Articles | Volume 19, issue 17
https://doi.org/10.5194/bg-19-4067-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-19-4067-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
01 Sep 2022
Research article |
| 01 Sep 2022
| 01 Sep 2022
Intercomparison of methods to estimate gross primary production based on CO2 and COS flux measurements
Kukka-Maaria Kohonen
CORRESPONDING AUTHOR
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Roderick Dewar
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia
Gianluca Tramontana
Image Processing Laboratory (IPL), Parc Científic Universitat de València, Universitat de València, Paterna, Spain
Terrasystem s.r.l, Viterbo, Italy
Aleksanteri Mauranen
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Pasi Kolari
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Linda M. J. Kooijmans
Meteorology and Air Quality, Wageningen University and Research, Wageningen, the Netherlands
Dario Papale
DIBAF, Department for Innovation in Biological, Agro-food and Forest Systems, University of Tuscia, Viterbo, Italy
IAFES, Euro-Mediterranean Center for Climate Change (CMCC), Viterbo, Italy
Timo Vesala
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
Ivan Mammarella
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Related authors
Anna-Maria Virkkala, Isabel Wargowsky, Judith Vogt, McKenzie A. Kuhn, Simran Madaan, Richard O'Keefe, Tiffany Windholz, Kyle A. Arndt, Brendan M. Rogers, Jennifer D. Watts, Kelcy Kent, Mathias Göckede, David Olefeldt, Gerard Rocher-Ros, Edward A. G. Schuur, David Bastviken, Kristoffer Aalstad, Kelly Aho, Joonatan Ala-Könni, Haley Alcock, Inge Althuizen, Christopher D. Arp, Jun Asanuma, Katrin Attermeyer, Mika Aurela, Sivakiruthika Balathandayuthabani, Alan Barr, Maialen Barret, Ochirbat Batkhishig, Christina Biasi, Mats P. Björkman, Andrew Black, Elena Blanc-Betes, Pascal Bodmer, Julia Boike, Abdullah Bolek, Frédéric Bouchard, Ingeborg Bussmann, Lea Cabrol, Eleonora Canfora, Sean Carey, Karel Castro-Morales, Namyi Chae, Andres Christen, Torben R. Christensen, Casper T. Christiansen, Housen Chu, Graham Clark, Francois Clayer, Patrick Crill, Christopher Cunada, Scott J. Davidson, Joshua F. Dean, Sigrid Dengel, Matteo Detto, Catherine Dieleman, Florent Domine, Egor Dyukarev, Colin Edgar, Bo Elberling, Craig A. Emmerton, Eugenie Euskirchen, Grant Falvo, Thomas Friborg, Michelle Garneau, Mariasilvia Giamberini, Mikhail V. Glagolev, Miquel A. Gonzalez-Meler, Gustaf Granath, Jón Guðmundsson, Konsta Happonen, Yoshinobu Harazono, Lorna Harris, Josh Hashemi, Nicholas Hasson, Janna Heerah, Liam Heffernan, Manuel Helbig, Warren Helgason, Michal Heliasz, Greg Henry, Geert Hensgens, Tetsuya Hiyama, Macall Hock, David Holl, Beth Holmes, Jutta Holst, Thomas Holst, Gabriel Hould-Gosselin, Elyn Humphreys, Jacqueline Hung, Jussi Huotari, Hiroki Ikawa, Danil V. Ilyasov, Mamoru Ishikawa, Go Iwahana, Hiroki Iwata, Marcin Antoni Jackowicz-Korczynski, Joachim Jansen, Järvi Järveoja, Vincent E. J. Jassey, Rasmus Jensen, Katharina Jentzsch, Robert G. Jespersen, Carl-Fredrik Johannesson, Chersity P. Jones, Anders Jonsson, Ji Young Jung, Sari Juutinen, Evan Kane, Jan Karlsson, Sergey Karsanaev, Kuno Kasak, Julia Kelly, Kasha Kempton, Marcus Klaus, George W. Kling, Natacha Kljun, Jacqueline Knutson, Hideki Kobayashi, John Kochendorfer, Kukka-Maaria Kohonen, Pasi Kolari, Mika Korkiakoski, Aino Korrensalo, Pirkko Kortelainen, Egle Koster, Kajar Koster, Ayumi Kotani, Praveena Krishnan, Juliya Kurbatova, Lars Kutzbach, Min Jung Kwon, Ethan D. Kyzivat, Jessica Lagroix, Theodore Langhorst, Elena Lapshina, Tuula Larmola, Klaus S. Larsen, Isabelle Laurion, Justin Ledman, Hanna Lee, A. Joshua Leffler, Lance Lesack, Anders Lindroth, David Lipson, Annalea Lohila, Efrén López-Blanco, Vincent L. St. Louis, Erik Lundin, Misha Luoto, Takashi Machimura, Marta Magnani, Avni Malhotra, Marja Maljanen, Ivan Mammarella, Elisa Männistö, Luca Belelli Marchesini, Phil Marsh, Pertti J. Martkainen, Maija E. Marushchak, Mikhail Mastepanov, Alex Mavrovic, Trofim Maximov, Christina Minions, Marco Montemayor, Tomoaki Morishita, Patrick Murphy, Daniel F. Nadeau, Erin Nicholls, Mats B. Nilsson, Anastasia Niyazova, Jenni Nordén, Koffi Dodji Noumonvi, Hannu Nykanen, Walter Oechel, Anne Ojala, Tomohiro Okadera, Sujan Pal, Alexey V. Panov, Tim Papakyriakou, Dario Papale, Sang-Jong Park, Frans-Jan W. Parmentier, Gilberto Pastorello, Mike Peacock, Matthias Peichl, Roman Petrov, Kyra St. Pierre, Norbert Pirk, Jessica Plein, Vilmantas Preskienis, Anatoly Prokushkin, Jukka Pumpanen, Hilary A. Rains, Niklas Rakos, Aleski Räsänen, Helena Rautakoski, Riika Rinnan, Janne Rinne, Adrian Rocha, Nigel Roulet, Alexandre Roy, Anna Rutgersson, Aleksandr F. Sabrekov, Torsten Sachs, Erik Sahlée, Alejandro Salazar, Henrique Oliveira Sawakuchi, Christopher Schulze, Roger Seco, Armando Sepulveda-Jauregui, Svetlana Serikova, Abbey Serrone, Hanna M. Silvennoinen, Sofie Sjogersten, June Skeeter, Jo Snöälv, Sebastian Sobek, Oliver Sonnentag, Emily H. Stanley, Maria Strack, Lena Strom, Patrick Sullivan, Ryan Sullivan, Anna Sytiuk, Torbern Tagesson, Pierre Taillardat, Julie Talbot, Suzanne E. Tank, Mario Tenuta, Irina Terenteva, Frederic Thalasso, Antoine Thiboult, Halldor Thorgeirsson, Fenix Garcia Tigreros, Margaret Torn, Amy Townsend-Small, Claire Treat, Alain Tremblay, Carlo Trotta, Eeva-Stiina Tuittila, Merritt Turetsky, Masahito Ueyama, Muhammad Umair, Aki Vähä, Lona van Delden, Maarten van Hardenbroek, Andrej Varlagin, Ruth K. Varner, Elena Veretennikova, Timo Vesala, Tarmo Virtanen, Carolina Voigt, Jorien E. Vonk, Robert Wagner, Katey Walter Anthony, Qinxue Wang, Masataka Watanabe, Hailey Webb, Jeffrey M. Welker, Andreas Westergaard-Nielsen, Sebastian Westermann, Jeffrey R. White, Christian Wille, Scott N. Williamson, Scott Zolkos, Donatella Zona, and Susan M. Natali
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2025-585, https://doi.org/10.5194/essd-2025-585, 2025
Preprint under review for ESSD
Short summary
Short summary
This dataset includes monthly measurements of carbon dioxide and methane exchange between land, water, and the atmosphere from over 1,000 sites in Arctic and boreal regions. It combines measurements from a variety of ecosystems, including wetlands, forests, tundra, lakes, and rivers, gathered by over 260 researchers from 1984–2024. This dataset can be used to improve and reduce uncertainty in carbon budgets in order to strengthen our understanding of climate feedbacks in a warming world.
Asta Laasonen, Alexander Buzacott, Kukka-Maaria Kohonen, Erik Lundin, Alexander Meire, Mari Pihlatie, and Ivan Mammarella
EGUsphere, https://doi.org/10.5194/egusphere-2025-2094, https://doi.org/10.5194/egusphere-2025-2094, 2025
Short summary
Short summary
Carbon monoxide (CO) is an important indirect greenhouse gas, but its terrestrial sinks and sources are poorly understood. We present the first CO flux measurements using the eddy covariance method in an Arctic peatland. Our results show CO fluxes are dominated by two processes: radiation driven emissions and soil uptake. Dry peatland areas acted as CO sinks, while wetter areas were CO sources. Our findings suggest current global models may underestimate Arctic CO emissions.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Jiří Dušek, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo A. Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Mana Gharun, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
Biogeosciences, 21, 5079–5115, https://doi.org/10.5194/bg-21-5079-2024, https://doi.org/10.5194/bg-21-5079-2024, 2024
Short summary
Short summary
The movement of water, carbon, and energy from the Earth's surface to the atmosphere, or flux, is an important process to understand because it impacts our lives. Here, we outline a method called FLUXCOM-X to estimate global water and CO2 fluxes based on direct measurements from sites around the world. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Ara Cho, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Richard Wehr, and Maarten C. Krol
Biogeosciences, 20, 2573–2594, https://doi.org/10.5194/bg-20-2573-2023, https://doi.org/10.5194/bg-20-2573-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) is a useful constraint for estimating photosynthesis. To simulate COS leaf flux better in the SiB4 model, we propose a novel temperature function for enzyme carbonic anhydrase (CA) activity and optimize conductances using observations. The optimal activity of CA occurs below 40 °C, and Ball–Woodrow–Berry parameters are slightly changed. These reduce/increase uptakes in the tropics/higher latitudes and contribute to resolving discrepancies in the COS global budget.
Joonatan Ala-Könni, Kukka-Maaria Kohonen, Matti Leppäranta, and Ivan Mammarella
Geosci. Model Dev., 15, 4739–4755, https://doi.org/10.5194/gmd-15-4739-2022, https://doi.org/10.5194/gmd-15-4739-2022, 2022
Short summary
Short summary
Properties of seasonally ice-covered lakes are not currently sufficiently included in global climate models. To fill this gap, this study evaluates three models that could be used to quantify the amount of heat that moves from and into the lake by the air above it and through evaporation of the ice cover. The results show that the complex nature of the surrounding environment as well as difficulties in accurately measuring the surface temperature of ice introduce errors to these models.
Timo Vesala, Kukka-Maaria Kohonen, Linda M. J. Kooijmans, Arnaud P. Praplan, Lenka Foltýnová, Pasi Kolari, Markku Kulmala, Jaana Bäck, David Nelson, Dan Yakir, Mark Zahniser, and Ivan Mammarella
Atmos. Chem. Phys., 22, 2569–2584, https://doi.org/10.5194/acp-22-2569-2022, https://doi.org/10.5194/acp-22-2569-2022, 2022
Short summary
Short summary
Carbonyl sulfide (COS) provides new insights into carbon cycle research. We present an easy-to-use flux parameterization and the longest existing time series of forest–atmosphere COS exchange measurements, which allow us to study both seasonal and interannual variability. We observed only uptake of COS by the forest on an annual basis, with 37 % variability between years. Upscaling the boreal COS uptake using a biosphere model indicates a significant missing COS sink at high latitudes.
Linda M. J. Kooijmans, Ara Cho, Jin Ma, Aleya Kaushik, Katherine D. Haynes, Ian Baker, Ingrid T. Luijkx, Mathijs Groenink, Wouter Peters, John B. Miller, Joseph A. Berry, Jerome Ogée, Laura K. Meredith, Wu Sun, Kukka-Maaria Kohonen, Timo Vesala, Ivan Mammarella, Huilin Chen, Felix M. Spielmann, Georg Wohlfahrt, Max Berkelhammer, Mary E. Whelan, Kadmiel Maseyk, Ulli Seibt, Roisin Commane, Richard Wehr, and Maarten Krol
Biogeosciences, 18, 6547–6565, https://doi.org/10.5194/bg-18-6547-2021, https://doi.org/10.5194/bg-18-6547-2021, 2021
Short summary
Short summary
The gas carbonyl sulfide (COS) can be used to estimate photosynthesis. To adopt this approach on regional and global scales, we need biosphere models that can simulate COS exchange. So far, such models have not been evaluated against observations. We evaluate the COS biosphere exchange of the SiB4 model against COS flux observations. We find that the model is capable of simulating key processes in COS biosphere exchange. Still, we give recommendations for further improvement of the model.
Fabienne Maignan, Camille Abadie, Marine Remaud, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Róisín Commane, Richard Wehr, J. Elliott Campbell, Sauveur Belviso, Stephen A. Montzka, Nina Raoult, Ulli Seibt, Yoichi P. Shiga, Nicolas Vuichard, Mary E. Whelan, and Philippe Peylin
Biogeosciences, 18, 2917–2955, https://doi.org/10.5194/bg-18-2917-2021, https://doi.org/10.5194/bg-18-2917-2021, 2021
Short summary
Short summary
The assimilation of carbonyl sulfide (COS) by continental vegetation has been proposed as a proxy for gross primary production (GPP). Using a land surface and a transport model, we compare a mechanistic representation of the plant COS uptake (Berry et al., 2013) to the classical leaf relative uptake (LRU) approach linking GPP and vegetation COS fluxes. We show that at high temporal resolutions a mechanistic approach is mandatory, but at large scales the LRU approach compares similarly.
Jordi Vilà-Guerau de Arellano, Roderick Dewar, Kim A. P. Faassen, Teemu Hölttä, Remco de Kok, Ingrid T. Luijkx, and Timo Vesala
Biogeosciences, 22, 6327–6341, https://doi.org/10.5194/bg-22-6327-2025, https://doi.org/10.5194/bg-22-6327-2025, 2025
Short summary
Short summary
This study explores how oxygen moves through tiny pores in leaves, especially when water vapor is also flowing out. We show that under common conditions, oxygen can move from the leaf to the air even when its concentration is higher outside – a surprising effect. Our findings help explain oxygen exchange in still air and support better models of plant–atmosphere interactions.
Sophie L. Baartman, Steven M. Driever, Maarten L. J. Wassenaar, Linda M. J. Kooijmans, Nerea Ubierna, Leon Mossink, Maria E. Popa, Ara Cho, Lisa Wingate, Thomas Röckmann, Steven M. A. C. van Heuven, and Maarten C. Krol
Biogeosciences, 22, 5683–5703, https://doi.org/10.5194/bg-22-5683-2025, https://doi.org/10.5194/bg-22-5683-2025, 2025
Short summary
Short summary
Carbonyl sulfide (COS) is a proposed tracer for gross primary production. For the first time, COS and carbon dioxide (CO2) uptake fluxes and isotope discrimination were jointly measured in sunflower and papyrus plants, using a flow-through plant chamber approach and varying light availability. COS isotope discrimination did not differ significantly between the species, nor with changes in light. CO2 fluxes and isotope values provided additional valuable information for data interpretation.
Anna-Maria Virkkala, Isabel Wargowsky, Judith Vogt, McKenzie A. Kuhn, Simran Madaan, Richard O'Keefe, Tiffany Windholz, Kyle A. Arndt, Brendan M. Rogers, Jennifer D. Watts, Kelcy Kent, Mathias Göckede, David Olefeldt, Gerard Rocher-Ros, Edward A. G. Schuur, David Bastviken, Kristoffer Aalstad, Kelly Aho, Joonatan Ala-Könni, Haley Alcock, Inge Althuizen, Christopher D. Arp, Jun Asanuma, Katrin Attermeyer, Mika Aurela, Sivakiruthika Balathandayuthabani, Alan Barr, Maialen Barret, Ochirbat Batkhishig, Christina Biasi, Mats P. Björkman, Andrew Black, Elena Blanc-Betes, Pascal Bodmer, Julia Boike, Abdullah Bolek, Frédéric Bouchard, Ingeborg Bussmann, Lea Cabrol, Eleonora Canfora, Sean Carey, Karel Castro-Morales, Namyi Chae, Andres Christen, Torben R. Christensen, Casper T. Christiansen, Housen Chu, Graham Clark, Francois Clayer, Patrick Crill, Christopher Cunada, Scott J. Davidson, Joshua F. Dean, Sigrid Dengel, Matteo Detto, Catherine Dieleman, Florent Domine, Egor Dyukarev, Colin Edgar, Bo Elberling, Craig A. Emmerton, Eugenie Euskirchen, Grant Falvo, Thomas Friborg, Michelle Garneau, Mariasilvia Giamberini, Mikhail V. Glagolev, Miquel A. Gonzalez-Meler, Gustaf Granath, Jón Guðmundsson, Konsta Happonen, Yoshinobu Harazono, Lorna Harris, Josh Hashemi, Nicholas Hasson, Janna Heerah, Liam Heffernan, Manuel Helbig, Warren Helgason, Michal Heliasz, Greg Henry, Geert Hensgens, Tetsuya Hiyama, Macall Hock, David Holl, Beth Holmes, Jutta Holst, Thomas Holst, Gabriel Hould-Gosselin, Elyn Humphreys, Jacqueline Hung, Jussi Huotari, Hiroki Ikawa, Danil V. Ilyasov, Mamoru Ishikawa, Go Iwahana, Hiroki Iwata, Marcin Antoni Jackowicz-Korczynski, Joachim Jansen, Järvi Järveoja, Vincent E. J. Jassey, Rasmus Jensen, Katharina Jentzsch, Robert G. Jespersen, Carl-Fredrik Johannesson, Chersity P. Jones, Anders Jonsson, Ji Young Jung, Sari Juutinen, Evan Kane, Jan Karlsson, Sergey Karsanaev, Kuno Kasak, Julia Kelly, Kasha Kempton, Marcus Klaus, George W. Kling, Natacha Kljun, Jacqueline Knutson, Hideki Kobayashi, John Kochendorfer, Kukka-Maaria Kohonen, Pasi Kolari, Mika Korkiakoski, Aino Korrensalo, Pirkko Kortelainen, Egle Koster, Kajar Koster, Ayumi Kotani, Praveena Krishnan, Juliya Kurbatova, Lars Kutzbach, Min Jung Kwon, Ethan D. Kyzivat, Jessica Lagroix, Theodore Langhorst, Elena Lapshina, Tuula Larmola, Klaus S. Larsen, Isabelle Laurion, Justin Ledman, Hanna Lee, A. Joshua Leffler, Lance Lesack, Anders Lindroth, David Lipson, Annalea Lohila, Efrén López-Blanco, Vincent L. St. Louis, Erik Lundin, Misha Luoto, Takashi Machimura, Marta Magnani, Avni Malhotra, Marja Maljanen, Ivan Mammarella, Elisa Männistö, Luca Belelli Marchesini, Phil Marsh, Pertti J. Martkainen, Maija E. Marushchak, Mikhail Mastepanov, Alex Mavrovic, Trofim Maximov, Christina Minions, Marco Montemayor, Tomoaki Morishita, Patrick Murphy, Daniel F. Nadeau, Erin Nicholls, Mats B. Nilsson, Anastasia Niyazova, Jenni Nordén, Koffi Dodji Noumonvi, Hannu Nykanen, Walter Oechel, Anne Ojala, Tomohiro Okadera, Sujan Pal, Alexey V. Panov, Tim Papakyriakou, Dario Papale, Sang-Jong Park, Frans-Jan W. Parmentier, Gilberto Pastorello, Mike Peacock, Matthias Peichl, Roman Petrov, Kyra St. Pierre, Norbert Pirk, Jessica Plein, Vilmantas Preskienis, Anatoly Prokushkin, Jukka Pumpanen, Hilary A. Rains, Niklas Rakos, Aleski Räsänen, Helena Rautakoski, Riika Rinnan, Janne Rinne, Adrian Rocha, Nigel Roulet, Alexandre Roy, Anna Rutgersson, Aleksandr F. Sabrekov, Torsten Sachs, Erik Sahlée, Alejandro Salazar, Henrique Oliveira Sawakuchi, Christopher Schulze, Roger Seco, Armando Sepulveda-Jauregui, Svetlana Serikova, Abbey Serrone, Hanna M. Silvennoinen, Sofie Sjogersten, June Skeeter, Jo Snöälv, Sebastian Sobek, Oliver Sonnentag, Emily H. Stanley, Maria Strack, Lena Strom, Patrick Sullivan, Ryan Sullivan, Anna Sytiuk, Torbern Tagesson, Pierre Taillardat, Julie Talbot, Suzanne E. Tank, Mario Tenuta, Irina Terenteva, Frederic Thalasso, Antoine Thiboult, Halldor Thorgeirsson, Fenix Garcia Tigreros, Margaret Torn, Amy Townsend-Small, Claire Treat, Alain Tremblay, Carlo Trotta, Eeva-Stiina Tuittila, Merritt Turetsky, Masahito Ueyama, Muhammad Umair, Aki Vähä, Lona van Delden, Maarten van Hardenbroek, Andrej Varlagin, Ruth K. Varner, Elena Veretennikova, Timo Vesala, Tarmo Virtanen, Carolina Voigt, Jorien E. Vonk, Robert Wagner, Katey Walter Anthony, Qinxue Wang, Masataka Watanabe, Hailey Webb, Jeffrey M. Welker, Andreas Westergaard-Nielsen, Sebastian Westermann, Jeffrey R. White, Christian Wille, Scott N. Williamson, Scott Zolkos, Donatella Zona, and Susan M. Natali
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2025-585, https://doi.org/10.5194/essd-2025-585, 2025
Preprint under review for ESSD
Short summary
Short summary
This dataset includes monthly measurements of carbon dioxide and methane exchange between land, water, and the atmosphere from over 1,000 sites in Arctic and boreal regions. It combines measurements from a variety of ecosystems, including wetlands, forests, tundra, lakes, and rivers, gathered by over 260 researchers from 1984–2024. This dataset can be used to improve and reduce uncertainty in carbon budgets in order to strengthen our understanding of climate feedbacks in a warming world.
José Ángel Callejas-Rodelas, Alexander Knohl, Ivan Mammarella, Timo Vesala, Olli Peltola, and Christian Markwitz
Biogeosciences, 22, 4507–4529, https://doi.org/10.5194/bg-22-4507-2025, https://doi.org/10.5194/bg-22-4507-2025, 2025
Short summary
Short summary
The spatial variability of CO2 and water vapour exchanges with the atmosphere was quantified above an agroforestry system and further compared to a monocropping system using a total of four eddy covariance stations. The variability of fluxes within the agroforestry site was found to be as large as the variability between agroforestry and monocropping site, induced by the heterogeneity of the site, which highlights the need for replicated measurements above such ecosystems.
Anam M. Khan, Olivia E. Clifton, Jesse O. Bash, Sam Bland, Nathan Booth, Philip Cheung, Lisa Emberson, Johannes Flemming, Erick Fredj, Stefano Galmarini, Laurens Ganzeveld, Orestis Gazetas, Ignacio Goded, Christian Hogrefe, Christopher D. Holmes, László Horváth, Vincent Huijnen, Qian Li, Paul A. Makar, Ivan Mammarella, Giovanni Manca, J. William Munger, Juan L. Pérez-Camanyo, Jonathan Pleim, Limei Ran, Roberto San Jose, Donna Schwede, Sam J. Silva, Ralf Staebler, Shihan Sun, Amos P. K. Tai, Eran Tas, Timo Vesala, Tamás Weidinger, Zhiyong Wu, Leiming Zhang, and Paul C. Stoy
Atmos. Chem. Phys., 25, 8613–8635, https://doi.org/10.5194/acp-25-8613-2025, https://doi.org/10.5194/acp-25-8613-2025, 2025
Short summary
Short summary
Vegetation removes tropospheric ozone through stomatal uptake, and accurately modeling the stomatal uptake of ozone is important for modeling dry deposition and air quality. We evaluated the stomatal component of ozone dry deposition modeled by atmospheric chemistry models at six sites. We find that models and observation-based estimates agree at times during the growing season at all sites, but some models overestimated the stomatal component during the dry summers at a seasonally dry site.
Nathalie Ylenia Triches, Jan Engel, Abdullah Bolek, Timo Vesala, Maija E. Marushchak, Anna-Maria Virkkala, Martin Heimann, and Mathias Göckede
Atmos. Meas. Tech., 18, 3407–3424, https://doi.org/10.5194/amt-18-3407-2025, https://doi.org/10.5194/amt-18-3407-2025, 2025
Short summary
Short summary
This study explores nitrous oxide (N2O) fluxes from a nutrient-poor sub-Arctic peatland. N2O is a potent greenhouse gas; understanding its fluxes is essential for addressing global warming. Using a new instrument and flux chambers, we introduce a system to reliably detect low N2O fluxes and provide recommendations on chamber closure times and flux calculation methods to better quantify N2O fluxes. We encourage researchers to further investigate N2O fluxes in low-nutrient environments.
Piaopiao Ke, Anna Lintunen, Pasi Kolari, Annalea Lohila, Santeri Tuovinen, Janne Lampilahti, Roseline Thakur, Maija Peltola, Otso Peräkylä, Tuomo Nieminen, Ekaterina Ezhova, Mari Pihlatie, Asta Laasonen, Markku Koskinen, Helena Rautakoski, Laura Heimsch, Tom Kokkonen, Aki Vähä, Ivan Mammarella, Steffen Noe, Jaana Bäck, Veli-Matti Kerminen, and Markku Kulmala
Biogeosciences, 22, 3235–3251, https://doi.org/10.5194/bg-22-3235-2025, https://doi.org/10.5194/bg-22-3235-2025, 2025
Short summary
Short summary
Our research explores diverse ecosystems’ roles in climate cooling via the concept of CarbonSink+ potential. We measured CO2 uptake and local aerosol production in forests, farms, peatlands, urban gardens, and coastal areas across Finland and Estonia. The long-term data reveal that, while forests are vital with regard to CarbonSink+ potential, farms and urban gardens also play significant roles. These insights can help optimize management policy of natural resources to mitigate global warming.
Asta Laasonen, Alexander Buzacott, Kukka-Maaria Kohonen, Erik Lundin, Alexander Meire, Mari Pihlatie, and Ivan Mammarella
EGUsphere, https://doi.org/10.5194/egusphere-2025-2094, https://doi.org/10.5194/egusphere-2025-2094, 2025
Short summary
Short summary
Carbon monoxide (CO) is an important indirect greenhouse gas, but its terrestrial sinks and sources are poorly understood. We present the first CO flux measurements using the eddy covariance method in an Arctic peatland. Our results show CO fluxes are dominated by two processes: radiation driven emissions and soil uptake. Dry peatland areas acted as CO sinks, while wetter areas were CO sources. Our findings suggest current global models may underestimate Arctic CO emissions.
Aki Vähä, Timo Vesala, Sofya Guseva, Anders Lindroth, Andreas Lorke, Sally MacIntyre, and Ivan Mammarella
Biogeosciences, 22, 1651–1671, https://doi.org/10.5194/bg-22-1651-2025, https://doi.org/10.5194/bg-22-1651-2025, 2025
Short summary
Short summary
Boreal rivers are significant sources of carbon dioxide (CO2) and methane (CH4) for the atmosphere, but the controls of these emissions are uncertain. We measured 4 months of CO2 and CH4 exchanges between a regulated boreal river and the atmosphere with eddy covariance. We found statistical relationships between the gas exchange and several environmental variables, the most important of which were dissolved CO2 partial pressure in water, wind speed and water temperature.
Benjamin Loubet, Nicolas P. Saby, Maryam Gebleh, Pauline Buysse, Jean-Philippe Chenu, Céline Ratie, Claudy Jolivet, Carmen Kalalian, Florent Levavasseur, Jose-Luis Munera-Echeverri, Sebastien Lafont, Denis Loustau, Dario Papale, Giacomo Nicolini, Bruna Winck, and Dominique Arrouays
EGUsphere, https://doi.org/10.5194/egusphere-2025-592, https://doi.org/10.5194/egusphere-2025-592, 2025
Short summary
Short summary
Soil is a large pool of carbon storing globally from two to three times more carbon than the atmosphere and vegetation. We compute the soil stock evolution from 2005 to 2019 for a wheat-maize-barley-oilseed-rape crop rotation at a French crop site. The soil carbon stock decreased by around 70 ± 16 g C m-2 yr-1 over the period, leading to a total loss of around 8 % of the initial soil stock. This strong destocking is primarily explained by a decrease in the residue return to the site.
Ekaterina Ezhova, Topi Laanti, Anna Lintunen, Pasi Kolari, Tuomo Nieminen, Ivan Mammarella, Keijo Heljanko, and Markku Kulmala
Biogeosciences, 22, 257–288, https://doi.org/10.5194/bg-22-257-2025, https://doi.org/10.5194/bg-22-257-2025, 2025
Short summary
Short summary
Machine learning (ML) models are gaining popularity in biogeosciences. They are applied as gap-filling methods and used to upscale carbon fluxes to larger areas. Here we use explainable artificial intelligence (XAI) methods to elucidate the performance of machine learning models for carbon dioxide fluxes in boreal forests. We show that statistically equal models treat input variables differently. XAI methods can help scientists make informed decisions when applying ML models in their research.
Otso Peräkylä, Erkka Rinne, Ekaterina Ezhova, Anna Lintunen, Annalea Lohila, Juho Aalto, Mika Aurela, Pasi Kolari, and Markku Kulmala
Biogeosciences, 22, 153–179, https://doi.org/10.5194/bg-22-153-2025, https://doi.org/10.5194/bg-22-153-2025, 2025
Short summary
Short summary
Forests are seen as good for climate. Yet, in areas with snow, trees break up the white snow surface and absorb more sunlight than open areas. This has a warming effect, negating some of the climate benefit of trees. We studied two site pairs in Finland, both with an open peatland and a forest. We found that the later the snow melts, the more extra energy the forest absorbs as compared to the peatland. This has implications for the future, as snow cover duration is affected by global warming.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Jiří Dušek, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo A. Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Mana Gharun, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
Biogeosciences, 21, 5079–5115, https://doi.org/10.5194/bg-21-5079-2024, https://doi.org/10.5194/bg-21-5079-2024, 2024
Short summary
Short summary
The movement of water, carbon, and energy from the Earth's surface to the atmosphere, or flux, is an important process to understand because it impacts our lives. Here, we outline a method called FLUXCOM-X to estimate global water and CO2 fluxes based on direct measurements from sites around the world. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
Biogeosciences, 21, 3015–3039, https://doi.org/10.5194/bg-21-3015-2024, https://doi.org/10.5194/bg-21-3015-2024, 2024
Short summary
Short summary
The ratio between atmospheric O2 and CO2 can be used to characterize the carbon balance at the surface. By combining a model and observations from the Hyytiälä forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange because large-scale processes such as entrainment confound this signal. We therefore recommend always using multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Jin Ma, Linda M. J. Kooijmans, Norbert Glatthor, Stephen A. Montzka, Marc von Hobe, Thomas Röckmann, and Maarten C. Krol
Atmos. Chem. Phys., 24, 6047–6070, https://doi.org/10.5194/acp-24-6047-2024, https://doi.org/10.5194/acp-24-6047-2024, 2024
Short summary
Short summary
The global budget of atmospheric COS can be optimised by inverse modelling using TM5-4DVAR, with the co-constraints of NOAA surface observations and MIPAS satellite data. We found reduced COS biosphere uptake from inversions and improved land and ocean separation using MIPAS satellite data assimilation. Further improvements are expected from better quantification of COS ocean and biosphere fluxes.
Martin Jung, Jacob Nelson, Mirco Migliavacca, Tarek El-Madany, Dario Papale, Markus Reichstein, Sophia Walther, and Thomas Wutzler
Biogeosciences, 21, 1827–1846, https://doi.org/10.5194/bg-21-1827-2024, https://doi.org/10.5194/bg-21-1827-2024, 2024
Short summary
Short summary
We present a methodology to detect inconsistencies in perhaps the most important data source for measurements of ecosystem–atmosphere carbon, water, and energy fluxes. We expect that the derived consistency flags will be relevant for data users and will help in improving our understanding of and our ability to model ecosystem–climate interactions.
Jari-Pekka Nousu, Matthieu Lafaysse, Giulia Mazzotti, Pertti Ala-aho, Hannu Marttila, Bertrand Cluzet, Mika Aurela, Annalea Lohila, Pasi Kolari, Aaron Boone, Mathieu Fructus, and Samuli Launiainen
The Cryosphere, 18, 231–263, https://doi.org/10.5194/tc-18-231-2024, https://doi.org/10.5194/tc-18-231-2024, 2024
Short summary
Short summary
The snowpack has a major impact on the land surface energy budget. Accurate simulation of the snowpack energy budget is difficult, and studies that evaluate models against energy budget observations are rare. We compared predictions from well-known models with observations of energy budgets, snow depths and soil temperatures in Finland. Our study identified contrasting strengths and limitations for the models. These results can be used for choosing the right models depending on the use cases.
Markku Kulmala, Anna Lintunen, Hanna Lappalainen, Annele Virtanen, Chao Yan, Ekaterina Ezhova, Tuomo Nieminen, Ilona Riipinen, Risto Makkonen, Johanna Tamminen, Anu-Maija Sundström, Antti Arola, Armin Hansel, Kari Lehtinen, Timo Vesala, Tuukka Petäjä, Jaana Bäck, Tom Kokkonen, and Veli-Matti Kerminen
Atmos. Chem. Phys., 23, 14949–14971, https://doi.org/10.5194/acp-23-14949-2023, https://doi.org/10.5194/acp-23-14949-2023, 2023
Short summary
Short summary
To be able to meet global grand challenges, we need comprehensive open data with proper metadata. In this opinion paper, we describe the SMEAR (Station for Measuring Earth surface – Atmosphere Relations) concept and include several examples (cases), such as new particle formation and growth, feedback loops and the effect of COVID-19, and what has been learned from these investigations. The future needs and the potential of comprehensive observations of the environment are summarized.
Matthew J. McGrath, Ana Maria Roxana Petrescu, Philippe Peylin, Robbie M. Andrew, Bradley Matthews, Frank Dentener, Juraj Balkovič, Vladislav Bastrikov, Meike Becker, Gregoire Broquet, Philippe Ciais, Audrey Fortems-Cheiney, Raphael Ganzenmüller, Giacomo Grassi, Ian Harris, Matthew Jones, Jürgen Knauer, Matthias Kuhnert, Guillaume Monteil, Saqr Munassar, Paul I. Palmer, Glen P. Peters, Chunjing Qiu, Mart-Jan Schelhaas, Oksana Tarasova, Matteo Vizzarri, Karina Winkler, Gianpaolo Balsamo, Antoine Berchet, Peter Briggs, Patrick Brockmann, Frédéric Chevallier, Giulia Conchedda, Monica Crippa, Stijn N. C. Dellaert, Hugo A. C. Denier van der Gon, Sara Filipek, Pierre Friedlingstein, Richard Fuchs, Michael Gauss, Christoph Gerbig, Diego Guizzardi, Dirk Günther, Richard A. Houghton, Greet Janssens-Maenhout, Ronny Lauerwald, Bas Lerink, Ingrid T. Luijkx, Géraud Moulas, Marilena Muntean, Gert-Jan Nabuurs, Aurélie Paquirissamy, Lucia Perugini, Wouter Peters, Roberto Pilli, Julia Pongratz, Pierre Regnier, Marko Scholze, Yusuf Serengil, Pete Smith, Efisio Solazzo, Rona L. Thompson, Francesco N. Tubiello, Timo Vesala, and Sophia Walther
Earth Syst. Sci. Data, 15, 4295–4370, https://doi.org/10.5194/essd-15-4295-2023, https://doi.org/10.5194/essd-15-4295-2023, 2023
Short summary
Short summary
Accurate estimation of fluxes of carbon dioxide from the land surface is essential for understanding future impacts of greenhouse gas emissions on the climate system. A wide variety of methods currently exist to estimate these sources and sinks. We are continuing work to develop annual comparisons of these diverse methods in order to clarify what they all actually calculate and to resolve apparent disagreement, in addition to highlighting opportunities for increased understanding.
Olivia E. Clifton, Donna Schwede, Christian Hogrefe, Jesse O. Bash, Sam Bland, Philip Cheung, Mhairi Coyle, Lisa Emberson, Johannes Flemming, Erick Fredj, Stefano Galmarini, Laurens Ganzeveld, Orestis Gazetas, Ignacio Goded, Christopher D. Holmes, László Horváth, Vincent Huijnen, Qian Li, Paul A. Makar, Ivan Mammarella, Giovanni Manca, J. William Munger, Juan L. Pérez-Camanyo, Jonathan Pleim, Limei Ran, Roberto San Jose, Sam J. Silva, Ralf Staebler, Shihan Sun, Amos P. K. Tai, Eran Tas, Timo Vesala, Tamás Weidinger, Zhiyong Wu, and Leiming Zhang
Atmos. Chem. Phys., 23, 9911–9961, https://doi.org/10.5194/acp-23-9911-2023, https://doi.org/10.5194/acp-23-9911-2023, 2023
Short summary
Short summary
A primary sink of air pollutants is dry deposition. Dry deposition estimates differ across the models used to simulate atmospheric chemistry. Here, we introduce an effort to examine dry deposition schemes from atmospheric chemistry models. We provide our approach’s rationale, document the schemes, and describe datasets used to drive and evaluate the schemes. We also launch the analysis of results by evaluating against observations and identifying the processes leading to model–model differences.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Ara Cho, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Richard Wehr, and Maarten C. Krol
Biogeosciences, 20, 2573–2594, https://doi.org/10.5194/bg-20-2573-2023, https://doi.org/10.5194/bg-20-2573-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) is a useful constraint for estimating photosynthesis. To simulate COS leaf flux better in the SiB4 model, we propose a novel temperature function for enzyme carbonic anhydrase (CA) activity and optimize conductances using observations. The optimal activity of CA occurs below 40 °C, and Ball–Woodrow–Berry parameters are slightly changed. These reduce/increase uptakes in the tropics/higher latitudes and contribute to resolving discrepancies in the COS global budget.
Anton Rusanen, Kristo Hõrrak, Lauri R. Ahonen, Tuomo Nieminen, Pasi P. Aalto, Pasi Kolari, Markku Kulmala, Tuukka Petäjä, and Heikki Junninen
Atmos. Meas. Tech., 16, 2781–2793, https://doi.org/10.5194/amt-16-2781-2023, https://doi.org/10.5194/amt-16-2781-2023, 2023
Short summary
Short summary
We present a framework for setting up SMEAR (Station for Measuring Ecosystem–Atmosphere Relations) type measurement station data flows. This framework, called SMEARcore, consists of modular open-source software components that can be chosen to suit various station configurations. The benefits of using this framework are automation of routine operations and real-time monitoring of measurement results.
Ana Maria Roxana Petrescu, Chunjing Qiu, Matthew J. McGrath, Philippe Peylin, Glen P. Peters, Philippe Ciais, Rona L. Thompson, Aki Tsuruta, Dominik Brunner, Matthias Kuhnert, Bradley Matthews, Paul I. Palmer, Oksana Tarasova, Pierre Regnier, Ronny Lauerwald, David Bastviken, Lena Höglund-Isaksson, Wilfried Winiwarter, Giuseppe Etiope, Tuula Aalto, Gianpaolo Balsamo, Vladislav Bastrikov, Antoine Berchet, Patrick Brockmann, Giancarlo Ciotoli, Giulia Conchedda, Monica Crippa, Frank Dentener, Christine D. Groot Zwaaftink, Diego Guizzardi, Dirk Günther, Jean-Matthieu Haussaire, Sander Houweling, Greet Janssens-Maenhout, Massaer Kouyate, Adrian Leip, Antti Leppänen, Emanuele Lugato, Manon Maisonnier, Alistair J. Manning, Tiina Markkanen, Joe McNorton, Marilena Muntean, Gabriel D. Oreggioni, Prabir K. Patra, Lucia Perugini, Isabelle Pison, Maarit T. Raivonen, Marielle Saunois, Arjo J. Segers, Pete Smith, Efisio Solazzo, Hanqin Tian, Francesco N. Tubiello, Timo Vesala, Guido R. van der Werf, Chris Wilson, and Sönke Zaehle
Earth Syst. Sci. Data, 15, 1197–1268, https://doi.org/10.5194/essd-15-1197-2023, https://doi.org/10.5194/essd-15-1197-2023, 2023
Short summary
Short summary
This study updates the state-of-the-art scientific overview of CH4 and N2O emissions in the EU27 and UK in Petrescu et al. (2021a). Yearly updates are needed to improve the different respective approaches and to inform on the development of formal verification systems. It integrates the most recent emission inventories, process-based model and regional/global inversions, comparing them with UNFCCC national GHG inventories, in support to policy to facilitate real-time verification procedures.
Matti Kämäräinen, Juha-Pekka Tuovinen, Markku Kulmala, Ivan Mammarella, Juha Aalto, Henriikka Vekuri, Annalea Lohila, and Anna Lintunen
Biogeosciences, 20, 897–909, https://doi.org/10.5194/bg-20-897-2023, https://doi.org/10.5194/bg-20-897-2023, 2023
Short summary
Short summary
In this study, we introduce a new method for modeling the exchange of carbon between the atmosphere and a study site located in a boreal forest in southern Finland. Our method yields more accurate results than previous approaches in this context. Accurately estimating carbon exchange is crucial for gaining a better understanding of the role of forests in regulating atmospheric carbon and addressing climate change.
Auke M. van der Woude, Remco de Kok, Naomi Smith, Ingrid T. Luijkx, Santiago Botía, Ute Karstens, Linda M. J. Kooijmans, Gerbrand Koren, Harro A. J. Meijer, Gert-Jan Steeneveld, Ida Storm, Ingrid Super, Hubertus A. Scheeren, Alex Vermeulen, and Wouter Peters
Earth Syst. Sci. Data, 15, 579–605, https://doi.org/10.5194/essd-15-579-2023, https://doi.org/10.5194/essd-15-579-2023, 2023
Short summary
Short summary
To monitor the progress towards the CO2 emission goals set out in the Paris Agreement, the European Union requires an independent validation of emitted CO2. For this validation, atmospheric measurements of CO2 can be used, together with first-guess estimates of CO2 emissions and uptake. To quickly inform end users, it is imperative that this happens in near real-time. To aid these efforts, we create estimates of European CO2 exchange at high resolution in near real time.
Kim A. P. Faassen, Linh N. T. Nguyen, Eadin R. Broekema, Bert A. M. Kers, Ivan Mammarella, Timo Vesala, Penelope A. Pickers, Andrew C. Manning, Jordi Vilà-Guerau de Arellano, Harro A. J. Meijer, Wouter Peters, and Ingrid T. Luijkx
Atmos. Chem. Phys., 23, 851–876, https://doi.org/10.5194/acp-23-851-2023, https://doi.org/10.5194/acp-23-851-2023, 2023
Short summary
Short summary
The exchange ratio (ER) between atmospheric O2 and CO2 provides a useful tracer for separately estimating photosynthesis and respiration processes in the forest carbon balance. This is highly relevant to better understand the expected biosphere sink, which determines future atmospheric CO2 levels. We therefore measured O2, CO2, and their ER above a boreal forest in Finland and investigated their diurnal behaviour for a representative day, and we show the most suitable way to determine the ER.
Joonatan Ala-Könni, Kukka-Maaria Kohonen, Matti Leppäranta, and Ivan Mammarella
Geosci. Model Dev., 15, 4739–4755, https://doi.org/10.5194/gmd-15-4739-2022, https://doi.org/10.5194/gmd-15-4739-2022, 2022
Short summary
Short summary
Properties of seasonally ice-covered lakes are not currently sufficiently included in global climate models. To fill this gap, this study evaluates three models that could be used to quantify the amount of heat that moves from and into the lake by the air above it and through evaporation of the ice cover. The results show that the complex nature of the surrounding environment as well as difficulties in accurately measuring the surface temperature of ice introduce errors to these models.
Malgorzata Golub, Wim Thiery, Rafael Marcé, Don Pierson, Inne Vanderkelen, Daniel Mercado-Bettin, R. Iestyn Woolway, Luke Grant, Eleanor Jennings, Benjamin M. Kraemer, Jacob Schewe, Fang Zhao, Katja Frieler, Matthias Mengel, Vasiliy Y. Bogomolov, Damien Bouffard, Marianne Côté, Raoul-Marie Couture, Andrey V. Debolskiy, Bram Droppers, Gideon Gal, Mingyang Guo, Annette B. G. Janssen, Georgiy Kirillin, Robert Ladwig, Madeline Magee, Tadhg Moore, Marjorie Perroud, Sebastiano Piccolroaz, Love Raaman Vinnaa, Martin Schmid, Tom Shatwell, Victor M. Stepanenko, Zeli Tan, Bronwyn Woodward, Huaxia Yao, Rita Adrian, Mathew Allan, Orlane Anneville, Lauri Arvola, Karen Atkins, Leon Boegman, Cayelan Carey, Kyle Christianson, Elvira de Eyto, Curtis DeGasperi, Maria Grechushnikova, Josef Hejzlar, Klaus Joehnk, Ian D. Jones, Alo Laas, Eleanor B. Mackay, Ivan Mammarella, Hampus Markensten, Chris McBride, Deniz Özkundakci, Miguel Potes, Karsten Rinke, Dale Robertson, James A. Rusak, Rui Salgado, Leon van der Linden, Piet Verburg, Danielle Wain, Nicole K. Ward, Sabine Wollrab, and Galina Zdorovennova
Geosci. Model Dev., 15, 4597–4623, https://doi.org/10.5194/gmd-15-4597-2022, https://doi.org/10.5194/gmd-15-4597-2022, 2022
Short summary
Short summary
Lakes and reservoirs are warming across the globe. To better understand how lakes are changing and to project their future behavior amidst various sources of uncertainty, simulations with a range of lake models are required. This in turn requires international coordination across different lake modelling teams worldwide. Here we present a protocol for and results from coordinated simulations of climate change impacts on lakes worldwide.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
Short summary
Short summary
The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
Short summary
Short summary
Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Hanna K. Lappalainen, Tuukka Petäjä, Timo Vihma, Jouni Räisänen, Alexander Baklanov, Sergey Chalov, Igor Esau, Ekaterina Ezhova, Matti Leppäranta, Dmitry Pozdnyakov, Jukka Pumpanen, Meinrat O. Andreae, Mikhail Arshinov, Eija Asmi, Jianhui Bai, Igor Bashmachnikov, Boris Belan, Federico Bianchi, Boris Biskaborn, Michael Boy, Jaana Bäck, Bin Cheng, Natalia Chubarova, Jonathan Duplissy, Egor Dyukarev, Konstantinos Eleftheriadis, Martin Forsius, Martin Heimann, Sirkku Juhola, Vladimir Konovalov, Igor Konovalov, Pavel Konstantinov, Kajar Köster, Elena Lapshina, Anna Lintunen, Alexander Mahura, Risto Makkonen, Svetlana Malkhazova, Ivan Mammarella, Stefano Mammola, Stephany Buenrostro Mazon, Outi Meinander, Eugene Mikhailov, Victoria Miles, Stanislav Myslenkov, Dmitry Orlov, Jean-Daniel Paris, Roberta Pirazzini, Olga Popovicheva, Jouni Pulliainen, Kimmo Rautiainen, Torsten Sachs, Vladimir Shevchenko, Andrey Skorokhod, Andreas Stohl, Elli Suhonen, Erik S. Thomson, Marina Tsidilina, Veli-Pekka Tynkkynen, Petteri Uotila, Aki Virkkula, Nadezhda Voropay, Tobias Wolf, Sayaka Yasunaka, Jiahua Zhang, Yubao Qiu, Aijun Ding, Huadong Guo, Valery Bondur, Nikolay Kasimov, Sergej Zilitinkevich, Veli-Matti Kerminen, and Markku Kulmala
Atmos. Chem. Phys., 22, 4413–4469, https://doi.org/10.5194/acp-22-4413-2022, https://doi.org/10.5194/acp-22-4413-2022, 2022
Short summary
Short summary
We summarize results during the last 5 years in the northern Eurasian region, especially from Russia, and introduce recent observations of the air quality in the urban environments in China. Although the scientific knowledge in these regions has increased, there are still gaps in our understanding of large-scale climate–Earth surface interactions and feedbacks. This arises from limitations in research infrastructures and integrative data analyses, hindering a comprehensive system analysis.
Dong-Gill Kim, Ben Bond-Lamberty, Youngryel Ryu, Bumsuk Seo, and Dario Papale
Biogeosciences, 19, 1435–1450, https://doi.org/10.5194/bg-19-1435-2022, https://doi.org/10.5194/bg-19-1435-2022, 2022
Short summary
Short summary
As carbon (C) and greenhouse gas (GHG) research has adopted appropriate technology and approach (AT&A), low-cost instruments, open-source software, and participatory research and their results were well accepted by scientific communities. In terms of cost, feasibility, and performance, the integration of low-cost and low-technology, participatory and networking-based research approaches can be AT&A for enhancing C and GHG research in developing countries.
Timo Vesala, Kukka-Maaria Kohonen, Linda M. J. Kooijmans, Arnaud P. Praplan, Lenka Foltýnová, Pasi Kolari, Markku Kulmala, Jaana Bäck, David Nelson, Dan Yakir, Mark Zahniser, and Ivan Mammarella
Atmos. Chem. Phys., 22, 2569–2584, https://doi.org/10.5194/acp-22-2569-2022, https://doi.org/10.5194/acp-22-2569-2022, 2022
Short summary
Short summary
Carbonyl sulfide (COS) provides new insights into carbon cycle research. We present an easy-to-use flux parameterization and the longest existing time series of forest–atmosphere COS exchange measurements, which allow us to study both seasonal and interannual variability. We observed only uptake of COS by the forest on an annual basis, with 37 % variability between years. Upscaling the boreal COS uptake using a biosphere model indicates a significant missing COS sink at high latitudes.
Anna-Maria Virkkala, Susan M. Natali, Brendan M. Rogers, Jennifer D. Watts, Kathleen Savage, Sara June Connon, Marguerite Mauritz, Edward A. G. Schuur, Darcy Peter, Christina Minions, Julia Nojeim, Roisin Commane, Craig A. Emmerton, Mathias Goeckede, Manuel Helbig, David Holl, Hiroki Iwata, Hideki Kobayashi, Pasi Kolari, Efrén López-Blanco, Maija E. Marushchak, Mikhail Mastepanov, Lutz Merbold, Frans-Jan W. Parmentier, Matthias Peichl, Torsten Sachs, Oliver Sonnentag, Masahito Ueyama, Carolina Voigt, Mika Aurela, Julia Boike, Gerardo Celis, Namyi Chae, Torben R. Christensen, M. Syndonia Bret-Harte, Sigrid Dengel, Han Dolman, Colin W. Edgar, Bo Elberling, Eugenie Euskirchen, Achim Grelle, Juha Hatakka, Elyn Humphreys, Järvi Järveoja, Ayumi Kotani, Lars Kutzbach, Tuomas Laurila, Annalea Lohila, Ivan Mammarella, Yojiro Matsuura, Gesa Meyer, Mats B. Nilsson, Steven F. Oberbauer, Sang-Jong Park, Roman Petrov, Anatoly S. Prokushkin, Christopher Schulze, Vincent L. St. Louis, Eeva-Stiina Tuittila, Juha-Pekka Tuovinen, William Quinton, Andrej Varlagin, Donatella Zona, and Viacheslav I. Zyryanov
Earth Syst. Sci. Data, 14, 179–208, https://doi.org/10.5194/essd-14-179-2022, https://doi.org/10.5194/essd-14-179-2022, 2022
Short summary
Short summary
The effects of climate warming on carbon cycling across the Arctic–boreal zone (ABZ) remain poorly understood due to the relatively limited distribution of ABZ flux sites. Fortunately, this flux network is constantly increasing, but new measurements are published in various platforms, making it challenging to understand the ABZ carbon cycle as a whole. Here, we compiled a new database of Arctic–boreal CO2 fluxes to help facilitate large-scale assessments of the ABZ carbon cycle.
Linda M. J. Kooijmans, Ara Cho, Jin Ma, Aleya Kaushik, Katherine D. Haynes, Ian Baker, Ingrid T. Luijkx, Mathijs Groenink, Wouter Peters, John B. Miller, Joseph A. Berry, Jerome Ogée, Laura K. Meredith, Wu Sun, Kukka-Maaria Kohonen, Timo Vesala, Ivan Mammarella, Huilin Chen, Felix M. Spielmann, Georg Wohlfahrt, Max Berkelhammer, Mary E. Whelan, Kadmiel Maseyk, Ulli Seibt, Roisin Commane, Richard Wehr, and Maarten Krol
Biogeosciences, 18, 6547–6565, https://doi.org/10.5194/bg-18-6547-2021, https://doi.org/10.5194/bg-18-6547-2021, 2021
Short summary
Short summary
The gas carbonyl sulfide (COS) can be used to estimate photosynthesis. To adopt this approach on regional and global scales, we need biosphere models that can simulate COS exchange. So far, such models have not been evaluated against observations. We evaluate the COS biosphere exchange of the SiB4 model against COS flux observations. We find that the model is capable of simulating key processes in COS biosphere exchange. Still, we give recommendations for further improvement of the model.
Auke J. Visser, Laurens N. Ganzeveld, Ignacio Goded, Maarten C. Krol, Ivan Mammarella, Giovanni Manca, and K. Folkert Boersma
Atmos. Chem. Phys., 21, 18393–18411, https://doi.org/10.5194/acp-21-18393-2021, https://doi.org/10.5194/acp-21-18393-2021, 2021
Short summary
Short summary
Dry deposition is an important sink for tropospheric ozone that affects ecosystem carbon uptake, but process understanding remains incomplete. We apply a common deposition representation in atmospheric chemistry models and a multi-layer canopy model to multi-year ozone deposition observations. The multi-layer canopy model performs better on diurnal timescales compared to the common approach, leading to a substantially improved simulation of ozone deposition and vegetation ozone impact metrics.
Alex Resovsky, Michel Ramonet, Leonard Rivier, Jerome Tarniewicz, Philippe Ciais, Martin Steinbacher, Ivan Mammarella, Meelis Mölder, Michal Heliasz, Dagmar Kubistin, Matthias Lindauer, Jennifer Müller-Williams, Sebastien Conil, and Richard Engelen
Atmos. Meas. Tech., 14, 6119–6135, https://doi.org/10.5194/amt-14-6119-2021, https://doi.org/10.5194/amt-14-6119-2021, 2021
Short summary
Short summary
We present a technical description of a statistical methodology for extracting synoptic- and seasonal-length anomalies from greenhouse gas time series. The definition of what represents an anomalous signal is somewhat subjective, which we touch on throughout the paper. We show, however, that the method performs reasonably well in extracting portions of time series influenced by significant North Atlantic Oscillation weather episodes and continent-wide terrestrial biospheric aberrations.
Nahid Atashi, Dariush Rahimi, Victoria A. Sinclair, Martha A. Zaidan, Anton Rusanen, Henri Vuollekoski, Markku Kulmala, Timo Vesala, and Tareq Hussein
Hydrol. Earth Syst. Sci., 25, 4719–4740, https://doi.org/10.5194/hess-25-4719-2021, https://doi.org/10.5194/hess-25-4719-2021, 2021
Short summary
Short summary
Dew formation potential during a long-term period (1979–2018) was assessed in Iran to identify dew formation zones and to investigate the impacts of long-term variation in meteorological parameters on dew formation. Six dew formation zones were identified based on cluster analysis of the time series of the simulated dew yield. The distribution of dew formation zones in Iran was closely aligned with topography and sources of moisture. The dew formation trend was significantly negative.
Pavel Alekseychik, Aino Korrensalo, Ivan Mammarella, Samuli Launiainen, Eeva-Stiina Tuittila, Ilkka Korpela, and Timo Vesala
Biogeosciences, 18, 4681–4704, https://doi.org/10.5194/bg-18-4681-2021, https://doi.org/10.5194/bg-18-4681-2021, 2021
Short summary
Short summary
Bogs of northern Eurasia represent a major type of peatland ecosystem and contain vast amounts of carbon, but carbon balance monitoring studies on bogs are scarce. The current project explores 6 years of carbon balance data obtained using the state-of-the-art eddy-covariance technique at a Finnish bog Siikaneva. The results reveal relatively low interannual variability indicative of ecosystem resilience to both cool and hot summers and provide new insights into the seasonal course of C fluxes.
Kyle B. Delwiche, Sara Helen Knox, Avni Malhotra, Etienne Fluet-Chouinard, Gavin McNicol, Sarah Feron, Zutao Ouyang, Dario Papale, Carlo Trotta, Eleonora Canfora, You-Wei Cheah, Danielle Christianson, Ma. Carmelita R. Alberto, Pavel Alekseychik, Mika Aurela, Dennis Baldocchi, Sheel Bansal, David P. Billesbach, Gil Bohrer, Rosvel Bracho, Nina Buchmann, David I. Campbell, Gerardo Celis, Jiquan Chen, Weinan Chen, Housen Chu, Higo J. Dalmagro, Sigrid Dengel, Ankur R. Desai, Matteo Detto, Han Dolman, Elke Eichelmann, Eugenie Euskirchen, Daniela Famulari, Kathrin Fuchs, Mathias Goeckede, Sébastien Gogo, Mangaliso J. Gondwe, Jordan P. Goodrich, Pia Gottschalk, Scott L. Graham, Martin Heimann, Manuel Helbig, Carole Helfter, Kyle S. Hemes, Takashi Hirano, David Hollinger, Lukas Hörtnagl, Hiroki Iwata, Adrien Jacotot, Gerald Jurasinski, Minseok Kang, Kuno Kasak, John King, Janina Klatt, Franziska Koebsch, Ken W. Krauss, Derrick Y. F. Lai, Annalea Lohila, Ivan Mammarella, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes, Trofim Maximov, Lutz Merbold, Bhaskar Mitra, Timothy H. Morin, Eiko Nemitz, Mats B. Nilsson, Shuli Niu, Walter C. Oechel, Patricia Y. Oikawa, Keisuke Ono, Matthias Peichl, Olli Peltola, Michele L. Reba, Andrew D. Richardson, William Riley, Benjamin R. K. Runkle, Youngryel Ryu, Torsten Sachs, Ayaka Sakabe, Camilo Rey Sanchez, Edward A. Schuur, Karina V. R. Schäfer, Oliver Sonnentag, Jed P. Sparks, Ellen Stuart-Haëntjens, Cove Sturtevant, Ryan C. Sullivan, Daphne J. Szutu, Jonathan E. Thom, Margaret S. Torn, Eeva-Stiina Tuittila, Jessica Turner, Masahito Ueyama, Alex C. Valach, Rodrigo Vargas, Andrej Varlagin, Alma Vazquez-Lule, Joseph G. Verfaillie, Timo Vesala, George L. Vourlitis, Eric J. Ward, Christian Wille, Georg Wohlfahrt, Guan Xhuan Wong, Zhen Zhang, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, and Robert B. Jackson
Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
Short summary
Short summary
Methane is an important greenhouse gas, yet we lack knowledge about its global emissions and drivers. We present FLUXNET-CH4, a new global collection of methane measurements and a critical resource for the research community. We use FLUXNET-CH4 data to quantify the seasonality of methane emissions from freshwater wetlands, finding that methane seasonality varies strongly with latitude. Our new database and analysis will improve wetland model accuracy and inform greenhouse gas budgets.
Toprak Aslan, Olli Peltola, Andreas Ibrom, Eiko Nemitz, Üllar Rannik, and Ivan Mammarella
Atmos. Meas. Tech., 14, 5089–5106, https://doi.org/10.5194/amt-14-5089-2021, https://doi.org/10.5194/amt-14-5089-2021, 2021
Short summary
Short summary
Vertical turbulent fluxes of gases measured by the eddy covariance (EC) technique are subject to high-frequency losses. There are different methods used to describe this low-pass filtering effect and to correct the measured fluxes. In this study, we analysed the systematic uncertainty related to this correction for various attenuation and signal-to-noise ratios. A new and robust transfer function method is finally proposed.
Olli Peltola, Toprak Aslan, Andreas Ibrom, Eiko Nemitz, Üllar Rannik, and Ivan Mammarella
Atmos. Meas. Tech., 14, 5071–5088, https://doi.org/10.5194/amt-14-5071-2021, https://doi.org/10.5194/amt-14-5071-2021, 2021
Short summary
Short summary
Gas fluxes measured by the eddy covariance (EC) technique are subject to filtering due to non-ideal instrumentation. For linear first-order systems this filtering causes also a time lag between vertical wind speed and gas signal which is additional to the gas travel time in the sampling line. The effect of this additional time lag on EC fluxes is ignored in current EC data processing routines. Here we show that this oversight biases EC fluxes and hence propose an approach to rectify this bias.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
Short summary
Short summary
We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Fabienne Maignan, Camille Abadie, Marine Remaud, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Róisín Commane, Richard Wehr, J. Elliott Campbell, Sauveur Belviso, Stephen A. Montzka, Nina Raoult, Ulli Seibt, Yoichi P. Shiga, Nicolas Vuichard, Mary E. Whelan, and Philippe Peylin
Biogeosciences, 18, 2917–2955, https://doi.org/10.5194/bg-18-2917-2021, https://doi.org/10.5194/bg-18-2917-2021, 2021
Short summary
Short summary
The assimilation of carbonyl sulfide (COS) by continental vegetation has been proposed as a proxy for gross primary production (GPP). Using a land surface and a transport model, we compare a mechanistic representation of the plant COS uptake (Berry et al., 2013) to the classical leaf relative uptake (LRU) approach linking GPP and vegetation COS fluxes. We show that at high temporal resolutions a mechanistic approach is mandatory, but at large scales the LRU approach compares similarly.
Dong-Gill Kim, Ben Bond-Lamberty, Youngryel Ryu, Bumsuk Seo, and Dario Papale
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-85, https://doi.org/10.5194/bg-2021-85, 2021
Manuscript not accepted for further review
Short summary
Short summary
While greenhouse gas (GHG) research has adopted highly advanced technology some have adopted appropriate technology and approach (AT&A) such as low-cost instrument, open source software and participatory research and their results were well accepted by scientific communities. In terms of cost, feasibility and performance, integration of low-cost and low-technology, participatory and networking based research approaches can be AT&A for enhancing GHG research in developing countries.
Olli Peltola, Karl Lapo, Ilkka Martinkauppi, Ewan O'Connor, Christoph K. Thomas, and Timo Vesala
Atmos. Meas. Tech., 14, 2409–2427, https://doi.org/10.5194/amt-14-2409-2021, https://doi.org/10.5194/amt-14-2409-2021, 2021
Short summary
Short summary
We evaluated the suitability of fiber-optic distributed temperature sensing (DTS) for observing spatial (>25 cm) and temporal (>1 s) details of airflow within and above forests. The DTS measurements could discern up to third-order moments of the flow and observe spatial details of coherent flow motions. Similar measurements are not possible with more conventional measurement techniques. Hence, the DTS measurements will provide key insights into flows close to roughness elements, e.g. trees.
Jin Ma, Linda M. J. Kooijmans, Ara Cho, Stephen A. Montzka, Norbert Glatthor, John R. Worden, Le Kuai, Elliot L. Atlas, and Maarten C. Krol
Atmos. Chem. Phys., 21, 3507–3529, https://doi.org/10.5194/acp-21-3507-2021, https://doi.org/10.5194/acp-21-3507-2021, 2021
Short summary
Short summary
Carbonyl sulfide is an important trace gas in the atmosphere and useful to estimating gross primary productivity in ecosystems, but its sources and sinks remain highly uncertain. Therefore, we applied inverse model system TM5-4DVAR to better constrain the global budget. Our finding is in line with earlier studies, pointing to missing sources in the tropics and more uptake in high latitudes. We also stress the necessity of more ground-based observations and satellite data assimilation in future.
Tamara Emmerichs, Astrid Kerkweg, Huug Ouwersloot, Silvano Fares, Ivan Mammarella, and Domenico Taraborrelli
Geosci. Model Dev., 14, 495–519, https://doi.org/10.5194/gmd-14-495-2021, https://doi.org/10.5194/gmd-14-495-2021, 2021
Short summary
Short summary
Dry deposition to vegetation is a major sink of ground-level ozone. Its parameterization in atmospheric chemistry models represents a significant source of uncertainty for global tropospheric ozone. We extended the current model parameterization with a relevant pathway and important meteorological adjustment factors. The comparison with measurements shows that this enables a more realistic model representation of ozone dry deposition velocity. Globally, annual dry deposition loss increases.
Camille Yver-Kwok, Carole Philippon, Peter Bergamaschi, Tobias Biermann, Francescopiero Calzolari, Huilin Chen, Sebastien Conil, Paolo Cristofanelli, Marc Delmotte, Juha Hatakka, Michal Heliasz, Ove Hermansen, Kateřina Komínková, Dagmar Kubistin, Nicolas Kumps, Olivier Laurent, Tuomas Laurila, Irene Lehner, Janne Levula, Matthias Lindauer, Morgan Lopez, Ivan Mammarella, Giovanni Manca, Per Marklund, Jean-Marc Metzger, Meelis Mölder, Stephen M. Platt, Michel Ramonet, Leonard Rivier, Bert Scheeren, Mahesh Kumar Sha, Paul Smith, Martin Steinbacher, Gabriela Vítková, and Simon Wyss
Atmos. Meas. Tech., 14, 89–116, https://doi.org/10.5194/amt-14-89-2021, https://doi.org/10.5194/amt-14-89-2021, 2021
Short summary
Short summary
The Integrated Carbon Observation System (ICOS) is a pan-European research infrastructure which provides harmonized and high-precision scientific data on the carbon cycle and the greenhouse gas (GHG) budget. All stations have to undergo a rigorous assessment before being labeled, i.e., receiving approval to join the network. In this paper, we present the labeling process for the ICOS atmospheric network through the 23 stations that were labeled between November 2017 and November 2019.
Dario Papale
Biogeosciences, 17, 5587–5598, https://doi.org/10.5194/bg-17-5587-2020, https://doi.org/10.5194/bg-17-5587-2020, 2020
Short summary
Short summary
FLUXNET is a large, bottom-up, self-coordinated network of sites. It provided ecosystem–atmosphere greenhouse gas fluxes from stations around the world that were used as bases for a large number of publications and studies. Today many applications require recent updates on the data to track more closely the ecosystem responses to climate change and link ground data with satellite programs. For this reason, a new organization of FLUXNET is needed, keeping as its target the FAIR principles.
Yuan Zhang, Ana Bastos, Fabienne Maignan, Daniel Goll, Olivier Boucher, Laurent Li, Alessandro Cescatti, Nicolas Vuichard, Xiuzhi Chen, Christof Ammann, M. Altaf Arain, T. Andrew Black, Bogdan Chojnicki, Tomomichi Kato, Ivan Mammarella, Leonardo Montagnani, Olivier Roupsard, Maria J. Sanz, Lukas Siebicke, Marek Urbaniak, Francesco Primo Vaccari, Georg Wohlfahrt, Will Woodgate, and Philippe Ciais
Geosci. Model Dev., 13, 5401–5423, https://doi.org/10.5194/gmd-13-5401-2020, https://doi.org/10.5194/gmd-13-5401-2020, 2020
Short summary
Short summary
We improved the ORCHIDEE LSM by distinguishing diffuse and direct light in canopy and evaluated the new model with observations from 159 sites. Compared with the old model, the new model has better sunny GPP and reproduced the diffuse light fertilization effect observed at flux sites. Our simulations also indicate different mechanisms causing the observed GPP enhancement under cloudy conditions at different times. The new model has the potential to study large-scale impacts of aerosol changes.
Cited articles
Aalto, J., Aalto, P., Keronen, P., Kolari, P., Rantala, P., Taipale, R., Kajos, M., Patokoski, J., Rinne, J., Ruuskanen, T., Leskinen, M., Laakso, H., Levula, J., Pohja, T., Siivola, E., and Kulmala, M.: SMEAR II Hyytiälä forest meteorology, greenhouse gases, air quality and soil (Version 1), University of Helsinki, Institute for Atmospheric and Earth System Research [data set], http://urn.fi/urn:nbn:fi:att:a8e81c0e-2838-4df4-9589-74a4240138f8 (last access: 9 June 2020), 2019. a
Asaf, D., Rotenberg, E., Tatarinov, F., Dicken, U., Montzka, S. A., and Yakir, D.: Ecosystem photosynthesis inferred from measurements of carbonyl sulphide flux, Nat. Geosci., 6, 186–190, https://doi.org/10.1038/NGEO1730, 2013. a, b
Aubinet, M.: Eddy covariance CO2 flux measurements in nocturnal conditions: an analysis of the problem, Ecol. Appl., 18, 1368–1378, 2008. a
Bernacchi, C., Singsaas, E., Pimentel, C., Portis Jr., A., and Long, S.: Improved temperature response functions for models of Rubisco-limited photosynthesis, Plant Cell Environ., 24, 253–259, https://doi.org/10.1111/j.1365-3040.2001.00668.x, 2001. a, b
Berry, J., Wolf, A., Campbell, J. E., Baker, I., Blake, N., Blake, D., Denning, A. S., Kawa, S. R., Montzka, S. A., Seibt, U., Stimler, K., Yakir, D., and Zhu, Z.: A coupled model of the global cycles of carbonyl sulfide and CO2: A possible new window on the carbon cycle, J. Geophys. Res.-Biogeo., 118, 842–852, https://doi.org/10.1002/jgrg.20068, 2013. a
Blonquist, J. M., Montzka, S. A., Munger, J. W., Yakir, D., Desai, A. R., Dragoni, D., Griffis, T. J., Monson, R. K., Scott, R. L., and Bowling, D. R.: The potential of carbonyl sulfide as a proxy for gross primary production at flux tower sites, J. Geophys. Res., 116, G04019, https://doi.org/10.1029/2011JG001723, 2011. a, b
Commane, R., Meredith, L., Baker, I. T., Berry, J. A., Munger, J. W., and Montzka, S. A.: Seasonal fluxes of carbonyl sulfide in a midlatitude forest, P. Natl. Acad. Sci. USA, 112, 14162–14167, https://doi.org/10.1073/pnas.1504131112, 2015. a
Desai, A., Richardson, A., Moffat, A., Kattge, J., Hollinger, D., Barr, A., Falge, E., Noormets, A., Papale, D., Reichstein, M., and Stauch, V.: Cross-site evaluation of eddy covariance GPP and RE decomposition techniques, Agr. Forest Meteorol., 148, 821–838, https://doi.org/10.1016/j.agrformet.2007.11.012, 2008. a
Dewar, R., Mauranen, A., Mäkelä, A., Hölttä, T., Medlyn, B., and Vesala, T.: New insights into the covariation of stomatal, mesophyll and hydraulic conductances from optimization models incorporating nonstomatal limitations to photosynthesis, New Phytol., 217, 571–585, https://doi.org/10.1111/nph.14848, 2018. a, b, c, d, e, f, g, h, i, j
Dewar, R., Hölttä, T., and Salmon, Y.: Exploring optimal stomatal control under alternative hypotheses for the regulation of plant sources and sinks, New Phytol., 233, 639–654, 2021. a
Dusenge, M. E., Duarte, A. G., and Way, D. A.: Plant carbon metabolism and climate change: elevated CO2 and temperature impacts on photosynthesis, photorespiration and respiration, New Phytol., 221, 32–49, 2019. a
Duursma, R. A., Kolari, P., Perämäki, M., Nikinmaa, E., Hari, P., Delzon, S., Loustau, D., Ilvesniemi, H., Pumpanen, J., and Mäkelä, A.: Predicting the decline in daily maximum transpiration rate of two pine stands during drought based on constant minimum leaf water potential and plant hydraulic conductance, Tree Physiol., 28, 265–276, 2008. a, b, c, d, e, f
Farquhar, G., von Caemmerer, S., and Berry, J.: A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149, 78–90, 1980. a
Friedlingstein, P., O'Sullivan, M., Jones, M. W., Andrew, R. M., Hauck, J., Olsen, A., Peters, G. P., Peters, W., Pongratz, J., Sitch, S., Le Quéré, C., Canadell, J. G., Ciais, P., Jackson, R. B., Alin, S., Aragão, L. E. O. C., Arneth, A., Arora, V., Bates, N. R., Becker, M., Benoit-Cattin, A., Bittig, H. C., Bopp, L., Bultan, S., Chandra, N., Chevallier, F., Chini, L. P., Evans, W., Florentie, L., Forster, P. M., Gasser, T., Gehlen, M., Gilfillan, D., Gkritzalis, T., Gregor, L., Gruber, N., Harris, I., Hartung, K., Haverd, V., Houghton, R. A., Ilyina, T., Jain, A. K., Joetzjer, E., Kadono, K., Kato, E., Kitidis, V., Korsbakken, J. I., Landschützer, P., Lefèvre, N., Lenton, A., Lienert, S., Liu, Z., Lombardozzi, D., Marland, G., Metzl, N., Munro, D. R., Nabel, J. E. M. S., Nakaoka, S.-I., Niwa, Y., O'Brien, K., Ono, T., Palmer, P. I., Pierrot, D., Poulter, B., Resplandy, L., Robertson, E., Rödenbeck, C., Schwinger, J., Séférian, R., Skjelvan, I., Smith, A. J. P., Sutton, A. J., Tanhua, T., Tans, P. P., Tian, H., Tilbrook, B., van der Werf, G., Vuichard, N., Walker, A. P., Wanninkhof, R., Watson, A. J., Willis, D., Wiltshire, A. J., Yuan, W., Yue, X., and Zaehle, S.: Global Carbon Budget 2020, Earth Syst. Sci. Data, 12, 3269–3340, https://doi.org/10.5194/essd-12-3269-2020, 2020. a
Gimeno, T. E., Saavedra, N., Ogée, J., Medlyn, B., and Wingate, L.: A novel optimization approach incorporating non-stomatal limitations predicts stomatal behaviour in species from six plant functional types, J. Exp. Bot., 70, 1639–1651, https://doi.org/10.1093/jxb/erz020, 2019. a
Hari, P. and Kulmala, M.: Station for Measuring Ecosystem–Atmosphere Relations (SMEAR II), Boreal Environ. Res., 10, 315–322, 2005. a
Ilvesniemi, H., Levula, J., Ojansuu, R., Kolari, P., Kulmala, L., Pumpanen, J., Launiainen, S., Vesala, T., and Nikinmaa, E.: Long-term measurements of the carbon balance of a boreal Scots pine dominated forest ecosystem, Boreal Environ. Res., 14, 731–753, 2009. a
Kettle, A. J., Kuhn, U., Von Hobe, M., Kesselmeier, J., and Andreae, M. O.: Global budget of atmospheric carbonyl sulfide: Temporal and spatial variations of the dominant sources and sinks, J. Geophys. Res.-Atmos., 107, 1–16, https://doi.org/10.1029/2002JD002187, 2002. a
Kohonen, K.-M., Tramontana, G., and Kolari, P.: Dataset for “Intercomparison of methods to estimate gross primary production based on CO2 and COS flux measurements”, https://doi.org/10.5281/zenodo.6940750, 2022. a
Kolari, P., Chan, T., Porcar-Castell, A., Bäck, J., Nikinmaa, E., and Juurola, E.: Field and controlled environment measurements show strong seasonal acclimation in photosynthesis and respiration potential in boreal Scots pine, Front. Plant Sci., 5, 717, https://doi.org/10.3389/fpls.2014.00717, 2014. a
Kooijmans, L. M. J., Maseyk, K., Seibt, U., Sun, W., Vesala, T., Mammarella, I., Kolari, P., Aalto, J., Franchin, A., Vecchi, R., Valli, G., and Chen, H.: Canopy uptake dominates nighttime carbonyl sulfide fluxes in a boreal forest, Atmos. Chem. Phys., 17, 11453–11465, https://doi.org/10.5194/acp-17-11453-2017, 2017. a
Kulmala, L., Pumpanen, J., Kolari, P., Dengel, S., Berninger, F., Köster, K., Matkala, L., Vanhatalo, A., Vesala, T., and Bäck, J.: Inter-and intra-annual dynamics of photosynthesis differ between forest floor vegetation and tree canopy in a subarctic Scots pine stand, Agr. Forest Meteorol., 271, 1–11, https://doi.org/10.1016/j.agrformet.2019.02.029, 2019. a, b
Lasslop, G., Reichstein, M., Papale, D., Richardson, A., Arneth, A., Barr, A., Stoy, P., and Wohlfahrt, G.: Separation of net ecosystem exchange into assimilation and respiration using a light response curve approach: critical issues and global evaluation, Glob. Change Biol., 16, 187–208, 2010. a
Lasslop, G., Migliavacca, M., Bohrer, G., Reichstein, M., Bahn, M., Ibrom, A., Jacobs, C., Kolari, P., Papale, D., Vesala, T., Wohlfahrt, G., and Cescatti, A.: On the choice of the driving temperature for eddy-covariance carbon dioxide flux partitioning, Biogeosciences, 9, 5243–5259, https://doi.org/10.5194/bg-9-5243-2012, 2012. a
Launois, T., Belviso, S., Bopp, L., Fichot, C. G., and Peylin, P.: A new model for the global biogeochemical cycle of carbonyl sulfide – Part 1: Assessment of direct marine emissions with an oceanic general circulation and biogeochemistry model, Atmos. Chem. Phys., 15, 2295–2312, https://doi.org/10.5194/acp-15-2295-2015, 2015. a
Lintunen, A., Paljakka, T., Salmon, Y., Dewar, R., Riikonen, A., and Hölttä, T.: The influence of soil temperature and water content on belowground hydraulic conductance and leaf gas exchange in mature trees of three boreal species, Plant Cell Environ., 43, 532–547, https://doi.org/10.1111/pce.13709, 2020. a, b
Luo, Y., Keenan, T., and Smith, M.: Predictability of the terrestrial carbon cycle, Glob. Change Biol., 21, 1737–1751, 2015. a
Maignan, F., Abadie, C., Remaud, M., Kooijmans, L. M. J., Kohonen, K.-M., Commane, R., Wehr, R., Campbell, J. E., Belviso, S., Montzka, S. A., Raoult, N., Seibt, U., Shiga, Y. P., Vuichard, N., Whelan, M. E., and Peylin, P.: Carbonyl sulfide: comparing a mechanistic representation of the vegetation uptake in a land surface model and the leaf relative uptake approach, Biogeosciences, 18, 2917–2955, https://doi.org/10.5194/bg-18-2917-2021, 2021. a
Mäkelä, A., Pulkkinen, M., Kolari, P., Lagergren, F., Berbigier, P., Lindroth, A., Loustau, D., Nikinmaa, E., Vesala, T., and Hari, P.: Developing an empirical model of stand GPP with the LUE approach: analysis of eddy covariance data at five contrasting conifer sites in Europe, Glob. Change Biol., 14, 92–108, 2008. a
Mammarella, I., Peltola, O., Nordbo, A., Järvi, L., and Rannik, Ü.: Quantifying the uncertainty of eddy covariance fluxes due to the use of different software packages and combinations of processing steps in two contrasting ecosystems, Atmos. Meas. Tech., 9, 4915–4933, https://doi.org/10.5194/amt-9-4915-2016, 2016. a
Medlyn, B. E., Duursma, R., Eamus, D., Ellsworth, D., Prentice, I. C., Barton, C., Crous, K., De Angelis, P., Freeman, M., and Wingate, L.: Reconciling the optimal and empirical approaches to modelling stomatal conductance, Glob. Change Biol., 17, 2134–2144, https://doi.org/10.1111/j.1365-2486.2010.02375.x, 2011. a
Montzka, S., Calvert, P., Hall, B., Elkins, J., Conway, T., Tans, P., and Sweeney, C.: On the global distribution, seasonality, and budget of atmospheric carbonyl sulfide (COS) and some similarities to CO2, J. Geophys. Res.-Atmos., 112, D09302, https://doi.org/10.1029/2006JD007665, 2007. a
Papale, D.: Ideas and perspectives: enhancing the impact of the FLUXNET network of eddy covariance sites, Biogeosciences, 17, 5587–5598, https://doi.org/10.5194/bg-17-5587-2020, 2020. a
Papale, D., Reichstein, M., Aubinet, M., Canfora, E., Bernhofer, C., Kutsch, W., Longdoz, B., Rambal, S., Valentini, R., Vesala, T., and Yakir, D.: Towards a standardized processing of Net Ecosystem Exchange measured with eddy covariance technique: algorithms and uncertainty estimation, Biogeosciences, 3, 571–583, https://doi.org/10.5194/bg-3-571-2006, 2006. a
Piao, S., Ciais, P., Friedlingstein, P., Peylin, P., Reichstein, M., Luyssaert, S., Margolis, H., Fang, J., Barr, A., Chen, A., Grelle, A., Hollinger, D., Laurila, T., Lindroth, A., Richardson, A., and Vesala, T.: Net carbon dioxide losses of northern ecosystems in response to autumn warming, Nature, 451, 49–52, https://doi.org/10.1038/nature06444, 2008. a
Polishchuk, O.: Stress-related changes in the expression and activity of plant carbonic anhydrases, Planta, 253, 1–25, https://doi.org/10.1007/s00425-020-03553-5, 2021. a
Protoschill-Krebs, G., Wilhelm, C., and Kesselmeier, J.: Consumption of carbonyl sulphide (COS) by higher plant carbonic anhydrase (CA), Atmos. Environ., 30, 3151–3156, 1996. a
Reichstein, M., Falge, E., Baldocchi, D., Papale, D., Aubinet, M., Berbigier, P., Bernhofer, C., Buchmann, N., Gilmanov, T., Granier, A., Grünwald, T., Havránková, K., Ilvesniemi, H., Janous, D., Knohl, A., Laurila, T., Lohila, A., Loustau, D., Matteucci, G., Meyers, T., Miglietta, F., Ourcival, J. M., Pumpanen, J., Rambal, S., Rotenberg, E., Sanz, M., Tenhunen, J., Seufert, G., Vaccari, F., Vesala, T., Yakir, D., and Valentini, R.: On the separation of net ecosystem exchange into assimilation and ecosystem respiration: Review and improved algorithm, Glob. Change Biol., 11, 1424–1439, https://doi.org/10.1111/j.1365-2486.2005.001002.x, 2005. a
Salmon, Y., Lintunen, A., Dayet, A., Chan, T., Dewar, R., Vesala, T., and Hölttä, T.: Leaf carbon and water status control stomatal and nonstomatal limitations of photosynthesis in trees, New Phytol., 226, 690–703, https://doi.org/10.1111/nph.16436, 2020. a, b
Sandoval-Soto, L., Stanimirov, M., von Hobe, M., Schmitt, V., Valdes, J., Wild, A., and Kesselmeier, J.: Global uptake of carbonyl sulfide (COS) by terrestrial vegetation: Estimates corrected by deposition velocities normalized to the uptake of carbon dioxide (CO2), Biogeosciences, 2, 125–132, https://doi.org/10.5194/bg-2-125-2005, 2005. a, b
Spielmann, F., Wohlfahrt, G., Hammerle, A., Kitz, F., Migliavacca, M., Alberti, G., Ibrom, A., El-Madany, T. S., Gerdel, K., Moreno, G., Kolle, O., Karl, T., Peressotti, A., and Delle Vedove, G.: Gross primary productivity of four European ecosystems constrained by joint CO2 and COS flux measurements, Geophys. Res. Lett., 46, 5284–5293, 2019. a, b, c
Stimler, K., Montzka, S. A., Berry, J. A., Rudich, Y., and Yakir, D.: Relationships between carbonyl sulfide (COS) and CO2 during leaf gas exchange, New Phytol., 186, 869–878, 2010. a
Stimler, K., Berry, J. A., and Yakir, D.: Effects of Carbonyl Sulfide and Carbonic Anhydrase on Stomatal Conductance, Plant Physiol., 158, 524–530, https://doi.org/10.1104/pp.111.185926, 2012. a
Sun, W., Kooijmans, L. M. J., Maseyk, K., Chen, H., Mammarella, I., Vesala, T., Levula, J., Keskinen, H., and Seibt, U.: Soil fluxes of carbonyl sulfide (COS), carbon monoxide, and carbon dioxide in a boreal forest in southern Finland, Atmos. Chem. Phys., 18, 1363–1378, https://doi.org/10.5194/acp-18-1363-2018, 2018a. a, b
Sun, W., Maseyk, K., Lett, C., and Seibt, U.: Stomatal control of leaf fluxes of carbonyl sulfide and CO2 in a Typha freshwater marsh, Biogeosciences, 15, 3277–3291, https://doi.org/10.5194/bg-15-3277-2018, 2018b. a
Thornley, J. and Johnson, I.: Plant and crop modelling, The Blackburn Press, ISBN-10 1930665059, 1990. a
Tramontana, G., Migliavacca, M., Jung, M., Reichstein, M., Keenan, T. F., Camps-Valls, G., Ogee, J., Verrelst, J., and Papale, D.: Partitioning net carbon dioxide fluxes into photosynthesis and respiration using neural networks, Glob. Change Biol., 26, 5235–5253, https://doi.org/10.1111/gcb.15203, 2020. a, b, c, d, e, f, g, h
Vesala, T., Kohonen, K.-M., Kooijmans, L. M. J., Praplan, A. P., Foltýnová, L., Kolari, P., Kulmala, M., Bäck, J., Nelson, D., Yakir, D., Zahniser, M., and Mammarella, I.: Long-term fluxes of carbonyl sulfide and their seasonality and interannual variability in a boreal forest, Atmos. Chem. Phys., 22, 2569–2584, https://doi.org/10.5194/acp-22-2569-2022, 2022. a, b
Whelan, M. E., Lennartz, S. T., Gimeno, T. E., Wehr, R., Wohlfahrt, G., Wang, Y., Kooijmans, L. M. J., Hilton, T. W., Belviso, S., Peylin, P., Commane, R., Sun, W., Chen, H., Kuai, L., Mammarella, I., Maseyk, K., Berkelhammer, M., Li, K.-F., Yakir, D., Zumkehr, A., Katayama, Y., Ogée, J., Spielmann, F. M., Kitz, F., Rastogi, B., Kesselmeier, J., Marshall, J., Erkkilä, K.-M., Wingate, L., Meredith, L. K., He, W., Bunk, R., Launois, T., Vesala, T., Schmidt, J. A., Fichot, C. G., Seibt, U., Saleska, S., Saltzman, E. S., Montzka, S. A., Berry, J. A., and Campbell, J. E.: Reviews and syntheses: Carbonyl sulfide as a multi-scale tracer for carbon and water cycles, Biogeosciences, 15, 3625–3657, https://doi.org/10.5194/bg-15-3625-2018, 2018. a
Wohlfahrt, G., Bahn, M., Haslwanter, A., Newesely, C., and Cernusca, A.: Estimation of daytime ecosystem respiration to determine gross primary production of a mountain meadow, Agr. Forest Meteorol., 130, 13–25, https://doi.org/10.1016/j.agrformet.2005.02.001, 2005. a, b
Yang, F., Qubaja, R., Tatarinov, F., Rotenberg, E., and Yakir, D.: Assessing canopy performance using carbonyl sulfide measurements, Glob. Change Biol., 24, 3486–3498, https://doi.org/10.1111/gcb.14145, 2018. a, b, c
Yin, X., Niu, Y., van der Putten, P., and Struik, P.: The Kok effect revisited, New Phytol., 227, 1764–1775, https://doi.org/10.1111/nph.16638, 2020. a, b
Short summary
Four different methods for quantifying photosynthesis (GPP) at ecosystem scale were tested, of which two are based on carbon dioxide (CO2) and two on carbonyl sulfide (COS) flux measurements. CO2-based methods are traditional partitioning, and a new method uses machine learning. We introduce a novel method for calculating GPP from COS fluxes, with potentially better applicability than the former methods. Both COS-based methods gave on average higher GPP estimates than the CO2-based estimates.
Four different methods for quantifying photosynthesis (GPP) at ecosystem scale were tested, of...
Altmetrics
Final-revised paper
Preprint