Articles | Volume 19, issue 17
https://doi.org/10.5194/bg-19-4067-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-19-4067-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
01 Sep 2022
Research article |
| 01 Sep 2022
| 01 Sep 2022
Intercomparison of methods to estimate gross primary production based on CO2 and COS flux measurements
Kukka-Maaria Kohonen
CORRESPONDING AUTHOR
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Roderick Dewar
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Division of Plant Sciences, Research School of Biology, The Australian National University, Canberra, ACT 2601, Australia
Gianluca Tramontana
Image Processing Laboratory (IPL), Parc Científic Universitat de València, Universitat de València, Paterna, Spain
Terrasystem s.r.l, Viterbo, Italy
Aleksanteri Mauranen
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Pasi Kolari
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Linda M. J. Kooijmans
Meteorology and Air Quality, Wageningen University and Research, Wageningen, the Netherlands
Dario Papale
DIBAF, Department for Innovation in Biological, Agro-food and Forest Systems, University of Tuscia, Viterbo, Italy
IAFES, Euro-Mediterranean Center for Climate Change (CMCC), Viterbo, Italy
Timo Vesala
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
Institute for Atmospheric and Earth System Research/Forest Sciences, University of Helsinki, Helsinki, Finland
Ivan Mammarella
Institute for Atmospheric and Earth System Research/Physics, Faculty of Science, University of Helsinki, Helsinki, Finland
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Anam M. Khan, Olivia E. Clifton, Jesse O. Bash, Sam Bland, Nathan Booth, Philip Cheung, Lisa Emberson, Johannes Flemming, Erick Fredj, Stefano Galmarini, Laurens Ganzeveld, Orestis Gazetas, Ignacio Goded, Christian Hogrefe, Christopher D. Holmes, Laszlo Horvath, Vincent Huijnen, Qian Li, Paul A. Makar, Ivan Mammarella, Giovanni Manca, J. William Munger, Juan L. Perez-Camanyo, Jonathan Pleim, Limei Ran, Roberto San Jose, Donna Schwede, Sam J. Silva, Ralf Staebler, Shihan Sun, Amos P. K. Tai, Eran Tas, Timo Vesala, Tamas Weidinger, Zhiyong Wu, Leiming Zhang, and Paul C. Stoy
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Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
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Jin Ma, Linda M. J. Kooijmans, Norbert Glatthor, Stephen A. Montzka, Marc von Hobe, Thomas Röckmann, and Maarten C. Krol
Atmos. Chem. Phys., 24, 6047–6070, https://doi.org/10.5194/acp-24-6047-2024, https://doi.org/10.5194/acp-24-6047-2024, 2024
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Martin Jung, Jacob Nelson, Mirco Migliavacca, Tarek El-Madany, Dario Papale, Markus Reichstein, Sophia Walther, and Thomas Wutzler
Biogeosciences, 21, 1827–1846, https://doi.org/10.5194/bg-21-1827-2024, https://doi.org/10.5194/bg-21-1827-2024, 2024
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The snowpack has a major impact on the land surface energy budget. Accurate simulation of the snowpack energy budget is difficult, and studies that evaluate models against energy budget observations are rare. We compared predictions from well-known models with observations of energy budgets, snow depths and soil temperatures in Finland. Our study identified contrasting strengths and limitations for the models. These results can be used for choosing the right models depending on the use cases.
Markku Kulmala, Anna Lintunen, Hanna Lappalainen, Annele Virtanen, Chao Yan, Ekaterina Ezhova, Tuomo Nieminen, Ilona Riipinen, Risto Makkonen, Johanna Tamminen, Anu-Maija Sundström, Antti Arola, Armin Hansel, Kari Lehtinen, Timo Vesala, Tuukka Petäjä, Jaana Bäck, Tom Kokkonen, and Veli-Matti Kerminen
Atmos. Chem. Phys., 23, 14949–14971, https://doi.org/10.5194/acp-23-14949-2023, https://doi.org/10.5194/acp-23-14949-2023, 2023
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To be able to meet global grand challenges, we need comprehensive open data with proper metadata. In this opinion paper, we describe the SMEAR (Station for Measuring Earth surface – Atmosphere Relations) concept and include several examples (cases), such as new particle formation and growth, feedback loops and the effect of COVID-19, and what has been learned from these investigations. The future needs and the potential of comprehensive observations of the environment are summarized.
Matthew J. McGrath, Ana Maria Roxana Petrescu, Philippe Peylin, Robbie M. Andrew, Bradley Matthews, Frank Dentener, Juraj Balkovič, Vladislav Bastrikov, Meike Becker, Gregoire Broquet, Philippe Ciais, Audrey Fortems-Cheiney, Raphael Ganzenmüller, Giacomo Grassi, Ian Harris, Matthew Jones, Jürgen Knauer, Matthias Kuhnert, Guillaume Monteil, Saqr Munassar, Paul I. Palmer, Glen P. Peters, Chunjing Qiu, Mart-Jan Schelhaas, Oksana Tarasova, Matteo Vizzarri, Karina Winkler, Gianpaolo Balsamo, Antoine Berchet, Peter Briggs, Patrick Brockmann, Frédéric Chevallier, Giulia Conchedda, Monica Crippa, Stijn N. C. Dellaert, Hugo A. C. Denier van der Gon, Sara Filipek, Pierre Friedlingstein, Richard Fuchs, Michael Gauss, Christoph Gerbig, Diego Guizzardi, Dirk Günther, Richard A. Houghton, Greet Janssens-Maenhout, Ronny Lauerwald, Bas Lerink, Ingrid T. Luijkx, Géraud Moulas, Marilena Muntean, Gert-Jan Nabuurs, Aurélie Paquirissamy, Lucia Perugini, Wouter Peters, Roberto Pilli, Julia Pongratz, Pierre Regnier, Marko Scholze, Yusuf Serengil, Pete Smith, Efisio Solazzo, Rona L. Thompson, Francesco N. Tubiello, Timo Vesala, and Sophia Walther
Earth Syst. Sci. Data, 15, 4295–4370, https://doi.org/10.5194/essd-15-4295-2023, https://doi.org/10.5194/essd-15-4295-2023, 2023
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Accurate estimation of fluxes of carbon dioxide from the land surface is essential for understanding future impacts of greenhouse gas emissions on the climate system. A wide variety of methods currently exist to estimate these sources and sinks. We are continuing work to develop annual comparisons of these diverse methods in order to clarify what they all actually calculate and to resolve apparent disagreement, in addition to highlighting opportunities for increased understanding.
Olivia E. Clifton, Donna Schwede, Christian Hogrefe, Jesse O. Bash, Sam Bland, Philip Cheung, Mhairi Coyle, Lisa Emberson, Johannes Flemming, Erick Fredj, Stefano Galmarini, Laurens Ganzeveld, Orestis Gazetas, Ignacio Goded, Christopher D. Holmes, László Horváth, Vincent Huijnen, Qian Li, Paul A. Makar, Ivan Mammarella, Giovanni Manca, J. William Munger, Juan L. Pérez-Camanyo, Jonathan Pleim, Limei Ran, Roberto San Jose, Sam J. Silva, Ralf Staebler, Shihan Sun, Amos P. K. Tai, Eran Tas, Timo Vesala, Tamás Weidinger, Zhiyong Wu, and Leiming Zhang
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A primary sink of air pollutants is dry deposition. Dry deposition estimates differ across the models used to simulate atmospheric chemistry. Here, we introduce an effort to examine dry deposition schemes from atmospheric chemistry models. We provide our approach’s rationale, document the schemes, and describe datasets used to drive and evaluate the schemes. We also launch the analysis of results by evaluating against observations and identifying the processes leading to model–model differences.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
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Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Ara Cho, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Richard Wehr, and Maarten C. Krol
Biogeosciences, 20, 2573–2594, https://doi.org/10.5194/bg-20-2573-2023, https://doi.org/10.5194/bg-20-2573-2023, 2023
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Carbonyl sulfide (COS) is a useful constraint for estimating photosynthesis. To simulate COS leaf flux better in the SiB4 model, we propose a novel temperature function for enzyme carbonic anhydrase (CA) activity and optimize conductances using observations. The optimal activity of CA occurs below 40 °C, and Ball–Woodrow–Berry parameters are slightly changed. These reduce/increase uptakes in the tropics/higher latitudes and contribute to resolving discrepancies in the COS global budget.
Anton Rusanen, Kristo Hõrrak, Lauri R. Ahonen, Tuomo Nieminen, Pasi P. Aalto, Pasi Kolari, Markku Kulmala, Tuukka Petäjä, and Heikki Junninen
Atmos. Meas. Tech., 16, 2781–2793, https://doi.org/10.5194/amt-16-2781-2023, https://doi.org/10.5194/amt-16-2781-2023, 2023
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We present a framework for setting up SMEAR (Station for Measuring Ecosystem–Atmosphere Relations) type measurement station data flows. This framework, called SMEARcore, consists of modular open-source software components that can be chosen to suit various station configurations. The benefits of using this framework are automation of routine operations and real-time monitoring of measurement results.
Ana Maria Roxana Petrescu, Chunjing Qiu, Matthew J. McGrath, Philippe Peylin, Glen P. Peters, Philippe Ciais, Rona L. Thompson, Aki Tsuruta, Dominik Brunner, Matthias Kuhnert, Bradley Matthews, Paul I. Palmer, Oksana Tarasova, Pierre Regnier, Ronny Lauerwald, David Bastviken, Lena Höglund-Isaksson, Wilfried Winiwarter, Giuseppe Etiope, Tuula Aalto, Gianpaolo Balsamo, Vladislav Bastrikov, Antoine Berchet, Patrick Brockmann, Giancarlo Ciotoli, Giulia Conchedda, Monica Crippa, Frank Dentener, Christine D. Groot Zwaaftink, Diego Guizzardi, Dirk Günther, Jean-Matthieu Haussaire, Sander Houweling, Greet Janssens-Maenhout, Massaer Kouyate, Adrian Leip, Antti Leppänen, Emanuele Lugato, Manon Maisonnier, Alistair J. Manning, Tiina Markkanen, Joe McNorton, Marilena Muntean, Gabriel D. Oreggioni, Prabir K. Patra, Lucia Perugini, Isabelle Pison, Maarit T. Raivonen, Marielle Saunois, Arjo J. Segers, Pete Smith, Efisio Solazzo, Hanqin Tian, Francesco N. Tubiello, Timo Vesala, Guido R. van der Werf, Chris Wilson, and Sönke Zaehle
Earth Syst. Sci. Data, 15, 1197–1268, https://doi.org/10.5194/essd-15-1197-2023, https://doi.org/10.5194/essd-15-1197-2023, 2023
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This study updates the state-of-the-art scientific overview of CH4 and N2O emissions in the EU27 and UK in Petrescu et al. (2021a). Yearly updates are needed to improve the different respective approaches and to inform on the development of formal verification systems. It integrates the most recent emission inventories, process-based model and regional/global inversions, comparing them with UNFCCC national GHG inventories, in support to policy to facilitate real-time verification procedures.
Matti Kämäräinen, Juha-Pekka Tuovinen, Markku Kulmala, Ivan Mammarella, Juha Aalto, Henriikka Vekuri, Annalea Lohila, and Anna Lintunen
Biogeosciences, 20, 897–909, https://doi.org/10.5194/bg-20-897-2023, https://doi.org/10.5194/bg-20-897-2023, 2023
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In this study, we introduce a new method for modeling the exchange of carbon between the atmosphere and a study site located in a boreal forest in southern Finland. Our method yields more accurate results than previous approaches in this context. Accurately estimating carbon exchange is crucial for gaining a better understanding of the role of forests in regulating atmospheric carbon and addressing climate change.
Auke M. van der Woude, Remco de Kok, Naomi Smith, Ingrid T. Luijkx, Santiago Botía, Ute Karstens, Linda M. J. Kooijmans, Gerbrand Koren, Harro A. J. Meijer, Gert-Jan Steeneveld, Ida Storm, Ingrid Super, Hubertus A. Scheeren, Alex Vermeulen, and Wouter Peters
Earth Syst. Sci. Data, 15, 579–605, https://doi.org/10.5194/essd-15-579-2023, https://doi.org/10.5194/essd-15-579-2023, 2023
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To monitor the progress towards the CO2 emission goals set out in the Paris Agreement, the European Union requires an independent validation of emitted CO2. For this validation, atmospheric measurements of CO2 can be used, together with first-guess estimates of CO2 emissions and uptake. To quickly inform end users, it is imperative that this happens in near real-time. To aid these efforts, we create estimates of European CO2 exchange at high resolution in near real time.
Kim A. P. Faassen, Linh N. T. Nguyen, Eadin R. Broekema, Bert A. M. Kers, Ivan Mammarella, Timo Vesala, Penelope A. Pickers, Andrew C. Manning, Jordi Vilà-Guerau de Arellano, Harro A. J. Meijer, Wouter Peters, and Ingrid T. Luijkx
Atmos. Chem. Phys., 23, 851–876, https://doi.org/10.5194/acp-23-851-2023, https://doi.org/10.5194/acp-23-851-2023, 2023
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The exchange ratio (ER) between atmospheric O2 and CO2 provides a useful tracer for separately estimating photosynthesis and respiration processes in the forest carbon balance. This is highly relevant to better understand the expected biosphere sink, which determines future atmospheric CO2 levels. We therefore measured O2, CO2, and their ER above a boreal forest in Finland and investigated their diurnal behaviour for a representative day, and we show the most suitable way to determine the ER.
Joonatan Ala-Könni, Kukka-Maaria Kohonen, Matti Leppäranta, and Ivan Mammarella
Geosci. Model Dev., 15, 4739–4755, https://doi.org/10.5194/gmd-15-4739-2022, https://doi.org/10.5194/gmd-15-4739-2022, 2022
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Properties of seasonally ice-covered lakes are not currently sufficiently included in global climate models. To fill this gap, this study evaluates three models that could be used to quantify the amount of heat that moves from and into the lake by the air above it and through evaporation of the ice cover. The results show that the complex nature of the surrounding environment as well as difficulties in accurately measuring the surface temperature of ice introduce errors to these models.
Malgorzata Golub, Wim Thiery, Rafael Marcé, Don Pierson, Inne Vanderkelen, Daniel Mercado-Bettin, R. Iestyn Woolway, Luke Grant, Eleanor Jennings, Benjamin M. Kraemer, Jacob Schewe, Fang Zhao, Katja Frieler, Matthias Mengel, Vasiliy Y. Bogomolov, Damien Bouffard, Marianne Côté, Raoul-Marie Couture, Andrey V. Debolskiy, Bram Droppers, Gideon Gal, Mingyang Guo, Annette B. G. Janssen, Georgiy Kirillin, Robert Ladwig, Madeline Magee, Tadhg Moore, Marjorie Perroud, Sebastiano Piccolroaz, Love Raaman Vinnaa, Martin Schmid, Tom Shatwell, Victor M. Stepanenko, Zeli Tan, Bronwyn Woodward, Huaxia Yao, Rita Adrian, Mathew Allan, Orlane Anneville, Lauri Arvola, Karen Atkins, Leon Boegman, Cayelan Carey, Kyle Christianson, Elvira de Eyto, Curtis DeGasperi, Maria Grechushnikova, Josef Hejzlar, Klaus Joehnk, Ian D. Jones, Alo Laas, Eleanor B. Mackay, Ivan Mammarella, Hampus Markensten, Chris McBride, Deniz Özkundakci, Miguel Potes, Karsten Rinke, Dale Robertson, James A. Rusak, Rui Salgado, Leon van der Linden, Piet Verburg, Danielle Wain, Nicole K. Ward, Sabine Wollrab, and Galina Zdorovennova
Geosci. Model Dev., 15, 4597–4623, https://doi.org/10.5194/gmd-15-4597-2022, https://doi.org/10.5194/gmd-15-4597-2022, 2022
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Lakes and reservoirs are warming across the globe. To better understand how lakes are changing and to project their future behavior amidst various sources of uncertainty, simulations with a range of lake models are required. This in turn requires international coordination across different lake modelling teams worldwide. Here we present a protocol for and results from coordinated simulations of climate change impacts on lakes worldwide.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Hanna K. Lappalainen, Tuukka Petäjä, Timo Vihma, Jouni Räisänen, Alexander Baklanov, Sergey Chalov, Igor Esau, Ekaterina Ezhova, Matti Leppäranta, Dmitry Pozdnyakov, Jukka Pumpanen, Meinrat O. Andreae, Mikhail Arshinov, Eija Asmi, Jianhui Bai, Igor Bashmachnikov, Boris Belan, Federico Bianchi, Boris Biskaborn, Michael Boy, Jaana Bäck, Bin Cheng, Natalia Chubarova, Jonathan Duplissy, Egor Dyukarev, Konstantinos Eleftheriadis, Martin Forsius, Martin Heimann, Sirkku Juhola, Vladimir Konovalov, Igor Konovalov, Pavel Konstantinov, Kajar Köster, Elena Lapshina, Anna Lintunen, Alexander Mahura, Risto Makkonen, Svetlana Malkhazova, Ivan Mammarella, Stefano Mammola, Stephany Buenrostro Mazon, Outi Meinander, Eugene Mikhailov, Victoria Miles, Stanislav Myslenkov, Dmitry Orlov, Jean-Daniel Paris, Roberta Pirazzini, Olga Popovicheva, Jouni Pulliainen, Kimmo Rautiainen, Torsten Sachs, Vladimir Shevchenko, Andrey Skorokhod, Andreas Stohl, Elli Suhonen, Erik S. Thomson, Marina Tsidilina, Veli-Pekka Tynkkynen, Petteri Uotila, Aki Virkkula, Nadezhda Voropay, Tobias Wolf, Sayaka Yasunaka, Jiahua Zhang, Yubao Qiu, Aijun Ding, Huadong Guo, Valery Bondur, Nikolay Kasimov, Sergej Zilitinkevich, Veli-Matti Kerminen, and Markku Kulmala
Atmos. Chem. Phys., 22, 4413–4469, https://doi.org/10.5194/acp-22-4413-2022, https://doi.org/10.5194/acp-22-4413-2022, 2022
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We summarize results during the last 5 years in the northern Eurasian region, especially from Russia, and introduce recent observations of the air quality in the urban environments in China. Although the scientific knowledge in these regions has increased, there are still gaps in our understanding of large-scale climate–Earth surface interactions and feedbacks. This arises from limitations in research infrastructures and integrative data analyses, hindering a comprehensive system analysis.
Dong-Gill Kim, Ben Bond-Lamberty, Youngryel Ryu, Bumsuk Seo, and Dario Papale
Biogeosciences, 19, 1435–1450, https://doi.org/10.5194/bg-19-1435-2022, https://doi.org/10.5194/bg-19-1435-2022, 2022
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As carbon (C) and greenhouse gas (GHG) research has adopted appropriate technology and approach (AT&A), low-cost instruments, open-source software, and participatory research and their results were well accepted by scientific communities. In terms of cost, feasibility, and performance, the integration of low-cost and low-technology, participatory and networking-based research approaches can be AT&A for enhancing C and GHG research in developing countries.
Timo Vesala, Kukka-Maaria Kohonen, Linda M. J. Kooijmans, Arnaud P. Praplan, Lenka Foltýnová, Pasi Kolari, Markku Kulmala, Jaana Bäck, David Nelson, Dan Yakir, Mark Zahniser, and Ivan Mammarella
Atmos. Chem. Phys., 22, 2569–2584, https://doi.org/10.5194/acp-22-2569-2022, https://doi.org/10.5194/acp-22-2569-2022, 2022
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Carbonyl sulfide (COS) provides new insights into carbon cycle research. We present an easy-to-use flux parameterization and the longest existing time series of forest–atmosphere COS exchange measurements, which allow us to study both seasonal and interannual variability. We observed only uptake of COS by the forest on an annual basis, with 37 % variability between years. Upscaling the boreal COS uptake using a biosphere model indicates a significant missing COS sink at high latitudes.
Anna-Maria Virkkala, Susan M. Natali, Brendan M. Rogers, Jennifer D. Watts, Kathleen Savage, Sara June Connon, Marguerite Mauritz, Edward A. G. Schuur, Darcy Peter, Christina Minions, Julia Nojeim, Roisin Commane, Craig A. Emmerton, Mathias Goeckede, Manuel Helbig, David Holl, Hiroki Iwata, Hideki Kobayashi, Pasi Kolari, Efrén López-Blanco, Maija E. Marushchak, Mikhail Mastepanov, Lutz Merbold, Frans-Jan W. Parmentier, Matthias Peichl, Torsten Sachs, Oliver Sonnentag, Masahito Ueyama, Carolina Voigt, Mika Aurela, Julia Boike, Gerardo Celis, Namyi Chae, Torben R. Christensen, M. Syndonia Bret-Harte, Sigrid Dengel, Han Dolman, Colin W. Edgar, Bo Elberling, Eugenie Euskirchen, Achim Grelle, Juha Hatakka, Elyn Humphreys, Järvi Järveoja, Ayumi Kotani, Lars Kutzbach, Tuomas Laurila, Annalea Lohila, Ivan Mammarella, Yojiro Matsuura, Gesa Meyer, Mats B. Nilsson, Steven F. Oberbauer, Sang-Jong Park, Roman Petrov, Anatoly S. Prokushkin, Christopher Schulze, Vincent L. St. Louis, Eeva-Stiina Tuittila, Juha-Pekka Tuovinen, William Quinton, Andrej Varlagin, Donatella Zona, and Viacheslav I. Zyryanov
Earth Syst. Sci. Data, 14, 179–208, https://doi.org/10.5194/essd-14-179-2022, https://doi.org/10.5194/essd-14-179-2022, 2022
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The effects of climate warming on carbon cycling across the Arctic–boreal zone (ABZ) remain poorly understood due to the relatively limited distribution of ABZ flux sites. Fortunately, this flux network is constantly increasing, but new measurements are published in various platforms, making it challenging to understand the ABZ carbon cycle as a whole. Here, we compiled a new database of Arctic–boreal CO2 fluxes to help facilitate large-scale assessments of the ABZ carbon cycle.
Linda M. J. Kooijmans, Ara Cho, Jin Ma, Aleya Kaushik, Katherine D. Haynes, Ian Baker, Ingrid T. Luijkx, Mathijs Groenink, Wouter Peters, John B. Miller, Joseph A. Berry, Jerome Ogée, Laura K. Meredith, Wu Sun, Kukka-Maaria Kohonen, Timo Vesala, Ivan Mammarella, Huilin Chen, Felix M. Spielmann, Georg Wohlfahrt, Max Berkelhammer, Mary E. Whelan, Kadmiel Maseyk, Ulli Seibt, Roisin Commane, Richard Wehr, and Maarten Krol
Biogeosciences, 18, 6547–6565, https://doi.org/10.5194/bg-18-6547-2021, https://doi.org/10.5194/bg-18-6547-2021, 2021
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The gas carbonyl sulfide (COS) can be used to estimate photosynthesis. To adopt this approach on regional and global scales, we need biosphere models that can simulate COS exchange. So far, such models have not been evaluated against observations. We evaluate the COS biosphere exchange of the SiB4 model against COS flux observations. We find that the model is capable of simulating key processes in COS biosphere exchange. Still, we give recommendations for further improvement of the model.
Auke J. Visser, Laurens N. Ganzeveld, Ignacio Goded, Maarten C. Krol, Ivan Mammarella, Giovanni Manca, and K. Folkert Boersma
Atmos. Chem. Phys., 21, 18393–18411, https://doi.org/10.5194/acp-21-18393-2021, https://doi.org/10.5194/acp-21-18393-2021, 2021
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Dry deposition is an important sink for tropospheric ozone that affects ecosystem carbon uptake, but process understanding remains incomplete. We apply a common deposition representation in atmospheric chemistry models and a multi-layer canopy model to multi-year ozone deposition observations. The multi-layer canopy model performs better on diurnal timescales compared to the common approach, leading to a substantially improved simulation of ozone deposition and vegetation ozone impact metrics.
Alex Resovsky, Michel Ramonet, Leonard Rivier, Jerome Tarniewicz, Philippe Ciais, Martin Steinbacher, Ivan Mammarella, Meelis Mölder, Michal Heliasz, Dagmar Kubistin, Matthias Lindauer, Jennifer Müller-Williams, Sebastien Conil, and Richard Engelen
Atmos. Meas. Tech., 14, 6119–6135, https://doi.org/10.5194/amt-14-6119-2021, https://doi.org/10.5194/amt-14-6119-2021, 2021
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We present a technical description of a statistical methodology for extracting synoptic- and seasonal-length anomalies from greenhouse gas time series. The definition of what represents an anomalous signal is somewhat subjective, which we touch on throughout the paper. We show, however, that the method performs reasonably well in extracting portions of time series influenced by significant North Atlantic Oscillation weather episodes and continent-wide terrestrial biospheric aberrations.
Nahid Atashi, Dariush Rahimi, Victoria A. Sinclair, Martha A. Zaidan, Anton Rusanen, Henri Vuollekoski, Markku Kulmala, Timo Vesala, and Tareq Hussein
Hydrol. Earth Syst. Sci., 25, 4719–4740, https://doi.org/10.5194/hess-25-4719-2021, https://doi.org/10.5194/hess-25-4719-2021, 2021
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Dew formation potential during a long-term period (1979–2018) was assessed in Iran to identify dew formation zones and to investigate the impacts of long-term variation in meteorological parameters on dew formation. Six dew formation zones were identified based on cluster analysis of the time series of the simulated dew yield. The distribution of dew formation zones in Iran was closely aligned with topography and sources of moisture. The dew formation trend was significantly negative.
Pavel Alekseychik, Aino Korrensalo, Ivan Mammarella, Samuli Launiainen, Eeva-Stiina Tuittila, Ilkka Korpela, and Timo Vesala
Biogeosciences, 18, 4681–4704, https://doi.org/10.5194/bg-18-4681-2021, https://doi.org/10.5194/bg-18-4681-2021, 2021
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Bogs of northern Eurasia represent a major type of peatland ecosystem and contain vast amounts of carbon, but carbon balance monitoring studies on bogs are scarce. The current project explores 6 years of carbon balance data obtained using the state-of-the-art eddy-covariance technique at a Finnish bog Siikaneva. The results reveal relatively low interannual variability indicative of ecosystem resilience to both cool and hot summers and provide new insights into the seasonal course of C fluxes.
Kyle B. Delwiche, Sara Helen Knox, Avni Malhotra, Etienne Fluet-Chouinard, Gavin McNicol, Sarah Feron, Zutao Ouyang, Dario Papale, Carlo Trotta, Eleonora Canfora, You-Wei Cheah, Danielle Christianson, Ma. Carmelita R. Alberto, Pavel Alekseychik, Mika Aurela, Dennis Baldocchi, Sheel Bansal, David P. Billesbach, Gil Bohrer, Rosvel Bracho, Nina Buchmann, David I. Campbell, Gerardo Celis, Jiquan Chen, Weinan Chen, Housen Chu, Higo J. Dalmagro, Sigrid Dengel, Ankur R. Desai, Matteo Detto, Han Dolman, Elke Eichelmann, Eugenie Euskirchen, Daniela Famulari, Kathrin Fuchs, Mathias Goeckede, Sébastien Gogo, Mangaliso J. Gondwe, Jordan P. Goodrich, Pia Gottschalk, Scott L. Graham, Martin Heimann, Manuel Helbig, Carole Helfter, Kyle S. Hemes, Takashi Hirano, David Hollinger, Lukas Hörtnagl, Hiroki Iwata, Adrien Jacotot, Gerald Jurasinski, Minseok Kang, Kuno Kasak, John King, Janina Klatt, Franziska Koebsch, Ken W. Krauss, Derrick Y. F. Lai, Annalea Lohila, Ivan Mammarella, Luca Belelli Marchesini, Giovanni Manca, Jaclyn Hatala Matthes, Trofim Maximov, Lutz Merbold, Bhaskar Mitra, Timothy H. Morin, Eiko Nemitz, Mats B. Nilsson, Shuli Niu, Walter C. Oechel, Patricia Y. Oikawa, Keisuke Ono, Matthias Peichl, Olli Peltola, Michele L. Reba, Andrew D. Richardson, William Riley, Benjamin R. K. Runkle, Youngryel Ryu, Torsten Sachs, Ayaka Sakabe, Camilo Rey Sanchez, Edward A. Schuur, Karina V. R. Schäfer, Oliver Sonnentag, Jed P. Sparks, Ellen Stuart-Haëntjens, Cove Sturtevant, Ryan C. Sullivan, Daphne J. Szutu, Jonathan E. Thom, Margaret S. Torn, Eeva-Stiina Tuittila, Jessica Turner, Masahito Ueyama, Alex C. Valach, Rodrigo Vargas, Andrej Varlagin, Alma Vazquez-Lule, Joseph G. Verfaillie, Timo Vesala, George L. Vourlitis, Eric J. Ward, Christian Wille, Georg Wohlfahrt, Guan Xhuan Wong, Zhen Zhang, Donatella Zona, Lisamarie Windham-Myers, Benjamin Poulter, and Robert B. Jackson
Earth Syst. Sci. Data, 13, 3607–3689, https://doi.org/10.5194/essd-13-3607-2021, https://doi.org/10.5194/essd-13-3607-2021, 2021
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Methane is an important greenhouse gas, yet we lack knowledge about its global emissions and drivers. We present FLUXNET-CH4, a new global collection of methane measurements and a critical resource for the research community. We use FLUXNET-CH4 data to quantify the seasonality of methane emissions from freshwater wetlands, finding that methane seasonality varies strongly with latitude. Our new database and analysis will improve wetland model accuracy and inform greenhouse gas budgets.
Toprak Aslan, Olli Peltola, Andreas Ibrom, Eiko Nemitz, Üllar Rannik, and Ivan Mammarella
Atmos. Meas. Tech., 14, 5089–5106, https://doi.org/10.5194/amt-14-5089-2021, https://doi.org/10.5194/amt-14-5089-2021, 2021
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Vertical turbulent fluxes of gases measured by the eddy covariance (EC) technique are subject to high-frequency losses. There are different methods used to describe this low-pass filtering effect and to correct the measured fluxes. In this study, we analysed the systematic uncertainty related to this correction for various attenuation and signal-to-noise ratios. A new and robust transfer function method is finally proposed.
Olli Peltola, Toprak Aslan, Andreas Ibrom, Eiko Nemitz, Üllar Rannik, and Ivan Mammarella
Atmos. Meas. Tech., 14, 5071–5088, https://doi.org/10.5194/amt-14-5071-2021, https://doi.org/10.5194/amt-14-5071-2021, 2021
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Gas fluxes measured by the eddy covariance (EC) technique are subject to filtering due to non-ideal instrumentation. For linear first-order systems this filtering causes also a time lag between vertical wind speed and gas signal which is additional to the gas travel time in the sampling line. The effect of this additional time lag on EC fluxes is ignored in current EC data processing routines. Here we show that this oversight biases EC fluxes and hence propose an approach to rectify this bias.
Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
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We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Fabienne Maignan, Camille Abadie, Marine Remaud, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Róisín Commane, Richard Wehr, J. Elliott Campbell, Sauveur Belviso, Stephen A. Montzka, Nina Raoult, Ulli Seibt, Yoichi P. Shiga, Nicolas Vuichard, Mary E. Whelan, and Philippe Peylin
Biogeosciences, 18, 2917–2955, https://doi.org/10.5194/bg-18-2917-2021, https://doi.org/10.5194/bg-18-2917-2021, 2021
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The assimilation of carbonyl sulfide (COS) by continental vegetation has been proposed as a proxy for gross primary production (GPP). Using a land surface and a transport model, we compare a mechanistic representation of the plant COS uptake (Berry et al., 2013) to the classical leaf relative uptake (LRU) approach linking GPP and vegetation COS fluxes. We show that at high temporal resolutions a mechanistic approach is mandatory, but at large scales the LRU approach compares similarly.
Dong-Gill Kim, Ben Bond-Lamberty, Youngryel Ryu, Bumsuk Seo, and Dario Papale
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-85, https://doi.org/10.5194/bg-2021-85, 2021
Manuscript not accepted for further review
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While greenhouse gas (GHG) research has adopted highly advanced technology some have adopted appropriate technology and approach (AT&A) such as low-cost instrument, open source software and participatory research and their results were well accepted by scientific communities. In terms of cost, feasibility and performance, integration of low-cost and low-technology, participatory and networking based research approaches can be AT&A for enhancing GHG research in developing countries.
Olli Peltola, Karl Lapo, Ilkka Martinkauppi, Ewan O'Connor, Christoph K. Thomas, and Timo Vesala
Atmos. Meas. Tech., 14, 2409–2427, https://doi.org/10.5194/amt-14-2409-2021, https://doi.org/10.5194/amt-14-2409-2021, 2021
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We evaluated the suitability of fiber-optic distributed temperature sensing (DTS) for observing spatial (>25 cm) and temporal (>1 s) details of airflow within and above forests. The DTS measurements could discern up to third-order moments of the flow and observe spatial details of coherent flow motions. Similar measurements are not possible with more conventional measurement techniques. Hence, the DTS measurements will provide key insights into flows close to roughness elements, e.g. trees.
Jin Ma, Linda M. J. Kooijmans, Ara Cho, Stephen A. Montzka, Norbert Glatthor, John R. Worden, Le Kuai, Elliot L. Atlas, and Maarten C. Krol
Atmos. Chem. Phys., 21, 3507–3529, https://doi.org/10.5194/acp-21-3507-2021, https://doi.org/10.5194/acp-21-3507-2021, 2021
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Carbonyl sulfide is an important trace gas in the atmosphere and useful to estimating gross primary productivity in ecosystems, but its sources and sinks remain highly uncertain. Therefore, we applied inverse model system TM5-4DVAR to better constrain the global budget. Our finding is in line with earlier studies, pointing to missing sources in the tropics and more uptake in high latitudes. We also stress the necessity of more ground-based observations and satellite data assimilation in future.
Tamara Emmerichs, Astrid Kerkweg, Huug Ouwersloot, Silvano Fares, Ivan Mammarella, and Domenico Taraborrelli
Geosci. Model Dev., 14, 495–519, https://doi.org/10.5194/gmd-14-495-2021, https://doi.org/10.5194/gmd-14-495-2021, 2021
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Dry deposition to vegetation is a major sink of ground-level ozone. Its parameterization in atmospheric chemistry models represents a significant source of uncertainty for global tropospheric ozone. We extended the current model parameterization with a relevant pathway and important meteorological adjustment factors. The comparison with measurements shows that this enables a more realistic model representation of ozone dry deposition velocity. Globally, annual dry deposition loss increases.
Camille Yver-Kwok, Carole Philippon, Peter Bergamaschi, Tobias Biermann, Francescopiero Calzolari, Huilin Chen, Sebastien Conil, Paolo Cristofanelli, Marc Delmotte, Juha Hatakka, Michal Heliasz, Ove Hermansen, Kateřina Komínková, Dagmar Kubistin, Nicolas Kumps, Olivier Laurent, Tuomas Laurila, Irene Lehner, Janne Levula, Matthias Lindauer, Morgan Lopez, Ivan Mammarella, Giovanni Manca, Per Marklund, Jean-Marc Metzger, Meelis Mölder, Stephen M. Platt, Michel Ramonet, Leonard Rivier, Bert Scheeren, Mahesh Kumar Sha, Paul Smith, Martin Steinbacher, Gabriela Vítková, and Simon Wyss
Atmos. Meas. Tech., 14, 89–116, https://doi.org/10.5194/amt-14-89-2021, https://doi.org/10.5194/amt-14-89-2021, 2021
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The Integrated Carbon Observation System (ICOS) is a pan-European research infrastructure which provides harmonized and high-precision scientific data on the carbon cycle and the greenhouse gas (GHG) budget. All stations have to undergo a rigorous assessment before being labeled, i.e., receiving approval to join the network. In this paper, we present the labeling process for the ICOS atmospheric network through the 23 stations that were labeled between November 2017 and November 2019.
Dario Papale
Biogeosciences, 17, 5587–5598, https://doi.org/10.5194/bg-17-5587-2020, https://doi.org/10.5194/bg-17-5587-2020, 2020
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FLUXNET is a large, bottom-up, self-coordinated network of sites. It provided ecosystem–atmosphere greenhouse gas fluxes from stations around the world that were used as bases for a large number of publications and studies. Today many applications require recent updates on the data to track more closely the ecosystem responses to climate change and link ground data with satellite programs. For this reason, a new organization of FLUXNET is needed, keeping as its target the FAIR principles.
Yuan Zhang, Ana Bastos, Fabienne Maignan, Daniel Goll, Olivier Boucher, Laurent Li, Alessandro Cescatti, Nicolas Vuichard, Xiuzhi Chen, Christof Ammann, M. Altaf Arain, T. Andrew Black, Bogdan Chojnicki, Tomomichi Kato, Ivan Mammarella, Leonardo Montagnani, Olivier Roupsard, Maria J. Sanz, Lukas Siebicke, Marek Urbaniak, Francesco Primo Vaccari, Georg Wohlfahrt, Will Woodgate, and Philippe Ciais
Geosci. Model Dev., 13, 5401–5423, https://doi.org/10.5194/gmd-13-5401-2020, https://doi.org/10.5194/gmd-13-5401-2020, 2020
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We improved the ORCHIDEE LSM by distinguishing diffuse and direct light in canopy and evaluated the new model with observations from 159 sites. Compared with the old model, the new model has better sunny GPP and reproduced the diffuse light fertilization effect observed at flux sites. Our simulations also indicate different mechanisms causing the observed GPP enhancement under cloudy conditions at different times. The new model has the potential to study large-scale impacts of aerosol changes.
Kukka-Maaria Kohonen, Pasi Kolari, Linda M. J. Kooijmans, Huilin Chen, Ulli Seibt, Wu Sun, and Ivan Mammarella
Atmos. Meas. Tech., 13, 3957–3975, https://doi.org/10.5194/amt-13-3957-2020, https://doi.org/10.5194/amt-13-3957-2020, 2020
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Biosphere–atmosphere gas exchange (flux) measurements of carbonyl sulfide (COS) are becoming popular for estimating biospheric photosynthesis. To compare COS flux measurements across different measurement sites, we need standardized protocols for data processing. We analyze how various data processing steps affect the calculated COS flux and how they differ from carbon dioxide (CO2) flux processing steps, and we aim to settle on a set of recommended protocols for COS flux calculation.
Xuefei Li, Outi Wahlroos, Sami Haapanala, Jukka Pumpanen, Harri Vasander, Anne Ojala, Timo Vesala, and Ivan Mammarella
Biogeosciences, 17, 3409–3425, https://doi.org/10.5194/bg-17-3409-2020, https://doi.org/10.5194/bg-17-3409-2020, 2020
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We measured CO2 and CH4 fluxes and quantified the global warming potential of different surface areas in a recently created urban wetland in Southern Finland. The ecosystem has a small net climate warming effect which was mainly contributed by the open-water areas. Our results suggest that limiting open-water areas and setting a design preference for areas of emergent vegetation in the establishment of urban wetlands can be a beneficial practice when considering solely the climate impact.
Christopher P. O. Reyer, Ramiro Silveyra Gonzalez, Klara Dolos, Florian Hartig, Ylva Hauf, Matthias Noack, Petra Lasch-Born, Thomas Rötzer, Hans Pretzsch, Henning Meesenburg, Stefan Fleck, Markus Wagner, Andreas Bolte, Tanja G. M. Sanders, Pasi Kolari, Annikki Mäkelä, Timo Vesala, Ivan Mammarella, Jukka Pumpanen, Alessio Collalti, Carlo Trotta, Giorgio Matteucci, Ettore D'Andrea, Lenka Foltýnová, Jan Krejza, Andreas Ibrom, Kim Pilegaard, Denis Loustau, Jean-Marc Bonnefond, Paul Berbigier, Delphine Picart, Sébastien Lafont, Michael Dietze, David Cameron, Massimo Vieno, Hanqin Tian, Alicia Palacios-Orueta, Victor Cicuendez, Laura Recuero, Klaus Wiese, Matthias Büchner, Stefan Lange, Jan Volkholz, Hyungjun Kim, Joanna A. Horemans, Friedrich Bohn, Jörg Steinkamp, Alexander Chikalanov, Graham P. Weedon, Justin Sheffield, Flurin Babst, Iliusi Vega del Valle, Felicitas Suckow, Simon Martel, Mats Mahnken, Martin Gutsch, and Katja Frieler
Earth Syst. Sci. Data, 12, 1295–1320, https://doi.org/10.5194/essd-12-1295-2020, https://doi.org/10.5194/essd-12-1295-2020, 2020
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Process-based vegetation models are widely used to predict local and global ecosystem dynamics and climate change impacts. Due to their complexity, they require careful parameterization and evaluation to ensure that projections are accurate and reliable. The PROFOUND Database provides a wide range of empirical data to calibrate and evaluate vegetation models that simulate climate impacts at the forest stand scale to support systematic model intercomparisons and model development in Europe.
Dean Chen, Putian Zhou, Tuomo Nieminen, Pontus Roldin, Ximeng Qi, Petri Clusius, Carlton Xavier, Lukas Pichelstorfer, Markku Kulmala, Pekka Rantala, Juho Aalto, Nina Sarnela, Pasi Kolari, Petri Keronen, Matti P. Rissanen, Metin Baykara, and Michael Boy
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2020-128, https://doi.org/10.5194/acp-2020-128, 2020
Preprint withdrawn
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Atmospheric oxidants OH, O3 and NO3 dominate the atmospheric oxidation capacity, and sulfuric acid (H2SO4) is considered as a main driver for new particle formation events. We studied how the trends of these atmospheric oxidants and H2SO4 changed in southern Finland during the past 12 years and discussed how these trends related to decreasing emissions of air pollutants in Europe. Our results showed that OH increased by 1.56 % yr−1 at daytime and NO3 decreased by 3.92 % yr−1 at nighttime.
Sheila Wachiye, Lutz Merbold, Timo Vesala, Janne Rinne, Matti Räsänen, Sonja Leitner, and Petri Pellikka
Biogeosciences, 17, 2149–2167, https://doi.org/10.5194/bg-17-2149-2020, https://doi.org/10.5194/bg-17-2149-2020, 2020
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Limited data on emissions in Africa translate into uncertainty during GHG budgeting. We studied annual CO2, N2O, and CH4 emissions in four land-use types in Kenyan savanna using static chambers and gas chromatography. CO2 emissions varied between seasons and land-use types. Soil moisture and vegetation explained the seasonal variation, while soil temperature was insignificant. N2O and CH4 emissions did not vary at all sites. Our results are useful in climate change mitigation interventions.
Chris R. Flechard, Andreas Ibrom, Ute M. Skiba, Wim de Vries, Marcel van Oijen, David R. Cameron, Nancy B. Dise, Janne F. J. Korhonen, Nina Buchmann, Arnaud Legout, David Simpson, Maria J. Sanz, Marc Aubinet, Denis Loustau, Leonardo Montagnani, Johan Neirynck, Ivan A. Janssens, Mari Pihlatie, Ralf Kiese, Jan Siemens, André-Jean Francez, Jürgen Augustin, Andrej Varlagin, Janusz Olejnik, Radosław Juszczak, Mika Aurela, Daniel Berveiller, Bogdan H. Chojnicki, Ulrich Dämmgen, Nicolas Delpierre, Vesna Djuricic, Julia Drewer, Eric Dufrêne, Werner Eugster, Yannick Fauvel, David Fowler, Arnoud Frumau, André Granier, Patrick Gross, Yannick Hamon, Carole Helfter, Arjan Hensen, László Horváth, Barbara Kitzler, Bart Kruijt, Werner L. Kutsch, Raquel Lobo-do-Vale, Annalea Lohila, Bernard Longdoz, Michal V. Marek, Giorgio Matteucci, Marta Mitosinkova, Virginie Moreaux, Albrecht Neftel, Jean-Marc Ourcival, Kim Pilegaard, Gabriel Pita, Francisco Sanz, Jan K. Schjoerring, Maria-Teresa Sebastià, Y. Sim Tang, Hilde Uggerud, Marek Urbaniak, Netty van Dijk, Timo Vesala, Sonja Vidic, Caroline Vincke, Tamás Weidinger, Sophie Zechmeister-Boltenstern, Klaus Butterbach-Bahl, Eiko Nemitz, and Mark A. Sutton
Biogeosciences, 17, 1583–1620, https://doi.org/10.5194/bg-17-1583-2020, https://doi.org/10.5194/bg-17-1583-2020, 2020
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Experimental evidence from a network of 40 monitoring sites in Europe suggests that atmospheric nitrogen deposition to forests and other semi-natural vegetation impacts the carbon sequestration rates in ecosystems, as well as the net greenhouse gas balance including other greenhouse gases such as nitrous oxide and methane. Excess nitrogen deposition in polluted areas also leads to other environmental impacts such as nitrogen leaching to groundwater and other pollutant gaseous emissions.
Chris R. Flechard, Marcel van Oijen, David R. Cameron, Wim de Vries, Andreas Ibrom, Nina Buchmann, Nancy B. Dise, Ivan A. Janssens, Johan Neirynck, Leonardo Montagnani, Andrej Varlagin, Denis Loustau, Arnaud Legout, Klaudia Ziemblińska, Marc Aubinet, Mika Aurela, Bogdan H. Chojnicki, Julia Drewer, Werner Eugster, André-Jean Francez, Radosław Juszczak, Barbara Kitzler, Werner L. Kutsch, Annalea Lohila, Bernard Longdoz, Giorgio Matteucci, Virginie Moreaux, Albrecht Neftel, Janusz Olejnik, Maria J. Sanz, Jan Siemens, Timo Vesala, Caroline Vincke, Eiko Nemitz, Sophie Zechmeister-Boltenstern, Klaus Butterbach-Bahl, Ute M. Skiba, and Mark A. Sutton
Biogeosciences, 17, 1621–1654, https://doi.org/10.5194/bg-17-1621-2020, https://doi.org/10.5194/bg-17-1621-2020, 2020
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Nitrogen deposition from the atmosphere to unfertilized terrestrial vegetation such as forests can increase carbon dioxide uptake and favour carbon sequestration by ecosystems. However the data from observational networks are difficult to interpret in terms of a carbon-to-nitrogen response, because there are a number of other confounding factors, such as climate, soil physical properties and fertility, and forest age. We propose a model-based method to untangle the different influences.
Domenico Vitale, Gerardo Fratini, Massimo Bilancia, Giacomo Nicolini, Simone Sabbatini, and Dario Papale
Biogeosciences, 17, 1367–1391, https://doi.org/10.5194/bg-17-1367-2020, https://doi.org/10.5194/bg-17-1367-2020, 2020
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This work describes a data cleaning procedure for the detection of eddy covariance fluxes affected by systematic errors. We believe that the proposed procedure can serve as a basis toward a unified quality control strategy suitable for the centralized data processing pipelines, where the use of completely data-driven and scalable procedures that guarantee high-quality standards and reproducibility of the released products constitutes an essential prerequisite.
Martin Jung, Christopher Schwalm, Mirco Migliavacca, Sophia Walther, Gustau Camps-Valls, Sujan Koirala, Peter Anthoni, Simon Besnard, Paul Bodesheim, Nuno Carvalhais, Frédéric Chevallier, Fabian Gans, Daniel S. Goll, Vanessa Haverd, Philipp Köhler, Kazuhito Ichii, Atul K. Jain, Junzhi Liu, Danica Lombardozzi, Julia E. M. S. Nabel, Jacob A. Nelson, Michael O'Sullivan, Martijn Pallandt, Dario Papale, Wouter Peters, Julia Pongratz, Christian Rödenbeck, Stephen Sitch, Gianluca Tramontana, Anthony Walker, Ulrich Weber, and Markus Reichstein
Biogeosciences, 17, 1343–1365, https://doi.org/10.5194/bg-17-1343-2020, https://doi.org/10.5194/bg-17-1343-2020, 2020
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We test the approach of producing global gridded carbon fluxes based on combining machine learning with local measurements, remote sensing and climate data. We show that we can reproduce seasonal variations in carbon assimilated by plants via photosynthesis and in ecosystem net carbon balance. The ecosystem’s mean carbon balance and carbon flux trends require cautious interpretation. The analysis paves the way for future improvements of the data-driven assessment of carbon fluxes.
Paul C. Stoy, Tarek S. El-Madany, Joshua B. Fisher, Pierre Gentine, Tobias Gerken, Stephen P. Good, Anne Klosterhalfen, Shuguang Liu, Diego G. Miralles, Oscar Perez-Priego, Angela J. Rigden, Todd H. Skaggs, Georg Wohlfahrt, Ray G. Anderson, A. Miriam J. Coenders-Gerrits, Martin Jung, Wouter H. Maes, Ivan Mammarella, Matthias Mauder, Mirco Migliavacca, Jacob A. Nelson, Rafael Poyatos, Markus Reichstein, Russell L. Scott, and Sebastian Wolf
Biogeosciences, 16, 3747–3775, https://doi.org/10.5194/bg-16-3747-2019, https://doi.org/10.5194/bg-16-3747-2019, 2019
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Key findings are the nearly optimal response of T to atmospheric water vapor pressure deficits across methods and scales. Additionally, the notion that T / ET intermittently approaches 1, which is a basis for many partitioning methods, does not hold for certain methods and ecosystems. To better constrain estimates of E and T from combined ET measurements, we propose a combination of independent measurement techniques to better constrain E and T at the ecosystem scale.
Jarmo Mäkelä, Jürgen Knauer, Mika Aurela, Andrew Black, Martin Heimann, Hideki Kobayashi, Annalea Lohila, Ivan Mammarella, Hank Margolis, Tiina Markkanen, Jouni Susiluoto, Tea Thum, Toni Viskari, Sönke Zaehle, and Tuula Aalto
Geosci. Model Dev., 12, 4075–4098, https://doi.org/10.5194/gmd-12-4075-2019, https://doi.org/10.5194/gmd-12-4075-2019, 2019
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We assess the differences of six stomatal conductance formulations, embedded into a land–vegetation model JSBACH, on 10 boreal coniferous evergreen forest sites. We calibrate the model parameters using all six functions in a multi-year experiment, as well as for a separate drought event at one of the sites, using the adaptive population importance sampler. The analysis reveals weaknesses in the stomatal conductance formulation-dependent model behaviour that we are able to partially amend.
Petri Kiuru, Anne Ojala, Ivan Mammarella, Jouni Heiskanen, Kukka-Maaria Erkkilä, Heli Miettinen, Timo Vesala, and Timo Huttula
Biogeosciences, 16, 3297–3317, https://doi.org/10.5194/bg-16-3297-2019, https://doi.org/10.5194/bg-16-3297-2019, 2019
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Many boreal lakes emit the greenhouse gas carbon dioxide (CO2) to the atmosphere. We incorporated four different gas exchange models into a physico-biochemical lake model and studied their ability to simulate lake air–water CO2 fluxes. The inclusion of refined gas exchange models in lake models that simulate carbon cycling is important to assess lake carbon budgets. However, higher estimates for inorganic carbon sources in boreal lakes are needed to balance the CO2 losses to the atmosphere.
Olli Peltola, Timo Vesala, Yao Gao, Olle Räty, Pavel Alekseychik, Mika Aurela, Bogdan Chojnicki, Ankur R. Desai, Albertus J. Dolman, Eugenie S. Euskirchen, Thomas Friborg, Mathias Göckede, Manuel Helbig, Elyn Humphreys, Robert B. Jackson, Georg Jocher, Fortunat Joos, Janina Klatt, Sara H. Knox, Natalia Kowalska, Lars Kutzbach, Sebastian Lienert, Annalea Lohila, Ivan Mammarella, Daniel F. Nadeau, Mats B. Nilsson, Walter C. Oechel, Matthias Peichl, Thomas Pypker, William Quinton, Janne Rinne, Torsten Sachs, Mateusz Samson, Hans Peter Schmid, Oliver Sonnentag, Christian Wille, Donatella Zona, and Tuula Aalto
Earth Syst. Sci. Data, 11, 1263–1289, https://doi.org/10.5194/essd-11-1263-2019, https://doi.org/10.5194/essd-11-1263-2019, 2019
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Here we develop a monthly gridded dataset of northern (> 45 N) wetland methane (CH4) emissions. The data product is derived using a random forest machine-learning technique and eddy covariance CH4 fluxes from 25 wetland sites. Annual CH4 emissions from these wetlands calculated from the derived data product are comparable to prior studies focusing on these areas. This product is an independent estimate of northern wetland CH4 emissions and hence could be used, e.g. for process model evaluation.
Elisa Männistö, Aino Korrensalo, Pavel Alekseychik, Ivan Mammarella, Olli Peltola, Timo Vesala, and Eeva-Stiina Tuittila
Biogeosciences, 16, 2409–2421, https://doi.org/10.5194/bg-16-2409-2019, https://doi.org/10.5194/bg-16-2409-2019, 2019
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We studied methane emitted as episodic bubble release (ebullition) from water and bare peat surfaces of a boreal bog over three years. There was more ebullition from water than from bare peat surfaces, and it was controlled by peat temperature, water level, atmospheric pressure and the weekly temperature sum. However, the contribution of methane bubbles to the total ecosystem methane emission was small. This new information can be used to improve process models of peatland methane dynamics.
Ekaterina Ezhova, Ilona Ylivinkka, Joel Kuusk, Kaupo Komsaare, Marko Vana, Alisa Krasnova, Steffen Noe, Mikhail Arshinov, Boris Belan, Sung-Bin Park, Jošt Valentin Lavrič, Martin Heimann, Tuukka Petäjä, Timo Vesala, Ivan Mammarella, Pasi Kolari, Jaana Bäck, Üllar Rannik, Veli-Matti Kerminen, and Markku Kulmala
Atmos. Chem. Phys., 18, 17863–17881, https://doi.org/10.5194/acp-18-17863-2018, https://doi.org/10.5194/acp-18-17863-2018, 2018
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Understanding the connections between aerosols, solar radiation and photosynthesis in terrestrial ecosystems is important for estimates of the CO2 balance in the atmosphere. Atmospheric aerosols and clouds influence solar radiation. In this study, we quantify the aerosol effect on solar radiation in boreal forests and study forest ecosystems response to this change in the radiation conditions. The analysis is based on atmospheric observations from several remote stations in Eurasian forests.
Qiaozhi Zha, Chao Yan, Heikki Junninen, Matthieu Riva, Nina Sarnela, Juho Aalto, Lauriane Quéléver, Simon Schallhart, Lubna Dada, Liine Heikkinen, Otso Peräkylä, Jun Zou, Clémence Rose, Yonghong Wang, Ivan Mammarella, Gabriel Katul, Timo Vesala, Douglas R. Worsnop, Markku Kulmala, Tuukka Petäjä, Federico Bianchi, and Mikael Ehn
Atmos. Chem. Phys., 18, 17437–17450, https://doi.org/10.5194/acp-18-17437-2018, https://doi.org/10.5194/acp-18-17437-2018, 2018
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Vertical measurements of highly oxygenated molecules (HOMs) below and above the forest canopy were performed for the first time in a boreal forest during September 2016. Our results highlight that near-ground HOM measurements may only be representative of a small fraction of the entire nocturnal boundary layer, which may sequentially influence the growth of newly formed particles and SOA formation close to ground surface, where the majority of measurements are conducted.
Leena Järvi, Üllar Rannik, Tom V. Kokkonen, Mona Kurppa, Ari Karppinen, Rostislav D. Kouznetsov, Pekka Rantala, Timo Vesala, and Curtis R. Wood
Atmos. Meas. Tech., 11, 5421–5438, https://doi.org/10.5194/amt-11-5421-2018, https://doi.org/10.5194/amt-11-5421-2018, 2018
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Identical EC systems on two sides of a building in central Helsinki were used to assess the uncertainty of the vertical fluxes on the single measurement point from July 2013 to September 2015. Sampling at only one point yielded up to 12% underestimation in the cumulative carbon fluxes; for sensible and latent heat the respective values were up to 5 and 8%. The commonly used statistics, kurtosis and skewness, are not necessarily suitable for filtering out data in a densely built urban area.
Pertti Hari, Steffen Noe, Sigrid Dengel, Jan Elbers, Bert Gielen, Veli-Matti Kerminen, Bart Kruijt, Liisa Kulmala, Anders Lindroth, Ivan Mammarella, Tuukka Petäjä, Guy Schurgers, Anni Vanhatalo, Markku Kulmala, and Jaana Bäck
Atmos. Chem. Phys., 18, 13321–13328, https://doi.org/10.5194/acp-18-13321-2018, https://doi.org/10.5194/acp-18-13321-2018, 2018
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The development of eddy-covariance measurements of ecosystem CO2 fluxes began a new era in the field studies of photosynthesis. The interpretation of the very variable CO2 fluxes in evergreen forests has been problematic especially in seasonal transition times. We apply two theoretical needle-level equations and show they can predict photosynthetic CO2 flux between the atmosphere and Scots pine forests. This has strong implications for the interpretation of the global change and boreal forests.
Gerardo Fratini, Simone Sabbatini, Kevin Ediger, Brad Riensche, George Burba, Giacomo Nicolini, Domenico Vitale, and Dario Papale
Biogeosciences, 15, 5473–5487, https://doi.org/10.5194/bg-15-5473-2018, https://doi.org/10.5194/bg-15-5473-2018, 2018
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Using a simulation study and field data, we quantify the biases that can be introduced in fluxes measured by eddy covariance (EC) if the raw high-frequency data are affected by random and systematic timing misalignments. Our study was motivated by the increasingly widespread adoption of fully digital EC systems potentially subject to such timing errors. We found biases as large as 10 %. We further propose a test to evaluate EC data logging systems for their time synchronization capabilities.
Jason A. Ducker, Christopher D. Holmes, Trevor F. Keenan, Silvano Fares, Allen H. Goldstein, Ivan Mammarella, J. William Munger, and Jordan Schnell
Biogeosciences, 15, 5395–5413, https://doi.org/10.5194/bg-15-5395-2018, https://doi.org/10.5194/bg-15-5395-2018, 2018
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We have developed an accurate method (SynFlux) to estimate ozone deposition and stomatal uptake across 103 flux tower sites (43 US, 60 Europe), where ozone concentrations and fluxes have not been measured. In all, the SynFlux public dataset provides monthly values of ozone dry deposition for 926 site years across a wide array of ecosystems. The SynFlux dataset will promote further applications to ecosystem, air quality, or climate modeling across the geoscience community.
Mary E. Whelan, Sinikka T. Lennartz, Teresa E. Gimeno, Richard Wehr, Georg Wohlfahrt, Yuting Wang, Linda M. J. Kooijmans, Timothy W. Hilton, Sauveur Belviso, Philippe Peylin, Róisín Commane, Wu Sun, Huilin Chen, Le Kuai, Ivan Mammarella, Kadmiel Maseyk, Max Berkelhammer, King-Fai Li, Dan Yakir, Andrew Zumkehr, Yoko Katayama, Jérôme Ogée, Felix M. Spielmann, Florian Kitz, Bharat Rastogi, Jürgen Kesselmeier, Julia Marshall, Kukka-Maaria Erkkilä, Lisa Wingate, Laura K. Meredith, Wei He, Rüdiger Bunk, Thomas Launois, Timo Vesala, Johan A. Schmidt, Cédric G. Fichot, Ulli Seibt, Scott Saleska, Eric S. Saltzman, Stephen A. Montzka, Joseph A. Berry, and J. Elliott Campbell
Biogeosciences, 15, 3625–3657, https://doi.org/10.5194/bg-15-3625-2018, https://doi.org/10.5194/bg-15-3625-2018, 2018
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Measurements of the trace gas carbonyl sulfide (OCS) are helpful in quantifying photosynthesis at previously unknowable temporal and spatial scales. While CO2 is both consumed and produced within ecosystems, OCS is mostly produced in the oceans or from specific industries, and destroyed in plant leaves in proportion to CO2. This review summarizes the advancements we have made in the understanding of OCS exchange and applications to vital ecosystem water and carbon cycle questions.
Maria Provenzale, Anne Ojala, Jouni Heiskanen, Kukka-Maaria Erkkilä, Ivan Mammarella, Pertti Hari, and Timo Vesala
Biogeosciences, 15, 2021–2032, https://doi.org/10.5194/bg-15-2021-2018, https://doi.org/10.5194/bg-15-2021-2018, 2018
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We extensively tested and refined a direct, high-frequency free-water CO2 measurement method to study the lake net ecosystem productivity. The method was first proposed in 2008, but neglected ever since.
With high-frequency direct methods, we can calculate the lake productivity more precisely, and parameterise its dependency on environmental variables. This helps us expand our knowledge on the carbon cycle in the water, and leads to a better integration of water bodies in carbon budgets.
Jouni Susiluoto, Maarit Raivonen, Leif Backman, Marko Laine, Jarmo Makela, Olli Peltola, Timo Vesala, and Tuula Aalto
Geosci. Model Dev., 11, 1199–1228, https://doi.org/10.5194/gmd-11-1199-2018, https://doi.org/10.5194/gmd-11-1199-2018, 2018
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Methane is an important greenhouse gas and methane emissions from wetlands contribute to the warming of the climate. Wetland methane emissions are also challenging to estimate. We analyze the performance of a new wetland emission computer model utilizing mathematical methods and using data from a wetland in southern Finland. The analysis helps to explain how wetlands produce methane and how emission modeling can be improved and uncertainties in the emission estimates reduced in future studies.
Aino Korrensalo, Elisa Männistö, Pavel Alekseychik, Ivan Mammarella, Janne Rinne, Timo Vesala, and Eeva-Stiina Tuittila
Biogeosciences, 15, 1749–1761, https://doi.org/10.5194/bg-15-1749-2018, https://doi.org/10.5194/bg-15-1749-2018, 2018
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We measured methane fluxes of a boreal bog from six different plant community types in 2012–2014. We found only little variation in methane fluxes among plant community types. Peat temperature as well as both leaf area of plant species with air channels and of all vegetation are important factors controlling the fluxes. We also detected negative net fluxes indicating methane consumption each year. Our results can be used to improve the models of peatland methane dynamics under climate change.
Olli Peltola, Maarit Raivonen, Xuefei Li, and Timo Vesala
Biogeosciences, 15, 937–951, https://doi.org/10.5194/bg-15-937-2018, https://doi.org/10.5194/bg-15-937-2018, 2018
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Emission via bubbling, i.e. ebullition, is one of the main CH4 emission pathways from wetlands to the atmosphere, yet it is still coarsely represented in wetland CH4 models. In this study three ebullition modelling approaches are evaluated. Modeled annual CH4 emissions were similar, whereas temporal variability in CH4 emissions varied an order of magnitude between the approaches. Hence realistic description of ebullition is needed when models are compared to and calibrated against measurements.
Chunjing Qiu, Dan Zhu, Philippe Ciais, Bertrand Guenet, Gerhard Krinner, Shushi Peng, Mika Aurela, Christian Bernhofer, Christian Brümmer, Syndonia Bret-Harte, Housen Chu, Jiquan Chen, Ankur R. Desai, Jiří Dušek, Eugénie S. Euskirchen, Krzysztof Fortuniak, Lawrence B. Flanagan, Thomas Friborg, Mateusz Grygoruk, Sébastien Gogo, Thomas Grünwald, Birger U. Hansen, David Holl, Elyn Humphreys, Miriam Hurkuck, Gerard Kiely, Janina Klatt, Lars Kutzbach, Chloé Largeron, Fatima Laggoun-Défarge, Magnus Lund, Peter M. Lafleur, Xuefei Li, Ivan Mammarella, Lutz Merbold, Mats B. Nilsson, Janusz Olejnik, Mikaell Ottosson-Löfvenius, Walter Oechel, Frans-Jan W. Parmentier, Matthias Peichl, Norbert Pirk, Olli Peltola, Włodzimierz Pawlak, Daniel Rasse, Janne Rinne, Gaius Shaver, Hans Peter Schmid, Matteo Sottocornola, Rainer Steinbrecher, Torsten Sachs, Marek Urbaniak, Donatella Zona, and Klaudia Ziemblinska
Geosci. Model Dev., 11, 497–519, https://doi.org/10.5194/gmd-11-497-2018, https://doi.org/10.5194/gmd-11-497-2018, 2018
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Northern peatlands store large amount of soil carbon and are vulnerable to climate change. We implemented peatland hydrological and carbon accumulation processes into the ORCHIDEE land surface model. The model was evaluated against EC measurements from 30 northern peatland sites. The model generally well reproduced the spatial gradient and temporal variations in GPP and NEE at these sites. Water table depth was not well predicted but had only small influence on simulated NEE.
Wu Sun, Linda M. J. Kooijmans, Kadmiel Maseyk, Huilin Chen, Ivan Mammarella, Timo Vesala, Janne Levula, Helmi Keskinen, and Ulli Seibt
Atmos. Chem. Phys., 18, 1363–1378, https://doi.org/10.5194/acp-18-1363-2018, https://doi.org/10.5194/acp-18-1363-2018, 2018
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Most soils consume carbonyl sulfide (COS) and CO due to microbial uptake, but whether boreal forest soils act like this is uncertain. We measured growing season soil COS and CO fluxes in a Finnish pine forest. The soil behaved as a consistent and relatively invariant sink of COS and CO. Uptake rates of COS and CO decrease with soil moisture due to diffusion limitation and increase with respiration because of microbial control. Using COS to infer photosynthesis is not affected by soil COS flux.
Mikko Peltoniemi, Mika Aurela, Kristin Böttcher, Pasi Kolari, John Loehr, Jouni Karhu, Maiju Linkosalmi, Cemal Melih Tanis, Juha-Pekka Tuovinen, and Ali Nadir Arslan
Earth Syst. Sci. Data, 10, 173–184, https://doi.org/10.5194/essd-10-173-2018, https://doi.org/10.5194/essd-10-173-2018, 2018
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Monitoring ecosystems using low-cost time lapse cameras has gained wide interest among researchers worldwide. Quantitative information stored in image pixels can be analysed automatically to track time-dependent phenomena, e.g. seasonal course of leaves in the canopies or snow on ground. As such, cameras can provide valuable ground references to earth observation. Here we document the ecosystem camera network we established to Finland and publish time series of images recorded between 2014–2016.
Simon Schallhart, Pekka Rantala, Maija K. Kajos, Juho Aalto, Ivan Mammarella, Taina M. Ruuskanen, and Markku Kulmala
Atmos. Chem. Phys., 18, 815–832, https://doi.org/10.5194/acp-18-815-2018, https://doi.org/10.5194/acp-18-815-2018, 2018
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Emissions of volatile organic compounds (VOCs) have impact to air quality, human health and climate. We investigated the development of VOC exchange in a boreal forest between April and June 2013. VOC exchange and diversity increased towards summer, but over 75 % of the biogenic net exchange was driven by methanol, monoterpenes and acetone only. The boreal forest emitted less than 0.2 % carbon in form of VOCs in relation to the carbon uptake.
Kukka-Maaria Erkkilä, Anne Ojala, David Bastviken, Tobias Biermann, Jouni J. Heiskanen, Anders Lindroth, Olli Peltola, Miitta Rantakari, Timo Vesala, and Ivan Mammarella
Biogeosciences, 15, 429–445, https://doi.org/10.5194/bg-15-429-2018, https://doi.org/10.5194/bg-15-429-2018, 2018
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Global estimates of freshwater greenhouse gas emissions are usually based on simple gas transfer models that underestimate the emissions. Thus, comparison of different gas transfer models is required for evaluating the uncertainties. This study compares three commonly used methods for estimating greenhouse gas emissions over lakes. We conclude that simple gas transfer models underestimate the emissions and more recent models should be used for global freshwater greenhouse gas emission estimates.
Maarit Raivonen, Sampo Smolander, Leif Backman, Jouni Susiluoto, Tuula Aalto, Tiina Markkanen, Jarmo Mäkelä, Janne Rinne, Olli Peltola, Mika Aurela, Annalea Lohila, Marin Tomasic, Xuefei Li, Tuula Larmola, Sari Juutinen, Eeva-Stiina Tuittila, Martin Heimann, Sanna Sevanto, Thomas Kleinen, Victor Brovkin, and Timo Vesala
Geosci. Model Dev., 10, 4665–4691, https://doi.org/10.5194/gmd-10-4665-2017, https://doi.org/10.5194/gmd-10-4665-2017, 2017
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Wetlands are one of the most significant natural sources of the strong greenhouse gas methane. We developed a model that can be used within a larger wetland carbon model to simulate the methane emissions. In this study, we present the model and results of its testing. We found that the model works well with different settings and that the results depend primarily on the rate of input anoxic soil respiration and also on factors that affect the simulated oxygen concentrations in the wetland soil.
Mikko Auvinen, Leena Järvi, Antti Hellsten, Üllar Rannik, and Timo Vesala
Geosci. Model Dev., 10, 4187–4205, https://doi.org/10.5194/gmd-10-4187-2017, https://doi.org/10.5194/gmd-10-4187-2017, 2017
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Correct spatial interpretation of a micrometeorological measurement requires the determination of its effective source area, or footprint. In urban areas the use of analytical models becomes highly questionable. This work introduces a computational methodology that enables the generation of footprints for complex urban sites. The methodology is based on conducting high-resolution flow and particle analysis on a model that features a detailed topographic description of a real city environment.
Yao Gao, Tiina Markkanen, Mika Aurela, Ivan Mammarella, Tea Thum, Aki Tsuruta, Huiyi Yang, and Tuula Aalto
Biogeosciences, 14, 4409–4422, https://doi.org/10.5194/bg-14-4409-2017, https://doi.org/10.5194/bg-14-4409-2017, 2017
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We investigated the response of water use efficiency (WUE) to summer drought in a boreal Scots pine forest (Pinus sylvestris) on the daily time scale mainly using EC flux data from the Hyytiälä (southern Finland) flux site. Simulation results from the JSBACH land surface model were also evaluated against the observed results. The performance of three WUE metrics at the ecosystem level (EWUE, IWUE, and uWUE) during the severe summer drought were studied and showed different results.
Linda M. J. Kooijmans, Kadmiel Maseyk, Ulli Seibt, Wu Sun, Timo Vesala, Ivan Mammarella, Pasi Kolari, Juho Aalto, Alessandro Franchin, Roberta Vecchi, Gianluigi Valli, and Huilin Chen
Atmos. Chem. Phys., 17, 11453–11465, https://doi.org/10.5194/acp-17-11453-2017, https://doi.org/10.5194/acp-17-11453-2017, 2017
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Carbon cycle studies rely on the accuracy of models to estimate the amount of CO2 being taken up by vegetation. The gas carbonyl sulfide (COS) can serve as a tool to estimate the vegetative CO2 uptake by scaling the ecosystem uptake of COS to that of CO2. Here we investigate the nighttime fluxes of COS. The relationships found in this study will aid in implementing nighttime COS uptake in models, which is key to obtain accurate estimates of vegetative CO2 uptake with the use of COS.
Miguel D. Mahecha, Fabian Gans, Sebastian Sippel, Jonathan F. Donges, Thomas Kaminski, Stefan Metzger, Mirco Migliavacca, Dario Papale, Anja Rammig, and Jakob Zscheischler
Biogeosciences, 14, 4255–4277, https://doi.org/10.5194/bg-14-4255-2017, https://doi.org/10.5194/bg-14-4255-2017, 2017
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We investigate the likelihood of ecological in situ networks to detect and monitor the impact of extreme events in the terrestrial biosphere.
Jakob Zscheischler, Miguel D. Mahecha, Valerio Avitabile, Leonardo Calle, Nuno Carvalhais, Philippe Ciais, Fabian Gans, Nicolas Gruber, Jens Hartmann, Martin Herold, Kazuhito Ichii, Martin Jung, Peter Landschützer, Goulven G. Laruelle, Ronny Lauerwald, Dario Papale, Philippe Peylin, Benjamin Poulter, Deepak Ray, Pierre Regnier, Christian Rödenbeck, Rosa M. Roman-Cuesta, Christopher Schwalm, Gianluca Tramontana, Alexandra Tyukavina, Riccardo Valentini, Guido van der Werf, Tristram O. West, Julie E. Wolf, and Markus Reichstein
Biogeosciences, 14, 3685–3703, https://doi.org/10.5194/bg-14-3685-2017, https://doi.org/10.5194/bg-14-3685-2017, 2017
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Here we synthesize a wide range of global spatiotemporal observational data on carbon exchanges between the Earth surface and the atmosphere. A key challenge was to consistently combining observational products of terrestrial and aquatic surfaces. Our primary goal is to identify today’s key uncertainties and observational shortcomings that would need to be addressed in future measurement campaigns or expansions of in situ observatories.
Pavel Alekseychik, Ivan Mammarella, Dmitry Karpov, Sigrid Dengel, Irina Terentieva, Alexander Sabrekov, Mikhail Glagolev, and Elena Lapshina
Atmos. Chem. Phys., 17, 9333–9345, https://doi.org/10.5194/acp-17-9333-2017, https://doi.org/10.5194/acp-17-9333-2017, 2017
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West Siberian peatlands occupy a large fraction of land area in the region, and yet little is known about their interaction with the atmosphere. We took the first measurements of CO2 and energy surface balances over a typical bog of West Siberian middle taiga, in the vicinity of the Mukhrino field station (Khanty–Mansiysk). The May–August study in a wet year (2015) revealed a relatively large photosynthetic sink of CO2 that was close to the high end of estimates at bog sites elsewhere.
Tea Thum, Sönke Zaehle, Philipp Köhler, Tuula Aalto, Mika Aurela, Luis Guanter, Pasi Kolari, Tuomas Laurila, Annalea Lohila, Federico Magnani, Christiaan Van Der Tol, and Tiina Markkanen
Biogeosciences, 14, 1969–1987, https://doi.org/10.5194/bg-14-1969-2017, https://doi.org/10.5194/bg-14-1969-2017, 2017
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Modelling seasonal cycle at the coniferous forests poses a challenge. We implemented a model for sun-induced chlorophyll fluorescence (SIF) to a land surface model JSBACH. It was used to study the seasonality of the carbon cycle in the Fenno-Scandinavian region. Comparison was made to direct CO2 flux measurements and satellite observations of SIF. SIF proved to be a better proxy for photosynthesis than the fraction of absorbed photosynthetically active radiation.
Antti-Jussi Kieloaho, Mari Pihlatie, Samuli Launiainen, Markku Kulmala, Marja-Liisa Riekkola, Jevgeni Parshintsev, Ivan Mammarella, Timo Vesala, and Jussi Heinonsalo
Biogeosciences, 14, 1075–1091, https://doi.org/10.5194/bg-14-1075-2017, https://doi.org/10.5194/bg-14-1075-2017, 2017
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The alkylamines are important precursors in secondary aerosol formation in boreal forests. We quantified alkylamine concentrations in fungal species present in boreal forests in order to estimate soil as a source of atmospheric alkylamines. Based on our knowledge we estimated possible soil–atmosphere exchange of these compounds. The results shows that the boreal forest soil could act as a source of alkylamines depending on environmental conditions and studied compound.
Putian Zhou, Laurens Ganzeveld, Üllar Rannik, Luxi Zhou, Rosa Gierens, Ditte Taipale, Ivan Mammarella, and Michael Boy
Atmos. Chem. Phys., 17, 1361–1379, https://doi.org/10.5194/acp-17-1361-2017, https://doi.org/10.5194/acp-17-1361-2017, 2017
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We implemented a multi-layer O3 dry deposition model in a 1-D model SOSAA to simulate O3 flux and concentration within and above a boreal forest at SMEAR II in Hyytiälä, Finland, in August 2010. The results showed that when RH > 70 % the O3 uptake on leaf wet skin was ~ 51 % to the total deposition at night and ~ 19 % at daytime. The sub-canopy contribution below 4.2 m was ~ 38 % at daytime. The averaged daily chemical contribution to total O3 alteration inside the canopy was less than 10 %.
Aino Korrensalo, Pavel Alekseychik, Tomáš Hájek, Janne Rinne, Timo Vesala, Lauri Mehtätalo, Ivan Mammarella, and Eeva-Stiina Tuittila
Biogeosciences, 14, 257–269, https://doi.org/10.5194/bg-14-257-2017, https://doi.org/10.5194/bg-14-257-2017, 2017
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Photosynthetic parameters of peatland plant species were measured over one growing season in an ombrotrophic bog. Based on these measurements, ecosystem-level photosynthesis was calculated for the whole growing season and compared with an estimate derived from micrometeorological measurements. These two estimates corresponded well. Species with low areal cover at the site but high photosynthetic efficiency appeared to be potentially important for the ecosystem-level carbon balance.
Jarmo Mäkelä, Jouni Susiluoto, Tiina Markkanen, Mika Aurela, Heikki Järvinen, Ivan Mammarella, Stefan Hagemann, and Tuula Aalto
Nonlin. Processes Geophys., 23, 447–465, https://doi.org/10.5194/npg-23-447-2016, https://doi.org/10.5194/npg-23-447-2016, 2016
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The land-based hydrological cycle is one of the key processes controlling the growth and wilting of plants and the amount of carbon vegetation can assimilate. Recent studies have shown that many land surface models have biases in this area. We optimized parameters in one such model (JSBACH) and were able to enhance the model performance in many respects, but the response to drought remained unaffected. Further studies into this aspect should include alternative stomatal conductance formulations.
Hanna K. Lappalainen, Veli-Matti Kerminen, Tuukka Petäjä, Theo Kurten, Aleksander Baklanov, Anatoly Shvidenko, Jaana Bäck, Timo Vihma, Pavel Alekseychik, Meinrat O. Andreae, Stephen R. Arnold, Mikhail Arshinov, Eija Asmi, Boris Belan, Leonid Bobylev, Sergey Chalov, Yafang Cheng, Natalia Chubarova, Gerrit de Leeuw, Aijun Ding, Sergey Dobrolyubov, Sergei Dubtsov, Egor Dyukarev, Nikolai Elansky, Kostas Eleftheriadis, Igor Esau, Nikolay Filatov, Mikhail Flint, Congbin Fu, Olga Glezer, Aleksander Gliko, Martin Heimann, Albert A. M. Holtslag, Urmas Hõrrak, Juha Janhunen, Sirkku Juhola, Leena Järvi, Heikki Järvinen, Anna Kanukhina, Pavel Konstantinov, Vladimir Kotlyakov, Antti-Jussi Kieloaho, Alexander S. Komarov, Joni Kujansuu, Ilmo Kukkonen, Ella-Maria Duplissy, Ari Laaksonen, Tuomas Laurila, Heikki Lihavainen, Alexander Lisitzin, Alexsander Mahura, Alexander Makshtas, Evgeny Mareev, Stephany Mazon, Dmitry Matishov, Vladimir Melnikov, Eugene Mikhailov, Dmitri Moisseev, Robert Nigmatulin, Steffen M. Noe, Anne Ojala, Mari Pihlatie, Olga Popovicheva, Jukka Pumpanen, Tatjana Regerand, Irina Repina, Aleksei Shcherbinin, Vladimir Shevchenko, Mikko Sipilä, Andrey Skorokhod, Dominick V. Spracklen, Hang Su, Dmitry A. Subetto, Junying Sun, Arkady Y. Terzhevik, Yuri Timofeyev, Yuliya Troitskaya, Veli-Pekka Tynkkynen, Viacheslav I. Kharuk, Nina Zaytseva, Jiahua Zhang, Yrjö Viisanen, Timo Vesala, Pertti Hari, Hans Christen Hansson, Gennady G. Matvienko, Nikolai S. Kasimov, Huadong Guo, Valery Bondur, Sergej Zilitinkevich, and Markku Kulmala
Atmos. Chem. Phys., 16, 14421–14461, https://doi.org/10.5194/acp-16-14421-2016, https://doi.org/10.5194/acp-16-14421-2016, 2016
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After kick off in 2012, the Pan-Eurasian Experiment (PEEX) program has expanded fast and today the multi-disciplinary research community covers ca. 80 institutes and a network of ca. 500 scientists from Europe, Russia, and China. Here we introduce scientific topics relevant in this context. This is one of the first multi-disciplinary overviews crossing scientific boundaries, from atmospheric sciences to socio-economics and social sciences.
Linda M. J. Kooijmans, Nelly A. M. Uitslag, Mark S. Zahniser, David D. Nelson, Stephen A. Montzka, and Huilin Chen
Atmos. Meas. Tech., 9, 5293–5314, https://doi.org/10.5194/amt-9-5293-2016, https://doi.org/10.5194/amt-9-5293-2016, 2016
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The accuracy of carbon models, used for the prediction of global climate change, is limited by the knowledge of the uptake of carbon by plants through photosynthesis. Carbonyl sulfide (COS) has been suggested as a tracer for this process. To be able to further explore and verify the application of this novel tracer we have tested a laser spectrometer for its suitability to obtain accurate and high precision measurements of COS and CO2 with both laboratory experiments and field measurements.
Üllar Rannik, Olli Peltola, and Ivan Mammarella
Atmos. Meas. Tech., 9, 5163–5181, https://doi.org/10.5194/amt-9-5163-2016, https://doi.org/10.5194/amt-9-5163-2016, 2016
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We review available methods for the random error estimation of turbulent fluxes that are widely used by the flux community. Flux errors are evaluated theoretically as well as via numerical calculations by using measured and simulated records. We recommend two flux random errors with clear physical meaning: the total error resulting from stochastic nature of turbulence, well approximated by the method of Finkelstein and Sims (2001), and the error of the flux due to the instrumental noise.
Ivan Mammarella, Olli Peltola, Annika Nordbo, Leena Järvi, and Üllar Rannik
Atmos. Meas. Tech., 9, 4915–4933, https://doi.org/10.5194/amt-9-4915-2016, https://doi.org/10.5194/amt-9-4915-2016, 2016
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In this study we have performed an inter-comparison between EddyUH and EddyPro, two public and commonly used software packages for eddy covariance data processing and calculation. The aims are to estimate the flux uncertainty due to the use of different software packages, and to assess the most critical processing steps, determining the largest deviations in the calculated fluxes. We focus not only on water vapour and carbon dioxide fluxes, but also on the methane flux.
Mari Pihlatie, Üllar Rannik, Sami Haapanala, Olli Peltola, Narasinha Shurpali, Pertti J. Martikainen, Saara Lind, Niina Hyvönen, Perttu Virkajärvi, Mark Zahniser, and Ivan Mammarella
Biogeosciences, 13, 5471–5485, https://doi.org/10.5194/bg-13-5471-2016, https://doi.org/10.5194/bg-13-5471-2016, 2016
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The sources and sinks of carbon monoxide (CO) in the biosphere are poorly understood. We report the first continuous data series of CO fluxes measured by eddy covariance method in an agricultural bioenergy crop. The CO fluxes were seasonally and diurnally variable demonstrating the parallel consumption and production processes. Radiation was the main driver of CO emissions, and the eddy covariance method was demonstrated as suitable for linking short-term flux dynamics to environmental drivers.
Yiying Chen, James Ryder, Vladislav Bastrikov, Matthew J. McGrath, Kim Naudts, Juliane Otto, Catherine Ottlé, Philippe Peylin, Jan Polcher, Aude Valade, Andrew Black, Jan A. Elbers, Eddy Moors, Thomas Foken, Eva van Gorsel, Vanessa Haverd, Bernard Heinesch, Frank Tiedemann, Alexander Knohl, Samuli Launiainen, Denis Loustau, Jérôme Ogée, Timo Vessala, and Sebastiaan Luyssaert
Geosci. Model Dev., 9, 2951–2972, https://doi.org/10.5194/gmd-9-2951-2016, https://doi.org/10.5194/gmd-9-2951-2016, 2016
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In this study, we compiled a set of within-canopy and above-canopy measurements of energy and water fluxes, and used these data to parametrize and validate the new multi-layer energy budget scheme for a range of forest types. An adequate parametrization approach has been presented for the global-scale land surface model (ORCHIDEE-CAN). Furthermore, model performance of the new multi-layer parametrization was compared against the existing single-layer scheme.
Andrey Glazunov, Üllar Rannik, Victor Stepanenko, Vasily Lykosov, Mikko Auvinen, Timo Vesala, and Ivan Mammarella
Geosci. Model Dev., 9, 2925–2949, https://doi.org/10.5194/gmd-9-2925-2016, https://doi.org/10.5194/gmd-9-2925-2016, 2016
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Large-eddy simulation (LES) and Lagrangian stochastic modeling of passive particle dispersion were applied to the scalar flux footprint determination in the stable atmospheric boundary layer. The footprint functions obtained in LES were compared with the functions calculated with the use of first-order single-particle Lagrangian stochastic models (LSMs) and zeroth-order Lagrangian stochastic models - the random displacement models (RDMs).
Gianluca Tramontana, Martin Jung, Christopher R. Schwalm, Kazuhito Ichii, Gustau Camps-Valls, Botond Ráduly, Markus Reichstein, M. Altaf Arain, Alessandro Cescatti, Gerard Kiely, Lutz Merbold, Penelope Serrano-Ortiz, Sven Sickert, Sebastian Wolf, and Dario Papale
Biogeosciences, 13, 4291–4313, https://doi.org/10.5194/bg-13-4291-2016, https://doi.org/10.5194/bg-13-4291-2016, 2016
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We have evaluated 11 machine learning (ML) methods and two complementary drivers' setup to estimate the carbon dioxide (CO2) and energy exchanges between land ecosystems and atmosphere. Obtained results have shown high consistency among ML and high capability to estimate the spatial and seasonal variability of the target fluxes. The results were good for all the ecosystems, with limitations to the ones in the extreme environments (cold, hot) or less represented in the training data (tropics).
Victor Stepanenko, Ivan Mammarella, Anne Ojala, Heli Miettinen, Vasily Lykosov, and Timo Vesala
Geosci. Model Dev., 9, 1977–2006, https://doi.org/10.5194/gmd-9-1977-2016, https://doi.org/10.5194/gmd-9-1977-2016, 2016
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A 1-D lake model is presented, reproducing temperature, oxygen, carbon dioxide and methane. All prognostic variables are treated in unified manner via generic 1-D transport equation. The model is validated vs. comprehensive observational data set gathered at Kuivajärvi Lake (Finland). Our results suggest that a gas transfer through thermocline under intense seiche motions is a bottleneck in quantifying greenhouse gas dynamics in dimictic lakes, calling for further research.
Üllar Rannik, Luxi Zhou, Putian Zhou, Rosa Gierens, Ivan Mammarella, Andrey Sogachev, and Michael Boy
Atmos. Chem. Phys., 16, 3145–3160, https://doi.org/10.5194/acp-16-3145-2016, https://doi.org/10.5194/acp-16-3145-2016, 2016
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Atmospheric boundary layer (ABL) model coupled with detailed atmospheric chemistry and aerosol dynamical model was used to quantify the role of aerosol and ABL dynamics in the vertical transport of aerosols at a pine forest site in southern Finland. Simulations showed that under dynamical conditions the particle fluxes above canopy can significantly deviate from the dry deposition into the canopy. The deviation can be systematic for certain particle sizes over a period of several days.
Saara E. Lind, Narasinha J. Shurpali, Olli Peltola, Ivan Mammarella, Niina Hyvönen, Marja Maljanen, Mari Räty, Perttu Virkajärvi, and Pertti J. Martikainen
Biogeosciences, 13, 1255–1268, https://doi.org/10.5194/bg-13-1255-2016, https://doi.org/10.5194/bg-13-1255-2016, 2016
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We showed that the reed canary grass (RCG) was environmentally friendly from the CO2 balance point of view when cultivated on this mineral soil. When compared to the earlier findings on the same crop on organic soil site, the capacity of the crop to withdraw atmospheric CO2 was even stronger on the present mineral soil site than that on the organic soil site. For full estimation of the climatic impacts of this bioenergy system, a life cycle assessment will be needed.
A. Collalti, S. Marconi, A. Ibrom, C. Trotta, A. Anav, E. D'Andrea, G. Matteucci, L. Montagnani, B. Gielen, I. Mammarella, T. Grünwald, A. Knohl, F. Berninger, Y. Zhao, R. Valentini, and M. Santini
Geosci. Model Dev., 9, 479–504, https://doi.org/10.5194/gmd-9-479-2016, https://doi.org/10.5194/gmd-9-479-2016, 2016
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This study evaluates the performances of the new version (v.5.1) of 3D-CMCC Forest Ecosystem Model in simulating gross primary productivity (GPP), against eddy covariance GPP data for 10 FLUXNET forest sites across Europe. The model consistently reproduces both in timing and in magnitude daily and monthly GPP variability across all sites, with the exception of the two Mediterranean sites. Inclusion of forest structure within simulation ameliorate in some cases the model output.
P. Hari, T. Petäjä, J. Bäck, V.-M. Kerminen, H. K. Lappalainen, T. Vihma, T. Laurila, Y. Viisanen, T. Vesala, and M. Kulmala
Atmos. Chem. Phys., 16, 1017–1028, https://doi.org/10.5194/acp-16-1017-2016, https://doi.org/10.5194/acp-16-1017-2016, 2016
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This manuscript introduces a conceptual design of a global, hierarchical observation network which provides tools and increased understanding to tackle the inter-connected environmental and societal challenges that we will face in the coming decades. Each ecosystem type on the globe has its own characteristic features that need to be taken into consideration. The hierarchical network is able to tackle problems related to large spatial scales, heterogeneity of ecosystems and their complexity.
Y. Gao, T. Markkanen, T. Thum, M. Aurela, A. Lohila, I. Mammarella, M. Kämäräinen, S. Hagemann, and T. Aalto
Hydrol. Earth Syst. Sci., 20, 175–191, https://doi.org/10.5194/hess-20-175-2016, https://doi.org/10.5194/hess-20-175-2016, 2016
S. Sabbatini, N. Arriga, T. Bertolini, S. Castaldi, T. Chiti, C. Consalvo, S. Njakou Djomo, B. Gioli, G. Matteucci, and D. Papale
Biogeosciences, 13, 95–113, https://doi.org/10.5194/bg-13-95-2016, https://doi.org/10.5194/bg-13-95-2016, 2016
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The suitability of a land use change (LUC) from cropland to short rotation coppice of poplar in Central Italy was investigated by comparing the respective greenhouse gas budgets. Biogenic and anthropogenic CO2, CH4, and N2O fluxes, change in soil C stocks, and effects of biomass use were considered. In 2 years the LUC saved 2358 ± 835 gCO2eq m-2. Net ecosystem exchange of CO2 and C exports represented the main contributions to the overall budgets, while soil non-CO2 fluxes were negligible.
T. Li, W. Zhang, Q. Zhang, Y. Lu, G. Wang, Z. Niu, M. Raivonen, and T. Vesala
Biogeosciences, 12, 6853–6868, https://doi.org/10.5194/bg-12-6853-2015, https://doi.org/10.5194/bg-12-6853-2015, 2015
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Natural wetlands in China have experienced extensive conversion and climate warming, which makes the estimation of methane emission from wetlands highly uncertain. In this paper, we simulated an increase of 25.5% in national CH4 fluxes from 1950 to 2010, which was mainly induced by climate warming. Although climate warming has accelerated CH4 fluxes, the total amount of national CH4 emissions decreased by approximately 2.35 Tg (1.91－2.81 Tg), due to a large wetland loss of 17.0 million ha.
L. Wingate, J. Ogée, E. Cremonese, G. Filippa, T. Mizunuma, M. Migliavacca, C. Moisy, M. Wilkinson, C. Moureaux, G. Wohlfahrt, A. Hammerle, L. Hörtnagl, C. Gimeno, A. Porcar-Castell, M. Galvagno, T. Nakaji, J. Morison, O. Kolle, A. Knohl, W. Kutsch, P. Kolari, E. Nikinmaa, A. Ibrom, B. Gielen, W. Eugster, M. Balzarolo, D. Papale, K. Klumpp, B. Köstner, T. Grünwald, R. Joffre, J.-M. Ourcival, M. Hellstrom, A. Lindroth, C. George, B. Longdoz, B. Genty, J. Levula, B. Heinesch, M. Sprintsin, D. Yakir, T. Manise, D. Guyon, H. Ahrends, A. Plaza-Aguilar, J. H. Guan, and J. Grace
Biogeosciences, 12, 5995–6015, https://doi.org/10.5194/bg-12-5995-2015, https://doi.org/10.5194/bg-12-5995-2015, 2015
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The timing of plant development stages and their response to climate and management were investigated using a network of digital cameras installed across different European ecosystems. Using the relative red, green and blue content of images we showed that the green signal could be used to estimate the length of the growing season in broadleaf forests. We also developed a model that predicted the seasonal variations of camera RGB signals and how they relate to leaf pigment content and area well.
H. van Asperen, T. Warneke, S. Sabbatini, G. Nicolini, D. Papale, and J. Notholt
Biogeosciences, 12, 4161–4174, https://doi.org/10.5194/bg-12-4161-2015, https://doi.org/10.5194/bg-12-4161-2015, 2015
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Recent studies have suggested the potential importance of abiotic decomposition (photodegradation) in arid ecosystems. This study focuses on the measurement and understanding of abiotic fluxes. Photodegradation fluxes have not been observed. Thermal degradation fluxes were observed in the field (for CO) and in the laboratory (for CO2 and CO). Previous studies have potentially overestimated the role of photodegradation or misinterpreted thermal degradation fluxes as photodegradation fluxes.
N. Vuichard and D. Papale
Earth Syst. Sci. Data, 7, 157–171, https://doi.org/10.5194/essd-7-157-2015, https://doi.org/10.5194/essd-7-157-2015, 2015
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In order to fill the gaps in the in situ meteorological data that is acquired at FLUXNET stations, we develop a method that makes use of the reanalysis ERA-interim, which is available globally and at a high temporal resolution. Because the ERA-interim data are not measured at site level, we bias-correct them. The developed method is applied and evaluated at 153 FLUXNET stations. The final product consists of uninterrupted meteorological records that can be used for running most ecosystem models.
F. Minunno, M. Peltoniemi, S. Launiainen, M. Aurela, A. Lindroth, A. Lohila, I. Mammarella, K. Minkkinen, and A. Mäkelä
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-8-5089-2015, https://doi.org/10.5194/gmdd-8-5089-2015, 2015
Revised manuscript not accepted
M. Balzarolo, L. Vescovo, A. Hammerle, D. Gianelle, D. Papale, E. Tomelleri, and G. Wohlfahrt
Biogeosciences, 12, 3089–3108, https://doi.org/10.5194/bg-12-3089-2015, https://doi.org/10.5194/bg-12-3089-2015, 2015
Ü. Rannik, S. Haapanala, N. J. Shurpali, I. Mammarella, S. Lind, N. Hyvönen, O. Peltola, M. Zahniser, P. J. Martikainen, and T. Vesala
Biogeosciences, 12, 415–432, https://doi.org/10.5194/bg-12-415-2015, https://doi.org/10.5194/bg-12-415-2015, 2015
B. Tupek, K. Minkkinen, J. Pumpanen, T. Vesala, and E. Nikinmaa
Biogeosciences, 12, 281–297, https://doi.org/10.5194/bg-12-281-2015, https://doi.org/10.5194/bg-12-281-2015, 2015
O. Peltola, A. Hensen, C. Helfter, L. Belelli Marchesini, F. C. Bosveld, W. C. M. van den Bulk, J. A. Elbers, S. Haapanala, J. Holst, T. Laurila, A. Lindroth, E. Nemitz, T. Röckmann, A. T. Vermeulen, and I. Mammarella
Biogeosciences, 11, 3163–3186, https://doi.org/10.5194/bg-11-3163-2014, https://doi.org/10.5194/bg-11-3163-2014, 2014
M. Balzarolo, S. Boussetta, G. Balsamo, A. Beljaars, F. Maignan, J.-C. Calvet, S. Lafont, A. Barbu, B. Poulter, F. Chevallier, C. Szczypta, and D. Papale
Biogeosciences, 11, 2661–2678, https://doi.org/10.5194/bg-11-2661-2014, https://doi.org/10.5194/bg-11-2661-2014, 2014
G. Fratini, D. K. McDermitt, and D. Papale
Biogeosciences, 11, 1037–1051, https://doi.org/10.5194/bg-11-1037-2014, https://doi.org/10.5194/bg-11-1037-2014, 2014
R. Valentini, A. Arneth, A. Bombelli, S. Castaldi, R. Cazzolla Gatti, F. Chevallier, P. Ciais, E. Grieco, J. Hartmann, M. Henry, R. A. Houghton, M. Jung, W. L. Kutsch, Y. Malhi, E. Mayorga, L. Merbold, G. Murray-Tortarolo, D. Papale, P. Peylin, B. Poulter, P. A. Raymond, M. Santini, S. Sitch, G. Vaglio Laurin, G. R. van der Werf, C. A. Williams, and R. J. Scholes
Biogeosciences, 11, 381–407, https://doi.org/10.5194/bg-11-381-2014, https://doi.org/10.5194/bg-11-381-2014, 2014
S. Dengel, D. Zona, T. Sachs, M. Aurela, M. Jammet, F. J. W. Parmentier, W. Oechel, and T. Vesala
Biogeosciences, 10, 8185–8200, https://doi.org/10.5194/bg-10-8185-2013, https://doi.org/10.5194/bg-10-8185-2013, 2013
K. Wang, C. Liu, X. Zheng, M. Pihlatie, B. Li, S. Haapanala, T. Vesala, H. Liu, Y. Wang, G. Liu, and F. Hu
Biogeosciences, 10, 6865–6877, https://doi.org/10.5194/bg-10-6865-2013, https://doi.org/10.5194/bg-10-6865-2013, 2013
O. Peltola, I. Mammarella, S. Haapanala, G. Burba, and T. Vesala
Biogeosciences, 10, 3749–3765, https://doi.org/10.5194/bg-10-3749-2013, https://doi.org/10.5194/bg-10-3749-2013, 2013
J. F. J. Korhonen, M. Pihlatie, J. Pumpanen, H. Aaltonen, P. Hari, J. Levula, A.-J. Kieloaho, E. Nikinmaa, T. Vesala, and H. Ilvesniemi
Biogeosciences, 10, 1083–1095, https://doi.org/10.5194/bg-10-1083-2013, https://doi.org/10.5194/bg-10-1083-2013, 2013
G. Lasslop, M. Migliavacca, G. Bohrer, M. Reichstein, M. Bahn, A. Ibrom, C. Jacobs, P. Kolari, D. Papale, T. Vesala, G. Wohlfahrt, and A. Cescatti
Biogeosciences, 9, 5243–5259, https://doi.org/10.5194/bg-9-5243-2012, https://doi.org/10.5194/bg-9-5243-2012, 2012
Related subject area
Biogeochemistry: Greenhouse Gases
Interferences caused by the biogeochemical methane cycle in peats during the assessment of abandoned oil wells
Carbon sequestration in different urban vegetation types in Southern Finland
Proglacial methane emissions driven by meltwater and groundwater flushing in a high-Arctic glacial catchment
Seasonal and interannual variability in CO2 fluxes in southern Africa seen by GOSAT
Air temperature and precipitation constraining the modelled wetland methane emissions in a boreal region in northern Europe
Ensemble estimates of global wetland methane emissions over 2000–2020
Seasonal carbon fluxes from vegetation and soil in a Mediterranean non-tidal salt marsh
Explainable machine learning for modeling of net ecosystem exchange in boreal forests
Dynamics of CO2 and CH4 fluxes in Red Sea mangrove soils
Nitrous oxide (N2O) in Macquarie Harbour, Tasmania
Technical note: A low-cost, automatic soil–plant–atmosphere enclosure system to investigate CO2 and evapotranspiration flux dynamics
Tidal influence on carbon dioxide and methane fluxes from tree stems and soils in mangrove forests
Drought conditions disrupt atmospheric carbon uptake in a Mediterranean saline lake
Physicochemical perturbation increases nitrous oxide production from denitrification in soils and sediments
Carbon degradation and mobilisation potentials of thawing permafrost peatlands in northern Norway inferred from laboratory incubations
Seasonal dynamics and regional distribution patterns of CO2 and CH4 in the north-eastern Baltic Sea
Rising Arctic Seas and Thawing Permafrost: Uncovering the Carbon Cycle Impact in a Thermokarst Lagoon System in the outer Mackenzie Delta, Canada
Interannual and seasonal variability of the air–sea CO2 exchange at Utö in the coastal region of the Baltic Sea
Modelling decadal trends and the impact of extreme events on carbon fluxes in a deciduous temperate forest using the QUINCY model
CO2 emissions of drained coastal peatlands in the Netherlands and potential emission reduction by water infiltration systems
Intercomparison of biogenic CO2 flux models in four urban parks in the city of Zurich
Influence of wind strength and direction on diffusive methane fluxes and atmospheric methane concentrations above the North Sea
Surface CO2 Gradients Challenge Conventional CO2 Emission Quantification in Lentic Water Bodies under Calm Conditions
Eddy covariance fluxes of CO2, CH4 and N2O on a drained peatland forest after clearcutting
Spatiotemporal variability of CO2, N2O and CH4 fluxes from a semi-deciduous tropical forest soil in the Congo basin
Eddy Covariance Evaluation of Ecosystem Fluxes at a Temperate Saltmarsh in Victoria, Australia Shows Large CO2 Uptake
Using eddy covariance observations to determine the carbon sequestration characteristics of subalpine forests in the Qinghai–Tibet Plateau
Isotopomer labeling and oxygen dependence of hybrid nitrous oxide production
The emission of CO from tropical rainforest soils
CO2 flux characteristics of the grassland ecosystem and its response to environmental factors in the dry-hot valley of Jinsha River, China
Modelling CO2 and N2O emissions from soils in silvopastoral systems of the West African Sahelian band
A case study on topsoil removal and rewetting for paludiculture: effect on biogeochemistry and greenhouse gas emissions from Typha latifolia, Typha angustifolia, and Azolla filiculoides
Assessing improvements in global ocean pCO2 machine learning reconstructions with Southern Ocean autonomous sampling
Timescale dependence of airborne fraction and underlying climate–carbon-cycle feedbacks for weak perturbations in CMIP5 models
Technical note: Preventing CO2 overestimation from mercuric or copper(II) chloride preservation of dissolved greenhouse gases in freshwater samples
Exploring temporal and spatial variation of nitrous oxide flux using several years of peatland forest automatic chamber data
Diurnal versus spatial variability of greenhouse gas emissions from an anthropogenically modified lowland river in Germany
Regional assessment and uncertainty analysis of carbon and nitrogen balances at cropland scale using the ecosystem model LandscapeDNDC
Resolving heterogeneous fluxes from tundra halves the growing season carbon budget
Lawns and meadows in urban green space – a comparison from perspectives of greenhouse gases, drought resilience and plant functional types
Large contribution of soil N2O emission to the global warming potential of a large-scale oil palm plantation despite changing from conventional to reduced management practices
Identifying landscape hot and cold spots of soil greenhouse gas fluxes by combining field measurements and remote sensing data
Enhanced Southern Ocean CO2 outgassing as a result of stronger and poleward shifted southern hemispheric westerlies
Spatial and temporal variability of methane emissions and environmental conditions in a hyper-eutrophic fishpond
Optical and radar Earth observation data for upscaling methane emissions linked to permafrost degradation in sub-Arctic peatlands in northern Sweden
Herbivore–shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic
Methane emissions due to reservoir flushing: a significant emission pathway?
Carbon dioxide and methane fluxes from mounds of African fungus-growing termites
Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea
Technical note: Skirt chamber – an open dynamic method for the rapid and minimally intrusive measurement of greenhouse gas emissions from peatlands
Sebastian F. A. Jordan, Stefan Schloemer, Martin Krüger, Tanja Heffner, Marcus A. Horn, and Martin Blumenberg
Biogeosciences, 22, 809–830, https://doi.org/10.5194/bg-22-809-2025, https://doi.org/10.5194/bg-22-809-2025, 2025
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Using a multilayer approach, we studied the methane flux, soil gas composition, and isotopic signatures of soil methane and carbon dioxide at eight cut and buried abandoned oil wells in a peat-rich area of northern Germany. The detected methane emissions were of biogenic, peat origin and were not associated with the abandoned wells. Additional microbial analysis and methane oxidation rate measurements demonstrated a high methane emission mitigation potential in the studied peat soils.
Laura Thölix, Leif Backman, Minttu Havu, Esko Karvinen, Jesse Soininen, Justine Trémeau, Olli Nevalainen, Joyson Ahongshangbam, Leena Järvi, and Liisa Kulmala
Biogeosciences, 22, 725–749, https://doi.org/10.5194/bg-22-725-2025, https://doi.org/10.5194/bg-22-725-2025, 2025
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Cities aim for carbon neutrality and seek to understand urban vegetation's role as a carbon sink. Direct measurements are challenging, so models are used to estimate the urban carbon cycle. We evaluated model performance at estimating carbon sequestration in lawns, park trees, and urban forests in Helsinki, Finland. Models captured seasonal and annual variations well. Trees had higher sequestration rates than lawns, and irrigation often enhanced carbon sinks.
Gabrielle E. Kleber, Leonard Magerl, Alexandra V. Turchyn, Stefan Schloemer, Mark Trimmer, Yizhu Zhu, and Andrew Hodson
Biogeosciences, 22, 659–674, https://doi.org/10.5194/bg-22-659-2025, https://doi.org/10.5194/bg-22-659-2025, 2025
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Our research on Svalbard shows that glacier melt rivers can transport large amounts of methane, a potent greenhouse gas. By studying a glacier over one summer, we found that its river was highly concentrated in methane, suggesting that rivers could provide a significant source of methane emissions as the Arctic warms and glaciers melt. This is the first time such emissions have been measured on Svalbard, indicating a wider environmental concern as such processes are occurring across the Arctic.
Eva-Marie Metz, Sanam Noreen Vardag, Sourish Basu, Martin Jung, and André Butz
Biogeosciences, 22, 555–584, https://doi.org/10.5194/bg-22-555-2025, https://doi.org/10.5194/bg-22-555-2025, 2025
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We estimate CO2 fluxes in semiarid southern Africa from 2009 to 2018 based on satellite CO2 measurements and atmospheric inverse modeling. By selecting process-based vegetation models, which agree with the satellite CO2 fluxes, we find that soil respiration mainly drives the seasonality, whereas photosynthesis substantially influences the interannual variability. Our study emphasizes the need for better representation of the response of semiarid ecosystems to soil rewetting in vegetation models.
Tuula Aalto, Aki Tsuruta, Jarmo Mäkelä, Jurek Müller, Maria Tenkanen, Eleanor Burke, Sarah Chadburn, Yao Gao, Vilma Mannisenaho, Thomas Kleinen, Hanna Lee, Antti Leppänen, Tiina Markkanen, Stefano Materia, Paul A. Miller, Daniele Peano, Olli Peltola, Benjamin Poulter, Maarit Raivonen, Marielle Saunois, David Wårlind, and Sönke Zaehle
Biogeosciences, 22, 323–340, https://doi.org/10.5194/bg-22-323-2025, https://doi.org/10.5194/bg-22-323-2025, 2025
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Wetland methane responses to temperature and precipitation were studied in a boreal wetland-rich region in northern Europe using ecosystem models, atmospheric inversions, and upscaled flux observations. The ecosystem models differed in their responses to temperature and precipitation and in their seasonality. However, multi-model means, inversions, and upscaled fluxes had similar seasonality, and they suggested co-limitation by temperature and precipitation.
Zhen Zhang, Benjamin Poulter, Joe R. Melton, William J. Riley, George H. Allen, David J. Beerling, Philippe Bousquet, Josep G. Canadell, Etienne Fluet-Chouinard, Philippe Ciais, Nicola Gedney, Peter O. Hopcroft, Akihiko Ito, Robert B. Jackson, Atul K. Jain, Katherine Jensen, Fortunat Joos, Thomas Kleinen, Sara H. Knox, Tingting Li, Xin Li, Xiangyu Liu, Kyle McDonald, Gavin McNicol, Paul A. Miller, Jurek Müller, Prabir K. Patra, Changhui Peng, Shushi Peng, Zhangcai Qin, Ryan M. Riggs, Marielle Saunois, Qing Sun, Hanqin Tian, Xiaoming Xu, Yuanzhi Yao, Yi Xi, Wenxin Zhang, Qing Zhu, Qiuan Zhu, and Qianlai Zhuang
Biogeosciences, 22, 305–321, https://doi.org/10.5194/bg-22-305-2025, https://doi.org/10.5194/bg-22-305-2025, 2025
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This study assesses global methane emissions from wetlands between 2000 and 2020 using multiple models. We found that wetland emissions increased by 6–7 Tg CH4 yr-1 in the 2010s compared to the 2000s. Rising temperatures primarily drove this increase, while changes in precipitation and CO2 levels also played roles. Our findings highlight the importance of wetlands in the global methane budget and the need for continuous monitoring to understand their impact on climate change.
Lorena Carrasco-Barea, Dolors Verdaguer, Maria Gispert, Xavier D. Quintana, Hélène Bourhis, and Laura Llorens
Biogeosciences, 22, 289–304, https://doi.org/10.5194/bg-22-289-2025, https://doi.org/10.5194/bg-22-289-2025, 2025
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Carbon dioxide fluxes have been measured seasonally in four plant species in a Mediterranean non-tidal salt marsh, highlighting the high carbon removal potential that these species have. Carbon dioxide and methane emissions from soil showed high variability among the habitats studied, and they were generally higher than those observed in tidal salt marshes. Our results are important for making more accurate predictions regarding carbon emissions from these ecosystems.
Ekaterina Ezhova, Topi Laanti, Anna Lintunen, Pasi Kolari, Tuomo Nieminen, Ivan Mammarella, Keijo Heljanko, and Markku Kulmala
Biogeosciences, 22, 257–288, https://doi.org/10.5194/bg-22-257-2025, https://doi.org/10.5194/bg-22-257-2025, 2025
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Machine learning (ML) models are gaining popularity in biogeosciences. They are applied as gap-filling methods and used to upscale carbon fluxes to larger areas. Here we use explainable artificial intelligence (XAI) methods to elucidate the performance of machine learning models for carbon dioxide fluxes in boreal forests. We show that statistically equal models treat input variables differently. XAI methods can help scientists make informed decisions when applying ML models in their research.
Jessica Breavington, Alexandra Steckbauer, Chuancheng Fu, Mongi Ennasri, and Carlos M. Duarte
Biogeosciences, 22, 117–134, https://doi.org/10.5194/bg-22-117-2025, https://doi.org/10.5194/bg-22-117-2025, 2025
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Mangrove carbon storage in the Red Sea is lower than average due to challenging growth conditions. We collected mangrove soil cores over multiple seasons to measure greenhouse gas (GHG) flux of carbon dioxide and methane. GHG emissions are a small offset to mangrove carbon storage overall but punctuated by periods of high emission. This variation is linked to environmental and soil properties, which were also measured. The findings aid understanding of GHG dynamics in arid mangrove ecosystems.
Johnathan Daniel Maxey, Neil D. Hartstein, Hermann W. Bange, and Moritz Müller
Biogeosciences, 21, 5613–5637, https://doi.org/10.5194/bg-21-5613-2024, https://doi.org/10.5194/bg-21-5613-2024, 2024
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The distribution of N2O in fjord-like estuaries is poorly described in the Southern Hemisphere. Our study describes N2O distribution and its drivers in one such system in Macquarie Harbour, Tasmania. Water samples were collected seasonally in 2022 and 2023. Results show the system removes atmospheric N2O when river flow is high, whereas the system emits N2O when the river flow is low. N2O generated in basins is intercepted by the surface water and exported to the ocean during high river flow.
Wael Al Hamwi, Maren Dubbert, Jörg Schaller, Matthias Lück, Marten Schmidt, and Mathias Hoffmann
Biogeosciences, 21, 5639–5651, https://doi.org/10.5194/bg-21-5639-2024, https://doi.org/10.5194/bg-21-5639-2024, 2024
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We present a fully automatic, low-cost soil–plant enclosure system to monitor CO2 and evapotranspiration fluxes within greenhouse experiments. It operates in two modes: independent, using low-cost sensors, and dependent, where multiple chambers connect to a single gas analyzer via a low-cost multiplexer. This system provides precise, accurate measurements and high temporal resolution, enabling comprehensive monitoring of plant–soil responses to various treatments and conditions.
Zhao-Jun Yong, Wei-Jen Lin, Chiao-Wen Lin, and Hsing-Juh Lin
Biogeosciences, 21, 5247–5260, https://doi.org/10.5194/bg-21-5247-2024, https://doi.org/10.5194/bg-21-5247-2024, 2024
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We measured CO2 and CH4 fluxes from mangrove stems and soils of Avicennia marina and Kandelia obovata during tidal cycles. Both stem types served as CO2 and CH4 sources, emitting less CH4 than soils, with no difference in CO2 flux. While A. marina stems showed increased CO2 fluxes from low to high tides, they acted as a CH4 sink before flooding and as a source after ebbing. However, K. obovata stems showed no flux pattern. This study highlights the need to consider tidal influence and species.
Ihab Alfadhel, Ignacio Peralta-Maraver, Isabel Reche, Enrique P. Sánchez-Cañete, Sergio Aranda-Barranco, Eva Rodríguez-Velasco, Andrew S. Kowalski, and Penélope Serrano-Ortiz
Biogeosciences, 21, 5117–5129, https://doi.org/10.5194/bg-21-5117-2024, https://doi.org/10.5194/bg-21-5117-2024, 2024
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Inland saline lakes are crucial in the global carbon cycle, but increased droughts may alter their carbon exchange capacity. We measured CO2 and CH4 fluxes in a Mediterranean saline lake using the eddy covariance method under dry and wet conditions. We found the lake acts as a carbon sink during wet periods but not during droughts. These results highlight the importance of saline lakes in carbon sequestration and their vulnerability to climate-change-induced droughts.
Nathaniel B. Weston, Cynthia Troy, Patrick J. Kearns, Jennifer L. Bowen, William Porubsky, Christelle Hyacinthe, Christof Meile, Philippe Van Cappellen, and Samantha B. Joye
Biogeosciences, 21, 4837–4851, https://doi.org/10.5194/bg-21-4837-2024, https://doi.org/10.5194/bg-21-4837-2024, 2024
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Nitrous oxide (N2O) is a potent greenhouse and ozone-depleting gas produced largely from microbial nitrogen cycling processes, and human activities have resulted in increases in atmospheric N2O. We investigate the role of physical and chemical disturbances to soils and sediments in N2O production. We demonstrate that physicochemical perturbation increases N2O production, microbial community adapts over time, and initial perturbation appears to confer resilience to subsequent disturbance.
Sigrid Trier Kjær, Sebastian Westermann, Nora Nedkvitne, and Peter Dörsch
Biogeosciences, 21, 4723–4737, https://doi.org/10.5194/bg-21-4723-2024, https://doi.org/10.5194/bg-21-4723-2024, 2024
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Permafrost peatlands are thawing due to climate change, releasing large quantities of carbon that degrades upon thawing and is released as CO2, CH4 or dissolved organic carbon (DOC). We incubated thawed Norwegian permafrost peat plateaus and thermokarst pond sediment found next to permafrost for up to 350 d to measure carbon loss. CO2 production was initially the highest, whereas CH4 production increased over time. The largest carbon loss was measured at the top of the peat plateau core as DOC.
Silvie Lainela, Erik Jacobs, Stella-Theresa Luik, Gregor Rehder, and Urmas Lips
Biogeosciences, 21, 4495–4519, https://doi.org/10.5194/bg-21-4495-2024, https://doi.org/10.5194/bg-21-4495-2024, 2024
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We evaluate the variability of carbon dioxide and methane in the surface layer of the north-eastern basins of the Baltic Sea in 2018. We show that the shallower coastal areas have considerably higher spatial variability and seasonal amplitude of surface layer pCO2 and cCH4 than measured in the offshore areas of the Baltic Sea. Despite this high variability, caused mostly by coastal physical processes, the average annual air–sea CO2 fluxes differed only marginally between the sub-basins.
Maren Jenrich, Juliane Wolter, Susanne Liebner, Christian Knoblauch, Guido Grosse, Fiona Giebeler, Dustin Whalen, and Jens Strauss
EGUsphere, https://doi.org/10.5194/egusphere-2024-2891, https://doi.org/10.5194/egusphere-2024-2891, 2024
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Climate warming in the Arctic is causing the erosion of permafrost coasts and the transformation of permafrost lakes into lagoons. To understand how this affects greenhouse gas (GHG) emissions, we studied carbon dioxide (CO₂) and methane (CH₄) production in lagoons with varying sea connections. Younger lagoons produce more CH₄, while CO₂ increases in more marine conditions. Flooding of permafrost lowlands due to rising sea levels may lead to higher GHG emissions from Arctic coasts in the future.
Martti Honkanen, Mika Aurela, Juha Hatakka, Lumi Haraguchi, Sami Kielosto, Timo Mäkelä, Jukka Seppälä, Simo-Matti Siiriä, Ken Stenbäck, Juha-Pekka Tuovinen, Pasi Ylöstalo, and Lauri Laakso
Biogeosciences, 21, 4341–4359, https://doi.org/10.5194/bg-21-4341-2024, https://doi.org/10.5194/bg-21-4341-2024, 2024
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The exchange of CO2 between the sea and the atmosphere was studied in the Archipelago Sea, Baltic Sea, in 2017–2021, using an eddy covariance technique. The sea acted as a net source of CO2 with an average yearly emission of 27.1 gC m-2 yr-1, indicating that the marine ecosystem respired carbon that originated elsewhere. The yearly CO2 emission varied between 18.2–39.2 gC m-2 yr-1, mostly due to the yearly variation of ecosystem carbon uptake.
Tea Thum, Tuuli Miinalainen, Outi Seppälä, Holly Croft, Cheryl Rogers, Ralf Staebler, Silvia Caldararu, and Sönke Zaehle
EGUsphere, https://doi.org/10.5194/egusphere-2024-2802, https://doi.org/10.5194/egusphere-2024-2802, 2024
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Climate change has potential to influence the carbon sequestration potential of terrestrial ecosystems and here also nitrogen cycle is important. We used a terrestrial biosphere model QUINCY at mixed deciduous forest in Canada. We investigated the usefulness of using leaf area index and leaf chlorophyll content to improve the parameterization of the model. This work paves way for using spaceborn observations in the model parameterization, also including information on the nitrogen cycle.
Ralf C. H. Aben, Daniël van de Craats, Jim Boonman, Stijn H. Peeters, Bart Vriend, Coline C. F. Boonman, Ype van der Velde, Gilles Erkens, and Merit van den Berg
Biogeosciences, 21, 4099–4118, https://doi.org/10.5194/bg-21-4099-2024, https://doi.org/10.5194/bg-21-4099-2024, 2024
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Drained peatlands cause high CO2 emissions. We assessed the effectiveness of subsurface water infiltration systems (WISs) in reducing CO2 emissions related to increases in water table depth (WTD) on 12 sites for up to 4 years. Results show WISs markedly reduced emissions by 2.1 t CO2-C ha-1 yr-1. The relationship between the amount of carbon above the WTD and CO2 emission was stronger than the relationship between WTD and emission. Long-term monitoring is crucial for accurate emission estimates.
Stavros Stagakis, Dominik Brunner, Junwei Li, Leif Backman, Anni Karvonen, Lionel Constantin, Leena Järvi, Minttu Havu, Jia Chen, Sophie Emberger, and Liisa Kulmala
EGUsphere, https://doi.org/10.5194/egusphere-2024-2475, https://doi.org/10.5194/egusphere-2024-2475, 2024
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The balance between CO2 uptake and emissions from urban green areas is still not well understood. This study evaluated for the first time the urban park CO2 exchange simulations by four different types of biosphere models by comparing them with observations. Even though some advantages and disadvantages of the different model types were identified, there was no strong evidence that more complex models performed better than simple ones.
Ingeborg Bussmann, Eric P. Achterberg, Holger Brix, Nicolas Brüggemann, Götz Flöser, Claudia Schütze, and Philipp Fischer
Biogeosciences, 21, 3819–3838, https://doi.org/10.5194/bg-21-3819-2024, https://doi.org/10.5194/bg-21-3819-2024, 2024
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Methane (CH4) is an important greenhouse gas and contributes to climate warming. However, the input of CH4 from coastal areas to the atmosphere is not well defined. Dissolved and atmospheric CH4 was determined at high spatial resolution in or above the North Sea. The atmospheric CH4 concentration was mainly influenced by wind direction. With our detailed study on the spatial distribution of CH4 fluxes we were able to provide a detailed and more realistic estimation of coastal CH4 fluxes.
Patrick Aurich, Uwe Spank, and Matthias Koschorreck
EGUsphere, https://doi.org/10.5194/egusphere-2024-2550, https://doi.org/10.5194/egusphere-2024-2550, 2024
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Lakes can be sources and sinks for the greenhouse gas carbon dioxide. The gas exchange between the atmosphere and the water can be measured by taking gas samples in both. However, the depth of water samples is not well defined, which may cause errors. We hypothesized that gradients of CO2 concentrations develop under the surface when wind speeds are very low. Our measurements show that such a gradient can occur in calm nights, potentially shifting a lake from a CO2 sink to a source.
Olli-Pekka Tikkasalo, Olli Peltola, Pavel Alekseychik, Juha Heikkinen, Samuli Launiainen, Aleksi Lehtonen, Qian Li, Eduardo Martinez-García, Mikko Peltoniemi, Petri Salovaara, Ville Tuominen, and Raisa Mäkipää
EGUsphere, https://doi.org/10.5194/egusphere-2024-1994, https://doi.org/10.5194/egusphere-2024-1994, 2024
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The emissions of greenhouse gases (GHG) carbon dioxide (CO2), methane (CH4) and nitrous oxide (N2O) were measured from a clearcut peatland forest site. The measurements covered the whole year of 2022 which was the second growing season after the clearcut. The site was a strong GHG source and the highest emissions came from CO2 followed by N2O and CH4. A statistical model that included information on different surfaces in the site was developed to unravel surface-type specific GHG fluxes.
Roxanne Daelman, Marijn Bauters, Matti Barthel, Emmanuel Bulonza, Lodewijk Lefevre, José Mbifo, Johan Six, Klaus Butterbach-Bahl, Benjamin Wolf, Ralf Kiese, and Pascal Boeckx
EGUsphere, https://doi.org/10.5194/egusphere-2024-2346, https://doi.org/10.5194/egusphere-2024-2346, 2024
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The increase in atmospheric concentrations of several greenhouse gasses (GHG) since 1750 is attributed to human activity, however natural ecosystems, such as tropical forests, also contribute to GHG budgets. The Congo basin hosts the second largest tropical forest and is understudied. In this study, measurements of soil GHG exchange were carried out during 16 months in a tropical forest in the Congo Basin. Overall, the soil acted as a major source for CO2 and N2O and a minor sink for CH4.
Ruth Reef, Edoardo Daly, Tivanka Anandappa, Eboni-Jane Vienna-Hallam, Harriet Robertson, Matthew Peck, and Adrien Guyot
EGUsphere, https://doi.org/10.5194/egusphere-2024-2182, https://doi.org/10.5194/egusphere-2024-2182, 2024
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Studies show that saltmarshes excel at capturing carbon from the atmosphere. In this study, we measured CO2 flux in an Australian temperate saltmarsh on French Island. The temperate saltmarsh exhibited strong seasonality. During the warmer growing season, the saltmarsh absorbed on average 10.5 grams of CO2 from the atmosphere per m2 daily. Even in winter, when plants were dormant, it continued to be a CO2 sink, albeit smaller. Cool temperatures and high cloud cover inhibit carbon sequestration.
Niu Zhu, Jinniu Wang, Dongliang Luo, Xufeng Wang, Cheng Shen, and Ning Wu
Biogeosciences, 21, 3509–3522, https://doi.org/10.5194/bg-21-3509-2024, https://doi.org/10.5194/bg-21-3509-2024, 2024
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Our study delves into the vital role of subalpine forests in the Qinghai–Tibet Plateau as carbon sinks in the context of climate change. Utilizing advanced eddy covariance systems, we uncover their significant carbon sequestration potential, observing distinct seasonal patterns influenced by temperature, humidity, and radiation. Notably, these forests exhibit robust carbon absorption, with potential implications for global carbon balance.
Colette L. Kelly, Nicole M. Travis, Pascale Anabelle Baya, Claudia Frey, Xin Sun, Bess B. Ward, and Karen L. Casciotti
Biogeosciences, 21, 3215–3238, https://doi.org/10.5194/bg-21-3215-2024, https://doi.org/10.5194/bg-21-3215-2024, 2024
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Nitrous oxide, a potent greenhouse gas, accumulates in regions of the ocean that are low in dissolved oxygen. We used a novel combination of chemical tracers to determine how nitrous oxide is produced in one of these regions, the eastern tropical North Pacific Ocean. Our experiments showed that the two most important sources of nitrous oxide under low-oxygen conditions are denitrification, an anaerobic process, and a novel “hybrid” process performed by ammonia-oxidizing archaea.
Hella van Asperen, Thorsten Warneke, Alessandro Carioca de Araújo, Bruce Forsberg, Sávio José Filgueiras Ferreira, Thomas Röckmann, Carina van der Veen, Sipko Bulthuis, Leonardo Ramos de Oliveira, Thiago de Lima Xavier, Jailson da Mata, Marta de Oliveira Sá, Paulo Ricardo Teixeira, Julie Andrews de França e Silva, Susan Trumbore, and Justus Notholt
Biogeosciences, 21, 3183–3199, https://doi.org/10.5194/bg-21-3183-2024, https://doi.org/10.5194/bg-21-3183-2024, 2024
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Carbon monoxide (CO) is regarded as an important indirect greenhouse gas. Soils can emit and take up CO, but, until now, uncertainty remains as to which process dominates in tropical rainforests. We present the first soil CO flux measurements from a tropical rainforest. Based on our observations, we report that tropical rainforest soils are a net source of CO. In addition, we show that valley streams and inundated areas are likely additional hot spots of CO in the ecosystem.
Chaolei Yang, Yufeng Tian, Jingqi Cui, Guangxiong He, Jingyuan Li, Canfeng Li, Haichuang Duan, Zong Wei, Liu Yan, Xin Xia, Yong Huang, and Aihua Jiang
EGUsphere, https://doi.org/10.5194/egusphere-2024-1226, https://doi.org/10.5194/egusphere-2024-1226, 2024
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The environmental factors and CO2 flux of the grassland ecosystem in the dry-hot valley of the Jinsha River exhibited highly seasonal characteristics. During the rainy season, the grassland showed a carbon sink feature, while during the dry season, it exhibited carbon emission status. Throughout the entire year, the grassland ecosystem acted as a weak carbon source, exhibiting a carbon-neutral. The CO2 flux was most influenced by vapor pressure deficit, relative humidity, and soil water content.
Yélognissè Agbohessou, Claire Delon, Manuela Grippa, Eric Mougin, Daouda Ngom, Espoir Koudjo Gaglo, Ousmane Ndiaye, Paulo Salgado, and Olivier Roupsard
Biogeosciences, 21, 2811–2837, https://doi.org/10.5194/bg-21-2811-2024, https://doi.org/10.5194/bg-21-2811-2024, 2024
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Emissions of greenhouse gases in the Sahel are not well represented because they are considered weak compared to the rest of the world. However, natural areas in the Sahel emit carbon dioxide and nitrous oxides, which need to be assessed because of extended surfaces. We propose an assessment of such emissions in Sahelian silvopastoral systems and of how they are influenced by environmental characteristics. These results are essential to inform climate change strategies in the region.
Merit van den Berg, Thomas M. Gremmen, Renske J. E. Vroom, Jacobus van Huissteden, Jim Boonman, Corine J. A. van Huissteden, Ype van der Velde, Alfons J. P. Smolders, and Bas P. van de Riet
Biogeosciences, 21, 2669–2690, https://doi.org/10.5194/bg-21-2669-2024, https://doi.org/10.5194/bg-21-2669-2024, 2024
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Drained peatlands emit 3 % of the global greenhouse gas emissions. Paludiculture is a way to reduce CO2 emissions while at the same time generating an income for landowners. The side effect is the potentially high methane emissions. We found very high methane emissions for broadleaf cattail compared with narrowleaf cattail and water fern. The rewetting was, however, effective to stop CO2 emissions for all species. The highest potential to reduce greenhouse gas emissions had narrowleaf cattail.
Thea H. Heimdal, Galen A. McKinley, Adrienne J. Sutton, Amanda R. Fay, and Lucas Gloege
Biogeosciences, 21, 2159–2176, https://doi.org/10.5194/bg-21-2159-2024, https://doi.org/10.5194/bg-21-2159-2024, 2024
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Measurements of ocean carbon are limited in time and space. Machine learning algorithms are therefore used to reconstruct ocean carbon where observations do not exist. Improving these reconstructions is important in order to accurately estimate how much carbon the ocean absorbs from the atmosphere. In this study, we find that a small addition of observations from the Southern Ocean, obtained by autonomous sampling platforms, could significantly improve the reconstructions.
Guilherme L. Torres Mendonça, Julia Pongratz, and Christian H. Reick
Biogeosciences, 21, 1923–1960, https://doi.org/10.5194/bg-21-1923-2024, https://doi.org/10.5194/bg-21-1923-2024, 2024
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We study the timescale dependence of airborne fraction and underlying feedbacks by a theory of the climate–carbon system. Using simulations we show the predictive power of this theory and find that (1) this fraction generally decreases for increasing timescales and (2) at all timescales the total feedback is negative and the model spread in a single feedback causes the spread in the airborne fraction. Our study indicates that those are properties of the system, independently of the scenario.
François Clayer, Jan Erik Thrane, Kuria Ndungu, Andrew King, Peter Dörsch, and Thomas Rohrlack
Biogeosciences, 21, 1903–1921, https://doi.org/10.5194/bg-21-1903-2024, https://doi.org/10.5194/bg-21-1903-2024, 2024
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Determination of dissolved greenhouse gas (GHG) in freshwater allows us to estimate GHG fluxes. Mercuric chloride (HgCl2) is used to preserve water samples prior to GHG analysis despite its environmental and health impacts and interferences with water chemistry in freshwater. Here, we tested the effects of HgCl2, two substitutes and storage time on GHG in water from two boreal lakes. Preservation with HgCl2 caused overestimation of CO2 concentration with consequences for GHG flux estimation.
Helena Rautakoski, Mika Korkiakoski, Jarmo Mäkelä, Markku Koskinen, Kari Minkkinen, Mika Aurela, Paavo Ojanen, and Annalea Lohila
Biogeosciences, 21, 1867–1886, https://doi.org/10.5194/bg-21-1867-2024, https://doi.org/10.5194/bg-21-1867-2024, 2024
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Current and future nitrous oxide (N2O) emissions are difficult to estimate due to their high variability in space and time. Several years of N2O fluxes from drained boreal peatland forest indicate high importance of summer precipitation, winter temperature, and snow conditions in controlling annual N2O emissions. The results indicate increasing year-to-year variation in N2O emissions in changing climate with more extreme seasonal weather conditions.
Matthias Koschorreck, Norbert Kamjunke, Uta Koedel, Michael Rode, Claudia Schuetze, and Ingeborg Bussmann
Biogeosciences, 21, 1613–1628, https://doi.org/10.5194/bg-21-1613-2024, https://doi.org/10.5194/bg-21-1613-2024, 2024
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We measured the emission of carbon dioxide (CO2) and methane (CH4) from different sites at the river Elbe in Germany over 3 days to find out what is more important for quantification: small-scale spatial variability or diurnal temporal variability. We found that CO2 emissions were very different between day and night, while CH4 emissions were more different between sites. Dried out river sediments contributed to CO2 emissions, while the side areas of the river were important CH4 sources.
Odysseas Sifounakis, Edwin Haas, Klaus Butterbach-Bahl, and Maria P. Papadopoulou
Biogeosciences, 21, 1563–1581, https://doi.org/10.5194/bg-21-1563-2024, https://doi.org/10.5194/bg-21-1563-2024, 2024
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We performed a full assessment of the carbon and nitrogen cycles of a cropland ecosystem. An uncertainty analysis and quantification of all carbon and nitrogen fluxes were deployed. The inventory simulations include greenhouse gas emissions of N2O, NH3 volatilization and NO3 leaching from arable land cultivation in Greece. The inventory also reports changes in soil organic carbon and nitrogen stocks in arable soils.
Sarah M. Ludwig, Luke Schiferl, Jacqueline Hung, Susan M. Natali, and Roisin Commane
Biogeosciences, 21, 1301–1321, https://doi.org/10.5194/bg-21-1301-2024, https://doi.org/10.5194/bg-21-1301-2024, 2024
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Landscapes are often assumed to be homogeneous when using eddy covariance fluxes, which can lead to biases when calculating carbon budgets. In this study we report eddy covariance carbon fluxes from heterogeneous tundra. We used the footprints of each flux observation to unmix the fluxes coming from components of the landscape. We identified and quantified hot spots of carbon emissions in the landscape. Accurately scaling with landscape heterogeneity yielded half as much regional carbon uptake.
Justine Trémeau, Beñat Olascoaga, Leif Backman, Esko Karvinen, Henriikka Vekuri, and Liisa Kulmala
Biogeosciences, 21, 949–972, https://doi.org/10.5194/bg-21-949-2024, https://doi.org/10.5194/bg-21-949-2024, 2024
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We studied urban lawns and meadows in the Helsinki metropolitan area, Finland. We found that meadows are more resistant to drought events but that they do not increase carbon sequestration compared with lawns. Moreover, the transformation from lawns to meadows did not demonstrate any negative climate effects in terms of greenhouse gas emissions. Even though social and economic aspects also steer urban development, these results can guide planning to consider carbon-smart options.
Guantao Chen, Edzo Veldkamp, Muhammad Damris, Bambang Irawan, Aiyen Tjoa, and Marife D. Corre
Biogeosciences, 21, 513–529, https://doi.org/10.5194/bg-21-513-2024, https://doi.org/10.5194/bg-21-513-2024, 2024
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We established an oil palm management experiment in a large-scale oil palm plantation in Jambi, Indonesia. We recorded oil palm fruit yield and measured soil CO2, N2O, and CH4 fluxes. After 4 years of treatment, compared with conventional fertilization with herbicide weeding, reduced fertilization with mechanical weeding did not reduce yield and soil greenhouse gas emissions, which highlights the legacy effects of over a decade of conventional management prior to the start of the experiment.
Elizabeth Gachibu Wangari, Ricky Mwangada Mwanake, Tobias Houska, David Kraus, Gretchen Maria Gettel, Ralf Kiese, Lutz Breuer, and Klaus Butterbach-Bahl
Biogeosciences, 20, 5029–5067, https://doi.org/10.5194/bg-20-5029-2023, https://doi.org/10.5194/bg-20-5029-2023, 2023
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Agricultural landscapes act as sinks or sources of the greenhouse gases (GHGs) CO2, CH4, or N2O. Various physicochemical and biological processes control the fluxes of these GHGs between ecosystems and the atmosphere. Therefore, fluxes depend on environmental conditions such as soil moisture, soil temperature, or soil parameters, which result in large spatial and temporal variations of GHG fluxes. Here, we describe an example of how this variation may be studied and analyzed.
Laurie C. Menviel, Paul Spence, Andrew E. Kiss, Matthew A. Chamberlain, Hakase Hayashida, Matthew H. England, and Darryn Waugh
Biogeosciences, 20, 4413–4431, https://doi.org/10.5194/bg-20-4413-2023, https://doi.org/10.5194/bg-20-4413-2023, 2023
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As the ocean absorbs 25% of the anthropogenic emissions of carbon, it is important to understand the impact of climate change on the flux of carbon between the ocean and the atmosphere. Here, we use a very high-resolution ocean, sea-ice, carbon cycle model to show that the capability of the Southern Ocean to uptake CO2 has decreased over the last 40 years due to a strengthening and poleward shift of the southern hemispheric westerlies. This trend is expected to continue over the coming century.
Petr Znachor, Jiří Nedoma, Vojtech Kolar, and Anna Matoušů
Biogeosciences, 20, 4273–4288, https://doi.org/10.5194/bg-20-4273-2023, https://doi.org/10.5194/bg-20-4273-2023, 2023
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We conducted intensive spatial sampling of the hypertrophic fishpond to better understand the spatial dynamics of methane fluxes and environmental heterogeneity in fishponds. The diffusive fluxes of methane accounted for only a minor fraction of the total fluxes and both varied pronouncedly within the pond and over the studied summer season. This could be explained only by the water depth. Wind substantially affected temperature, oxygen and chlorophyll a distribution in the pond.
Sofie Sjögersten, Martha Ledger, Matthias Siewert, Betsabé de la Barreda-Bautista, Andrew Sowter, David Gee, Giles Foody, and Doreen S. Boyd
Biogeosciences, 20, 4221–4239, https://doi.org/10.5194/bg-20-4221-2023, https://doi.org/10.5194/bg-20-4221-2023, 2023
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Permafrost thaw in Arctic regions is increasing methane emissions, but quantification is difficult given the large and remote areas impacted. We show that UAV data together with satellite data can be used to extrapolate emissions across the wider landscape as well as detect areas at risk of higher emissions. A transition of currently degrading areas to fen type vegetation can increase emission by several orders of magnitude, highlighting the importance of quantifying areas at risk.
Cole G. Brachmann, Tage Vowles, Riikka Rinnan, Mats P. Björkman, Anna Ekberg, and Robert G. Björk
Biogeosciences, 20, 4069–4086, https://doi.org/10.5194/bg-20-4069-2023, https://doi.org/10.5194/bg-20-4069-2023, 2023
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Herbivores change plant communities through grazing, altering the amount of CO2 and plant-specific chemicals (termed VOCs) emitted. We tested this effect by excluding herbivores and studying the CO2 and VOC emissions. Herbivores reduced CO2 emissions from a meadow community and altered VOC composition; however, community type had the strongest effect on the amount of CO2 and VOCs released. Herbivores can mediate greenhouse gas emissions, but the effect is marginal and community dependent.
Ole Lessmann, Jorge Encinas Fernández, Karla Martínez-Cruz, and Frank Peeters
Biogeosciences, 20, 4057–4068, https://doi.org/10.5194/bg-20-4057-2023, https://doi.org/10.5194/bg-20-4057-2023, 2023
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Based on a large dataset of seasonally resolved methane (CH4) pore water concentrations in a reservoir's sediment, we assess the significance of CH4 emissions due to reservoir flushing. In the studied reservoir, CH4 emissions caused by one flushing operation can represent 7 %–14 % of the annual CH4 emissions and depend on the timing of the flushing operation. In reservoirs with high sediment loadings, regular flushing may substantially contribute to the overall CH4 emissions.
Matti Räsänen, Risto Vesala, Petri Rönnholm, Laura Arppe, Petra Manninen, Markus Jylhä, Jouko Rikkinen, Petri Pellikka, and Janne Rinne
Biogeosciences, 20, 4029–4042, https://doi.org/10.5194/bg-20-4029-2023, https://doi.org/10.5194/bg-20-4029-2023, 2023
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Fungus-growing termites recycle large parts of dead plant material in African savannas and are significant sources of greenhouse gases. We measured CO2 and CH4 fluxes from their mounds and surrounding soils in open and closed habitats. The fluxes scale with mound volume. The results show that emissions from mounds of fungus-growing termites are more stable than those from other termites. The soil fluxes around the mound are affected by the termite colonies at up to 2 m distance from the mound.
Tim René de Groot, Anne Margriet Mol, Katherine Mesdag, Pierre Ramond, Rachel Ndhlovu, Julia Catherine Engelmann, Thomas Röckmann, and Helge Niemann
Biogeosciences, 20, 3857–3872, https://doi.org/10.5194/bg-20-3857-2023, https://doi.org/10.5194/bg-20-3857-2023, 2023
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This study investigates methane dynamics in the Wadden Sea. Our measurements revealed distinct variations triggered by seasonality and tidal forcing. The methane budget was higher in warmer seasons but surprisingly high in colder seasons. Methane dynamics were amplified during low tides, flushing the majority of methane into the North Sea or releasing it to the atmosphere. Methanotrophic activity was also elevated during low tide but mitigated only a small fraction of the methane efflux.
Frederic Thalasso, Brenda Riquelme, Andrés Gómez, Roy Mackenzie, Francisco Javier Aguirre, Jorge Hoyos-Santillan, Ricardo Rozzi, and Armando Sepulveda-Jauregui
Biogeosciences, 20, 3737–3749, https://doi.org/10.5194/bg-20-3737-2023, https://doi.org/10.5194/bg-20-3737-2023, 2023
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A robust skirt-chamber design to capture and quantify greenhouse gas emissions from peatlands is presented. Compared to standard methods, this design improves the spatial resolution of field studies in remote locations while minimizing intrusion.
Cited articles
Aalto, J., Aalto, P., Keronen, P., Kolari, P., Rantala, P., Taipale, R., Kajos, M., Patokoski, J., Rinne, J., Ruuskanen, T., Leskinen, M., Laakso, H., Levula, J., Pohja, T., Siivola, E., and Kulmala, M.: SMEAR II Hyytiälä forest meteorology, greenhouse gases, air quality and soil (Version 1), University of Helsinki, Institute for Atmospheric and Earth System Research [data set], http://urn.fi/urn:nbn:fi:att:a8e81c0e-2838-4df4-9589-74a4240138f8 (last access: 9 June 2020), 2019. a
Asaf, D., Rotenberg, E., Tatarinov, F., Dicken, U., Montzka, S. A., and Yakir, D.: Ecosystem photosynthesis inferred from measurements of carbonyl sulphide flux, Nat. Geosci., 6, 186–190, https://doi.org/10.1038/NGEO1730, 2013. a, b
Aubinet, M.: Eddy covariance CO2 flux measurements in nocturnal conditions: an analysis of the problem, Ecol. Appl., 18, 1368–1378, 2008. a
Bernacchi, C., Singsaas, E., Pimentel, C., Portis Jr., A., and Long, S.: Improved temperature response functions for models of Rubisco-limited photosynthesis, Plant Cell Environ., 24, 253–259, https://doi.org/10.1111/j.1365-3040.2001.00668.x, 2001. a, b
Berry, J., Wolf, A., Campbell, J. E., Baker, I., Blake, N., Blake, D., Denning, A. S., Kawa, S. R., Montzka, S. A., Seibt, U., Stimler, K., Yakir, D., and Zhu, Z.: A coupled model of the global cycles of carbonyl sulfide and CO2: A possible new window on the carbon cycle, J. Geophys. Res.-Biogeo., 118, 842–852, https://doi.org/10.1002/jgrg.20068, 2013. a
Blonquist, J. M., Montzka, S. A., Munger, J. W., Yakir, D., Desai, A. R., Dragoni, D., Griffis, T. J., Monson, R. K., Scott, R. L., and Bowling, D. R.: The potential of carbonyl sulfide as a proxy for gross primary production at flux tower sites, J. Geophys. Res., 116, G04019, https://doi.org/10.1029/2011JG001723, 2011. a, b
Commane, R., Meredith, L., Baker, I. T., Berry, J. A., Munger, J. W., and Montzka, S. A.: Seasonal fluxes of carbonyl sulfide in a midlatitude forest, P. Natl. Acad. Sci. USA, 112, 14162–14167, https://doi.org/10.1073/pnas.1504131112, 2015. a
Desai, A., Richardson, A., Moffat, A., Kattge, J., Hollinger, D., Barr, A., Falge, E., Noormets, A., Papale, D., Reichstein, M., and Stauch, V.: Cross-site evaluation of eddy covariance GPP and RE decomposition techniques, Agr. Forest Meteorol., 148, 821–838, https://doi.org/10.1016/j.agrformet.2007.11.012, 2008. a
Dewar, R., Mauranen, A., Mäkelä, A., Hölttä, T., Medlyn, B., and Vesala, T.: New insights into the covariation of stomatal, mesophyll and hydraulic conductances from optimization models incorporating nonstomatal limitations to photosynthesis, New Phytol., 217, 571–585, https://doi.org/10.1111/nph.14848, 2018. a, b, c, d, e, f, g, h, i, j
Dewar, R., Hölttä, T., and Salmon, Y.: Exploring optimal stomatal control under alternative hypotheses for the regulation of plant sources and sinks, New Phytol., 233, 639–654, 2021. a
Dusenge, M. E., Duarte, A. G., and Way, D. A.: Plant carbon metabolism and climate change: elevated CO2 and temperature impacts on photosynthesis, photorespiration and respiration, New Phytol., 221, 32–49, 2019. a
Duursma, R. A., Kolari, P., Perämäki, M., Nikinmaa, E., Hari, P., Delzon, S., Loustau, D., Ilvesniemi, H., Pumpanen, J., and Mäkelä, A.: Predicting the decline in daily maximum transpiration rate of two pine stands during drought based on constant minimum leaf water potential and plant hydraulic conductance, Tree Physiol., 28, 265–276, 2008. a, b, c, d, e, f
Farquhar, G., von Caemmerer, S., and Berry, J.: A biochemical model of photosynthetic CO2 assimilation in leaves of C3 species, Planta, 149, 78–90, 1980. a
Friedlingstein, P., O'Sullivan, M., Jones, M. W., Andrew, R. M., Hauck, J., Olsen, A., Peters, G. P., Peters, W., Pongratz, J., Sitch, S., Le Quéré, C., Canadell, J. G., Ciais, P., Jackson, R. B., Alin, S., Aragão, L. E. O. C., Arneth, A., Arora, V., Bates, N. R., Becker, M., Benoit-Cattin, A., Bittig, H. C., Bopp, L., Bultan, S., Chandra, N., Chevallier, F., Chini, L. P., Evans, W., Florentie, L., Forster, P. M., Gasser, T., Gehlen, M., Gilfillan, D., Gkritzalis, T., Gregor, L., Gruber, N., Harris, I., Hartung, K., Haverd, V., Houghton, R. A., Ilyina, T., Jain, A. K., Joetzjer, E., Kadono, K., Kato, E., Kitidis, V., Korsbakken, J. I., Landschützer, P., Lefèvre, N., Lenton, A., Lienert, S., Liu, Z., Lombardozzi, D., Marland, G., Metzl, N., Munro, D. R., Nabel, J. E. M. S., Nakaoka, S.-I., Niwa, Y., O'Brien, K., Ono, T., Palmer, P. I., Pierrot, D., Poulter, B., Resplandy, L., Robertson, E., Rödenbeck, C., Schwinger, J., Séférian, R., Skjelvan, I., Smith, A. J. P., Sutton, A. J., Tanhua, T., Tans, P. P., Tian, H., Tilbrook, B., van der Werf, G., Vuichard, N., Walker, A. P., Wanninkhof, R., Watson, A. J., Willis, D., Wiltshire, A. J., Yuan, W., Yue, X., and Zaehle, S.: Global Carbon Budget 2020, Earth Syst. Sci. Data, 12, 3269–3340, https://doi.org/10.5194/essd-12-3269-2020, 2020. a
Gimeno, T. E., Saavedra, N., Ogée, J., Medlyn, B., and Wingate, L.: A novel optimization approach incorporating non-stomatal limitations predicts stomatal behaviour in species from six plant functional types, J. Exp. Bot., 70, 1639–1651, https://doi.org/10.1093/jxb/erz020, 2019. a
Hari, P. and Kulmala, M.: Station for Measuring Ecosystem–Atmosphere Relations (SMEAR II), Boreal Environ. Res., 10, 315–322, 2005. a
Ilvesniemi, H., Levula, J., Ojansuu, R., Kolari, P., Kulmala, L., Pumpanen, J., Launiainen, S., Vesala, T., and Nikinmaa, E.: Long-term measurements of the carbon balance of a boreal Scots pine dominated forest ecosystem, Boreal Environ. Res., 14, 731–753, 2009. a
Kettle, A. J., Kuhn, U., Von Hobe, M., Kesselmeier, J., and Andreae, M. O.: Global budget of atmospheric carbonyl sulfide: Temporal and spatial variations of the dominant sources and sinks, J. Geophys. Res.-Atmos., 107, 1–16, https://doi.org/10.1029/2002JD002187, 2002. a
Kohonen, K.-M., Tramontana, G., and Kolari, P.: Dataset for “Intercomparison of methods to estimate gross primary production based on CO2 and COS flux measurements”, https://doi.org/10.5281/zenodo.6940750, 2022. a
Kolari, P., Chan, T., Porcar-Castell, A., Bäck, J., Nikinmaa, E., and Juurola, E.: Field and controlled environment measurements show strong seasonal acclimation in photosynthesis and respiration potential in boreal Scots pine, Front. Plant Sci., 5, 717, https://doi.org/10.3389/fpls.2014.00717, 2014. a
Kooijmans, L. M. J., Maseyk, K., Seibt, U., Sun, W., Vesala, T., Mammarella, I., Kolari, P., Aalto, J., Franchin, A., Vecchi, R., Valli, G., and Chen, H.: Canopy uptake dominates nighttime carbonyl sulfide fluxes in a boreal forest, Atmos. Chem. Phys., 17, 11453–11465, https://doi.org/10.5194/acp-17-11453-2017, 2017. a
Kulmala, L., Pumpanen, J., Kolari, P., Dengel, S., Berninger, F., Köster, K., Matkala, L., Vanhatalo, A., Vesala, T., and Bäck, J.: Inter-and intra-annual dynamics of photosynthesis differ between forest floor vegetation and tree canopy in a subarctic Scots pine stand, Agr. Forest Meteorol., 271, 1–11, https://doi.org/10.1016/j.agrformet.2019.02.029, 2019. a, b
Lasslop, G., Reichstein, M., Papale, D., Richardson, A., Arneth, A., Barr, A., Stoy, P., and Wohlfahrt, G.: Separation of net ecosystem exchange into assimilation and respiration using a light response curve approach: critical issues and global evaluation, Glob. Change Biol., 16, 187–208, 2010. a
Lasslop, G., Migliavacca, M., Bohrer, G., Reichstein, M., Bahn, M., Ibrom, A., Jacobs, C., Kolari, P., Papale, D., Vesala, T., Wohlfahrt, G., and Cescatti, A.: On the choice of the driving temperature for eddy-covariance carbon dioxide flux partitioning, Biogeosciences, 9, 5243–5259, https://doi.org/10.5194/bg-9-5243-2012, 2012. a
Launois, T., Belviso, S., Bopp, L., Fichot, C. G., and Peylin, P.: A new model for the global biogeochemical cycle of carbonyl sulfide – Part 1: Assessment of direct marine emissions with an oceanic general circulation and biogeochemistry model, Atmos. Chem. Phys., 15, 2295–2312, https://doi.org/10.5194/acp-15-2295-2015, 2015. a
Lintunen, A., Paljakka, T., Salmon, Y., Dewar, R., Riikonen, A., and Hölttä, T.: The influence of soil temperature and water content on belowground hydraulic conductance and leaf gas exchange in mature trees of three boreal species, Plant Cell Environ., 43, 532–547, https://doi.org/10.1111/pce.13709, 2020. a, b
Luo, Y., Keenan, T., and Smith, M.: Predictability of the terrestrial carbon cycle, Glob. Change Biol., 21, 1737–1751, 2015. a
Maignan, F., Abadie, C., Remaud, M., Kooijmans, L. M. J., Kohonen, K.-M., Commane, R., Wehr, R., Campbell, J. E., Belviso, S., Montzka, S. A., Raoult, N., Seibt, U., Shiga, Y. P., Vuichard, N., Whelan, M. E., and Peylin, P.: Carbonyl sulfide: comparing a mechanistic representation of the vegetation uptake in a land surface model and the leaf relative uptake approach, Biogeosciences, 18, 2917–2955, https://doi.org/10.5194/bg-18-2917-2021, 2021. a
Mäkelä, A., Pulkkinen, M., Kolari, P., Lagergren, F., Berbigier, P., Lindroth, A., Loustau, D., Nikinmaa, E., Vesala, T., and Hari, P.: Developing an empirical model of stand GPP with the LUE approach: analysis of eddy covariance data at five contrasting conifer sites in Europe, Glob. Change Biol., 14, 92–108, 2008. a
Mammarella, I., Peltola, O., Nordbo, A., Järvi, L., and Rannik, Ü.: Quantifying the uncertainty of eddy covariance fluxes due to the use of different software packages and combinations of processing steps in two contrasting ecosystems, Atmos. Meas. Tech., 9, 4915–4933, https://doi.org/10.5194/amt-9-4915-2016, 2016. a
Medlyn, B. E., Duursma, R., Eamus, D., Ellsworth, D., Prentice, I. C., Barton, C., Crous, K., De Angelis, P., Freeman, M., and Wingate, L.: Reconciling the optimal and empirical approaches to modelling stomatal conductance, Glob. Change Biol., 17, 2134–2144, https://doi.org/10.1111/j.1365-2486.2010.02375.x, 2011. a
Montzka, S., Calvert, P., Hall, B., Elkins, J., Conway, T., Tans, P., and Sweeney, C.: On the global distribution, seasonality, and budget of atmospheric carbonyl sulfide (COS) and some similarities to CO2, J. Geophys. Res.-Atmos., 112, D09302, https://doi.org/10.1029/2006JD007665, 2007. a
Papale, D.: Ideas and perspectives: enhancing the impact of the FLUXNET network of eddy covariance sites, Biogeosciences, 17, 5587–5598, https://doi.org/10.5194/bg-17-5587-2020, 2020. a
Papale, D., Reichstein, M., Aubinet, M., Canfora, E., Bernhofer, C., Kutsch, W., Longdoz, B., Rambal, S., Valentini, R., Vesala, T., and Yakir, D.: Towards a standardized processing of Net Ecosystem Exchange measured with eddy covariance technique: algorithms and uncertainty estimation, Biogeosciences, 3, 571–583, https://doi.org/10.5194/bg-3-571-2006, 2006. a
Piao, S., Ciais, P., Friedlingstein, P., Peylin, P., Reichstein, M., Luyssaert, S., Margolis, H., Fang, J., Barr, A., Chen, A., Grelle, A., Hollinger, D., Laurila, T., Lindroth, A., Richardson, A., and Vesala, T.: Net carbon dioxide losses of northern ecosystems in response to autumn warming, Nature, 451, 49–52, https://doi.org/10.1038/nature06444, 2008. a
Polishchuk, O.: Stress-related changes in the expression and activity of plant carbonic anhydrases, Planta, 253, 1–25, https://doi.org/10.1007/s00425-020-03553-5, 2021. a
Protoschill-Krebs, G., Wilhelm, C., and Kesselmeier, J.: Consumption of carbonyl sulphide (COS) by higher plant carbonic anhydrase (CA), Atmos. Environ., 30, 3151–3156, 1996. a
Reichstein, M., Falge, E., Baldocchi, D., Papale, D., Aubinet, M., Berbigier, P., Bernhofer, C., Buchmann, N., Gilmanov, T., Granier, A., Grünwald, T., Havránková, K., Ilvesniemi, H., Janous, D., Knohl, A., Laurila, T., Lohila, A., Loustau, D., Matteucci, G., Meyers, T., Miglietta, F., Ourcival, J. M., Pumpanen, J., Rambal, S., Rotenberg, E., Sanz, M., Tenhunen, J., Seufert, G., Vaccari, F., Vesala, T., Yakir, D., and Valentini, R.: On the separation of net ecosystem exchange into assimilation and ecosystem respiration: Review and improved algorithm, Glob. Change Biol., 11, 1424–1439, https://doi.org/10.1111/j.1365-2486.2005.001002.x, 2005. a
Salmon, Y., Lintunen, A., Dayet, A., Chan, T., Dewar, R., Vesala, T., and Hölttä, T.: Leaf carbon and water status control stomatal and nonstomatal limitations of photosynthesis in trees, New Phytol., 226, 690–703, https://doi.org/10.1111/nph.16436, 2020. a, b
Sandoval-Soto, L., Stanimirov, M., von Hobe, M., Schmitt, V., Valdes, J., Wild, A., and Kesselmeier, J.: Global uptake of carbonyl sulfide (COS) by terrestrial vegetation: Estimates corrected by deposition velocities normalized to the uptake of carbon dioxide (CO2), Biogeosciences, 2, 125–132, https://doi.org/10.5194/bg-2-125-2005, 2005. a, b
Spielmann, F., Wohlfahrt, G., Hammerle, A., Kitz, F., Migliavacca, M., Alberti, G., Ibrom, A., El-Madany, T. S., Gerdel, K., Moreno, G., Kolle, O., Karl, T., Peressotti, A., and Delle Vedove, G.: Gross primary productivity of four European ecosystems constrained by joint CO2 and COS flux measurements, Geophys. Res. Lett., 46, 5284–5293, 2019. a, b, c
Stimler, K., Montzka, S. A., Berry, J. A., Rudich, Y., and Yakir, D.: Relationships between carbonyl sulfide (COS) and CO2 during leaf gas exchange, New Phytol., 186, 869–878, 2010. a
Stimler, K., Berry, J. A., and Yakir, D.: Effects of Carbonyl Sulfide and Carbonic Anhydrase on Stomatal Conductance, Plant Physiol., 158, 524–530, https://doi.org/10.1104/pp.111.185926, 2012. a
Sun, W., Kooijmans, L. M. J., Maseyk, K., Chen, H., Mammarella, I., Vesala, T., Levula, J., Keskinen, H., and Seibt, U.: Soil fluxes of carbonyl sulfide (COS), carbon monoxide, and carbon dioxide in a boreal forest in southern Finland, Atmos. Chem. Phys., 18, 1363–1378, https://doi.org/10.5194/acp-18-1363-2018, 2018a. a, b
Sun, W., Maseyk, K., Lett, C., and Seibt, U.: Stomatal control of leaf fluxes of carbonyl sulfide and CO2 in a Typha freshwater marsh, Biogeosciences, 15, 3277–3291, https://doi.org/10.5194/bg-15-3277-2018, 2018b. a
Thornley, J. and Johnson, I.: Plant and crop modelling, The Blackburn Press, ISBN-10 1930665059, 1990. a
Tramontana, G., Migliavacca, M., Jung, M., Reichstein, M., Keenan, T. F., Camps-Valls, G., Ogee, J., Verrelst, J., and Papale, D.: Partitioning net carbon dioxide fluxes into photosynthesis and respiration using neural networks, Glob. Change Biol., 26, 5235–5253, https://doi.org/10.1111/gcb.15203, 2020. a, b, c, d, e, f, g, h
Vesala, T., Kohonen, K.-M., Kooijmans, L. M. J., Praplan, A. P., Foltýnová, L., Kolari, P., Kulmala, M., Bäck, J., Nelson, D., Yakir, D., Zahniser, M., and Mammarella, I.: Long-term fluxes of carbonyl sulfide and their seasonality and interannual variability in a boreal forest, Atmos. Chem. Phys., 22, 2569–2584, https://doi.org/10.5194/acp-22-2569-2022, 2022. a, b
Whelan, M. E., Lennartz, S. T., Gimeno, T. E., Wehr, R., Wohlfahrt, G., Wang, Y., Kooijmans, L. M. J., Hilton, T. W., Belviso, S., Peylin, P., Commane, R., Sun, W., Chen, H., Kuai, L., Mammarella, I., Maseyk, K., Berkelhammer, M., Li, K.-F., Yakir, D., Zumkehr, A., Katayama, Y., Ogée, J., Spielmann, F. M., Kitz, F., Rastogi, B., Kesselmeier, J., Marshall, J., Erkkilä, K.-M., Wingate, L., Meredith, L. K., He, W., Bunk, R., Launois, T., Vesala, T., Schmidt, J. A., Fichot, C. G., Seibt, U., Saleska, S., Saltzman, E. S., Montzka, S. A., Berry, J. A., and Campbell, J. E.: Reviews and syntheses: Carbonyl sulfide as a multi-scale tracer for carbon and water cycles, Biogeosciences, 15, 3625–3657, https://doi.org/10.5194/bg-15-3625-2018, 2018. a
Wohlfahrt, G., Bahn, M., Haslwanter, A., Newesely, C., and Cernusca, A.: Estimation of daytime ecosystem respiration to determine gross primary production of a mountain meadow, Agr. Forest Meteorol., 130, 13–25, https://doi.org/10.1016/j.agrformet.2005.02.001, 2005. a, b
Yang, F., Qubaja, R., Tatarinov, F., Rotenberg, E., and Yakir, D.: Assessing canopy performance using carbonyl sulfide measurements, Glob. Change Biol., 24, 3486–3498, https://doi.org/10.1111/gcb.14145, 2018. a, b, c
Yin, X., Niu, Y., van der Putten, P., and Struik, P.: The Kok effect revisited, New Phytol., 227, 1764–1775, https://doi.org/10.1111/nph.16638, 2020. a, b
Short summary
Four different methods for quantifying photosynthesis (GPP) at ecosystem scale were tested, of which two are based on carbon dioxide (CO2) and two on carbonyl sulfide (COS) flux measurements. CO2-based methods are traditional partitioning, and a new method uses machine learning. We introduce a novel method for calculating GPP from COS fluxes, with potentially better applicability than the former methods. Both COS-based methods gave on average higher GPP estimates than the CO2-based estimates.
Four different methods for quantifying photosynthesis (GPP) at ecosystem scale were tested, of...
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