Articles | Volume 14, issue 18
https://doi.org/10.5194/bg-14-4229-2017
https://doi.org/10.5194/bg-14-4229-2017
Research article
 | 
21 Sep 2017
Research article |  | 21 Sep 2017

Biogeochemical cycling at the aquatic–terrestrial interface is linked to parafluvial hyporheic zone inundation history

Amy E. Goldman, Emily B. Graham, Alex R. Crump, David W. Kennedy, Elvira B. Romero, Carolyn G. Anderson, Karl L. Dana, Charles T. Resch, Jim K. Fredrickson, and James C. Stegen

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Cited articles

Alexander, M.: Introduction to soil microbiology, 2 Edn., John Wiley & Sons, 1977.
Anderson, J. P. E. and Domsch, K. H.: Quantification of bacterial and fungal contributions to soil respiration, Archiv für Mikrobiologie, 93, 113–127, https://doi.org/10.1007/bf00424942, 1973.
Apprill, A., McNally, S., Parsons, R., and Webe, L.: Minor revision to V4 region SSU rRNA 806R gene primer greatly increases detection of SAR11 bacterioplankton, Aquat. Microb. Ecol., 75, 129–137, https://doi.org/10.3354/ame01753 2015.
Arntzen, E. V., Geist, D. R., and Dresel, P. E.: Effects of fluctuating river flow on groundwater/surface water mixing in the hyporheic zone of a regulated, large cobble bed river, RRA, 22, 937–946, https://doi.org/10.1002/rra.947, 2006.
Baker, M. A., Dahm, C. N., and Valett, H. M.: Acetate retention and metabolism in the hyporheic zone of a mountain stream, Limnol. Oceanogr., 44, 1530–1539, https://doi.org/10.4319/lo.1999.44.6.1530, 1999.
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Short summary
The history of river inundation influences shoreline sediment biogeochemical cycling and microbial dynamics. Sediment exhibited a binary respiration response to rewetting, in which respiration from less recently saturated sediment was suppressed relative to more recently saturated sediment, likely due to inhibition of fungal metabolic activity. River shorelines should likely be integrated as a distinct environment into hydrobiogeochemical models to predict watershed biogeochemical function.
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