Articles | Volume 11, issue 11
https://doi.org/10.5194/bg-11-2939-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-2939-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
05 Jun 2014
Research article |
| 05 Jun 2014
Examination of the role of the microbial loop in regulating lake nutrient stoichiometry and phytoplankton dynamics
Y. Li
Aquatic Ecodynamics, School of Earth & Environment, The University of Western Australia, Crawley WA 6009, Australia
Department of Ecology, Jinan University, Guangzhou 510632, China
School of Environmental Science & Engineering, Ocean University of China, Qingdao 266100, China.
G. Gal
Kinneret Limnological Laboratory, Israel Oceanographic and Limnological Research, Migdal 14950, Israel
V. Makler-Pick
Faculty of Civil and Environmental Engineering, Technion-Israel Institute of Technology, Haifa 32000, Israel
Oranim Academic College of Education, Kiryat Tivon 36006, Israel
A. M. Waite
The Oceans Institute, The University of Western Australia, Crawley WA 6009, Australia
current address: Alfred-Wegener-Institut Helmholtz-Zentrum für Polar- und Meeresforschung, Am Handelshafen 12, 27570 Bremerhaven, Germany
L. C. Bruce
Aquatic Ecodynamics, School of Earth & Environment, The University of Western Australia, Crawley WA 6009, Australia
The Oceans Institute, The University of Western Australia, Crawley WA 6009, Australia
M. R. Hipsey
Aquatic Ecodynamics, School of Earth & Environment, The University of Western Australia, Crawley WA 6009, Australia
The Oceans Institute, The University of Western Australia, Crawley WA 6009, Australia
Related authors
No articles found.
Malgorzata Golub, Wim Thiery, Rafael Marcé, Don Pierson, Inne Vanderkelen, Daniel Mercado-Bettin, R. Iestyn Woolway, Luke Grant, Eleanor Jennings, Benjamin M. Kraemer, Jacob Schewe, Fang Zhao, Katja Frieler, Matthias Mengel, Vasiliy Y. Bogomolov, Damien Bouffard, Marianne Côté, Raoul-Marie Couture, Andrey V. Debolskiy, Bram Droppers, Gideon Gal, Mingyang Guo, Annette B. G. Janssen, Georgiy Kirillin, Robert Ladwig, Madeline Magee, Tadhg Moore, Marjorie Perroud, Sebastiano Piccolroaz, Love Raaman Vinnaa, Martin Schmid, Tom Shatwell, Victor M. Stepanenko, Zeli Tan, Bronwyn Woodward, Huaxia Yao, Rita Adrian, Mathew Allan, Orlane Anneville, Lauri Arvola, Karen Atkins, Leon Boegman, Cayelan Carey, Kyle Christianson, Elvira de Eyto, Curtis DeGasperi, Maria Grechushnikova, Josef Hejzlar, Klaus Joehnk, Ian D. Jones, Alo Laas, Eleanor B. Mackay, Ivan Mammarella, Hampus Markensten, Chris McBride, Deniz Özkundakci, Miguel Potes, Karsten Rinke, Dale Robertson, James A. Rusak, Rui Salgado, Leon van der Linden, Piet Verburg, Danielle Wain, Nicole K. Ward, Sabine Wollrab, and Galina Zdorovennova
Geosci. Model Dev., 15, 4597–4623, https://doi.org/10.5194/gmd-15-4597-2022, https://doi.org/10.5194/gmd-15-4597-2022, 2022
Short summary
Short summary
Lakes and reservoirs are warming across the globe. To better understand how lakes are changing and to project their future behavior amidst various sources of uncertainty, simulations with a range of lake models are required. This in turn requires international coordination across different lake modelling teams worldwide. Here we present a protocol for and results from coordinated simulations of climate change impacts on lakes worldwide.
Peisheng Huang, Karl Hennig, Jatin Kala, Julia Andrys, and Matthew R. Hipsey
Hydrol. Earth Syst. Sci., 24, 5673–5697, https://doi.org/10.5194/hess-24-5673-2020, https://doi.org/10.5194/hess-24-5673-2020, 2020
Short summary
Short summary
Our results conclude that the climate change in the past decades has a remarkable effect on the hydrology of a large shallow lagoon with the same magnitude as that caused by the opening of an artificial channel, and it also highlighted the complexity of their interactions. We suggested that the consideration of the projected drying trend is essential in designing management plans associated with planning for environmental water provision and setting water quality loading targets.
Benya Wang, Matthew R. Hipsey, and Carolyn Oldham
Geosci. Model Dev., 13, 4253–4270, https://doi.org/10.5194/gmd-13-4253-2020, https://doi.org/10.5194/gmd-13-4253-2020, 2020
Short summary
Short summary
Surface water nutrients are essential to manage water quality, but it is hard to analyse trends. We developed a hybrid model and compared with other models for the prediction of six different nutrients. Our results showed that the hybrid model had significantly higher accuracy and lower prediction uncertainty for almost all nutrient species. The hybrid model provides a flexible method to combine data of varied resolution and quality and is accurate for the prediction of nutrient concentrations.
J. Nikolaus Callow, Matthew R. Hipsey, and Ryan I. J. Vogwill
Hydrol. Earth Syst. Sci., 24, 717–734, https://doi.org/10.5194/hess-24-717-2020, https://doi.org/10.5194/hess-24-717-2020, 2020
Short summary
Short summary
Secondary dryland salinity is a global land degradation issue. Our understanding of causal processes is adapted from wet and hydrologically connected landscapes and concludes that low end-of-catchment runoff indicates land clearing alters water balance in favour of increased infiltration and rising groundwater that bring salts to the surface causing salinity. This study shows surface flows play an important role in causing valley floor recharge and dryland salinity in low-gradient landscapes.
Matthew R. Hipsey, Louise C. Bruce, Casper Boon, Brendan Busch, Cayelan C. Carey, David P. Hamilton, Paul C. Hanson, Jordan S. Read, Eduardo de Sousa, Michael Weber, and Luke A. Winslow
Geosci. Model Dev., 12, 473–523, https://doi.org/10.5194/gmd-12-473-2019, https://doi.org/10.5194/gmd-12-473-2019, 2019
Short summary
Short summary
The General Lake Model (GLM) has been developed to undertake simulation of a diverse range of wetlands, lakes, and reservoirs. The model supports the science needs of the Global Lake Ecological Observatory Network (GLEON), a network of lake sensors and researchers attempting to understand lake functioning and address questions about how lakes around the world vary in response to climate and land use change. The paper describes the science basis and application of the model.
Amar V. V. Nanda, Leah Beesley, Luca Locatelli, Berry Gersonius, Matthew R. Hipsey, and Anas Ghadouani
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2017-307, https://doi.org/10.5194/hess-2017-307, 2017
Revised manuscript not accepted
Short summary
Short summary
When anthropological effects result in changes to wetland hydrology; this often leads to a decline in their ecological integrity. We present a policy oriented approach that assesses the suitability of management when rigorous ecological data are lacking. We link ecological objectives from management authorities to threshold values for water depth defined in policy. Results show insufficient water levels for key ecological objectives and we conclude that current policy is ineffective.
Y. Elshafei, M. Sivapalan, M. Tonts, and M. R. Hipsey
Hydrol. Earth Syst. Sci., 18, 2141–2166, https://doi.org/10.5194/hess-18-2141-2014, https://doi.org/10.5194/hess-18-2141-2014, 2014
L. C. Bruce, P. L. M. Cook, I. Teakle, and M. R. Hipsey
Hydrol. Earth Syst. Sci., 18, 1397–1411, https://doi.org/10.5194/hess-18-1397-2014, https://doi.org/10.5194/hess-18-1397-2014, 2014
S. E. Thompson, M. Sivapalan, C. J. Harman, V. Srinivasan, M. R. Hipsey, P. Reed, A. Montanari, and G. Blöschl
Hydrol. Earth Syst. Sci., 17, 5013–5039, https://doi.org/10.5194/hess-17-5013-2013, https://doi.org/10.5194/hess-17-5013-2013, 2013
A. M. Waite, V. Rossi, M. Roughan, B. Tilbrook, P. A. Thompson, M. Feng, A. S. J. Wyatt, and E. J. Raes
Biogeosciences, 10, 5691–5702, https://doi.org/10.5194/bg-10-5691-2013, https://doi.org/10.5194/bg-10-5691-2013, 2013
A. L. Ruibal-Conti, R. Summers, D. Weaver, and M. R. Hipsey
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-10-11035-2013, https://doi.org/10.5194/hessd-10-11035-2013, 2013
Revised manuscript not accepted
Related subject area
Biogeochemistry: Modelling, Aquatic
Killing the predator: impacts of highest-predator mortality on the global-ocean ecosystem structure
Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 1: roles of nutrient limitation and plankton community
Validation of the coupled physical–biogeochemical ocean model NEMO–SCOBI for the North Sea–Baltic Sea system
Investigating ecosystem connections in the shelf sea environment using complex networks
Global impact of benthic denitrification on marine N2 fixation and primary production simulated by a variable-stoichiometry Earth system model
Seasonal and interannual variability of the pelagic ecosystem and of the organic carbon budget in the Rhodes Gyre (eastern Mediterranean): influence of winter mixing
How much do bacterial growth properties and biodegradable dissolved organic matter control water quality at low flow?
Methane emissions from Arctic landscapes during 2000–2015: an analysis with land and lake biogeochemistry models
Including filter-feeding gelatinous macrozooplankton in a global marine biogeochemical model: model–data comparison and impact on the ocean carbon cycle
Riverine impact on future projections of marine primary production and carbon uptake
Subsurface oxygen maximum in oligotrophic marine ecosystems: mapping the interaction between physical and biogeochemical processes
Quantifying biological carbon pump pathways with a data-constrained mechanistic model ensemble approach
Assessing the spatial and temporal variability of methylmercury biogeochemistry and bioaccumulation in the Mediterranean Sea with a coupled 3D model
Hydrodynamic and biochemical impacts on the development of hypoxia in the Louisiana–Texas shelf – Part 2: statistical modeling and hypoxia prediction
Modelling the effects of benthic fauna on carbon, nitrogen and phosphorus dynamics in the Baltic Sea
Improved prediction of dimethyl sulfide (DMS) distributions in the northeast subarctic Pacific using machine-learning algorithms
Nutrient transport and transformation in macrotidal estuaries of the French Atlantic coast: a modeling approach using the Carbon-Generic Estuarine Model
A modelling study of temporal and spatial pCO2 variability on the biologically active and temperature-dominated Scotian Shelf
Modeling the marine chromium cycle: new constraints on global-scale processes
New insights into large-scale trends of apparent organic matter reactivity in marine sediments and patterns of benthic carbon transformation
Evaluation of ocean dimethylsulfide concentration and emission in CMIP6 models
Zooplankton mortality effects on the plankton community of the northern Humboldt Current System: sensitivity of a regional biogeochemical model
Multi-compartment kinetic–allometric (MCKA) model of radionuclide bioaccumulation in marine fish
Impact of bottom trawling on sediment biogeochemistry: a modelling approach
Cyanobacteria blooms in the Baltic Sea: a review of models and facts
Arctic Ocean acidification over the 21st century co-driven by anthropogenic carbon increases and freshening in the CMIP6 model ensemble
Modeling silicate–nitrate–ammonium co-limitation of algal growth and the importance of bacterial remineralization based on an experimental Arctic coastal spring bloom culture study
Role of jellyfish in the plankton ecosystem revealed using a global ocean biogeochemical model
Extreme event waves in marine ecosystems: an application to Mediterranean Sea surface chlorophyll
Use of optical absorption indices to assess seasonal variability of dissolved organic matter in Amazon floodplain lakes
The role of sediment-induced light attenuation on primary production during Hurricane Gustav (2008)
Quantifying spatiotemporal variability in zooplankton dynamics in the Gulf of Mexico with a physical–biogeochemical model
One size fits all? Calibrating an ocean biogeochemistry model for different circulations
Assessing the temporal scale of deep-sea mining impacts on sediment biogeochemistry
Seasonal patterns of surface inorganic carbon system variables in the Gulf of Mexico inferred from a regional high-resolution ocean biogeochemical model
Oxygen dynamics and evaluation of the single-station diel oxygen model across contrasting geologies
Oceanic CO2 outgassing and biological production hotspots induced by pre-industrial river loads of nutrients and carbon in a global modeling approach
Global trends in marine nitrate N isotopes from observations and a neural network-based climatology
Merging bio-optical data from Biogeochemical-Argo floats and models in marine biogeochemistry
Model constraints on the anthropogenic carbon budget of the Arctic Ocean
Modeling oceanic nitrate and nitrite concentrations and isotopes using a 3-D inverse N cycle model
Biogeochemical response of the Mediterranean Sea to the transient SRES-A2 climate change scenario
Modelling the biogeochemical effects of heterotrophic and autotrophic N2 fixation in the Gulf of Aqaba (Israel), Red Sea
A perturbed biogeochemistry model ensemble evaluated against in situ and satellite observations
Diazotrophy as the main driver of the oligotrophy gradient in the western tropical South Pacific Ocean: results from a one-dimensional biogeochemical–physical coupled model
Causes of simulated long-term changes in phytoplankton biomass in the Baltic proper: a wavelet analysis
Modelling N2 fixation related to Trichodesmium sp.: driving processes and impacts on primary production in the tropical Pacific Ocean
Long-term response of oceanic carbon uptake to global warming via physical and biological pumps
Seasonal patterns in phytoplankton biomass across the northern and deep Gulf of Mexico: a numerical model study
Sea-surface dimethylsulfide (DMS) concentration from satellite data at global and regional scales
David Talmy, Eric Carr, Harshana Rajakaruna, Selina Våge, and Anne Willem Omta
Biogeosciences, 21, 2493–2507, https://doi.org/10.5194/bg-21-2493-2024, https://doi.org/10.5194/bg-21-2493-2024, 2024
Short summary
Short summary
The structure of plankton communities is central to global cycles of carbon, nitrogen, and other elements. This study explored the sensitivity of different assumptions about highest-predator mortality in ecosystem models with contrasting food web structures. In the context of environmental data, we find support for models assuming a density-dependent mortality of the highest predator, irrespective of assumed food web structure.
Yanda Ou and Z. George Xue
Biogeosciences, 21, 2385–2424, https://doi.org/10.5194/bg-21-2385-2024, https://doi.org/10.5194/bg-21-2385-2024, 2024
Short summary
Short summary
Developed for the Gulf of Mexico (2006–2020), a 3D hydrodynamic–biogeochemical model validated against in situ data reveals the impact of nutrients and plankton diversity on dissolved oxygen dynamics. It highlights the role of physical processes, sediment oxygen consumption, and nutrient distribution in shaping bottom oxygen levels and hypoxia. The model underscores the importance of complex plankton interactions for understanding primary production and hypoxia evolution.
Itzel Ruvalcaba Baroni, Elin Almroth-Rosell, Lars Axell, Sam T. Fredriksson, Jenny Hieronymus, Magnus Hieronymus, Sandra-Esther Brunnabend, Matthias Gröger, Ivan Kuznetsov, Filippa Fransner, Robinson Hordoir, Saeed Falahat, and Lars Arneborg
Biogeosciences, 21, 2087–2132, https://doi.org/10.5194/bg-21-2087-2024, https://doi.org/10.5194/bg-21-2087-2024, 2024
Short summary
Short summary
The health of the Baltic and North seas is threatened due to high anthropogenic pressure; thus, different methods to assess the status of these regions are urgently needed. Here, we validated a novel model simulating the ocean dynamics and biogeochemistry of the Baltic and North seas that can be used to create future climate and nutrient scenarios, contribute to European initiatives on de-eutrophication, and provide water quality advice and support on nutrient load reductions for both seas.
Ieuan Higgs, Jozef Skákala, Ross Bannister, Alberto Carrassi, and Stefano Ciavatta
Biogeosciences, 21, 731–746, https://doi.org/10.5194/bg-21-731-2024, https://doi.org/10.5194/bg-21-731-2024, 2024
Short summary
Short summary
A complex network is a way of representing which parts of a system are connected to other parts. We have constructed a complex network based on an ecosystem–ocean model. From this, we can identify patterns in the structure and areas of similar behaviour. This can help to understand how natural, or human-made, changes will affect the shelf sea ecosystem, and it can be used in multiple future applications such as improving modelling, data assimilation, or machine learning.
Na Li, Christopher J. Somes, Angela Landolfi, Chia-Te Chien, Markus Pahlow, and Andreas Oschlies
EGUsphere, https://doi.org/10.5194/egusphere-2024-123, https://doi.org/10.5194/egusphere-2024-123, 2024
Short summary
Short summary
N is an important nutrient that limits phytoplankton growth in large parts of the ocean. The amount of oceanic N is governed by the balance of N2 fixation and denitrification. Here we incorporate benthic denitrification in an Earth system model with variable stoichiometry. Our model compares better to the observed surface nutrient distributions, marine N2 fixation and primary production. Benthic denitrification plays an important role in marine N and C cycling, and hence the global climate.
Joelle Habib, Caroline Ulses, Claude Estournel, Milad Fakhri, Patrick Marsaleix, Mireille Pujo-Pay, Marine Fourrier, Laurent Coppola, Alexandre Mignot, Laurent Mortier, and Pascal Conan
Biogeosciences, 20, 3203–3228, https://doi.org/10.5194/bg-20-3203-2023, https://doi.org/10.5194/bg-20-3203-2023, 2023
Short summary
Short summary
The Rhodes Gyre, eastern Mediterranean Sea, is the main Levantine Intermediate Water formation site. In this study, we use a 3D physical–biogeochemical model to investigate the seasonal and interannual variability of organic carbon dynamics in the gyre. Our results show its autotrophic nature and its high interannual variability, with enhanced primary production, downward exports, and onward exports to the surrounding regions during years marked by intense heat losses and deep mixed layers.
Masihullah Hasanyar, Thomas Romary, Shuaitao Wang, and Nicolas Flipo
Biogeosciences, 20, 1621–1633, https://doi.org/10.5194/bg-20-1621-2023, https://doi.org/10.5194/bg-20-1621-2023, 2023
Short summary
Short summary
The results of this study indicate that biodegradable dissolved organic matter is responsible for oxygen depletion at low flow during summer seasons when heterotrophic bacterial activity is so intense. Therefore, the dissolved organic matter must be well measured in the water monitoring networks in order to have more accurate water quality models. It also advocates for high-frequency data collection for better quantification of the uncertainties related to organic matter.
Xiangyu Liu and Qianlai Zhuang
Biogeosciences, 20, 1181–1193, https://doi.org/10.5194/bg-20-1181-2023, https://doi.org/10.5194/bg-20-1181-2023, 2023
Short summary
Short summary
We are among the first to quantify methane emissions from inland water system in the pan-Arctic. The total CH4 emissions are 36.46 Tg CH4 yr−1 during 2000–2015, of which wetlands and lakes were 21.69 Tg yr−1 and 14.76 Tg yr−1, respectively. By using two non-overlap area change datasets with land and lake models, our simulation avoids small lakes being counted twice as both lake and wetland, and it narrows the gap between two different methods used to quantify regional CH4 emissions.
Corentin Clerc, Laurent Bopp, Fabio Benedetti, Meike Vogt, and Olivier Aumont
Biogeosciences, 20, 869–895, https://doi.org/10.5194/bg-20-869-2023, https://doi.org/10.5194/bg-20-869-2023, 2023
Short summary
Short summary
Gelatinous zooplankton play a key role in the ocean carbon cycle. In particular, pelagic tunicates, which feed on a wide size range of prey, produce rapidly sinking detritus. Thus, they efficiently transfer carbon from the surface to the depths. Consequently, we added these organisms to a marine biogeochemical model (PISCES-v2) and evaluated their impact on the global carbon cycle. We found that they contribute significantly to carbon export and that this contribution increases with depth.
Shuang Gao, Jörg Schwinger, Jerry Tjiputra, Ingo Bethke, Jens Hartmann, Emilio Mayorga, and Christoph Heinze
Biogeosciences, 20, 93–119, https://doi.org/10.5194/bg-20-93-2023, https://doi.org/10.5194/bg-20-93-2023, 2023
Short summary
Short summary
We assess the impact of riverine nutrients and carbon (C) on projected marine primary production (PP) and C uptake using a fully coupled Earth system model. Riverine inputs alleviate nutrient limitation and thus lessen the projected PP decline by up to 0.7 Pg C yr−1 globally. The effect of increased riverine C may be larger than the effect of nutrient inputs in the future on the projected ocean C uptake, while in the historical period increased nutrient inputs are considered the largest driver.
Valeria Di Biagio, Stefano Salon, Laura Feudale, and Gianpiero Cossarini
Biogeosciences, 19, 5553–5574, https://doi.org/10.5194/bg-19-5553-2022, https://doi.org/10.5194/bg-19-5553-2022, 2022
Short summary
Short summary
The amount of dissolved oxygen in the ocean is the result of interacting physical and biological processes. Oxygen vertical profiles show a subsurface maximum in a large part of the ocean. We used a numerical model to map this subsurface maximum in the Mediterranean Sea and to link local differences in its properties to the driving processes. This emerging feature can help the marine ecosystem functioning to be better understood, also under the impacts of climate change.
Michael R. Stukel, Moira Décima, and Michael R. Landry
Biogeosciences, 19, 3595–3624, https://doi.org/10.5194/bg-19-3595-2022, https://doi.org/10.5194/bg-19-3595-2022, 2022
Short summary
Short summary
The biological carbon pump (BCP) transports carbon into the deep ocean, leading to long-term marine carbon sequestration. It is driven by many physical, chemical, and ecological processes. We developed a model of the BCP constrained using data from 11 cruises in 4 different ocean regions. Our results show that sinking particles and vertical mixing are more important than transport mediated by vertically migrating zooplankton. They also highlight the uncertainty in current estimates of the BCP.
Ginevra Rosati, Donata Canu, Paolo Lazzari, and Cosimo Solidoro
Biogeosciences, 19, 3663–3682, https://doi.org/10.5194/bg-19-3663-2022, https://doi.org/10.5194/bg-19-3663-2022, 2022
Short summary
Short summary
Methylmercury (MeHg) is produced and bioaccumulated in marine food webs, posing concerns for human exposure through seafood consumption. We modeled and analyzed the fate of MeHg in the lower food web of the Mediterranean Sea. The modeled spatial–temporal distribution of plankton bioaccumulation differs from the distribution of MeHg in surface water. We also show that MeHg exposure concentrations in temperate waters can be lowered by winter convection, which is declining due to climate change.
Yanda Ou, Bin Li, and Z. George Xue
Biogeosciences, 19, 3575–3593, https://doi.org/10.5194/bg-19-3575-2022, https://doi.org/10.5194/bg-19-3575-2022, 2022
Short summary
Short summary
Over the past decades, the Louisiana–Texas shelf has been suffering recurring hypoxia (dissolved oxygen < 2 mg L−1). We developed a novel prediction model using state-of-the-art statistical techniques based on physical and biogeochemical data provided by a numerical model. The model can capture both the magnitude and onset of the annual hypoxia events. This study also demonstrates that it is possible to use a global model forecast to predict regional ocean water quality.
Eva Ehrnsten, Oleg Pavlovitch Savchuk, and Bo Gustav Gustafsson
Biogeosciences, 19, 3337–3367, https://doi.org/10.5194/bg-19-3337-2022, https://doi.org/10.5194/bg-19-3337-2022, 2022
Short summary
Short summary
We studied the effects of benthic fauna, animals living on or in the seafloor, on the biogeochemical cycles of carbon, nitrogen and phosphorus using a model of the Baltic Sea ecosystem. By eating and excreting, the animals transform a large part of organic matter sinking to the seafloor into inorganic forms, which fuel plankton blooms. Simultaneously, when they move around (bioturbate), phosphorus is bound in the sediments. This reduces nitrogen-fixing plankton blooms and oxygen depletion.
Brandon J. McNabb and Philippe D. Tortell
Biogeosciences, 19, 1705–1721, https://doi.org/10.5194/bg-19-1705-2022, https://doi.org/10.5194/bg-19-1705-2022, 2022
Short summary
Short summary
The trace gas dimethyl sulfide (DMS) plays an important role in the ocean sulfur cycle and can also influence Earth’s climate. Our study used two statistical methods to predict surface ocean concentrations and rates of sea–air exchange of DMS in the northeast subarctic Pacific. Our results show improved predictive power over previous approaches and suggest that nutrient availability, light-dependent processes, and physical mixing may be important controls on DMS in this region.
Xi Wei, Josette Garnier, Vincent Thieu, Paul Passy, Romain Le Gendre, Gilles Billen, Maia Akopian, and Goulven Gildas Laruelle
Biogeosciences, 19, 931–955, https://doi.org/10.5194/bg-19-931-2022, https://doi.org/10.5194/bg-19-931-2022, 2022
Short summary
Short summary
Estuaries are key reactive ecosystems along the land–ocean aquatic continuum and are often strongly impacted by anthropogenic activities. We calculated nutrient in and out fluxes by using a 1-D transient model for seven estuaries along the French Atlantic coast. Among these, large estuaries with high residence times showed higher retention rates than medium and small ones. All reveal coastal eutrophication due to the excess of diffused nitrogen from intensive agricultural river basins.
Krysten Rutherford, Katja Fennel, Dariia Atamanchuk, Douglas Wallace, and Helmuth Thomas
Biogeosciences, 18, 6271–6286, https://doi.org/10.5194/bg-18-6271-2021, https://doi.org/10.5194/bg-18-6271-2021, 2021
Short summary
Short summary
Using a regional model of the northwestern North Atlantic shelves in combination with a surface water time series and repeat transect observations, we investigate surface CO2 variability on the Scotian Shelf. The study highlights a strong seasonal cycle in shelf-wide pCO2 and spatial variability throughout the summer months driven by physical events. The simulated net flux of CO2 on the Scotian Shelf is out of the ocean, deviating from the global air–sea CO2 flux trend in continental shelves.
Frerk Pöppelmeier, David J. Janssen, Samuel L. Jaccard, and Thomas F. Stocker
Biogeosciences, 18, 5447–5463, https://doi.org/10.5194/bg-18-5447-2021, https://doi.org/10.5194/bg-18-5447-2021, 2021
Short summary
Short summary
Chromium (Cr) is a redox-sensitive element that holds promise as a tracer of ocean oxygenation and biological activity. We here implemented the oxidation states Cr(III) and Cr(VI) in the Bern3D model to investigate the processes that shape the global Cr distribution. We find a Cr ocean residence time of 5–8 kyr and that the benthic source dominates the tracer budget. Further, regional model–data mismatches suggest strong Cr removal in oxygen minimum zones and a spatially variable benthic source.
Felipe S. Freitas, Philip A. Pika, Sabine Kasten, Bo B. Jørgensen, Jens Rassmann, Christophe Rabouille, Shaun Thomas, Henrik Sass, Richard D. Pancost, and Sandra Arndt
Biogeosciences, 18, 4651–4679, https://doi.org/10.5194/bg-18-4651-2021, https://doi.org/10.5194/bg-18-4651-2021, 2021
Short summary
Short summary
It remains challenging to fully understand what controls carbon burial in marine sediments globally. Thus, we use a model–data approach to identify patterns of organic matter reactivity at the seafloor across distinct environmental conditions. Our findings support the notion that organic matter reactivity is a dynamic ecosystem property and strongly influences biogeochemical cycling and exchange. Our results are essential to improve predictions of future changes in carbon cycling and climate.
Josué Bock, Martine Michou, Pierre Nabat, Manabu Abe, Jane P. Mulcahy, Dirk J. L. Olivié, Jörg Schwinger, Parvadha Suntharalingam, Jerry Tjiputra, Marco van Hulten, Michio Watanabe, Andrew Yool, and Roland Séférian
Biogeosciences, 18, 3823–3860, https://doi.org/10.5194/bg-18-3823-2021, https://doi.org/10.5194/bg-18-3823-2021, 2021
Short summary
Short summary
In this study we analyse surface ocean dimethylsulfide (DMS) concentration and flux to the atmosphere from four CMIP6 Earth system models over the historical and ssp585 simulations.
Our analysis of contemporary (1980–2009) climatologies shows that models better reproduce observations in mid to high latitudes. The models disagree on the sign of the trend of the global DMS flux from 1980 onwards. The models agree on a positive trend of DMS over polar latitudes following sea-ice retreat dynamics.
Mariana Hill Cruz, Iris Kriest, Yonss Saranga José, Rainer Kiko, Helena Hauss, and Andreas Oschlies
Biogeosciences, 18, 2891–2916, https://doi.org/10.5194/bg-18-2891-2021, https://doi.org/10.5194/bg-18-2891-2021, 2021
Short summary
Short summary
In this study we use a regional biogeochemical model of the eastern tropical South Pacific Ocean to implicitly simulate the effect that fluctuations in populations of small pelagic fish, such as anchovy and sardine, may have on the biogeochemistry of the northern Humboldt Current System. To do so, we vary the zooplankton mortality in the model, under the assumption that these fishes eat zooplankton. We also evaluate the model for the first time against mesozooplankton observations.
Roman Bezhenar, Kyeong Ok Kim, Vladimir Maderich, Govert de With, and Kyung Tae Jung
Biogeosciences, 18, 2591–2607, https://doi.org/10.5194/bg-18-2591-2021, https://doi.org/10.5194/bg-18-2591-2021, 2021
Short summary
Short summary
A new approach to predicting the accumulation of radionuclides in fish was developed by taking into account heterogeneity of distribution of contamination in the organism and dependence of metabolic process rates on the fish mass. Predicted concentrations of radionuclides in fish agreed well with the laboratory and field measurements. The model with the defined generic parameters could be used in marine environments without local calibration, which is important for emergency decision support.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Adriaan D. Rijnsdorp, and Karline Soetaert
Biogeosciences, 18, 2539–2557, https://doi.org/10.5194/bg-18-2539-2021, https://doi.org/10.5194/bg-18-2539-2021, 2021
Short summary
Short summary
Bottom trawling alters benthic mineralization: the recycling of organic material (OM) to free nutrients. To better understand how this occurs, trawling events were added to a model of seafloor OM recycling. Results show that bottom trawling reduces OM and free nutrients in sediments through direct removal thereof and of fauna which transport OM to deeper sediment layers protected from fishing. Our results support temporospatial trawl restrictions to allow key sediment functions to recover.
Britta Munkes, Ulrike Löptien, and Heiner Dietze
Biogeosciences, 18, 2347–2378, https://doi.org/10.5194/bg-18-2347-2021, https://doi.org/10.5194/bg-18-2347-2021, 2021
Short summary
Short summary
Cyanobacteria blooms can strongly aggravate eutrophication problems of water bodies. Their controls are, however, not comprehensively understood, which impedes effective management and protection plans. Here we review the current understanding of cyanobacteria blooms. Juxtaposition of respective field and laboratory studies with state-of-the-art mathematical models reveals substantial uncertainty associated with nutrient demands, grazing, and death of cyanobacteria.
Jens Terhaar, Olivier Torres, Timothée Bourgeois, and Lester Kwiatkowski
Biogeosciences, 18, 2221–2240, https://doi.org/10.5194/bg-18-2221-2021, https://doi.org/10.5194/bg-18-2221-2021, 2021
Short summary
Short summary
The uptake of carbon, emitted as a result of human activities, results in ocean acidification. We analyse 21st-century projections of acidification in the Arctic Ocean, a region of particular vulnerability, using the latest generation of Earth system models. In this new generation of models there is a large decrease in the uncertainty associated with projections of Arctic Ocean acidification, with freshening playing a greater role in driving acidification than previously simulated.
Tobias R. Vonnahme, Martial Leroy, Silke Thoms, Dick van Oevelen, H. Rodger Harvey, Svein Kristiansen, Rolf Gradinger, Ulrike Dietrich, and Christoph Völker
Biogeosciences, 18, 1719–1747, https://doi.org/10.5194/bg-18-1719-2021, https://doi.org/10.5194/bg-18-1719-2021, 2021
Short summary
Short summary
Diatoms are crucial for Arctic coastal spring blooms, and their growth is controlled by nutrients and light. At the end of the bloom, inorganic nitrogen or silicon can be limiting, but nitrogen can be regenerated by bacteria, extending the algal growth phase. Modeling these multi-nutrient dynamics and the role of bacteria is challenging yet crucial for accurate modeling. We recreated spring bloom dynamics in a cultivation experiment and developed a representative dynamic model.
Rebecca M. Wright, Corinne Le Quéré, Erik Buitenhuis, Sophie Pitois, and Mark J. Gibbons
Biogeosciences, 18, 1291–1320, https://doi.org/10.5194/bg-18-1291-2021, https://doi.org/10.5194/bg-18-1291-2021, 2021
Short summary
Short summary
Jellyfish have been included in a global ocean biogeochemical model for the first time. The global mean jellyfish biomass in the model is within the observational range. Jellyfish are found to play an important role in the plankton ecosystem, influencing community structure, spatiotemporal dynamics and biomass. The model raises questions about the sensitivity of the zooplankton community to jellyfish mortality and the interactions between macrozooplankton and jellyfish.
Valeria Di Biagio, Gianpiero Cossarini, Stefano Salon, and Cosimo Solidoro
Biogeosciences, 17, 5967–5988, https://doi.org/10.5194/bg-17-5967-2020, https://doi.org/10.5194/bg-17-5967-2020, 2020
Short summary
Short summary
Events that influence the functioning of the Earth’s ecosystems are of interest in relation to a changing climate. We propose a method to identify and characterise
wavesof extreme events affecting marine ecosystems for multi-week periods over wide areas. Our method can be applied to suitable ecosystem variables and has been used to describe different kinds of extreme event waves of phytoplankton chlorophyll in the Mediterranean Sea, by analysing the output from a high-resolution model.
Maria Paula da Silva, Lino A. Sander de Carvalho, Evlyn Novo, Daniel S. F. Jorge, and Claudio C. F. Barbosa
Biogeosciences, 17, 5355–5364, https://doi.org/10.5194/bg-17-5355-2020, https://doi.org/10.5194/bg-17-5355-2020, 2020
Short summary
Short summary
In this study, we analyze the seasonal changes in the dissolved organic matter (DOM) quality (based on its optical properties) in four Amazon floodplain lakes. DOM plays a fundamental role in surface water chemistry, controlling metal bioavailability and mobility, and nutrient cycling. The model proposed in our paper highlights the potential to study DOM quality at a wider spatial scale, which may help to better understand the persistence and fate of DOM in the ecosystem.
Zhengchen Zang, Z. George Xue, Kehui Xu, Samuel J. Bentley, Qin Chen, Eurico J. D'Sa, Le Zhang, and Yanda Ou
Biogeosciences, 17, 5043–5055, https://doi.org/10.5194/bg-17-5043-2020, https://doi.org/10.5194/bg-17-5043-2020, 2020
Taylor A. Shropshire, Steven L. Morey, Eric P. Chassignet, Alexandra Bozec, Victoria J. Coles, Michael R. Landry, Rasmus Swalethorp, Glenn Zapfe, and Michael R. Stukel
Biogeosciences, 17, 3385–3407, https://doi.org/10.5194/bg-17-3385-2020, https://doi.org/10.5194/bg-17-3385-2020, 2020
Short summary
Short summary
Zooplankton are the smallest animals in the ocean and important food for fish. Despite their importance, zooplankton have been relatively undersampled. To better understand the zooplankton community in the Gulf of Mexico (GoM), we developed a model to simulate their dynamics. We found that heterotrophic protists are important for supporting mesozooplankton, which are the primary prey of larval fish. The model developed in this study has the potential to improve fisheries management in the GoM.
Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
Short summary
Short summary
Constants of global biogeochemical ocean models are often tuned
by handto match observations of nutrients or oxygen. We investigate the effect of this tuning by optimising six constants of a global biogeochemical model, simulated in five different offline circulations. Optimal values for three constants adjust to distinct features of the circulation applied and can afterwards be swapped among the circulations, without losing too much of the model's fit to observed quantities.
Laura Haffert, Matthias Haeckel, Henko de Stigter, and Felix Janssen
Biogeosciences, 17, 2767–2789, https://doi.org/10.5194/bg-17-2767-2020, https://doi.org/10.5194/bg-17-2767-2020, 2020
Short summary
Short summary
Deep-sea mining for polymetallic nodules is expected to have severe environmental impacts. Through prognostic modelling, this study aims to provide a holistic assessment of the biogeochemical recovery after a disturbance event. It was found that the recovery strongly depends on the impact type; e.g. complete removal of the surface sediment reduces seafloor nutrient fluxes over centuries.
Fabian A. Gomez, Rik Wanninkhof, Leticia Barbero, Sang-Ki Lee, and Frank J. Hernandez Jr.
Biogeosciences, 17, 1685–1700, https://doi.org/10.5194/bg-17-1685-2020, https://doi.org/10.5194/bg-17-1685-2020, 2020
Short summary
Short summary
We use a numerical model to infer annual changes of surface carbon chemistry in the Gulf of Mexico (GoM). The main seasonality drivers of partial pressure of carbon dioxide and aragonite saturation state from the model are temperature and river runoff. The GoM basin is a carbon sink in winter–spring and carbon source in summer–fall, but uptake prevails near the Mississippi Delta year-round due to high biological production. Our model results show good correspondence with observational studies.
Simon J. Parker
Biogeosciences, 17, 305–315, https://doi.org/10.5194/bg-17-305-2020, https://doi.org/10.5194/bg-17-305-2020, 2020
Short summary
Short summary
Dissolved oxygen (DO) models typically assume constant ecosystem respiration over the course of a single day. Using a data-driven approach, this research examines this assumption in four streams across two (hydro-)geological types (Chalk and Greensand). Despite hydrogeological equivalence in terms of baseflow index for each hydrogeological pairing, model suitability differed within, rather than across, geology types. This corresponded with associated differences in timings of DO minima.
Fabrice Lacroix, Tatiana Ilyina, and Jens Hartmann
Biogeosciences, 17, 55–88, https://doi.org/10.5194/bg-17-55-2020, https://doi.org/10.5194/bg-17-55-2020, 2020
Short summary
Short summary
Contributions of rivers to the oceanic cycling of carbon have been poorly represented in global models until now. Here, we assess the long–term implications of preindustrial riverine loads in the ocean in a novel framework which estimates the loads through a hierarchy of weathering and land–ocean export models. We investigate their impacts for the oceanic biological production and air–sea carbon flux. Finally, we assess the potential incorporation of the framework in an Earth system model.
Patrick A. Rafter, Aaron Bagnell, Dario Marconi, and Timothy DeVries
Biogeosciences, 16, 2617–2633, https://doi.org/10.5194/bg-16-2617-2019, https://doi.org/10.5194/bg-16-2617-2019, 2019
Short summary
Short summary
The N isotopic composition of nitrate (
nitrate δ15N) is a useful tracer of ocean N cycling and many other ocean processes. Here, we use a global compilation of marine nitrate δ15N as an input, training, and validating dataset for an artificial neural network (a.k.a.,
machine learning) and examine basin-scale trends in marine nitrate δ15N from the surface to the seafloor.
Elena Terzić, Paolo Lazzari, Emanuele Organelli, Cosimo Solidoro, Stefano Salon, Fabrizio D'Ortenzio, and Pascal Conan
Biogeosciences, 16, 2527–2542, https://doi.org/10.5194/bg-16-2527-2019, https://doi.org/10.5194/bg-16-2527-2019, 2019
Short summary
Short summary
Measuring ecosystem properties in the ocean is a hard business. Recent availability of data from Biogeochemical-Argo floats can help make this task easier. Numerical models can integrate these new data in a coherent picture and can be used to investigate the functioning of ecosystem processes. Our new approach merges experimental information and model capabilities to quantitatively demonstrate the importance of light and water vertical mixing for algae dynamics in the Mediterranean Sea.
Jens Terhaar, James C. Orr, Marion Gehlen, Christian Ethé, and Laurent Bopp
Biogeosciences, 16, 2343–2367, https://doi.org/10.5194/bg-16-2343-2019, https://doi.org/10.5194/bg-16-2343-2019, 2019
Short summary
Short summary
A budget of anthropogenic carbon in the Arctic Ocean, the main driver of open-ocean acidification, was constructed for the first time using a high-resolution ocean model. The budget reveals that anthropogenic carbon enters the Arctic Ocean mainly by lateral transport; the air–sea flux plays a minor role. Coarser-resolution versions of the same model, typical of earth system models, store less anthropogenic carbon in the Arctic Ocean and thus underestimate ocean acidification in the Arctic Ocean.
Taylor S. Martin, François Primeau, and Karen L. Casciotti
Biogeosciences, 16, 347–367, https://doi.org/10.5194/bg-16-347-2019, https://doi.org/10.5194/bg-16-347-2019, 2019
Short summary
Short summary
Nitrite is a key intermediate in many nitrogen (N) cycling processes in the ocean, particularly in areas with low oxygen that are hotspots for N loss. We have created a 3-D global N cycle model with nitrite as a tracer. Stable isotopes of N are also included in the model and we are able to model the isotope fractionation associated with each N cycling process. Our model accurately represents N concentrations and isotope distributions in the ocean.
Camille Richon, Jean-Claude Dutay, Laurent Bopp, Briac Le Vu, James C. Orr, Samuel Somot, and François Dulac
Biogeosciences, 16, 135–165, https://doi.org/10.5194/bg-16-135-2019, https://doi.org/10.5194/bg-16-135-2019, 2019
Short summary
Short summary
We evaluate the effects of climate change and biogeochemical forcing evolution on the nutrient and plankton cycles of the Mediterranean Sea for the first time. We use a high-resolution coupled physical and biogeochemical model and perform 120-year transient simulations. The results indicate that changes in external nutrient fluxes and climate change may have synergistic or antagonistic effects on nutrient concentrations, depending on the region and the scenario.
Angela M. Kuhn, Katja Fennel, and Ilana Berman-Frank
Biogeosciences, 15, 7379–7401, https://doi.org/10.5194/bg-15-7379-2018, https://doi.org/10.5194/bg-15-7379-2018, 2018
Short summary
Short summary
Recent studies demonstrate that marine N2 fixation can be carried out without light. However, direct measurements of N2 fixation in dark environments are relatively scarce. This study uses a model that represents biogeochemical cycles at a deep-ocean location in the Gulf of Aqaba (Red Sea). Different model versions are used to test assumptions about N2 fixers. Relaxing light limitation for marine N2 fixers improved the similarity between model results and observations of deep nitrate and oxygen.
Prima Anugerahanti, Shovonlal Roy, and Keith Haines
Biogeosciences, 15, 6685–6711, https://doi.org/10.5194/bg-15-6685-2018, https://doi.org/10.5194/bg-15-6685-2018, 2018
Short summary
Short summary
Minor changes in the biogeochemical model equations lead to major dynamical changes. We assessed this structural sensitivity for the MEDUSA biogeochemical model on chlorophyll and nitrogen concentrations at five oceanographic stations over 10 years, using 1-D ensembles generated by combining different process equations. The ensemble performed better than the default model in most of the stations, suggesting that our approach is useful for generating a probabilistic biogeochemical ensemble model.
Audrey Gimenez, Melika Baklouti, Thibaut Wagener, and Thierry Moutin
Biogeosciences, 15, 6573–6589, https://doi.org/10.5194/bg-15-6573-2018, https://doi.org/10.5194/bg-15-6573-2018, 2018
Short summary
Short summary
During the OUTPACE cruise conducted in the oligotrophic to ultra-oligotrophic region of the western tropical South Pacific, two contrasted regions were sampled in terms of N2 fixation rates, primary production rates and nutrient availability. The aim of this work was to investigate the role of N2 fixation in the differences observed between the two contrasted areas by comparing two simulations only differing by the presence or not of N2 fixers using a 1-D biogeochemical–physical coupled model.
Jenny Hieronymus, Kari Eilola, Magnus Hieronymus, H. E. Markus Meier, Sofia Saraiva, and Bengt Karlson
Biogeosciences, 15, 5113–5129, https://doi.org/10.5194/bg-15-5113-2018, https://doi.org/10.5194/bg-15-5113-2018, 2018
Short summary
Short summary
This paper investigates how phytoplankton concentrations in the Baltic Sea co-vary with nutrient concentrations and other key variables on inter-annual timescales in a model integration over the years 1850–2008. The study area is not only affected by climate change; it has also been subjected to greatly increased nutrient loads due to extensive use of agricultural fertilizers. The results indicate the largest inter-annual coherence of phytoplankton with the limiting nutrient.
Cyril Dutheil, Olivier Aumont, Thomas Gorguès, Anne Lorrain, Sophie Bonnet, Martine Rodier, Cécile Dupouy, Takuhei Shiozaki, and Christophe Menkes
Biogeosciences, 15, 4333–4352, https://doi.org/10.5194/bg-15-4333-2018, https://doi.org/10.5194/bg-15-4333-2018, 2018
Short summary
Short summary
N2 fixation is recognized as one of the major sources of nitrogen in the ocean. Thus, N2 fixation sustains a significant part of the primary production (PP) by supplying the most common limiting nutrient for phytoplankton growth. From numerical simulations, the local maximums of Trichodesmium biomass in the Pacific are found around islands, explained by the iron fluxes from island sediments. We assessed that 15 % of the PP may be due to Trichodesmium in the low-nutrient, low-chlorophyll areas.
Akitomo Yamamoto, Ayako Abe-Ouchi, and Yasuhiro Yamanaka
Biogeosciences, 15, 4163–4180, https://doi.org/10.5194/bg-15-4163-2018, https://doi.org/10.5194/bg-15-4163-2018, 2018
Short summary
Short summary
Millennial-scale changes in oceanic CO2 uptake due to global warming are simulated by a GCM and offline biogeochemical model. Sensitivity studies show that decreases in oceanic CO2 uptake are mainly caused by a weaker biological pump and seawater warming. Enhanced CO2 uptake due to weaker equatorial upwelling cancels out reduced CO2 uptake due to weaker AMOC and AABW formation. Thus, circulation change plays only a small direct role in reduction of CO2 uptake due to global warming.
Fabian A. Gomez, Sang-Ki Lee, Yanyun Liu, Frank J. Hernandez Jr., Frank E. Muller-Karger, and John T. Lamkin
Biogeosciences, 15, 3561–3576, https://doi.org/10.5194/bg-15-3561-2018, https://doi.org/10.5194/bg-15-3561-2018, 2018
Short summary
Short summary
Seasonal patterns in nanophytoplankton and diatom biomass in the Gulf of Mexico were examined with an ocean–biogeochemical model. We found silica limitation of model diatom growth in the deep GoM and Mississippi delta. Zooplankton grazing and both transport and vertical mixing of biomass substantially influence the model phytoplankton biomass seasonality. We stress the need for integrated analyses of biologically and physically driven biomass fluxes to describe phytoplankton seasonal changes.
Martí Galí, Maurice Levasseur, Emmanuel Devred, Rafel Simó, and Marcel Babin
Biogeosciences, 15, 3497–3519, https://doi.org/10.5194/bg-15-3497-2018, https://doi.org/10.5194/bg-15-3497-2018, 2018
Short summary
Short summary
We developed a new algorithm to estimate the sea-surface concentration of dimethylsulfide (DMS) using satellite data. DMS is a gas produced by marine plankton that, once emitted to the atmosphere, plays a key climatic role by seeding cloud formation. We used the algorithm to produce global DMS maps and also regional DMS time series. The latter suggest that DMS can vary largely from one year to another, which should be taken into account in atmospheric studies.
Cited articles
Andersen,T., Elser, J., and Hessen, D.: Stoichiometry and population dynamics, Ecol. Lett., 7, 884–900, 2004.
Arhonditsis, G.B. and Brett, M.T.: Evaluation of the current state of mechanistic aquatic biogeochemical modelling, Mar. Ecol.-Prog. Ser., 271, 13–26, 2004.
Ballot, A., Ramm, J., Rundberget, T., Kaplan-Levy, R. N., Hadas, O., Sukenik, A., and Wiedner, C.: Occurrence of non-cylindrospermopsin-producing Aphanizomenon ovalisporum and Anabaena bergii in Lake Kinneret (Israel), J. Plankton. Res., 33, 1736–1746, 2011.
Barsdate, R. J., Prentki, R. T., and Fenchel, T.: Phosphorus cycle of model ecosystems: Significance for decomposer food chains and effect of bacterial grazers, Oikos, 25, 239–251, 1974.
Berman, T.: Uptake of (32P)orthophosphate by algae and bacteria in Lake Kinneret, J. Plankton. Res., 7, 71–84, 1985.
Berman, T.: Dissolved organic nitrogen utilization by an Alphanizomenon bloom in Lake Kinneret, J. Plankton. Res., 19, 577–586, 1997.
Berman, T.: The role of DON and the effect of N:P ratios on occurrence of cyanobacterial blooms: implications from the outgrowth of Aphanizomenon in Lake Kinneret, Limnol. Oceanogr., 46, 443–447, 2001.
Berman, T. and Bronk, D. A.: Dissolved organic nitrogen: a dynamic participant in aquatic ecosystems, Aquat. Microb. Ecol., 31, 279–305, 2003.
Berman, T., Parparov, A., and Yacobi, Y. Z.: Planktonic community production and respiration and the impact of bacteria on carbon cycling in the photic zone of Lake Kinneret, Aquat. Microb. Ecol., 34, 43–55, 2004.
Berman, T., Yacobi, Y.Z., Parparov, A., and Gal, G.: Estimation of long-term bacterial respiration and growth efficiency in Lake Kinneret, FEMS Microbiol. Ecol., 71, 351–363, 2010.
Bratbak, G. and Thingstad, T. F.: Phytoplankton-bacteria interactions-an apparent paradox-analysis of a model system with both competition and commensalism, Mar. Ecol.-Prog. Ser., 25, 23–30, 1985.
Bruce, L. C., Hamilton, D. P., Imberger, J., Gal, G., Gophen, M., Zohary, T., and Hambright, D.: A numerical simulation of the role of zooplankton in C, N and P cycling in Lake Kinneret, Israel, Ecol. Model., 193, 412–436, 2006.
Burger, D. F., Hamilton, D. P., and Pilditch, C. A.: Modelling the relative importance of internal and external nutrient loads on water column nutrient concentrations and phytoplankton biomass in a shallow polymictic lake, Ecol. Model., 211, 411–423, 2007.
Caron, D. A.: Inorganic nutrients, bacteria, and the microbial loop, Microb. Ecol., 28, 295–298, 1994.
Cole, J. J.: Aquatic microbiology for ecosystem scientists: new and recycled paradigms in ecological microbiology, Ecosystems, 2, 215–225, 1999.
Coveney, M. F. and Wetzel, R. G.: Effects of nutrients on specific growth rate of bacterioplankton in oligotrophic lake water cultures, Appl. Environ. Microb., 58, 150–156, 1992.
Danger, M., Oumarou, C., Benest, D., and Lacroix, G.: Bacteria can control stoichiometry and nutrient limitation of phytoplankton, Funct. Ecol., 21, 202–210, 2007.
Dolan, J. R.: Phosphorus and ammonia excretion by planktonic protists, Mar. Geol., 139, 109–122, 1997.
Elser J. J.: The pathway to noxious cyanobacterial blooms in lakes: the food web as the final turn, Freshw. Biol., 42, 537–543, 1999.
Elser, J. J. and Urabe, J.: The stoichiometry of consumer-driven nutrient recycling: Theory, observations, and consiquences, Ecology, 80, 735–751, 1999.
Elser, J. J., Bracken, M. E. S., Cleland, C. S., Gruner, G. S., Harpole, W. S., Hillebrand, H., Ngai, J. T., Seabloom, E. W., Shurin, J. B., and Smith, J. E.: Global analysis of nitrogen and phosphorus limitation of primary producers in freshwater, marine and terrestrial ecosystems, Ecol. Lett., 10, 1135–1142, 2007.
Faure, V., Pinazo, C., Torréton, J. P., and Jacquet, S.: Modelling the spatial and temporal variability of the SW lagoon of New Caledonia I: A new biogeochemical model based on microbial loop recycling, Mar. Pollut. Bull., 61, 465–79, 2010.
Fasham, M. J. R., Boyd, P. W., and Savidge, G.: Modeling the relative contributions of autotrophs and heterotrophs to carbon flow at a Lagrangian JGOFS station in the Northeast Atlantic: the importance of DOC, Limnol. Oceanogr., 44, 80–94, 1999.
Gaedke, U., Hochstadter, S., and Straile, D.: Interplay between energy limitation and nutritional deficiency: empirical data and food web models, Ecol. Monogr., 72, 251–270, 2002.
Gal, G., Imberger, J., Zohary, T., Antenucci, J. P., Anis, A., and Rosenberg, T.: Simulating the thermal dynamics of Lake Kinneret, Ecol. Model., 162, 69–86, 2003.
Gal, G., Hipsey, M. R., Parparov, A., Wagner, U., Makler, V., and Zohary, T.: Implementation of ecological modeling as an effective management and investigation tool: Lake Kinneret as a case study, Ecol. Model., 220, 1697–1718, 2009.
Gophen, M.: The cladoceran trophic status in the nitrogen limited ecosystem of lake Kinneret (Israel), J. Environ. Biol., 32, 455–462, 2011.
Gophen, M. and Azoulay, B.: The trophic status of zooplankton communities in lake Kinneret (Israel), Verh. Internat. Verein Limnol., 28, 836–839, 2002.
Hadas, O. and Berman, T.: Seasonal abundance and vertical distribution of Protozoa (flagellates, ciliates) and bacteria in Lake Kinneret, Israel, Aquat. Microb. Ecol., 14, 161–170, 1998.
Hambright, K. D., Zohary T., and Gude, H.: Microzooplankton dominate carbon flow and nutrient cycling in a warm subtropical freshwater lake, Limnol. Oceanogr., 52, 1018–1025, 2007.
Hambright, K. D., Zohary, T., Eckert, W., Eckert, S., Schwartz, S. S., Schelske, C. L., Laird, K., and Leavitt, P. R.: Exploitation and destabilization of a warm, freshwater ecosystem through engineered hydrological change, Ecol. Appl., 18, 1591–1603, 2008.
Hart, D. R., Stone, L., and Berman, T.: Seasonal dynamics of the Lake Kinneret food web: The importance of the microbial loop, Limnol. Oceanogr., 45, 350–361, 2000.
Hessen, D.: Stoichiometry in food webs – Lotka revisited, Oikos, 79, 195–200, 1997.
Hillmer, I., van Reenen, P., Imberger, J., and Zohary, T.: Phytoplankton patchiness and their role in the modelled productivity of a large, seasonally stratified lake, Ecol. Model., 218, 49–59, 2008.
Hipsey, M. R. and Hamilton, D. P.: The Computational Aquatic Ecosystem Dynamics Model (CAEDYM) – v3.3 Science Manual, Centre for Water Research, The University of Western Australia, 2008.
Janse, J. H., Aldenberg, T., and Kramer, P. R. G. : A mathematical model of the phosphorus cycle in Lake Loosdrecht and simulation of additional measures, Hydrobiologia, 233, 119–136, 1992.
Johannes, R. E.: Influence of marine protozoa on nutrient regeneration, Limnol. Oceanogr., 10, 434–442, 1965.
Joint, I., Henriksen, P., Fonnes, G. A., Bourne, D., Thingstad, T. F., and Riemann, B.: Competition for inorganic nutrients between phytoplankton and bacterioplankton in nutrient manipulated mesocosms, Aquat. Microb. Ecol., 29, 145–159, 2002.
Jorgensen, S. E. and Bendoricchio, G.: Fundamentals of ecological modeling, 3 Ed., Elsevier, 2001.
Kirchman, D. L.: The uptake of inorganic nutrients by heterotrophic bacteria, Microb. Ecol., 28, 255–271, 1994.
Li, Y., Waite, A. M., Gal, G., and Hipsey, M. R.: An analysis of the relationship between phytoplankton internal stoichiometry and water column N:P ratios in a dynamic lake environment, Ecol. Model., 252, 196–213, 2013.
Loladze, I., Kuang, Y., and Elser, J.: Stoichiometry in producer-grazer systems: Linking energy flow with element cycling, B. Math. Biol., 62, 1137–1162, 2000.
Makler-Pick, V., Gal, G., Gorfine, M., Hipsey, M. R., and Carmel, Y.: Sensitivity analysis for complex ecological models – A new approach, Environ. Modell. Softw., 26, 124–134, 2011a.
Makler-Pick, V., Gal, G., Shapiro, J., and Hipsey, M. R. : Exploring the role of fish in a lake ecosystem (Lake Kinneret, Israel) by coupling an individual-based fish population model to a dynamic ecosystem model, Can. J. Fish. Aquat. Sci., 68, 1265–1284, 2011b.
Mitra, A., Flynn, K. J., and Fasham, M. J. R.: Accounting for grazing dynamics in nitrogen-phytoplankton-zooplankton models, Limnol. Oceanogr., 52, 649–661, 2007.
Mooij, W. M., Trolle, D., Jeppesen, E., Arhonditsis, G., Belolipetsky, P., Chitamwebwa, D. B. R., Degermendzhy, A. G., DeAngelis, D. L., Senerpont Domis de, L. N., Downing, A. S., Elliott, J. A., Fragoso Jr., C. R., Gaedke, U., Genova, S. N., Gulati, R. D., Håkanson, L., Hamilton, D. P., Hipsey, M. R., Hoen, P. J., Hülsmann, S., Los, F. J., Makler-Pick, V., Petzoldt, T., Prokopkin, I., Rinke, K., Schep, S. A., Tominaga, K., Dam Van, A. A., Nes van, E. H., Wells, S. A., and Janse, J. H.: Challenges and opportunities for integrating lake ecosystem modelling approaches, Aquat. Ecol., 44, 633–667, 2010.
Moore, J. C., Berlow, E. L., Coleman, D. C., Ruiter, P. C., Dong, Q., Hastings, A., Johnson, N. C., McCann, K. S., Melville, K., Morin, P. J., Nadelhoffer, K., Rosemond, A. D., Post, D. M., Sabo, J. L., Scow, K. M., Vanni, M. J., and Wall, D. H.: Detritus, trophic dynamics and biodiversity, Ecol. Lett., 7, 584–600, 2004.
Muller, E., Nisbet, R., Koojman, S., Elser, J., and McCauley, E.: Stoichiometric food quality and herbivore dynamics, Ecol. Lett., 4, 519–529, 2001.
Ng, S., Antenucci, J. P., Hipsey, M. R., Tibor, G., Zohary, T.: Physical controls on the spatial evolution of a dinoflagellate bloom in a large lake, Limnol. Oceanogr., 56, 2265–2281, 2011.
Peduzzi, P. and Herndl, G. J.: Zooplankton activity fueling the microbial loop: Differential growth response of bacteria from oligotrophic and eutrophic waters, Limnol. Oceanogr., 37, 1087–1092, 1992.
Perhar, G., Arhonditsis, G. B., and Brett, M. T.: Modeling zooplankton growth in Lake Washington: A mechanistic approach to physiology in a eutrophication model, Ecol. Model., 258, 101–121, 2013.
Ptacnik, R., Andersen, T., and Tamminen, T.: Performance of the Redfield ratio and a family of nutrient limitation indicators as thresholds for phytoplankton N vs. P limitation, Ecosystems, 13, 1201–1214, 2010.
Recknagel, F., Ostrovsky, I., Caoa, H., Zohary, T., and Zhang, X.: Ecological relationships, thresholds and time-lags determining phytoplankton community dynamics of Lake Kinneret, Israel elucidated by evolutionary computation and wavelets, Ecol. Model., 255, 70–86, 2013.
Rigosi, A., Fleenor, W., and Rueda, F.: State-of-the-art and recent progress in phytoplankton succession modelling, Environ. Rev., 18, 423–440, 2010.
Roelke, D. L., Zohary, T., Hambright, D. K., and Montoya, J. V.: Alternative states in the phytoplankton of Lake Kinneret, Israel (Sea of Galilee), Freshw. Biol., 52, 399–411, 2007.
Saito, L., Johnson, B. M., Bartholow, J., and Hanna, R. B.: Assessing ecosystem effects of reservoir operations using food web-energy transfer and water quality models, Ecosystems, 4, 105–125, 2001.
Sterner, R. W. and Elser, J. J.: Ecological stoichiometry, Princeton University Press, New Jersey, 2002.
Stemberger, R. S. and Gilbert, J. J.: Body size, food concentration, and population growth in planktonic rotifers, Ecology, 66, 1151–1159, 1985.
Stone, L.: Phytoplankton-bacteria-protozoa interactions – a qualitative model portraying indirect effects, Mar. Ecol.-Prog. Ser., 64, 137–145, 1990.
Stone, L., Berman, T., Bonner, R., Barry, S., and Weeks, S. W.: Lake Kinneret: A seasonal model for carbon flux through the planktonic biota, Limnol. Oceanogr., 38, 1680–1695, 1993.
Thingstad, T. F., Bellerby, R. G. J., Bratbak, G., Børsheim, K. Y., Egge1, J. K., Heldal, M., Larsen, A., Neil, C., Nejstgaard, J., Norland, S., Sandaa, R. A., Skjoldal, E. F., Tanaka, T., Thyrhaug, R., and Töpper, B.: Counterintuitive carbon-to-nutrient coupling in an Arctic pelagic ecosystem, Nature, 455, 387–390, 2008.
Van Nes, E. H. and Scheffer, M.: A strategy to improve the contribution of complex simulation models to ecological theory, Ecol. Model., 185, 153–164, 2005.
Wang, H., Jiang, L., and Weitz, J. S.: Bacterivorous grazers facilitate organicmatter decomposition: a stoichiometric modeling approach, FEMS Microbio. Ecol., 69, 170–179, 2009.
Zohary, T., Pollingher, U., Hadas, O., and Hambright, K. D.: Bloom dynamics and sedimentation of Peridinium gatunense in Lake Kinneret, Limnol. Oceanogr., 43, 175–186, 1998.
Zohary, T.: Changes to the phytoplankton assemblage of Lake Kinneret after decades of a predictable, repetitive pattern, Freshw. Biol., 49, 1355–1371, 2004.
Altmetrics
Final-revised paper
Preprint