last access: 3 December 2020), 2002.
Cornelis, J.-T. T., Delvaux, B., Cardinal, D., André, L., Ranger, J., and
Opfergelt, S.: Tracing mechanisms controlling the release of dissolved
silicon in forest soil solutions using Si isotopes and Ge∕Si ratios,
Geochim. Cosmochim. Ac., 74, 3913–3924, https://doi.org/10.1016/j.gca.2010.04.056,
2010.
Coskun, D., Deshmukh, R., Sonah, H., Menzies, J. G., Reynolds, O., Ma, J.
F., Kronzucker, H. J., and Bélanger, R. R.: In defence of the selective
transport and role of silicon in plants, New Phytol., 223, 514–516,
https://doi.org/10.1111/nph.15764, 2019a.
Coskun, D., Deshmukh, R., Sonah, H., Menzies, J. G., Reynolds, O., Ma, J.
F., Kronzucker, H. J., and Bélanger, R. R.: The controversies of
silicon's role in plant biology, New Phytol., 221, 67–85,
https://doi.org/10.1111/nph.15343, 2019b.
Delvigne, C., Opfergelt, S., Cardinal, D., Delvaux, B., and André, L.:
Distinct silicon and germanium pathways in the soil-plant system: Evidence
from banana and horsetail, J. Geophys. Res.-Biogeo., 114, G02013, https://doi.org/10.1029/2008JG000899, 2009.
Delvigne, C., Guihou, A., Schuessler, J. A., Savage, P., Fischer, S.,
Hatton, E., Hendry, K. R., Bayon, G., Ponzevera, E., and Georg, B.: An
inter-comparison exercise of the Si isotope composition of soils and plant
reference materials, Geophysical Research Abstracts, 21, 18488, 2019.
Derry, L. A., Kurtz, A. C., Ziegler, K., and Chadwick, O. A.: Biological
control of terrestrial silica cycling and export fluxes to watersheds,
Nature, 433, 728–731, https://doi.org/10.1038/nature03299, 2005.
Deshmukh, R. K., Vivancos, J., Ramakrishnan, G., Guérin, V., Carpentier,
G., Sonah, H., Labbé, C., Isenring, P., Belzile, F. J., and Bélanger,
R. R.: A precise spacing between the NPA domains of aquaporins is essential
for silicon permeability in plants, Plant J., 83, 489–500,
https://doi.org/10.1111/tpj.12904, 2015.
Deshmukh, R., Bélanger, R. R., and Hartley, S.: Molecular evolution of
aquaporins and silicon influx in plants, Funct. Ecol., 30, 1277–1285,
https://doi.org/10.1111/1365-2435.12570, 2016.
Ding, T. P., Ma, G. R., Shui, M. X., Wan, D. F., and Li, R. H.: Silicon
isotope study on rice plants from the Zhejiang province, China, Chem. Geol.,
218, 41–50, https://doi.org/10.1016/j.chemgeo.2005.01.018, 2005.
Ding, T. P., Tian, S. H., Sun, L., Wu, L. H., Zhou, J. X., and Chen, Z. Y.:
Silicon isotope fractionation between rice plants and nutrient solution and
its significance to the study of the silicon cycle, Geochim. Cosmochim.
Ac., 72, 5600–5615, https://doi.org/10.1016/j.gca.2008.09.006, 2008a.
Ding, T. P., Zhou, J. X., Wan, D. F., Chen, Z. Y., Wang, C. Y. and Zhang,
F.: Silicon isotope fractionation in bamboo and its significance to the
biogeochemical cycle of silicon, Geochim. Cosmochim. Ac., 72,
1381–1395, https://doi.org/10.1016/j.gca.2008.01.008, 2008b.
Epstein, E.: The anomaly of silicon in plant biology., Proc. Natl. Acad.
Sci. USA, 91, 11–17, https://doi.org/10.1073/pnas.91.1.11, 1994.
Epstein, E.: Silicon, Annu. Rev. Plant Physiol. Plant Mol. Biol., 50,
641–664, 1999.
Epstein, E.: Chapter 1 Silicon in plants: Facts vs. concepts, in: Studies in
Plant Science, vol. 8, edited by: Datnoff, L. E., Snyder, G. H., and Korndörfer, G. H., Elsevier, 1–15, 2001.
Exley, C.: A possible mechanism of biological silicification in plants,
Front. Plant Sci., 6, 1–7, https://doi.org/10.3389/fpls.2015.00853, 2015.
Exley, C. and Guerriero, G.: A reappraisal of biological silicification in
plants?, New Phytol., 223, 511–513, https://doi.org/10.1111/nph.15752, 2019.
Exley, C., Guerriero, G., and Lopez, X.: How is silicic acid transported in
plants?, Silicon, 12, 2641–2645, https://doi.org/10.1007/s12633-019-00360-w, 2020.
Frew, A., Weston, L. A., Reynolds, O. L., and Gurr, G. M.: The role of
silicon in plant biology: A paradigm shift in research approach, Ann. Bot.,
121, 1265–1273, https://doi.org/10.1093/aob/mcy009, 2018.
Frick, D. A., Schuessler, J. A., Sommer, M., and Blanckenburg, F.: Laser
Ablation In Situ Silicon Stable Isotope Analysis of Phytoliths, Geostand.
Geoanalytical Res., 43, 77–91, https://doi.org/10.1111/ggr.12243, 2019.
Geilert, S., Vroon, P. Z., Roerdink, D. L., Van Cappellen, P., and van
Bergen, M. J.: Silicon isotope fractionation during abiotic silica
precipitation at low temperatures: Inferences from flow-through experiments,
Geochim. Cosmochim. Ac., 142, 95–114, https://doi.org/10.1016/j.gca.2014.07.003,
2014.
Georg, R. B., Reynolds, B. C., Frank, M., and Halliday, A. N.: New sample
preparation techniques for the determination of Si isotopic compositions
using MC-ICPMS, Chem. Geol., 235, 95–104,
https://doi.org/10.1016/j.chemgeo.2006.06.006, 2006.
He, C., Ma, J., and Wang, L.: A hemicellulose-bound form of silicon with
potential to improve the mechanical properties and regeneration of the cell
wall of rice, New Phytol., 206, 1051–1062, https://doi.org/10.1111/nph.13282, 2015.
He, H. T., Zhang, S., Zhu, C., and Liu, Y.: Equilibrium and kinetic Si
isotope fractionation factors and their implications for Si isotope
distributions in the Earth's surface environments, Acta Geochim., 35,
15–24, https://doi.org/10.1007/s11631-015-0079-x, 2016.
Hodson, M. J. and Sangster, A. G.: Subcellular localization of mineral
deposits in the roots of wheat (Triticum aestivum L.), Protoplasma, 151,
19–32, https://doi.org/10.1007/BF01403298, 1989.
Hodson, M. J., White, P. J., Mead, A., and Broadley, M. R.: Phylogenetic
variation in the silicon composition of plants, Ann. Bot., 96,
1027–1046, https://doi.org/10.1093/aob/mci255, 2005.
Hodson, M. J., Parker, A. G., Leng, M. J., and Sloane, H. J.: Silicon, oxygen
and carbon isotope composition of wheat (Triticum aestivum L.) phytoliths:
implications for palaeoecology and archaeology, J. Quat. Sci., 23,
331–339, https://doi.org/10.1002/jqs.1176, 2008.
Joachimsmeier, I., Pistorius, J., Heimbach, U., Schenke, D., Kirchner, W.,
and Zwerger, P.: Frequency and intensity of guttation events in different
crops in Germany, in: 11th International Symposium of the ICP-BR Bee
Protection Group, Wageningen, The Netherlands, 2–4 November 2011, 87–90., 2012.
Jochum, K. P., Nohl, U., Herwig, K., Lammel, E., Stoll, B., and Hofmann, A.
W.: GeoReM: A New Geochemical Database for Reference Materials and Isotopic
Standards, Geostand. Geoanalytical Res., 29, 333–338,
https://doi.org/10.1111/j.1751-908X.2005.tb00904.x, 2005.
Katz, O.: Silicon content is a plant functional trait: implications in a
changing world, Flora Morphol. Distrib. Funct. Ecol. Plants, 254, 88–94, https://doi.org/10.1016/j.flora.2018.08.007, 2019.
Köster, J. R., Bol, R., Leng, M. J., Parker, A. G., Sloane, H. J., and
Ma, J. F.: Effects of active silicon uptake by rice on 29Si fractionation in
various plant parts, Rapid Commun. Mass Spectrom., 23, 2398–2402,
https://doi.org/10.1002/rcm.3971, 2009.
Leng, M. J., Swann, G. E. A., Hodson, M. J., Tyler, J. J., Patwardhan, S. V.,
and Sloane, H. J.: The Potential use of Silicon Isotope Composition of
Biogenic Silica as a Proxy for Environmental Change, Silicon, 1, 65–77,
https://doi.org/10.1007/s12633-009-9014-2, 2009.
Ma, J. F.: Role of silicon in enhancing the resistance of plants to biotic
and abiotic stresses, Soil Sci. Plant Nutr., 50, 11–18,
https://doi.org/10.1080/00380768.2004.10408447, 2004.
Ma, J. F. and Yamaji, N.: Silicon uptake and accumulation in higher plants,
Trends Plant Sci., 11, 392–397, https://doi.org/10.1016/j.tplants.2006.06.007, 2006.
Ma, J. F. and Yamaji, N.: A cooperative system of silicon transport in
plants, Trends Plant Sci., 20, 435–442,
https://doi.org/10.1016/j.tplants.2015.04.007, 2015.
Ma, J. F., Miyake, Y., and Takahashi, E.: Chapter 2 Silicon as a beneficial
element for crop plants, in: Studies in Plant Science, vol. 8,
edited by: Datnoff, L. E., Snyder, G. H., and Korndörfer, G. H., Elsevier, 17–39, 2001.
Ma, J. F., Tamai, K., Yamaji, N., Mitani, N., Konishi, S., Katsuhara, M.,
Ishiguro, M., Murata, Y., and Yano, M.: A silicon transporter in rice,
Nature, 440, 688–691, https://doi.org/10.1038/nature04590, 2006.
Ma, J. F., Yamaji, N., Mitani, N., Tamai, K., Konishi, S., Fujiwara, T.,
Katsuhara, M., and Yano, M.: An efflux transporter of silicon in rice,
Nature, 448, 209–212, https://doi.org/10.1038/nature05964, 2007.
Mariotti, A., Germon, J. C., Hubert, P., Kaiser, P., Letolle, R., Tardieux,
A., and Tardieux, P.: Experimental determination of nitrogen kinetic isotope
fractionation: Some principles; illustration for the denitrification and
nitrification processes, Plant Soil, 62, 413–430,
https://doi.org/10.1007/BF02374138, 1981.
Marron, A. O., Chappell, H., Ratcliffe, S., and Goldstein, R. E.: A model for
the effects of germanium on silica biomineralization in choanoflagellates,
J. R. Soc. Interface, 13, 20160485, https://doi.org/10.1098/rsif.2016.0485, 2016.
Marschner, H. and Marschner, P.: Marschner's mineral nutrition of higher
plants, Academic Press, availabe at:
https://www.sciencedirect.com/science/book/9780123849052 (last access: 5 April 2018), 2012.
Mills, R. and Harris, K. R.: The effect of isotopic substitution on
diffusion in liquids, Chem. Soc. Rev., 5, 215, https://doi.org/10.1039/cs9760500215,
1976.
Mitani, N., Chiba, Y., Yamaji, N., and Ma, J. F.: Identification and
Characterization of Maize and Barley Lsi2-Like Silicon Efflux Transporters
Reveals a Distinct Silicon Uptake System from That in Rice, Plant Cell,
21, 2133–2142, https://doi.org/10.1105/tpc.109.067884, 2009.
Mühling, K. H. and Sattelmacher, B.: Apoplastic Ion Concentration of
Intact Leaves of Field Bean (Vicia faba) as Influenced by Ammonium and
Nitrate Nutrition, J. Plant Physiol., 147, 81–86,
https://doi.org/10.1016/S0176-1617(11)81417-3, 1995.
Oelze, M., von Blanckenburg, F., Bouchez, J., Hoellen, D., and Dietzel, M.:
The effect of Al on Si isotope fractionation investigated by silica
precipitation experiments, Chem. Geol., 397, 94–105,
https://doi.org/10.1016/j.chemgeo.2015.01.002, 2015.
Oelze, M., Schuessler, J. A., and von Blanckenburg, F.: Mass bias
stabilization by Mg doping for Si stable isotope analysis by MC-ICP-MS, J.
Anal. At. Spectrom., 31, 2094–2100, https://doi.org/10.1039/C6JA00218H, 2016.
O'Leary, M. H.: Measurement of the isotope fractionation associated with
diffusion of carbon dioxide in aqueous solution, J. Phys. Chem., 88,
823–825, https://doi.org/10.1021/j150648a041, 1984.
Opfergelt, S., Cardinal, D., Henriet, C., Draye, X., André, L., and
Delvaux, B.: Silicon Isotopic Fractionation by Banana (Musa spp.) Grown in a
Continuous Nutrient Flow Device, Plant Soil, 285, 333–345,
https://doi.org/10.1007/s11104-006-9019-1, 2006.
Opfergelt, S., Cardinal, D., André, L., Delvigne, C., Bremond, L., and
Delvaux, B.: Variations of δ30Si and Ge∕Si with weathering and
biogenic input in tropical basaltic ash soils under monoculture, Geochim.
Cosmochim. Ac., 74, 225–240, https://doi.org/10.1016/j.gca.2009.09.025, 2010.
Paolicchi, M., Benvenuto, M. L., Honaine, M. F., and Osterrieth, M.: Root
silicification of grasses and crops from the Pampean region and its
relevance to silica and silicophytolith content of soils, Plant Soil, 444, 351–363,
https://doi.org/10.1007/s11104-019-04287-4, 2019.
Poitrasson, F.: Silicon Isotope Geochemistry, Rev. Mineral. Geochem.,
82, 289–344, https://doi.org/10.2138/rmg.2017.82.8, 2017.
Pokrovski, G. S. and Schott, J.: Experimental study of the complexation of
silicon and germanium with aqueous organic species: Implications for
germanium and silicon transport and Ge∕Si ratio in natural waters, Geochim.
Cosmochim. Ac., 62, 3413–3428, 1998.
Raven, J. A.: Chapter 3 Silicon transport at the cell and tissue level, in:
Studies in Plant Science, vol. 8, edited by: Datnoff, L. E., Snyder, G. H., and Korndörfer, G. H., Elsevier, 41–55, 2001.
Richmond, K. E. and Sussman, M.: Got silicon? The non-essential beneficial
plant nutrient, Curr. Opin. Plant Biol., 6, 268–272,
https://doi.org/10.1016/S1369-5266(03)00041-4, 2003.
Richter, F. M., Mendybaev, R. A., Christensen, J. N., Hutcheon, I. D.,
Williams, R. W., Sturchio, N. C., and Beloso, A. D.: Kinetic isotopic
fractionation during diffusion of ionic species in water, Geochim.
Cosmochim. Ac., 70, 277–289, https://doi.org/10.1016/j.gca.2005.09.016, 2006.
Roerdink, D. L., van den Boorn, S. H. J. M., Geilert, S., Vroon, P. Z., and
van Bergen, M. J.: Experimental constraints on kinetic and equilibrium
silicon isotope fractionation during the formation of non-biogenic chert
deposits, Chem. Geol., 402, 40–51, https://doi.org/10.1016/j.chemgeo.2015.02.038, 2015.
Schilling, G., Ansorge, H., Borchmann, W., Markgraf, G., and Peschke, H.:
Pflanzenernährung und Düngung, VEB Deutscher Landwirtschaftsverlag, Berlin, East Germany,
1982.
Schuessler, J. A. and von Blanckenburg, F.: Testing the limits of
micro-scale analyses of Si stable isotopes by femtosecond laser ablation
multicollector inductively coupled plasma mass spectrometry with application
to rock weathering, Spectrochim. Ac. B, 98, 1–18,
https://doi.org/10.1016/j.sab.2014.05.002, 2014.
Schuessler, J. A., Kämpf, H., Koch, U., and Alawi, M.: Earthquake impact
on iron isotope signatures recorded in mineral spring water, J. Geophys.
Res.-Sol. Ea., 121, 8548–8568, https://doi.org/10.1002/2016JB013408, 2016.
Sommer, M., Kaczorek, D., Kuzyakov, Y., and Breuer, J.: Silicon pools and
fluxes in soils and landscapes – a review, J. Plant Nutr. Soil Sci., 169,
310–329, https://doi.org/10.1002/jpln.200521981, 2006.
Sommer, M., Jochheim, H., Höhn, A., Breuer, J., Zagorski, Z., Busse, J., Barkusky, D., Meier, K., Puppe, D., Wanner, M., and Kaczorek, D.: Si cycling in a forest biogeosystem – the importance of transient state biogenic Si pools, Biogeosciences, 10, 4991–5007, https://doi.org/10.5194/bg-10-4991-2013, 2013.
Sonah, H., Deshmukh, R. K., Labbé, C., and Bélanger, R. R.: Analysis
of aquaporins in Brassicaceae species reveals high-level of conservation and
dynamic role against biotic and abiotic stress in canola, Sci. Rep., 7,
1–17, https://doi.org/10.1038/s41598-017-02877-9, 2017.
Sparks, J. P., Chandra, S., Derry, L. A., Parthasarathy, M. V., Daugherty,
C. S., and Griffin, R.: Subcellular localization of silicon and germanium in
grass root and leaf tissues by SIMS: Evidence for differential and active
transport, Biogeochemistry, 104, 237–249,
https://doi.org/10.1007/s10533-010-9498-2, 2011.
Stamm, F. M., Zambardi, T., Chmeleff, J., Schott, J., von Blanckenburg, F.,
and Oelkers, E. H.: The experimental determination of equilibrium Si isotope
fractionation factors among H4SiO4°, H3SiO4− and amorphous silica
(SiO2× 0.32 H2O) at 25 and 75∘C using the
three-isotope method, Geochim. Cosmochim. Ac., 255, 49–68,
https://doi.org/10.1016/j.gca.2019.03.035, 2019.
Steinhoefel, G., Breuer, J., von Blanckenburg, F., Horn, I., and Sommer, M.:
The dynamics of Si cycling during weathering in two small catchments in the
Black Forest (Germany) traced by Si isotopes, Chem. Geol., 466,
389–402, https://doi.org/10.1016/j.chemgeo.2017.06.026, 2017.
Sun, H., Duan, Y., Mitani-Ueno, N., Che, J., Jia, J., Liu, J., Guo, J., Ma,
J. F., and Gong, H.: Tomato roots have a functional silicon influx
transporter but not a functional silicon efflux transporter, Plant Cell
Environ., 43, 732–744, https://doi.org/10.1111/pce.13679, 2020.
Sun, L., Wu, L. H., Ding, T. P., and Tian, S. H.: Silicon isotope
fractionation in rice plants, an experimental study on rice growth under
hydroponic conditions, Plant Soil, 304, 291–300,
https://doi.org/10.1007/s11104-008-9552-1, 2008.
Sun, Y., Wu, L., and Li, X.: Experimental Determination of Silicon Isotope
Fractionation in Rice, PLoS One, 11, e0168970,
https://doi.org/10.1371/journal.pone.0168970, 2016a.
Sun, Y., Wu, L., Li, X., Sun, L., Gao, J., and Ding, T.: Silicon Isotope
Fractionation in Rice and Cucumber Plants over a Life Cycle: Laboratory
Studies at Different External Silicon Concentrations, J. Geophys. Res.-Biogeo., 121, 2829–2841, https://doi.org/10.1002/2016JG003443, 2016b.
Takahashi, E., Ma, J. F., and Miyake, Y.: The possibility of silicon as an
essential element for higher plants, Comments Agric. Food Chem., 2,
99–102, 1990.
Weiss, D. J., Mason, T. F. D., Zhao, F. J., Kirk, G. J. D., Coles, B. J., and
Horstwood, M. S. A.: Isotopic discrimination of zinc in higher plants, New
Phytol., 165, 703–710, https://doi.org/10.1111/j.1469-8137.2004.01307.x, 2004.
Wiche, O., Székely, B., Moschner, C., and Heilmeier, H.: Germanium in the
soil-plant system – a review, Environ. Sci. Pollut. Res., 25,
31938–31956, https://doi.org/10.1007/s11356-018-3172-y, 2018.
Yamaji, N., Mitatni, N., and Ma, J. F.: A Transporter Regulating Silicon
Distribution in Rice Shoots, Plant Cell, 20, 1381–1389,
https://doi.org/10.1105/tpc.108.059311, 2008.
Yan, G., Nikolic, M., Ye, M., Xiao, Z., and Liang, Y.: Silicon acquisition
and accumulation in plant and its significance for agriculture, J. Integr.
Agric., 17, 2138–2150, https://doi.org/10.1016/S2095-3119(18)62037-4, 2018.
Zambardi, T. and Poitrasson, F.: Precise Determination of Silicon Isotopes
in Silicate Rock Reference Materials by MC-ICP-MS, Geostand. Geoanalytical
Res., 35, 89–99, https://doi.org/10.1111/j.1751-908X.2010.00067.x, 2011.
Zangi, R. and Filella, M.: Transport routes of metalloids into and out of
the cell: A review of the current knowledge, Chem. Biol. Interact., 197,
47–57, https://doi.org/10.1016/j.cbi.2012.02.001, 2012.
Ziegler, K., Chadwick, O. A., Brzezinski, M. A., and Kelly, E. F.: Natural
variations of δ30Si ratios during progressive basalt weathering,
Hawaiian Islands, Geochim. Cosmochim. Ac., 69, 4597–4610,
https://doi.org/10.1016/j.gca.2005.05.008, 2005.
Short summary
Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Silicon is taken up by some plants to increase structural stability and to develop stress...
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