Articles | Volume 11, issue 19
https://doi.org/10.5194/bg-11-5335-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-5335-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
06 Oct 2014
Research article |
| 06 Oct 2014
Factors controlling shell carbon isotopic composition of land snail Acusta despecta sieboldiana estimated from laboratory culturing experiment
Department of Environmental Chemistry and Engineering, Tokyo Institute of Technology, Yokohama, Japan
K. Yamada
Department of Environmental Chemistry and Engineering, Tokyo Institute of Technology, Yokohama, Japan
N. Suzuki
Department of Geology and Paleontology, National Museum of Nature and Science, Tsukuba, Japan
N. Yoshida
Department of Environmental Chemistry and Engineering, Tokyo Institute of Technology, Yokohama, Japan
Earth-Life Science Institute, Tokyo Institute of Technology, Tokyo, Japan
Related authors
Sara M. Defratyka, Julianne M. Fernandez, Getachew A. Adnew, Guannan Dong, Peter M. J. Douglas, Daniel L. Eldridge, Giuseppe Etiope, Thomas Giunta, Mojhgan A. Haghnegahdar, Alexander N. Hristov, Nicole Hultquist, Iñaki Vadillo, Josue Jautzy, Ji-Hyun Kim, Jabrane Labidi, Ellen Lalk, Wil Leavitt, Jiawen Li, Li-Hung Lin, Jiarui Liu, Lucia Ojeda, Shuhei Ono, Jeemin Rhim, Thomas Röckmann, Barbara Sherwood Lollar, Malavika Sivan, Jiayang Sun, Gregory T. Ventura, David T. Wang, Edward D. Young, Naizhong Zhang, and Tim Arnold
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2025-41, https://doi.org/10.5194/essd-2025-41, 2025
Preprint under review for ESSD
Short summary
Short summary
Measurement of methane’s doubly substituted isotopologues at natural abundances holds promise for better constraining the Earth’s atmospheric CH4 budget. We compiled 1475 measurements from field samples and laboratory experiments, conducted since 2014, to facilitate the differentiation of CH4 formation pathways and processes, to identify existing gaps limiting application of Δ13CH3D and Δ12CH2D2, and to develop isotope ratio source signature inputs for global CH4 flux modelling.
Sara M. Defratyka, Julianne M. Fernandez, Getachew A. Adnew, Guannan Dong, Peter M. J. Douglas, Daniel L. Eldridge, Giuseppe Etiope, Thomas Giunta, Mojhgan A. Haghnegahdar, Alexander N. Hristov, Nicole Hultquist, Iñaki Vadillo, Josue Jautzy, Ji-Hyun Kim, Jabrane Labidi, Ellen Lalk, Wil Leavitt, Jiawen Li, Li-Hung Lin, Jiarui Liu, Lucia Ojeda, Shuhei Ono, Jeemin Rhim, Thomas Röckmann, Barbara Sherwood Lollar, Malavika Sivan, Jiayang Sun, Gregory T. Ventura, David T. Wang, Edward D. Young, Naizhong Zhang, and Tim Arnold
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2025-41, https://doi.org/10.5194/essd-2025-41, 2025
Preprint under review for ESSD
Short summary
Short summary
Measurement of methane’s doubly substituted isotopologues at natural abundances holds promise for better constraining the Earth’s atmospheric CH4 budget. We compiled 1475 measurements from field samples and laboratory experiments, conducted since 2014, to facilitate the differentiation of CH4 formation pathways and processes, to identify existing gaps limiting application of Δ13CH3D and Δ12CH2D2, and to develop isotope ratio source signature inputs for global CH4 flux modelling.
Kun Wang, Shohei Hattori, Mang Lin, Sakiko Ishino, Becky Alexander, Kazuki Kamezaki, Naohiro Yoshida, and Shichang Kang
Atmos. Chem. Phys., 21, 8357–8376, https://doi.org/10.5194/acp-21-8357-2021, https://doi.org/10.5194/acp-21-8357-2021, 2021
Short summary
Short summary
Sulfate aerosols play an important climatic role and exert adverse effects on the ecological environment and human health. In this study, we present the triple oxygen isotopic composition of sulfate from the Mt. Everest region, southern Tibetan Plateau, and decipher the formation mechanisms of atmospheric sulfate in this pristine environment. The results indicate the important role of the S(IV) + O3 pathway in atmospheric sulfate formation promoted by conditions of high cloud water pH.
Tamaki Fujinawa, Tomohiro O. Sato, Takayoshi Yamada, Seidai Nara, Yuki Uchiyama, Kodai Takahashi, Naohiro Yoshida, and Yasuko Kasai
Atmos. Meas. Tech., 13, 2119–2129, https://doi.org/10.5194/amt-13-2119-2020, https://doi.org/10.5194/amt-13-2119-2020, 2020
Short summary
Short summary
We performed an error analysis of SMILES observations for acetonitrile and a validation using the MLS observations by extracting the coincident points between SMILES and MLS data. The major error sources for the SMILES observations were quantitatively estimated. At upper pressure levels the difference between the two datasets increased because of an uncertainty in MLS observations. The results showed that SMILES has an advantage in measuring acetonitrile in the upper stratosphere and mesosphere.
Kazuki Kamezaki, Shohei Hattori, Enno Bahlmann, and Naohiro Yoshida
Atmos. Meas. Tech., 12, 1141–1154, https://doi.org/10.5194/amt-12-1141-2019, https://doi.org/10.5194/amt-12-1141-2019, 2019
Short summary
Short summary
Knowledge related to sulfur isotopic composition of carbonyl sulfide (OCS or COS), the most abundant atmospheric sulfur species, remains scarce. We present a new sampling system for collecting approx. 10 nmol of OCS from ambient air coupled with a purification system. The system presented herein is useful for application of sulfur isotopic compositions for investigation of OCS sources and sinks in the troposphere to elucidate its cycle and its contribution to background stratospheric sulfate.
Sakae Toyoda, Naohiro Yoshida, Shinji Morimoto, Shuji Aoki, Takakiyo Nakazawa, Satoshi Sugawara, Shigeyuki Ishidoya, Mitsuo Uematsu, Yoichi Inai, Fumio Hasebe, Chusaku Ikeda, Hideyuki Honda, and Kentaro Ishijima
Atmos. Chem. Phys., 18, 833–844, https://doi.org/10.5194/acp-18-833-2018, https://doi.org/10.5194/acp-18-833-2018, 2018
Short summary
Short summary
By analysis of whole air samples collected by balloon-borne compact cryogenic samplers, we found that apparent isotope effect for stratospheric N2O between 25 and 30 km over the Equator is larger than that observed in other latitudes and that it is almost equal to the effect predicted by laboratory simulation experiments. These results suggest that equatorial middle stratosphere can be treated as an isolated region when we consider the decomposition of N2O by photochemical processes.
Sakiko Ishino, Shohei Hattori, Joel Savarino, Bruno Jourdain, Susanne Preunkert, Michel Legrand, Nicolas Caillon, Albane Barbero, Kota Kuribayashi, and Naohiro Yoshida
Atmos. Chem. Phys., 17, 3713–3727, https://doi.org/10.5194/acp-17-3713-2017, https://doi.org/10.5194/acp-17-3713-2017, 2017
Short summary
Short summary
We show the first simultaneous observations of triple oxygen isotopic compositions of atmospheric sulfate, nitrate, and ozone at Dumont d'Urville, coastal Antarctica. The contrasting seasonal trends between oxygen isotopes of ozone and those of sulfate and nitrate indicate that these signatures in sulfate and nitrate are mainly controlled by changes in oxidation chemistry. We also discuss the specific oxidation chemistry induced by the unique phenomena at the site.
Sakae Toyoda and Naohiro Yoshida
Atmos. Meas. Tech., 9, 2093–2101, https://doi.org/10.5194/amt-9-2093-2016, https://doi.org/10.5194/amt-9-2093-2016, 2016
Short summary
Short summary
Tiny variation in natural abundance ratios of stable isotopes of nitrogen and oxygen in nitrous oxide (N2O) can be used as a fingerprint of this trace gas that causes greenhouse effect and stratospheric ozone depletion. Toward the understanding of the global budget of N2O and its temporal change, we developed an automated sample preparation system that can be used to measure the stable isotope ratios in N2O in various air samples collected into flasks with high precision and less labor.
Koki Maeda, Sakae Toyoda, Midori Yano, Shohei Hattori, Makoto Fukasawa, Keiichi Nakajima, and Naohiro Yoshida
Biogeosciences, 13, 1341–1349, https://doi.org/10.5194/bg-13-1341-2016, https://doi.org/10.5194/bg-13-1341-2016, 2016
Short summary
Short summary
Nitrogen isotope ratios (δ15N) of NH4+ in dairy manure compost piles were studied. The δ15N–NH4+ values in different pile zones (top, side and core) show that extremely high nitrogen conversion, nitrification–denitrification activity of the microbes and NH3 volatilization occurred in pile top zone, which has very high NH4+ concentrations and significantly high 15N (δ15N: 12.7–29.8 ‰) values.
K. Ishijima, M. Takigawa, K. Sudo, S. Toyoda, N. Yoshida, T. Röckmann, J. Kaiser, S. Aoki, S. Morimoto, S. Sugawara, and T. Nakazawa
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-15-19947-2015, https://doi.org/10.5194/acpd-15-19947-2015, 2015
Revised manuscript not accepted
Short summary
Short summary
We developed an atmospheric N2O isotopocule model based on a chemistry-coupled atmospheric general circulation model and a simple method to optimize the model, and estimated the isotopic signatures of surface sources at the hemispheric scale. Data obtained from ground-based observations, measurements of firn air, and balloon and aircraft flights were used to optimize the long-term trends, interhemispheric gradients, and photolytic fractionation, respectively, in the model.
T. Yamazaki, T. Hozuki, K. Arai, S. Toyoda, K. Koba, T. Fujiwara, and N. Yoshida
Biogeosciences, 11, 2679–2689, https://doi.org/10.5194/bg-11-2679-2014, https://doi.org/10.5194/bg-11-2679-2014, 2014
T. O. Sato, H. Sagawa, N. Yoshida, and Y. Kasai
Atmos. Meas. Tech., 7, 941–958, https://doi.org/10.5194/amt-7-941-2014, https://doi.org/10.5194/amt-7-941-2014, 2014
J. A. Schmidt, M. S. Johnson, S. Hattori, N. Yoshida, S. Nanbu, and R. Schinke
Atmos. Chem. Phys., 13, 1511–1520, https://doi.org/10.5194/acp-13-1511-2013, https://doi.org/10.5194/acp-13-1511-2013, 2013
Related subject area
Biogeochemistry: Stable Isotopes & Other Tracers
Sea ice and mixed layer depth influence on nitrate depletion and associated isotopic effects in the Drake Passage–Weddell Sea region, Southern Ocean
Stable iron isotope signals indicate a “pseudo-abiotic” process driving deep iron release in methanic sediments
Triple oxygen isotope evidence for the pathway of nitrous oxide production in a forested soil with increased emission on rainy days
Previous integrated or organic farming affects productivity and ecosystem N balance rather than fertilizer 15N allocation to plants and soil, leaching, or gaseous emissions (NH3, N2O, and N2)
How long does carbon stay in a near-pristine central Amazon forest? An empirical estimate with radiocarbon
No increase is detected and modeled for the seasonal cycle amplitude of δ13C of atmospheric carbon dioxide
Fungi present distinguishable isotopic signals when grown on glycolytic versus tricarboxylic acid cycle intermediates
Bias in calculating gross nitrification rates in forested catchments using the triple oxygen isotopic composition (Δ17O) of stream nitrate
Position-specific kinetic isotope effects for nitrous oxide: a new expansion of the Rayleigh model
Technical note: A Bayesian mixing model to unravel isotopic data and quantify trace gas production and consumption pathways for time series data – Time-resolved FRactionation And Mixing Evaluation (TimeFRAME)
Separating above-canopy CO2 and O2 measurements into their atmospheric and biospheric signatures
Climatic controls on leaf wax hydrogen isotope ratios in terrestrial and marine sediments along a hyperarid-to-humid gradient
Fractionation of stable carbon isotopes during microbial propionate consumption in anoxic rice paddy soils
Sources and sinks of carbonyl sulfide inferred from tower and mobile atmospheric observations in the Netherlands
Downpour dynamics: outsized impacts of storm events on unprocessed atmospheric nitrate export in an urban watershed
The hidden role of dissolved organic carbon in the biogeochemical cycle of carbon in modern redox-stratified lakes
Biogeochemical processes captured by carbon isotopes in redox-stratified water columns: a comparative study of four modern stratified lakes along an alkalinity gradient
Partitioning of carbon export in the euphotic zone of the oligotrophic South China Sea
Determination of respiration and photosynthesis fractionation factors for atmospheric dioxygen inferred from a vegetation–soil–atmosphere analogue of the terrestrial biosphere in closed chambers
Permafrost degradation and nitrogen cycling in Arctic rivers: insights from stable nitrogen isotope studies
Neodymium budget in the Mediterranean Sea: evaluating the role of atmospheric dusts using a high-resolution dynamical-biogeochemical model
Nitrate isotope investigations reveal future impacts of climate change on nitrogen inputs and cycling in Arctic fjords: Kongsfjorden and Rijpfjorden (Svalbard)
Mineralization of autochthonous particulate organic carbon is a fast channel of organic matter turnover in Germany's largest drinking water reservoir
Carbon isotopic ratios of modern C3 and C4 vegetation on the Indian peninsula and changes along the plant–soil–river continuum – implications for vegetation reconstructions
Controls on nitrite oxidation in the upper Southern Ocean: insights from winter kinetics experiments in the Indian sector
Tracing the source of nitrate in a forested stream showing elevated concentrations during storm events
Intra-skeletal variability in phosphate oxygen isotope composition reveals regional heterothermies in marine vertebrates
Isotopic differences in soil–plant–atmosphere continuum composition and control factors of different vegetation zones on the northern slope of the Qilian Mountains
An analysis of the variability in δ13C in macroalgae from the Gulf of California: indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation
Summertime productivity and carbon export potential in the Weddell Sea, with a focus on the waters adjacent to Larsen C Ice Shelf
Particulate biogenic barium tracer of mesopelagic carbon remineralization in the Mediterranean Sea (PEACETIME project)
Hydrogen and carbon isotope fractionation factors of aerobic methane oxidation in deep-sea water
Host-influenced geochemical signature in the parasitic foraminifera Hyrrokkin sarcophaga
Comparing modified substrate-induced respiration with selective inhibition (SIRIN) and N2O isotope approaches to estimate fungal contribution to denitrification in three arable soils under anoxic conditions
How are oxygen budgets influenced by dissolved iron and growth of oxygenic phototrophs in an iron-rich spring system? Initial results from the Espan Spring in Fürth, Germany
Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin
High-resolution 14C bomb peak dating and climate response analyses of subseasonal stable isotope signals in wood of the African baobab – a case study from Oman
Geographic variability in freshwater methane hydrogen isotope ratios and its implications for global isotopic source signatures
Seasonality of nitrogen sources, cycling, and loading in a New England river discerned from nitrate isotope ratios
Evaluating the response of δ13C in Haloxylon ammodendron, a dominant C4 species in Asian desert ecosystems, to water and nitrogen addition as well as the availability of its δ13C as an indicator of water use efficiency
Modern silicon dynamics of a small high-latitude subarctic lake
Radium-228-derived ocean mixing and trace element inputs in the South Atlantic
Nitrogen isotopic fractionations during nitric oxide production in an agricultural soil
Silicon uptake and isotope fractionation dynamics by crop species
Barium stable isotopes as a fingerprint of biological cycling in the Amazon River basin
Bottomland hardwood forest growth and stress response to hydroclimatic variation: evidence from dendrochronology and tree ring Δ13C values
N2O isotope approaches for source partitioning of N2O production and estimation of N2O reduction – validation with the 15N gas-flux method in laboratory and field studies
Technical note: Single-shell δ11B analysis of Cibicidoides wuellerstorfi using femtosecond laser ablation MC-ICPMS and secondary ion mass spectrometry
Biogeochemical evidence of anaerobic methane oxidation and anaerobic ammonium oxidation in a stratified lake using stable isotopes
Effects of 238U variability and physical transport on water column 234Th downward fluxes in the coastal upwelling system off Peru
Aymeric P. M. Servettaz, Yuta Isaji, Chisato Yoshikawa, Yanghee Jang, Boo-Keun Khim, Yeongjun Ryu, Daniel M. Sigman, Nanako O. Ogawa, Francisco J. Jiménez-Espejo, and Naohiko Ohkouchi
Biogeosciences, 22, 2239–2260, https://doi.org/10.5194/bg-22-2239-2025, https://doi.org/10.5194/bg-22-2239-2025, 2025
Short summary
Short summary
Phytoplankton blooms occur after sea ice retreats in the Southern Ocean. In this study we investigate the influence of seasonal cycle of sea ice concentration on nitrate depletion, testing the hypothesis that meltwater release stabilizes the water column and favors nutrient utilization. We find that, at a regional scale, nitrate depletion and vertical mixing are weakly correlated with sea ice cycle. Nitrate depletion is rather linked to other oceanographic processes controlling mixing depth.
Susann Henkel, Bo Liu, Michael Staubwasser, Simone A. Kasemann, Anette Meixner, David A. Aromokeye, Michael W. Friedrich, and Sabine Kasten
Biogeosciences, 22, 1673–1696, https://doi.org/10.5194/bg-22-1673-2025, https://doi.org/10.5194/bg-22-1673-2025, 2025
Short summary
Short summary
We intend to unravel iron (Fe) reduction pathways in high-deposition methanic sediments because pools of Fe minerals could stimulate methane oxidation and also generation. Our data from the North Sea show that Fe release takes place mechanistically differently to Fe reduction in shallow sediments, which typically fractionates Fe isotopes. We conclude that fermentation of organic matter involving interspecies electron transfer, partly through conductive Fe oxides, could play an important role.
Weitian Ding, Urumu Tsunogai, Tianzheng Huang, Takashi Sambuichi, Wenhua Ruan, Masanori Ito, Hao Xu, Yongwon Kim, and Fumiko Nakagawa
EGUsphere, https://doi.org/10.21203/rs.3.rs-4264720/v2, https://doi.org/10.21203/rs.3.rs-4264720/v2, 2025
Short summary
Short summary
Identifying the pathways of N2O produced through nitrification and denitrification in soil is crucial for effective mitigation. Thus, we monitored a new natural isotopic signature (Δ17O) of N2O in forested soil for identifying the pathways, which is almost stable during various biogeochemical processes. Our results suggest Δ17O is a promising signature for identifying pathways of N2O production, revealing that increased denitrification drives the high emission of N2O in soil on rainy days.
Fawad Khan, Samuel Franco Luesma, Frederik Hartmann, Michael Dannenmann, Rainer Gasche, Clemens Scheer, Andreas Gattinger, Wiebke Niether, Elizabeth Gachibu Wangari, Ricky Mwangada Mwanake, Ralf Kiese, and Benjamin Wolf
EGUsphere, https://doi.org/10.5194/egusphere-2025-292, https://doi.org/10.5194/egusphere-2025-292, 2025
Short summary
Short summary
Crop rotations with legumes and use of organic and mineral fertilizers show potential to reduce agricultural N losses. This study examined N losses, including direct N2 flux, on two adjacent sites with different management history: organic farming (OF) with legume cultivation and integrated farming (IF) using synthetic and organic N inputs. IF increased soil organic carbon and nitrogen content, 15N recovery and showed a balanced N budget, i.e., more efficient N cycling compared to OF.
Ingrid Chanca, Ingeborg Levin, Susan Trumbore, Kita Macario, Jost Lavric, Carlos Alberto Quesada, Alessandro Carioca de Araújo, Cléo Quaresma Dias Júnior, Hella van Asperen, Samuel Hammer, and Carlos A. Sierra
Biogeosciences, 22, 455–472, https://doi.org/10.5194/bg-22-455-2025, https://doi.org/10.5194/bg-22-455-2025, 2025
Short summary
Short summary
Assessing the net carbon (C) budget of the Amazon entails considering the magnitude and timing of C absorption and losses through respiration (transit time of C). Radiocarbon-based estimates of the transit time of C in the Amazon Tall Tower Observatory (ATTO) suggest a change in the transit time from 6 ± 2 years and 18 ± 4 years within 2 years (October 2019 and December 2021, respectively). This variability indicates that only a fraction of newly fixed C can be stored for decades or longer.
Fortunat Joos, Sebastian Lienert, and Sönke Zaehle
Biogeosciences, 22, 19–39, https://doi.org/10.5194/bg-22-19-2025, https://doi.org/10.5194/bg-22-19-2025, 2025
Short summary
Short summary
How plants regulate their exchange of CO2 and water with the atmosphere under global warming is critical for their carbon uptake and their cooling influence. We analyze the isotope ratio of atmospheric CO2 and detect no significant decadal trends in the seasonal cycle amplitude. The data are consistent with the regulation towards leaf CO2 and intrinsic water use efficiency growing proportionally to atmospheric CO2, in contrast to recent suggestions of downregulation of CO2 and water fluxes.
Stanislav Jabinski, Vítězslav Kučera, Marek Kopáček, Jan Jansa, and Travis B. Meador
EGUsphere, https://doi.org/10.5194/egusphere-2024-3153, https://doi.org/10.5194/egusphere-2024-3153, 2024
Short summary
Short summary
Microbial production is a key parameter in estimations of organic matter cycling in environmental systems, and fungi play a major role as decomposers. In order to investigate fungal production and turnover times in soils, we incubated fungal pure cultures with isotopically labelled water and bicarbonate to investigate growth signals encoded into lipid biomarkers, which can be applied to improve flux estimates in environmental studies.
Weitian Ding, Urumu Tsunogai, and Fumiko Nakagawa
Biogeosciences, 21, 4717–4722, https://doi.org/10.5194/bg-21-4717-2024, https://doi.org/10.5194/bg-21-4717-2024, 2024
Short summary
Short summary
Past studies have used the Δ17O of stream nitrate to estimate the gross nitrification rates (GNRs) in each forested catchment by approximating the Δ17O value of soil nitrate to be equal to that of stream nitrate. Based on inference and calculation of measured data, we found that this approximation resulted in an overestimated GNR. Therefore, it is essential to clarify and verify the Δ17O NO3− values in forested soils and streams before applying the Δ17O values of stream NO3− to GNR estimation.
Elise D. Rivett, Wenjuan Ma, Nathaniel E. Ostrom, and Eric L. Hegg
Biogeosciences, 21, 4549–4567, https://doi.org/10.5194/bg-21-4549-2024, https://doi.org/10.5194/bg-21-4549-2024, 2024
Short summary
Short summary
Many different processes produce nitrous oxide (N2O), a potent greenhouse gas. Measuring the ratio of heavy and light nitrogen isotopes (15N/14N) for the non-exchangeable central and outer N atoms of N2O helps to distinguish sources of N2O. To accurately calculate the position-specific isotopic preference, we developed an expansion of the widely used Rayleigh model. Application of our new model to simulated and experimental data demonstrates its improved accuracy for analyzing N2O synthesis.
Eliza Harris, Philipp Fischer, Maciej P. Lewicki, Dominika Lewicka-Szczebak, Stephen J. Harris, and Fernando Perez-Cruz
Biogeosciences, 21, 3641–3663, https://doi.org/10.5194/bg-21-3641-2024, https://doi.org/10.5194/bg-21-3641-2024, 2024
Short summary
Short summary
Greenhouse gases are produced and consumed via a number of pathways. Quantifying these pathways helps reduce the climate and environmental footprint of anthropogenic activities. The contribution of the pathways can be estimated from the isotopic composition, which acts as a fingerprint for these pathways. We have developed the Time-resolved FRactionation And Mixing Evaluation (TimeFRAME) model to simplify interpretation and estimate the contribution of different pathways and their uncertainty.
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
Biogeosciences, 21, 3015–3039, https://doi.org/10.5194/bg-21-3015-2024, https://doi.org/10.5194/bg-21-3015-2024, 2024
Short summary
Short summary
The ratio between atmospheric O2 and CO2 can be used to characterize the carbon balance at the surface. By combining a model and observations from the Hyytiälä forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange because large-scale processes such as entrainment confound this signal. We therefore recommend always using multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Nestor Gaviria-Lugo, Charlotte Läuchli, Hella Wittmann, Anne Bernhardt, Patrick Frings, Mahyar Mohtadi, Oliver Rach, and Dirk Sachse
Biogeosciences, 20, 4433–4453, https://doi.org/10.5194/bg-20-4433-2023, https://doi.org/10.5194/bg-20-4433-2023, 2023
Short summary
Short summary
We analyzed how leaf wax hydrogen isotopes in continental and marine sediments respond to climate along one of the strongest aridity gradients in the world, from hyperarid to humid, along Chile. We found that under extreme aridity, the relationship between hydrogen isotopes in waxes and climate is non-linear, suggesting that we should be careful when reconstructing past hydrological changes using leaf wax hydrogen isotopes so as to avoid overestimating how much the climate has changed.
Ralf Conrad and Peter Claus
Biogeosciences, 20, 3625–3635, https://doi.org/10.5194/bg-20-3625-2023, https://doi.org/10.5194/bg-20-3625-2023, 2023
Short summary
Short summary
Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Propionate is an important intermediate. In the presence of sulfate, it was degraded by Syntrophobacter species via acetate to CO2. In the absence of sulfate, it was mainly consumed by Smithella and methanogenic archaeal species via butyrate and acetate to CH4. However, stable carbon isotope fractionation during the degradation process was quite small.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Joel T. Bostic, David M. Nelson, and Keith N. Eshleman
Biogeosciences, 20, 2485–2498, https://doi.org/10.5194/bg-20-2485-2023, https://doi.org/10.5194/bg-20-2485-2023, 2023
Short summary
Short summary
Land-use changes can affect water quality. We used tracers of pollution sources and water flow paths to show that an urban watershed exports variable sources during storm events relative to a less developed watershed. Our results imply that changing precipitation patterns combined with increasing urbanization may alter sources of pollution in the future.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2405–2424, https://doi.org/10.5194/bg-20-2405-2023, https://doi.org/10.5194/bg-20-2405-2023, 2023
Short summary
Short summary
Dissolved organic carbon (DOC) is a reservoir of prime importance in the C cycle of both continental and marine systems. It has also been suggested to influence the past Earth climate but is still poorly characterized in ancient-Earth-like environments. In this paper we show how DOC analyses from modern redox-stratified lakes can evidence specific metabolic reactions and environmental factors and how these can help us to interpret the C cycle of specific periods in the Earth's past.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2347–2367, https://doi.org/10.5194/bg-20-2347-2023, https://doi.org/10.5194/bg-20-2347-2023, 2023
Short summary
Short summary
We describe the C cycle of four modern stratified water bodies from Mexico, a necessary step to better understand the C cycle of primitive-Earth-like environments, which were dominated by these kinds of conditions. We highlight the importance of local external factors on the C cycle of these systems. Notably, they influence the sensitivity of the carbonate record to environmental changes. We also show the strong C-cycle variability among these lakes and their organic C sediment record.
Yifan Ma, Kuanbo Zhou, Weifang Chen, Junhui Chen, Jin-Yu Terence Yang, and Minhan Dai
Biogeosciences, 20, 2013–2030, https://doi.org/10.5194/bg-20-2013-2023, https://doi.org/10.5194/bg-20-2013-2023, 2023
Short summary
Short summary
We distinguished particulate organic carbon (POC) export fluxes out of the nutrient-depleted layer (NDL) and the euphotic zone. The amount of POC export flux at the NDL base suggests that the NDL could be a hotspot of particle export. The substantial POC export flux at the NDL base challenges traditional concepts that the NDL was limited in terms of POC export. The dominant nutrient source for POC export fluxes should be subsurface nutrients, which was determined by 15N isotopic mass balance.
Clémence Paul, Clément Piel, Joana Sauze, Nicolas Pasquier, Frédéric Prié, Sébastien Devidal, Roxanne Jacob, Arnaud Dapoigny, Olivier Jossoud, Alexandru Milcu, and Amaëlle Landais
Biogeosciences, 20, 1047–1062, https://doi.org/10.5194/bg-20-1047-2023, https://doi.org/10.5194/bg-20-1047-2023, 2023
Short summary
Short summary
To improve the interpretation of the δ18Oatm and Δ17O of O2 in air bubbles in ice cores, we need to better quantify the oxygen fractionation coefficients associated with biological processes. We performed a simplified analogue of the terrestrial biosphere in a closed chamber. We found a respiration fractionation in agreement with the previous estimates at the microorganism scale, and a terrestrial photosynthetic fractionation was found. This has an impact on the estimation of the Dole effect.
Adam Francis, Raja S. Ganeshram, Robyn E. Tuerena, Robert G. M. Spencer, Robert M. Holmes, Jennifer A. Rogers, and Claire Mahaffey
Biogeosciences, 20, 365–382, https://doi.org/10.5194/bg-20-365-2023, https://doi.org/10.5194/bg-20-365-2023, 2023
Short summary
Short summary
Climate change is causing extensive permafrost degradation and nutrient releases into rivers with great ecological impacts on the Arctic Ocean. We focused on nitrogen (N) release from this degradation and associated cycling using N isotopes, an understudied area. Many N species are released at degradation sites with exchanges between species. N inputs from permafrost degradation and seasonal river N trends were identified using isotopes, helping to predict climate change impacts.
Mohamed Ayache, Jean-Claude Dutay, Kazuyo Tachikawa, Thomas Arsouze, and Catherine Jeandel
Biogeosciences, 20, 205–227, https://doi.org/10.5194/bg-20-205-2023, https://doi.org/10.5194/bg-20-205-2023, 2023
Short summary
Short summary
The neodymium (Nd) is one of the most useful tracers to fingerprint water mass provenance. However, the use of Nd is hampered by the lack of adequate quantification of the external sources. Here, we present the first simulation of dissolved Nd concentration and Nd isotopic composition in the Mediterranean Sea using a high-resolution model. We aim to better understand how the various external sources affect the Nd cycle and particularly assess how it is impacted by atmospheric inputs.
Marta Santos-Garcia, Raja S. Ganeshram, Robyn E. Tuerena, Margot C. F. Debyser, Katrine Husum, Philipp Assmy, and Haakon Hop
Biogeosciences, 19, 5973–6002, https://doi.org/10.5194/bg-19-5973-2022, https://doi.org/10.5194/bg-19-5973-2022, 2022
Short summary
Short summary
Terrestrial sources of nitrate are important contributors to the nutrient pool in the fjords of Kongsfjorden and Rijpfjorden in Svalbard during the summer, and they sustain most of the fjord primary productivity. Ongoing tidewater glacier retreat is postulated to favour light limitation and less dynamic circulation in fjords. This is suggested to encourage the export of nutrients to the middle and outer part of the fjord system, which may enhance primary production within and in offshore areas.
Marlene Dordoni, Michael Seewald, Karsten Rinke, Kurt Friese, Robert van Geldern, Jakob Schmidmeier, and Johannes A. C. Barth
Biogeosciences, 19, 5343–5355, https://doi.org/10.5194/bg-19-5343-2022, https://doi.org/10.5194/bg-19-5343-2022, 2022
Short summary
Short summary
Organic matter (OM) turnover into dissolved inorganic carbon (DIC) was investigated by means of carbon isotope mass balances in Germany's largest water reservoir. This includes a metalimnetic oxygen minimum (MOM). Autochthonous particulate organic carbon (POC) was the main contributor to DIC, with rates that were highest for the MOM. Generally low turnover rates outline the environmental fragility of this water body in the case that OM loads increase due to storm events or land use changes.
Frédérique M. S. A. Kirkels, Hugo J. de Boer, Paulina Concha Hernández, Chris R. T. Martes, Marcel T. J. van der Meer, Sayak Basu, Muhammed O. Usman, and Francien Peterse
Biogeosciences, 19, 4107–4127, https://doi.org/10.5194/bg-19-4107-2022, https://doi.org/10.5194/bg-19-4107-2022, 2022
Short summary
Short summary
The distinct carbon isotopic values of C3 and C4 plants are widely used to reconstruct past hydroclimate, where more C3 plants reflect wetter and C4 plants drier conditions. Here we examine the impact of regional hydroclimatic conditions on plant isotopic values in the Godavari River basin, India. We find that it is crucial to identify regional plant isotopic values and consider drought stress, which introduces a bias in C3 / C4 plant estimates and associated hydroclimate reconstructions.
Mhlangabezi Mdutyana, Tanya Marshall, Xin Sun, Jessica M. Burger, Sandy J. Thomalla, Bess B. Ward, and Sarah E. Fawcett
Biogeosciences, 19, 3425–3444, https://doi.org/10.5194/bg-19-3425-2022, https://doi.org/10.5194/bg-19-3425-2022, 2022
Short summary
Short summary
Nitrite-oxidizing bacteria in the winter Southern Ocean show a high affinity for nitrite but require a minimum (i.e., "threshold") concentration before they increase their rates of nitrite oxidation significantly. The classic Michaelis–Menten model thus cannot be used to derive the kinetic parameters, so a modified equation was employed that also yields the threshold nitrite concentration. Dissolved iron availability may play an important role in limiting nitrite oxidation.
Weitian Ding, Urumu Tsunogai, Fumiko Nakagawa, Takashi Sambuichi, Hiroyuki Sase, Masayuki Morohashi, and Hiroki Yotsuyanagi
Biogeosciences, 19, 3247–3261, https://doi.org/10.5194/bg-19-3247-2022, https://doi.org/10.5194/bg-19-3247-2022, 2022
Short summary
Short summary
Excessive leaching of nitrate from forested catchments during storm events degrades water quality and causes eutrophication in downstream areas. Thus, tracing the source of nitrate increase during storm events in forested streams is important for sustainable forest management. Based on the isotopic compositions of stream nitrate, including Δ17O, this study clarifies that the source of stream nitrate increase during storm events was soil nitrate in the riparian zone.
Nicolas Séon, Romain Amiot, Guillaume Suan, Christophe Lécuyer, François Fourel, Fabien Demaret, Arnauld Vinçon-Laugier, Sylvain Charbonnier, and Peggy Vincent
Biogeosciences, 19, 2671–2681, https://doi.org/10.5194/bg-19-2671-2022, https://doi.org/10.5194/bg-19-2671-2022, 2022
Short summary
Short summary
We analysed the oxygen isotope composition of bones and teeth of four marine species possessing regional heterothermies. We observed a consistent link between oxygen isotope composition and temperature heterogeneities recorded by classical methods. This opens up new perspectives on the determination of the thermoregulatory strategies of extant marine vertebrates where conventional methods are difficult to apply, but also allows us to investigate thermophysiologies of extinct vertebrates.
Yuwei Liu, Guofeng Zhu, Zhuanxia Zhang, Zhigang Sun, Leilei Yong, Liyuan Sang, Lei Wang, and Kailiang Zhao
Biogeosciences, 19, 877–889, https://doi.org/10.5194/bg-19-877-2022, https://doi.org/10.5194/bg-19-877-2022, 2022
Short summary
Short summary
We took the water cycle process of soil–plant–atmospheric precipitation as the research objective. In the water cycle of soil–plant–atmospheric precipitation, precipitation plays the main controlling role. The main source of replenishment for alpine meadow plants is precipitation and alpine meltwater; the main source of replenishment for forest plants is soil water; and the plants in the arid foothills mainly use groundwater.
Roberto Velázquez-Ochoa, María Julia Ochoa-Izaguirre, and Martín Federico Soto-Jiménez
Biogeosciences, 19, 1–27, https://doi.org/10.5194/bg-19-1-2022, https://doi.org/10.5194/bg-19-1-2022, 2022
Short summary
Short summary
Our research is the first approximation to understand the δ13C macroalgal variability in one of the most diverse marine ecosystems in the world, the Gulf of California. The life-form is the principal cause of δ13C macroalgal variability, mainly taxonomy. However, changes in habitat characteristics and environmental conditions also influence the δ13C macroalgal variability. The δ13C macroalgae is indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation.
Raquel F. Flynn, Thomas G. Bornman, Jessica M. Burger, Shantelle Smith, Kurt A. M. Spence, and Sarah E. Fawcett
Biogeosciences, 18, 6031–6059, https://doi.org/10.5194/bg-18-6031-2021, https://doi.org/10.5194/bg-18-6031-2021, 2021
Short summary
Short summary
Biological activity in the shallow Weddell Sea affects the biogeochemistry of recently formed deep waters. To investigate the drivers of carbon and nutrient export, we measured rates of primary production and nitrogen uptake, characterized the phytoplankton community, and estimated nutrient depletion ratios across the under-sampled western Weddell Sea in mid-summer. Carbon export was highest at the ice shelves and was determined by a combination of physical, chemical, and biological factors.
Stéphanie H. M. Jacquet, Christian Tamburini, Marc Garel, Aurélie Dufour, France Van Vambeke, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 5891–5902, https://doi.org/10.5194/bg-18-5891-2021, https://doi.org/10.5194/bg-18-5891-2021, 2021
Short summary
Short summary
We compared carbon remineralization rates (MRs) in the western and central Mediterranean Sea in late spring during the PEACETIME cruise, as assessed using the barium tracer. We reported higher and deeper (up to 1000 m depth) MRs in the western basin, potentially sustained by an additional particle export event driven by deep convection. The central basin is the site of a mosaic of blooming and non-blooming water masses and showed lower MRs that were restricted to the upper mesopelagic layer.
Shinsuke Kawagucci, Yohei Matsui, Akiko Makabe, Tatsuhiro Fukuba, Yuji Onishi, Takuro Nunoura, and Taichi Yokokawa
Biogeosciences, 18, 5351–5362, https://doi.org/10.5194/bg-18-5351-2021, https://doi.org/10.5194/bg-18-5351-2021, 2021
Short summary
Short summary
Hydrogen and carbon isotope ratios of methane as well as the relevant biogeochemical parameters and microbial community compositions in hydrothermal plumes in the Okinawa Trough were observed. We succeeded in simultaneously determining hydrogen and carbon isotope fractionation factors associated with aerobic oxidation of methane in seawater (εH = 49.4 ± 5.0 ‰, εC = 5.2 ± 0.4 ‰) – the former being the first of its kind ever reported.
Nicolai Schleinkofer, David Evans, Max Wisshak, Janina Vanessa Büscher, Jens Fiebig, André Freiwald, Sven Härter, Horst R. Marschall, Silke Voigt, and Jacek Raddatz
Biogeosciences, 18, 4733–4753, https://doi.org/10.5194/bg-18-4733-2021, https://doi.org/10.5194/bg-18-4733-2021, 2021
Short summary
Short summary
We have measured the chemical composition of the carbonate shells of the parasitic foraminifera Hyrrokkin sarcophaga in order to test if it is influenced by the host organism (bivalve or coral). We find that both the chemical and isotopic composition is influenced by the host organism. For example strontium is enriched in foraminifera that grew on corals, whose skeleton is built from aragonite, which is naturally enriched in strontium compared to the bivalves' calcite shell.
Lena Rohe, Traute-Heidi Anderson, Heinz Flessa, Anette Goeske, Dominika Lewicka-Szczebak, Nicole Wrage-Mönnig, and Reinhard Well
Biogeosciences, 18, 4629–4650, https://doi.org/10.5194/bg-18-4629-2021, https://doi.org/10.5194/bg-18-4629-2021, 2021
Short summary
Short summary
This is the first experimental setup combining a complex set of methods (microbial inhibitors and isotopic approaches) to differentiate between N2O produced by fungi or bacteria during denitrification in three soils. Quantifying the fungal fraction with inhibitors was not successful due to large amounts of uninhibited N2O production. All successful methods suggested a small or missing fungal contribution. Artefacts occurring with microbial inhibition to determine N2O fluxes are discussed.
Inga Köhler, Raul E. Martinez, David Piatka, Achim J. Herrmann, Arianna Gallo, Michelle M. Gehringer, and Johannes A. C. Barth
Biogeosciences, 18, 4535–4548, https://doi.org/10.5194/bg-18-4535-2021, https://doi.org/10.5194/bg-18-4535-2021, 2021
Short summary
Short summary
We investigated how high Fe(II) levels influence the O2 budget of a circum-neutral Fe(II)-rich spring and if a combined study of dissolved O (DO) and its isotopic composition can help assess this effect. We showed that dissolved Fe(II) can exert strong effects on the δ18ODO even though a constant supply of atmospheric O2 occurs. In the presence of photosynthesis, direct effects of Fe oxidation become masked. Critical Fe(II) concentrations indirectly control the DO by enhancing photosynthesis.
Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast
Biogeosciences, 18, 4491–4510, https://doi.org/10.5194/bg-18-4491-2021, https://doi.org/10.5194/bg-18-4491-2021, 2021
Short summary
Short summary
Pacific water flowing eastward through the Canadian Arctic plays an important role in redistributing nutrients to the northwest Atlantic Ocean. Using samples collected from northern Baffin Bay to the southern Labrador Shelf, we show that stable isotopic ratios in seawater nitrate reflect the fraction of Pacific to Atlantic water. These results provide a new framework for interpreting patterns of nitrogen isotopic variability recorded in modern and archival organic materials in the region.
Franziska Slotta, Lukas Wacker, Frank Riedel, Karl-Uwe Heußner, Kai Hartmann, and Gerhard Helle
Biogeosciences, 18, 3539–3564, https://doi.org/10.5194/bg-18-3539-2021, https://doi.org/10.5194/bg-18-3539-2021, 2021
Short summary
Short summary
The African baobab is a challenging climate and environmental archive for its semi-arid habitat due to dating uncertainties and parenchyma-rich wood anatomy. Annually resolved F14C data of tree-ring cellulose (1941–2005) from a tree in Oman show the annual character of the baobab’s growth rings but were up to 8.8 % lower than expected for 1964–1967. Subseasonal δ13C and δ18O patterns reveal years with low average monsoon rain as well as heavy rainfall events from pre-monsoonal cyclones.
Peter M. J. Douglas, Emerald Stratigopoulos, Sanga Park, and Dawson Phan
Biogeosciences, 18, 3505–3527, https://doi.org/10.5194/bg-18-3505-2021, https://doi.org/10.5194/bg-18-3505-2021, 2021
Short summary
Short summary
Hydrogen isotopes could be a useful tool to help resolve the geographic distribution of methane emissions from freshwater environments. We analyzed an expanded global dataset of freshwater methane hydrogen isotope ratios and found significant geographic variation linked to water isotopic composition. This geographic variability could be used to resolve changing methane fluxes from freshwater environments and provide more accurate estimates of the relative balance of global methane sources.
Veronica R. Rollinson, Julie Granger, Sydney C. Clark, Mackenzie L. Blanusa, Claudia P. Koerting, Jamie M. P. Vaudrey, Lija A. Treibergs, Holly C. Westbrook, Catherine M. Matassa, Meredith G. Hastings, and Craig R. Tobias
Biogeosciences, 18, 3421–3444, https://doi.org/10.5194/bg-18-3421-2021, https://doi.org/10.5194/bg-18-3421-2021, 2021
Short summary
Short summary
We measured nutrients and the naturally occurring nitrogen (N) and oxygen (O) stable isotope ratios of nitrate discharged from a New England river over an annual cycle, to monitor N loading and identify dominant sources from the watershed. We uncovered a seasonality to loading and sources of N from the watershed. Seasonality in the nitrate isotope ratios also informed on N cycling, conforming to theoretical expectations of riverine nutrient cycling.
Zixun Chen, Xuejun Liu, Xiaoqing Cui, Yaowen Han, Guoan Wang, and Jiazhu Li
Biogeosciences, 18, 2859–2870, https://doi.org/10.5194/bg-18-2859-2021, https://doi.org/10.5194/bg-18-2859-2021, 2021
Short summary
Short summary
δ13C in plants is a sensitive long-term indicator of physiological acclimatization. The present study suggests that precipitation change and increasing atmospheric N deposition have little impact on δ13C of H. ammodendron, a dominant plant in central Asian deserts, but affect its gas exchange. In addition, this study shows that δ13C of H. ammodendron could not indicate its water use efficiency (WUE), suggesting that whether δ13C of C4 plants indicates WUE is species-specific.
Petra Zahajská, Carolina Olid, Johanna Stadmark, Sherilyn C. Fritz, Sophie Opfergelt, and Daniel J. Conley
Biogeosciences, 18, 2325–2345, https://doi.org/10.5194/bg-18-2325-2021, https://doi.org/10.5194/bg-18-2325-2021, 2021
Short summary
Short summary
The drivers of high accumulation of single-cell siliceous algae (diatoms) in a high-latitude lake have not been fully characterized before. We studied silicon cycling of the lake through water, radon, silicon, and stable silicon isotope balances. Results showed that groundwater brings 3 times more water and dissolved silica than the stream inlet. We demonstrate that groundwater discharge and low sediment deposition have driven the high diatom accumulation in the studied lake in the past century.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671, https://doi.org/10.5194/bg-18-1645-2021, https://doi.org/10.5194/bg-18-1645-2021, 2021
Short summary
Short summary
The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Zhongjie Yu and Emily M. Elliott
Biogeosciences, 18, 805–829, https://doi.org/10.5194/bg-18-805-2021, https://doi.org/10.5194/bg-18-805-2021, 2021
Short summary
Short summary
In this study, we demonstrated distinct nitrogen isotope effects for nitric oxide (NO) production from major microbial and chemical NO sources in an agricultural soil. These results highlight characteristic bond-forming and breaking mechanisms associated with microbial and chemical NO production and implicate that simultaneous isotopic analyses of NO and nitrous oxide (N2O) can lead to unprecedented insights into the sources and processes controlling NO and N2O emissions from agricultural soils.
Daniel A. Frick, Rainer Remus, Michael Sommer, Jürgen Augustin, Danuta Kaczorek, and Friedhelm von Blanckenburg
Biogeosciences, 17, 6475–6490, https://doi.org/10.5194/bg-17-6475-2020, https://doi.org/10.5194/bg-17-6475-2020, 2020
Short summary
Short summary
Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Quentin Charbonnier, Julien Bouchez, Jérôme Gaillardet, and Éric Gayer
Biogeosciences, 17, 5989–6015, https://doi.org/10.5194/bg-17-5989-2020, https://doi.org/10.5194/bg-17-5989-2020, 2020
Short summary
Short summary
The abundance and isotope composition of the trace metal barium (Ba) allows us to track and quantify nutrient cycling throughout the Amazon Basin. In particular, we show that the Ba biological fingerprint evolves from that of a strong net nutrient uptake in the mountainous area of the Andes towards efficient nutrient recycling on the plains of the Lower Amazon. Our study highlights the fact that the geochemical signature of rock-derived nutrients transported by the Amazon is scarred by life.
Ajinkya G. Deshpande, Thomas W. Boutton, Ayumi Hyodo, Charles W. Lafon, and Georgianne W. Moore
Biogeosciences, 17, 5639–5653, https://doi.org/10.5194/bg-17-5639-2020, https://doi.org/10.5194/bg-17-5639-2020, 2020
Short summary
Short summary
Wetland forests in the southern USA are threatened by changing climate and human-induced pressures. We used tree ring widths and C isotopes as indicators of forest growth and physiological stress, respectively, and compared these to past climate data. We observed that vegetation growing in the drier patches is susceptible to stress, while vegetation growth and physiology in wetter patches is less sensitive to unfavorable environmental conditions, highlighting the importance of optimal wetness.
Dominika Lewicka-Szczebak, Maciej Piotr Lewicki, and Reinhard Well
Biogeosciences, 17, 5513–5537, https://doi.org/10.5194/bg-17-5513-2020, https://doi.org/10.5194/bg-17-5513-2020, 2020
Short summary
Short summary
We present the first validation of N2O isotopic approaches for estimating N2O source pathways and N2O reduction. These approaches are widely used for tracing soil nitrogen cycling, but the results of these estimations are very uncertain. Here we report the results from parallel treatments allowing for precise validation of these approaches, and we propose the best strategies for results interpretation, including the new idea of an isotope model integrating three isotopic signatures of N2O.
Markus Raitzsch, Claire Rollion-Bard, Ingo Horn, Grit Steinhoefel, Albert Benthien, Klaus-Uwe Richter, Matthieu Buisson, Pascale Louvat, and Jelle Bijma
Biogeosciences, 17, 5365–5375, https://doi.org/10.5194/bg-17-5365-2020, https://doi.org/10.5194/bg-17-5365-2020, 2020
Short summary
Short summary
The isotopic composition of boron in carbonate shells of marine unicellular organisms is a popular tool to estimate seawater pH. Usually, many shells need to be dissolved and measured for boron isotopes, but the information on their spatial distribution is lost. Here, we investigate two techniques that allow for measuring boron isotopes within single shells and show that they yield robust mean values but provide additional information on the heterogeneity within and between single shells.
Florian Einsiedl, Anja Wunderlich, Mathieu Sebilo, Ömer K. Coskun, William D. Orsi, and Bernhard Mayer
Biogeosciences, 17, 5149–5161, https://doi.org/10.5194/bg-17-5149-2020, https://doi.org/10.5194/bg-17-5149-2020, 2020
Short summary
Short summary
Nitrate pollution of freshwaters and methane emissions into the atmosphere are crucial factors in deteriorating the quality of drinking water and in contributing to global climate change. Here, we report vertical concentration and stable isotope profiles of CH4, NO3-, NO2-, and NH4+ in the water column of Fohnsee (southern Bavaria, Germany) that may indicate linkages between nitrate-dependent anaerobic methane oxidation and the anaerobic oxidation of ammonium.
Ruifang C. Xie, Frédéric A. C. Le Moigne, Insa Rapp, Jan Lüdke, Beat Gasser, Marcus Dengler, Volker Liebetrau, and Eric P. Achterberg
Biogeosciences, 17, 4919–4936, https://doi.org/10.5194/bg-17-4919-2020, https://doi.org/10.5194/bg-17-4919-2020, 2020
Short summary
Short summary
Thorium-234 (234Th) is widely used to study carbon fluxes from the surface ocean to depth. But few studies stress the relevance of oceanic advection and diffusion on the downward 234Th fluxes in nearshore environments. Our study in offshore Peru showed strong temporal variations in both the importance of physical processes on 234Th flux estimates and the oceanic residence time of 234Th, whereas salinity-derived seawater 238U activities accounted for up to 40 % errors in 234Th flux estimates.
Cited articles
Azuma, M.: Land Snails of Japan, Hoikusha Publishing Co., Osaka, 1995.
Balakrishnan, M. and Yapp, C. J.: Flux balance models for the oxygen and carbon isotope compositions of land snail shells, Geochim. Cosmochim. Acta, 68, 2007–2024, 2004.
Baldini, L. M., Walker, S. E., Railsback, L. B., Baldini, J. U., and Crowe, D. E.: Isotopic ecology of the modern land snail Cerion, San Salvador, Bahamas: Preliminary advances toward establishing a low-latitude island paleoenvironmental proxy, Palaios, 22, 174–187. 2007.
Balslev-Clausen, D., Dahl, T. W., Saad, N., and Rosing, M. T.: Precise and accurate δ13C analysis of rock samples using Flash Combustion–Cavity Ring Down Laser Spectroscopy, J. Anal. Atmos. Spectrom., 28, 516–523, 2013.
Barnhart, M. C. and McMahon, B. R.: Discontinuous carbon dioxide release and metabolic depression in dormant land snails, J. Exp. Biol., 128, 123–138, 1987.
Baur, A., Baur, B., and Fröberg, L.: Herbivory on calcicolous lichens: different food preferences and growth rates in two co-existing land snails, Oecologia, 98, 313–319, 1994.
Colonese, A. C., Zanchetta, G., Fallick, A. E., Martini, F., Manganelli, G., and Lo-Vetro, D.: Stable isotope composition of Late Glacial land snail shells from Grotta del Romito (Southern Italy): palaeoclimatic implications, Palaeogeogr. Palaeocl., 254, 550–560, 2007.
Colonese, A. C., Zanchetta, G., Fallick, A. E., Martini, F., Manganelli, G., and Drysdale, R. N.: Stable isotope composition of Helix ligata<\i> (Müller, 1774) from Late Pleistocene–Holocene archaeological record from Grotta della Serratura (Southern Italy): Palaeoclimatic implications, Global Planet Change, 71, 249–257, 2010.
Colonese, A. C., Zanchetta, G., Drysdale, R. N., Fallick, A. E., Manganelli, G., Lo-Vetro, D., Martini, F., and Di Giuseppe, Z.: Stable isotope composition of Late Pleistocene-Holocene Eobania vermiculata<\i> (Müller, 1774) (Pulmonata, Stylommatophora) shells from the Central Mediterranean Basin: Data from Grotta d'Oriente (Favignana, Sicily), Quatern. Int., 244, 76–87, 2011.
Colonese, A. C., Zanchetta, G., Fallick, A. E., Manganelli, G., Lo Cascio, P., Hausmann, N., Baneschi, I., and Regattieri, E.: Oxygen and carbon isotopic composition of modern terrestrial gastropod shells from Lipari Island, Aeolian Archipelago (Sicily), Palaeogeogr. Palaeocl., 394, 119–127, 2014.
Coplen, T. B., Brand, W. A., Gehre, M., Gröning, M., Meijer, H. A., Toman, B., and Verkouteren, R. M.: New guidelines for δ13C measurements, Anal. Chem., 78, 2439–2441, 2006.
DeNiro, M. J. and Epstein, S.: Influence of diet on the distribution of carbon isotopes in animals, Geochim. Cosmochim. Acta, 42, 495–506, 1978.
Egonmwan, R. I.: Effects of dietary calcium on growth and oviposition of the African land snail Limicolaria flammea<\i> (Pulmonata: Achatinidae), Rev. Biol. Trop., 56, 333–343, 2008.
Francey, R. J.: A comment on 13C/12C in land snail shells, Earth Planet. Sci. Lett., 63, 142–143, 1983.
Fujie, A.: Holocene fossil assemblages of minute land molluscs from sand dunes on Kikaijima Island in the Amami Archipelago, Japan, Jpn. J. Malacol., 59, 317–324, 2000a (in Japanese).
Fujie. A.: The late Pleistocene fossil assemblages of minute land molluscs from an ancient sand dune on Kikaijima Island in the Amami Archipelago, Jpn. J. Malacol., 59, 165–175, 2000b (in Japanese).
Goodfriend, G. A.: The use of land snail shells in paleoenvironmental reconstruction, Quaternary Sci. Rev., 11, 665–685, 1992.
Goodfriend, G. A. and Ellis, G. L.: Stable carbon and oxygen isotopic variations in modern Rabdotus land snail shells in the southern Great Plains, USA, and their relation to environment, Geochim. Cosmochim. Acta, 66, 1987–2002, 2002.
Goodfriend, G. A. and Hood, D. G.: Carbon isotope analysis of land snail shells; implications for carbon sources and radiocarbon dating, Radiocarbon, 25, 810–830, 1983.
Goodfriend, G. A. and Magaritz, M.: Carbon and oxygen isotope composition of shell carbonate of desert land snails, Earth Planet. Sci. Lett., 86, 377–388, 1987.
Goodfriend, G. A. and Stipp, J. J.: Limestone and the problem of radiocarbon dating of land-snail shell carbonate, Geology, 11, 575–577, 1983.
Goodfriend, G. A., Magaritz, M., and Gat, J. R.: Stable isotope composition of land snail body water and its relation to environmental waters and shell carbonate, Geochim. Cosmochim. Acta, 53, 3215–3221, 1989.
Hatziioannou, M., Eleutheriadis, N., and Lazaridou-Dimitriadou, M.: Food preferences and dietary overlap by terrestrial snails in Logos area (Edessa, Macedonia, Northern Greece), J. Mollus. Stud., 60, 331–341, 1994.
Iglesias, J. and Castillejo, J.: Field observations on feeding of the land snail Helix aspersa Müller, J. Mollus. Stud., 65, 411–423, 1999.
Keeling, R. F., Piper, S. C., Bollenbacher, A. F., and Walker, S. J.: Monthly atmospheric 13C/12C isotopic ratios for 11 SIO stations, in: Trends: A Compendium of Data on Global Change, Carbon Dioxide Information Analysis Center, Oak Ridge National Laboratory, US Department of Energy, Oak Ridge, Tenn., USA, 2010.
Kehrwald, N. M., McCoy, W. D., Thibeault, J., Burns, S. J., and Oches, E. A.: Paleoclimatic implications of the spatial patterns of modern and LGM European land-snail shell δ18O, Quaternary Res., 74, 166–176, 2010.
Kohno, M.: Rearing of SIEBOLD's globular snail Acusta despecta (SOWERBY) on a semi-synthetic diet, Jpn. J. Malacol., 35, 50–62, 1976 (in Japanese).
Lécolle, P.: The oxygen isotope composition of landsnail shells as a climatic indicator: applications to hydrogeology and paleoclimatology, Chem. Geol., 58, 157–181, 1985.
Lee, J.-S. and Kwon, O.-K.: Studies on the intraspecific variations on geological distributions of Acusta despecta sieboldiana in Korea, Korean J. Malacol., 12, 19–31, 1996 (in Korean).
Mason, C. F.: Food, feeding rates and assimilation in woodland snails, Oecologia, 4, 358–373, 1970.
McConnaughey, T. A. and Gillikin, D. P.: Carbon isotopes in mollusk shell carbonates, Geo.-Mar. Lett., 28, 287–299, 2008.
Metref, S., Rousseau, D. D., Bentaleb, I., Labonne, M., and Vianey-Liaud, M.: Study of the diet effect on δ13C of shell carbonate of the land snail Helix aspersa<\i> in experimental conditions, Earth Planet. Sci. Lett., 211, 381–393, 2003.
Mook, W. G., Bommerson, J. C., and Staverman, W. H.: Carbon isotope fractionation between dissolved bicarbonate and gaseous carbon dioxide, Earth Planet. Sci. Lett., 22, 169–176, 1974.
Okuma, R.: Mating season of two land snails, Bradybaena similaris and Acusta sieboldiana, Chiribotan, 13, 51–59, 1982 (in Japanese).
Pigati, J. S., Quade, J., Shahanan, T. M., and Haynes Jr., C. V.: Radiocarbon dating of minute gastropods and new constraints on the timing of late Quaternary spring-discharge deposits in southern Arizona, USA, Palaeogeogr. Palaeocl., 204, 33–45, 2004.
Pigati, J. S., Rech, J. A., and Nekola, J. C.: Radiocarbon dating of small terrestrial gastropod shells in North America, Quat. Geochronol., 5, 519–532, 2010.
Richardson, A. M. M.: Food, feeding rates and assimilation in the land snail Cepaea nemoralis L., Oecologia, 19, 59–70, 1975.
Romanek, C. S., Grossman, E. L., and Morse, J. W.: Carbon isotopic fractionation in synthetic aragonite and calcite: effects of temperature and precipitation rate, Geochim. Cosmochim. Acta, 56, 419–430, 1992.
Romaniello, L., Quarta, G., Mastronuzzi, G., D'Elia, M., and Calcagnile, L.: 14C age anomalies in modern land snails shell carbonate from Southern Italy, Quat. Geochronol., 3, 68–75, 2008.
Rubinson, M. and Clayton, R. N.: Carbon-13 fractionation between aragonite and calcite, Geochim. Cosmochim. Acta, 33, 997–1002, 1969.
Stott, L. D.: The influence of diet on the δ13C of shell carbon in the pulmonate snail Helix aspersa<\i>, Earth Planet. Sci. Lett., 195, 249–259, 2002.
Sumikawa, S.: The life cycle of Acusta despecta sieboldiana PFEIFFER observed in Northern Kyushu, Doubutsugaku Zasshi, 71, 365 pp., 1962 (in Japanese).
Suzuki, M. and Yamashita, Y.: On the food plants of Siebold's globular snail, Acusta despecta Gray (Gastropoda, Mollusca), Memoirs of the Institute of Sciences and Technology, Meiji University, 6, 211–227, 1967 (in Japanese).
Szaran, J.: Achievement of carbon isotope equilibrium in the system HCO3-(solution)-CO2 (gas), Chem. Geol., 142, 79–86, 1997.
Takahashi, K., Asakura, A. and Kurozumi, T.: Copulation frequency and mating system of the land snail Acusta despecta sieboldiana (Pfeiffer), Jpn. J. Malacol., 51, 323–326, 1992 (in Japanese).
Takamiya, H. and Meighan, C. W.: Faunal remains obtained from the Atta-baru Shell Midden, Bulletin of the Department of Sociology, Okinawa International University, 19, 195–207, 1992 (in Japanese).
Takeuchi, M. and Tamura, M.: Seasonal occurrence, daily activity and food utilization of three sympatric terrestrial Gastropods, House and Household Insect Pests, 17, 11–23, 1995 (in Japanese).
Wahl, E. H., Fidric, B., Rella, C. W., Koulikov, S., Kharlamov, B., Tan, S., Kachanov, A. A., Richman, B. A., Crosson, E. R., Paldus, B. A., Kalaskar, S., and Bowling, D. R.: Applications of cavity ring-down spectroscopy to high precision isotope ratio measurement of 13C/12C in carbon dioxide, Isot. Environ. Healt. S., 42, 21–35, 2006.
Yanes, Y., Delgado, A., Castillo, C., Alonso, M. R., Ibáñez, M., De-la-Nuez, J., and Kowalewski, M.: Stable isotope (δ18O, δ13C, and δD) signatures of recent terrestrial communities from a low-latitude, oceanic setting: endemic land snails, plants, rain, and carbonate sediments from the eastern Canary Islands, Chem. Geol., 249, 377–392, 2008a.
Yanes, Y., Tomašových, A., Kowalewski, M., Castillo, C., Aguirre, J., Alonso, M. R., and Ibáñez, M.: Taphonomy and compositional fidelity of Quaternary fossil assemblages of terrestrial gastropods from carbonate-rich environments of the Canary Islands, Lethaia., 41, 235–256, 2008b.
Yanes, Y., Romanek, C. S., Delgado, A., Brant, H. A., Noakes, J. E., Alonso, M. R., and Ibáñez, M.: Oxygen and carbon stable isotopes of modern land snail shells as environmental indicators from a low-latitude oceanic island, Geochim. Cosmochim. Acta, 73, 4077–4099, 2009.
Yanes, Y., Yapp, C. J., Ibáñez, M., Alonso, M. R., De-la-Nuez, J., Quesada, M. L., Castillo, C., and Delgado, A.: Pleistocene–Holocene environmental change in the Canary Archipelago as inferred from the stable isotope composition of land snail shells, Quaternary Res., 75, 658–669, 2011.
Yanes, Y., Gutiérrez-Zugasti, I., and Delgado, A.: Late-glacial to Holocene transition in northern Spain deduced from land-snail shelly accumulations, Quaternary Res., 78, 373–385, 2012.
Yanes, Y., García-Alix, A., Asta, M. P., Ibáñez, M., Alonso, M. R., and Delgado, A.: Late Pleistocene–Holocene environmental conditions in Lanzarote (Canary Islands) inferred from calcitic and aragonitic land snail shells and bird bones, Palaeogeogr. Palaeocl., 378, 91–102, 2013a.
Yanes, Y., Asta, M. P., Ibáñez, M., Alonso, M. R., and Romanek, C. S.: Paleoenvironmental implications of carbon stable isotope composition of land snail tissues, Quaternary Res., 80, 596–605, 2013b.
Yanes, Y., Riquelme, J. A., Cámara, J. A., and Delgado, A.: Stable isotope composition of middle to late Holocene land snail shells from the Marroquíes archeological site (Jaén, Southern Spain): Paleoenvironmental implications, Quatern. Int., 302, 77–87, 2013c.
Yapp, C. J.: Oxygen and carbon isotope measurements of land snail shell carbonate, Geochim. Cosmochim. Acta, 43, 629–635, 1979.
Zaarur, S., Olack, G., and Affek, H. P.: Paleo-environmental implication of clumped isotopes in land snail shells, Geochim. Cosmochim. Acta, 75, 6859–6869, 2011.
Zanchetta, G., Leone, G., Fallick, A. E., and Bonadonna, F. P.: Oxygen isotope composition of living land snail shells: Data from Italy, Palaeogeogr. Palaeocl., 223, 20–33, 2005.
Zhang, J., Quay, P. D., and Wilbur, D. O.: Carbon isotope fractionation during gas–water exchange and dissolution of CO2, Geochim. Cosmochim. Acta, 59, 107–114, 1995.
Altmetrics
Final-revised paper
Preprint