Articles | Volume 14, issue 2
https://doi.org/10.5194/bg-14-481-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-14-481-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
30 Jan 2017
Research article |
| 30 Jan 2017
Leaf nitrogen from first principles: field evidence for adaptive variation with climate
Department of Biological Sciences, Macquarie University, North Ryde,
NSW 2109, Australia
Terrestrial Ecosystem Research Network: Ecosystem Modelling and
Scaling Infrastructure, University of Sydney, NSW 2006, Australia
Faculty of Agriculture and Environment, Department of Environmental
Sciences, University of Sydney, NSW 2006, Australia
Iain Colin Prentice
Department of Biological Sciences, Macquarie University, North Ryde,
NSW 2109, Australia
AXA Chair of Biosphere and Climate Impacts, Department of Life
Sciences, Imperial College London, Silwood Park Campus, Buckhurst Road,
Ascot SL5 7PY, UK
Bradley J. Evans
Department of Biological Sciences, Macquarie University, North Ryde,
NSW 2109, Australia
Terrestrial Ecosystem Research Network: Ecosystem Modelling and
Scaling Infrastructure, University of Sydney, NSW 2006, Australia
Faculty of Agriculture and Environment, Department of Environmental
Sciences, University of Sydney, NSW 2006, Australia
Stefan Caddy-Retalic
Terrestrial Ecosystem Research Network: Australian Transect Network,
University of Adelaide, North Terrace, Adelaide, SA 5005, Australia
School of Biological Sciences and Environment Institute, University of
Adelaide, North Terrace, Adelaide, SA 5005, Australia
Andrew J. Lowe
Terrestrial Ecosystem Research Network: Australian Transect Network,
University of Adelaide, North Terrace, Adelaide, SA 5005, Australia
School of Biological Sciences and Environment Institute, University of
Adelaide, North Terrace, Adelaide, SA 5005, Australia
Science, Monitoring and Knowledge Branch, Department of Environment,
Water and Natural Resources, Hackney Road, Kent Town, SA 5005, Australia
Ian J. Wright
Department of Biological Sciences, Macquarie University, North Ryde,
NSW 2109, Australia
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Benjamin D. Stocker, Han Wang, Nicholas G. Smith, Sandy P. Harrison, Trevor F. Keenan, David Sandoval, Tyler Davis, and I. Colin Prentice
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Guangqi Li, Sandy P. Harrison, and I. Colin Prentice
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-63, https://doi.org/10.5194/bg-2019-63, 2019
Publication in BG not foreseen
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Dongyang Wei, Penélope González-Sampériz, Graciela Gil-Romera, Sandy P. Harrison, and I. Colin Prentice
Clim. Past Discuss., https://doi.org/10.5194/cp-2019-16, https://doi.org/10.5194/cp-2019-16, 2019
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Biogeosciences, 14, 4711–4732, https://doi.org/10.5194/bg-14-4711-2017, https://doi.org/10.5194/bg-14-4711-2017, 2017
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Biogeosciences, 14, 111–129, https://doi.org/10.5194/bg-14-111-2017, https://doi.org/10.5194/bg-14-111-2017, 2017
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Biogeosciences, 13, 5947–5964, https://doi.org/10.5194/bg-13-5947-2016, https://doi.org/10.5194/bg-13-5947-2016, 2016
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Jason Beringer, Lindsay B. Hutley, Ian McHugh, Stefan K. Arndt, David Campbell, Helen A. Cleugh, James Cleverly, Víctor Resco de Dios, Derek Eamus, Bradley Evans, Cacilia Ewenz, Peter Grace, Anne Griebel, Vanessa Haverd, Nina Hinko-Najera, Alfredo Huete, Peter Isaac, Kasturi Kanniah, Ray Leuning, Michael J. Liddell, Craig Macfarlane, Wayne Meyer, Caitlin Moore, Elise Pendall, Alison Phillips, Rebecca L. Phillips, Suzanne M. Prober, Natalia Restrepo-Coupe, Susanna Rutledge, Ivan Schroder, Richard Silberstein, Patricia Southall, Mei Sun Yee, Nigel J. Tapper, Eva van Gorsel, Camilla Vote, Jeff Walker, and Tim Wardlaw
Biogeosciences, 13, 5895–5916, https://doi.org/10.5194/bg-13-5895-2016, https://doi.org/10.5194/bg-13-5895-2016, 2016
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OzFlux is the regional Australian and New Zealand flux tower network that aims to provide a continental-scale national facility to monitor and assess trends, and improve predictions, of Australia’s terrestrial biosphere and climate. We describe the evolution, design, and status as well as an overview of data processing. We suggest that a synergistic approach is required to address all of the spatial, ecological, human, and cultural challenges of managing Australian ecosystems.
Caitlin E. Moore, Tim Brown, Trevor F. Keenan, Remko A. Duursma, Albert I. J. M. van Dijk, Jason Beringer, Darius Culvenor, Bradley Evans, Alfredo Huete, Lindsay B. Hutley, Stefan Maier, Natalia Restrepo-Coupe, Oliver Sonnentag, Alison Specht, Jeffrey R. Taylor, Eva van Gorsel, and Michael J. Liddell
Biogeosciences, 13, 5085–5102, https://doi.org/10.5194/bg-13-5085-2016, https://doi.org/10.5194/bg-13-5085-2016, 2016
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Australian vegetation phenology is highly variable due to the diversity of ecosystems on the continent. We explore continental-scale variability using satellite remote sensing by broadly classifying areas as seasonal, non-seasonal, or irregularly seasonal. We also examine ecosystem-scale phenology using phenocams and show that some broadly non-seasonal ecosystems do display phenological variability. Overall, phenocams are useful for understanding ecosystem-scale Australian vegetation phenology.
Corinne Le Quéré, Erik T. Buitenhuis, Róisín Moriarty, Séverine Alvain, Olivier Aumont, Laurent Bopp, Sophie Chollet, Clare Enright, Daniel J. Franklin, Richard J. Geider, Sandy P. Harrison, Andrew G. Hirst, Stuart Larsen, Louis Legendre, Trevor Platt, I. Colin Prentice, Richard B. Rivkin, Sévrine Sailley, Shubha Sathyendranath, Nick Stephens, Meike Vogt, and Sergio M. Vallina
Biogeosciences, 13, 4111–4133, https://doi.org/10.5194/bg-13-4111-2016, https://doi.org/10.5194/bg-13-4111-2016, 2016
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We present a global biogeochemical model which incorporates ecosystem dynamics based on the representation of ten plankton functional types, and use the model to assess the relative roles of iron vs. grazing in determining phytoplankton biomass in the Southern Ocean. Our results suggest that observed low phytoplankton biomass in the Southern Ocean during summer is primarily explained by the dynamics of the Southern Ocean zooplankton community, despite iron limitation of phytoplankton growth.
Stijn Hantson, Almut Arneth, Sandy P. Harrison, Douglas I. Kelley, I. Colin Prentice, Sam S. Rabin, Sally Archibald, Florent Mouillot, Steve R. Arnold, Paulo Artaxo, Dominique Bachelet, Philippe Ciais, Matthew Forrest, Pierre Friedlingstein, Thomas Hickler, Jed O. Kaplan, Silvia Kloster, Wolfgang Knorr, Gitta Lasslop, Fang Li, Stephane Mangeon, Joe R. Melton, Andrea Meyn, Stephen Sitch, Allan Spessa, Guido R. van der Werf, Apostolos Voulgarakis, and Chao Yue
Biogeosciences, 13, 3359–3375, https://doi.org/10.5194/bg-13-3359-2016, https://doi.org/10.5194/bg-13-3359-2016, 2016
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Our ability to predict the magnitude and geographic pattern of past and future fire impacts rests on our ability to model fire regimes. A large variety of models exist, and it is unclear which type of model or degree of complexity is required to model fire adequately at regional to global scales. In this paper we summarize the current state of the art in fire-regime modelling and model evaluation, and outline what lessons may be learned from the Fire Model Intercomparison Project – FireMIP.
Rhys Whitley, Jason Beringer, Lindsay B. Hutley, Gab Abramowitz, Martin G. De Kauwe, Remko Duursma, Bradley Evans, Vanessa Haverd, Longhui Li, Youngryel Ryu, Benjamin Smith, Ying-Ping Wang, Mathew Williams, and Qiang Yu
Biogeosciences, 13, 3245–3265, https://doi.org/10.5194/bg-13-3245-2016, https://doi.org/10.5194/bg-13-3245-2016, 2016
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In this study we assess how well terrestrial biosphere models perform at predicting water and carbon cycling for savanna ecosystems. We apply our models to five savanna sites in Northern Australia and highlight key causes for model failure. Our assessment of model performance uses a novel benchmarking system that scores a model’s predictive ability based on how well it is utilizing its driving information. On average, we found the models as a group display only moderate levels of performance.
Caitlin E. Moore, Jason Beringer, Bradley Evans, Lindsay B. Hutley, Ian McHugh, and Nigel J. Tapper
Biogeosciences, 13, 2387–2403, https://doi.org/10.5194/bg-13-2387-2016, https://doi.org/10.5194/bg-13-2387-2016, 2016
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Savannas cover 20 % of the global land surface and account for 25 % of global terrestrial carbon uptake. They support 20 % of the world’s human population and are one of the most important ecosystems on our planet. We evaluated the temporal partitioning of carbon between overstory and understory in Australian tropical savanna using eddy covariance. We found the understory contributed ~ 32 % to annual productivity, increasing to 40 % in the wet season, thus driving seasonality in carbon uptake.
A. V. Gallego-Sala, D. J. Charman, S. P. Harrison, G. Li, and I. C. Prentice
Clim. Past, 12, 129–136, https://doi.org/10.5194/cp-12-129-2016, https://doi.org/10.5194/cp-12-129-2016, 2016
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It has become a well-established paradigm that blanket bog landscapes in the British Isles are a result of forest clearance by early human populations. We provide a novel test of this hypothesis using results from bioclimatic modelling driven by cimate reconstructions compared with a database of peat initiation dates. Both results show similar patterns of peat initiation over time and space. This suggests that climate was the main driver of blanket bog inception and not human disturbance.
B. A. A. Hoogakker, R. S. Smith, J. S. Singarayer, R. Marchant, I. C. Prentice, J. R. M. Allen, R. S. Anderson, S. A. Bhagwat, H. Behling, O. Borisova, M. Bush, A. Correa-Metrio, A. de Vernal, J. M. Finch, B. Fréchette, S. Lozano-Garcia, W. D. Gosling, W. Granoszewski, E. C. Grimm, E. Grüger, J. Hanselman, S. P. Harrison, T. R. Hill, B. Huntley, G. Jiménez-Moreno, P. Kershaw, M.-P. Ledru, D. Magri, M. McKenzie, U. Müller, T. Nakagawa, E. Novenko, D. Penny, L. Sadori, L. Scott, J. Stevenson, P. J. Valdes, M. Vandergoes, A. Velichko, C. Whitlock, and C. Tzedakis
Clim. Past, 12, 51–73, https://doi.org/10.5194/cp-12-51-2016, https://doi.org/10.5194/cp-12-51-2016, 2016
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In this paper we use two climate models to test how Earth’s vegetation responded to changes in climate over the last 120 000 years, looking at warm interglacial climates like today, cold ice-age glacial climates, and intermediate climates. The models agree well with observations from pollen, showing smaller forested areas and larger desert areas during cold periods. Forests store most terrestrial carbon; the terrestrial carbon lost during cold climates was most likely relocated to the oceans.
M. G. De Kauwe, S.-X. Zhou, B. E. Medlyn, A. J. Pitman, Y.-P. Wang, R. A. Duursma, and I. C. Prentice
Biogeosciences, 12, 7503–7518, https://doi.org/10.5194/bg-12-7503-2015, https://doi.org/10.5194/bg-12-7503-2015, 2015
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Future climate change has the potential to increase drought in many regions of the globe. Recent data syntheses show that drought sensitivity varies considerably among plants from different climate zones, but state-of-the-art models currently assume the same drought sensitivity for all vegetation. Our results indicate that models will over-estimate drought impacts in drier climates unless different sensitivity of vegetation to drought is taken into account.
T.-T. Meng, H. Wang, S. P. Harrison, I. C. Prentice, J. Ni, and G. Wang
Biogeosciences, 12, 5339–5352, https://doi.org/10.5194/bg-12-5339-2015, https://doi.org/10.5194/bg-12-5339-2015, 2015
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By analysing the quantitative leaf-traits along extensive temperature and moisture gradients with generalized linear models, we found that metabolism-related traits are universally acclimated to environmental conditions, rather than being fixed within plant functional types. The results strongly support a move towards Dynamic Global Vegetation Models in which continuous, adaptive trait variation provides the fundamental mechanism for changes in ecosystem properties along environmental gradients.
I. C. Prentice, X. Liang, B. E. Medlyn, and Y.-P. Wang
Atmos. Chem. Phys., 15, 5987–6005, https://doi.org/10.5194/acp-15-5987-2015, https://doi.org/10.5194/acp-15-5987-2015, 2015
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Land surface models (LSMs) describe how carbon and water fluxes react to environmental change. They are key component of climate models, yet they differ enormously. Many perform poorly, despite having many parameters. We outline a development strategy emphasizing robustness, reliability and realism, none of which is guaranteed by complexity alone. We propose multiple constraints, benchmarking and data assimilation, and representing unresolved processes stochastically, as tools in this endeavour.
G. Li, S. P. Harrison, and I. C. Prentice
Biogeosciences Discuss., https://doi.org/10.5194/bgd-12-4769-2015, https://doi.org/10.5194/bgd-12-4769-2015, 2015
Revised manuscript has not been submitted
G. Li, S. P. Harrison, I. C. Prentice, and D. Falster
Biogeosciences, 11, 6711–6724, https://doi.org/10.5194/bg-11-6711-2014, https://doi.org/10.5194/bg-11-6711-2014, 2014
M. Martin Calvo, I. C. Prentice, and S. P. Harrison
Biogeosciences, 11, 6017–6027, https://doi.org/10.5194/bg-11-6017-2014, https://doi.org/10.5194/bg-11-6017-2014, 2014
H. Wang, I. C. Prentice, and T. W. Davis
Biogeosciences, 11, 5987–6001, https://doi.org/10.5194/bg-11-5987-2014, https://doi.org/10.5194/bg-11-5987-2014, 2014
D. I. Kelley, S. P. Harrison, and I. C. Prentice
Geosci. Model Dev., 7, 2411–2433, https://doi.org/10.5194/gmd-7-2411-2014, https://doi.org/10.5194/gmd-7-2411-2014, 2014
I. Bistinas, S. P. Harrison, I. C. Prentice, and J. M. C. Pereira
Biogeosciences, 11, 5087–5101, https://doi.org/10.5194/bg-11-5087-2014, https://doi.org/10.5194/bg-11-5087-2014, 2014
P. N. Foster, I. C. Prentice, C. Morfopoulos, M. Siddall, and M. van Weele
Biogeosciences, 11, 3437–3451, https://doi.org/10.5194/bg-11-3437-2014, https://doi.org/10.5194/bg-11-3437-2014, 2014
A. M. Foley, D. Dalmonech, A. D. Friend, F. Aires, A. T. Archibald, P. Bartlein, L. Bopp, J. Chappellaz, P. Cox, N. R. Edwards, G. Feulner, P. Friedlingstein, S. P. Harrison, P. O. Hopcroft, C. D. Jones, J. Kolassa, J. G. Levine, I. C. Prentice, J. Pyle, N. Vázquez Riveiros, E. W. Wolff, and S. Zaehle
Biogeosciences, 10, 8305–8328, https://doi.org/10.5194/bg-10-8305-2013, https://doi.org/10.5194/bg-10-8305-2013, 2013
A. M. Ukkola and I. C. Prentice
Hydrol. Earth Syst. Sci., 17, 4177–4187, https://doi.org/10.5194/hess-17-4177-2013, https://doi.org/10.5194/hess-17-4177-2013, 2013
H. Wang, I. C. Prentice, and J. Ni
Biogeosciences, 10, 5817–5830, https://doi.org/10.5194/bg-10-5817-2013, https://doi.org/10.5194/bg-10-5817-2013, 2013
D. I. Kelley, I. C. Prentice, S. P. Harrison, H. Wang, M. Simard, J. B. Fisher, and K. O. Willis
Biogeosciences, 10, 3313–3340, https://doi.org/10.5194/bg-10-3313-2013, https://doi.org/10.5194/bg-10-3313-2013, 2013
F. J. Bragg, I. C. Prentice, S. P. Harrison, G. Eglinton, P. N. Foster, F. Rommerskirchen, and J. Rullkötter
Biogeosciences, 10, 2001–2010, https://doi.org/10.5194/bg-10-2001-2013, https://doi.org/10.5194/bg-10-2001-2013, 2013
D. J. Charman, D. W. Beilman, M. Blaauw, R. K. Booth, S. Brewer, F. M. Chambers, J. A. Christen, A. Gallego-Sala, S. P. Harrison, P. D. M. Hughes, S. T. Jackson, A. Korhola, D. Mauquoy, F. J. G. Mitchell, I. C. Prentice, M. van der Linden, F. De Vleeschouwer, Z. C. Yu, J. Alm, I. E. Bauer, Y. M. C. Corish, M. Garneau, V. Hohl, Y. Huang, E. Karofeld, G. Le Roux, J. Loisel, R. Moschen, J. E. Nichols, T. M. Nieminen, G. M. MacDonald, N. R. Phadtare, N. Rausch, Ü. Sillasoo, G. T. Swindles, E.-S. Tuittila, L. Ukonmaanaho, M. Väliranta, S. van Bellen, B. van Geel, D. H. Vitt, and Y. Zhao
Biogeosciences, 10, 929–944, https://doi.org/10.5194/bg-10-929-2013, https://doi.org/10.5194/bg-10-929-2013, 2013
Related subject area
Biogeochemistry: Stable Isotopes & Other Tracers
Fungi present distinguishable isotopic signals in their lipids when grown on glycolytic versus tricarboxylic acid cycle intermediates
Sea ice and mixed layer depth influence on nitrate depletion and associated isotopic effects in the Drake Passage–Weddell Sea region, Southern Ocean
Hydrodynamic and Primary Production Effects on Seasonal DO Variability in the Danube River
Stable iron isotope signals indicate a “pseudo-abiotic” process driving deep iron release in methanic sediments
Triple oxygen isotope evidence for the pathway of nitrous oxide production in a forested soil with increased emission on rainy days
Variability in oxygen isotopic fractionation of enzymatic O2 consumption
Previous integrated or organic farming affects productivity and ecosystem N balance rather than fertilizer 15N allocation to plants and soil, leaching, or gaseous emissions (NH3, N2O, and N2)
How long does carbon stay in a near-pristine central Amazon forest? An empirical estimate with radiocarbon
No increase is detected and modeled for the seasonal cycle amplitude of δ13C of atmospheric carbon dioxide
Bias in calculating gross nitrification rates in forested catchments using the triple oxygen isotopic composition (Δ17O) of stream nitrate
Position-specific kinetic isotope effects for nitrous oxide: a new expansion of the Rayleigh model
Technical note: A Bayesian mixing model to unravel isotopic data and quantify trace gas production and consumption pathways for time series data – Time-resolved FRactionation And Mixing Evaluation (TimeFRAME)
Separating above-canopy CO2 and O2 measurements into their atmospheric and biospheric signatures
Climatic controls on leaf wax hydrogen isotope ratios in terrestrial and marine sediments along a hyperarid-to-humid gradient
Fractionation of stable carbon isotopes during microbial propionate consumption in anoxic rice paddy soils
Sources and sinks of carbonyl sulfide inferred from tower and mobile atmospheric observations in the Netherlands
Downpour dynamics: outsized impacts of storm events on unprocessed atmospheric nitrate export in an urban watershed
The hidden role of dissolved organic carbon in the biogeochemical cycle of carbon in modern redox-stratified lakes
Biogeochemical processes captured by carbon isotopes in redox-stratified water columns: a comparative study of four modern stratified lakes along an alkalinity gradient
Partitioning of carbon export in the euphotic zone of the oligotrophic South China Sea
Determination of respiration and photosynthesis fractionation factors for atmospheric dioxygen inferred from a vegetation–soil–atmosphere analogue of the terrestrial biosphere in closed chambers
Permafrost degradation and nitrogen cycling in Arctic rivers: insights from stable nitrogen isotope studies
Neodymium budget in the Mediterranean Sea: evaluating the role of atmospheric dusts using a high-resolution dynamical-biogeochemical model
Nitrate isotope investigations reveal future impacts of climate change on nitrogen inputs and cycling in Arctic fjords: Kongsfjorden and Rijpfjorden (Svalbard)
Mineralization of autochthonous particulate organic carbon is a fast channel of organic matter turnover in Germany's largest drinking water reservoir
Carbon isotopic ratios of modern C3 and C4 vegetation on the Indian peninsula and changes along the plant–soil–river continuum – implications for vegetation reconstructions
Controls on nitrite oxidation in the upper Southern Ocean: insights from winter kinetics experiments in the Indian sector
Tracing the source of nitrate in a forested stream showing elevated concentrations during storm events
Intra-skeletal variability in phosphate oxygen isotope composition reveals regional heterothermies in marine vertebrates
Isotopic differences in soil–plant–atmosphere continuum composition and control factors of different vegetation zones on the northern slope of the Qilian Mountains
An analysis of the variability in δ13C in macroalgae from the Gulf of California: indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation
Summertime productivity and carbon export potential in the Weddell Sea, with a focus on the waters adjacent to Larsen C Ice Shelf
Particulate biogenic barium tracer of mesopelagic carbon remineralization in the Mediterranean Sea (PEACETIME project)
Hydrogen and carbon isotope fractionation factors of aerobic methane oxidation in deep-sea water
Host-influenced geochemical signature in the parasitic foraminifera Hyrrokkin sarcophaga
Comparing modified substrate-induced respiration with selective inhibition (SIRIN) and N2O isotope approaches to estimate fungal contribution to denitrification in three arable soils under anoxic conditions
How are oxygen budgets influenced by dissolved iron and growth of oxygenic phototrophs in an iron-rich spring system? Initial results from the Espan Spring in Fürth, Germany
Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin
High-resolution 14C bomb peak dating and climate response analyses of subseasonal stable isotope signals in wood of the African baobab – a case study from Oman
Geographic variability in freshwater methane hydrogen isotope ratios and its implications for global isotopic source signatures
Seasonality of nitrogen sources, cycling, and loading in a New England river discerned from nitrate isotope ratios
Evaluating the response of δ13C in Haloxylon ammodendron, a dominant C4 species in Asian desert ecosystems, to water and nitrogen addition as well as the availability of its δ13C as an indicator of water use efficiency
Modern silicon dynamics of a small high-latitude subarctic lake
Radium-228-derived ocean mixing and trace element inputs in the South Atlantic
Nitrogen isotopic fractionations during nitric oxide production in an agricultural soil
Silicon uptake and isotope fractionation dynamics by crop species
Barium stable isotopes as a fingerprint of biological cycling in the Amazon River basin
Bottomland hardwood forest growth and stress response to hydroclimatic variation: evidence from dendrochronology and tree ring Δ13C values
N2O isotope approaches for source partitioning of N2O production and estimation of N2O reduction – validation with the 15N gas-flux method in laboratory and field studies
Technical note: Single-shell δ11B analysis of Cibicidoides wuellerstorfi using femtosecond laser ablation MC-ICPMS and secondary ion mass spectrometry
Stanislav Jabinski, Vítězslav Kučera, Marek Kopáček, Jan Jansa, and Travis B. Meador
Biogeosciences, 22, 3127–3141, https://doi.org/10.5194/bg-22-3127-2025, https://doi.org/10.5194/bg-22-3127-2025, 2025
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Microbial production is a key parameter in estimation of organic matter cycling in environmental systems, and fungi play a major role as decomposers. In order to improve investigation of fungal production and turnover times in environmental studies, we determined the isotopic signals encoded into lipid biomarkers of fungal pure cultures growing on various carbon substrates in media with isotopically labeled water and bicarbonate.
Aymeric P. M. Servettaz, Yuta Isaji, Chisato Yoshikawa, Yanghee Jang, Boo-Keun Khim, Yeongjun Ryu, Daniel M. Sigman, Nanako O. Ogawa, Francisco J. Jiménez-Espejo, and Naohiko Ohkouchi
Biogeosciences, 22, 2239–2260, https://doi.org/10.5194/bg-22-2239-2025, https://doi.org/10.5194/bg-22-2239-2025, 2025
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Phytoplankton blooms occur after sea ice retreats in the Southern Ocean. In this study we investigate the influence of seasonal cycle of sea ice concentration on nitrate depletion, testing the hypothesis that meltwater release stabilizes the water column and favors nutrient utilization. We find that, at a regional scale, nitrate depletion and vertical mixing are weakly correlated with sea ice cycle. Nitrate depletion is rather linked to other oceanographic processes controlling mixing depth.
Jan Maier, Anna-Neva Visser, Christina Martina Schubert, Simon Thomas Wander, and Johannes Arthur Barth
EGUsphere, https://doi.org/10.5194/egusphere-2025-1580, https://doi.org/10.5194/egusphere-2025-1580, 2025
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We present the first large-scale assessment of the dissolved oxygen (DO) budget and δ18ODO across the Danube to distinguish DO sources and sinks, key for biogeochemical cycles. Two highly productive areas in the warm season showed large deviations (+12.1 ‰) from atmospheric equilibrium (+24.6 ‰ ± 0.4 ‰), unusual for large rivers. Critically low DO in the Sava (0.16 mmol/L) and lower Danube (0.2 mmol/L) in late summer resulted from intensified respiration.
Susann Henkel, Bo Liu, Michael Staubwasser, Simone A. Kasemann, Anette Meixner, David A. Aromokeye, Michael W. Friedrich, and Sabine Kasten
Biogeosciences, 22, 1673–1696, https://doi.org/10.5194/bg-22-1673-2025, https://doi.org/10.5194/bg-22-1673-2025, 2025
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We intend to unravel iron (Fe) reduction pathways in high-deposition methanic sediments because pools of Fe minerals could stimulate methane oxidation and also generation. Our data from the North Sea show that Fe release takes place mechanistically differently to Fe reduction in shallow sediments, which typically fractionates Fe isotopes. We conclude that fermentation of organic matter involving interspecies electron transfer, partly through conductive Fe oxides, could play an important role.
Weitian Ding, Urumu Tsunogai, Tianzheng Huang, Takashi Sambuichi, Wenhua Ruan, Masanori Ito, Hao Xu, Yongwon Kim, and Fumiko Nakagawa
EGUsphere, https://doi.org/10.21203/rs.3.rs-4264720/v2, https://doi.org/10.21203/rs.3.rs-4264720/v2, 2025
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Identifying the pathways of N2O produced through nitrification and denitrification in soil is crucial for effective mitigation. Thus, we monitored a new natural isotopic signature (Δ17O) of N2O in forested soil for identifying the pathways, which is almost stable during various biogeochemical processes. Our results suggest Δ17O is a promising signature for identifying pathways of N2O production, revealing that increased denitrification drives the high emission of N2O in soil on rainy days.
Carolina F.M. de Carvalho, Moritz F. Lehmann, and Sarah G. Pati
EGUsphere, https://doi.org/10.5194/egusphere-2025-1193, https://doi.org/10.5194/egusphere-2025-1193, 2025
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Using O2 stable isotope analysis, we determined the isotopic fractionation of biological O2 consumption by 10 flavin-dependent and 6 metalloenzymes. Metalloenzymes displayed a narrower range and lower values of isotopic fractionation than flavin-dependent enzymes. This work expands our understanding of the variability of oxygen isotopic fractionation at the enzyme level, improving the ability to study O2 dynamics from molecular to ecosystem scales.
Fawad Khan, Samuel Franco Luesma, Frederik Hartmann, Michael Dannenmann, Rainer Gasche, Clemens Scheer, Andreas Gattinger, Wiebke Niether, Elizabeth Gachibu Wangari, Ricky Mwangada Mwanake, Ralf Kiese, and Benjamin Wolf
EGUsphere, https://doi.org/10.5194/egusphere-2025-292, https://doi.org/10.5194/egusphere-2025-292, 2025
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Crop rotations with legumes and use of organic and mineral fertilizers show potential to reduce agricultural N losses. This study examined N losses, including direct N2 flux, on two adjacent sites with different management history: organic farming (OF) with legume cultivation and integrated farming (IF) using synthetic and organic N inputs. IF increased soil organic carbon and nitrogen content, 15N recovery and showed a balanced N budget, i.e., more efficient N cycling compared to OF.
Ingrid Chanca, Ingeborg Levin, Susan Trumbore, Kita Macario, Jost Lavric, Carlos Alberto Quesada, Alessandro Carioca de Araújo, Cléo Quaresma Dias Júnior, Hella van Asperen, Samuel Hammer, and Carlos A. Sierra
Biogeosciences, 22, 455–472, https://doi.org/10.5194/bg-22-455-2025, https://doi.org/10.5194/bg-22-455-2025, 2025
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Assessing the net carbon (C) budget of the Amazon entails considering the magnitude and timing of C absorption and losses through respiration (transit time of C). Radiocarbon-based estimates of the transit time of C in the Amazon Tall Tower Observatory (ATTO) suggest a change in the transit time from 6 ± 2 years and 18 ± 4 years within 2 years (October 2019 and December 2021, respectively). This variability indicates that only a fraction of newly fixed C can be stored for decades or longer.
Fortunat Joos, Sebastian Lienert, and Sönke Zaehle
Biogeosciences, 22, 19–39, https://doi.org/10.5194/bg-22-19-2025, https://doi.org/10.5194/bg-22-19-2025, 2025
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How plants regulate their exchange of CO2 and water with the atmosphere under global warming is critical for their carbon uptake and their cooling influence. We analyze the isotope ratio of atmospheric CO2 and detect no significant decadal trends in the seasonal cycle amplitude. The data are consistent with the regulation towards leaf CO2 and intrinsic water use efficiency growing proportionally to atmospheric CO2, in contrast to recent suggestions of downregulation of CO2 and water fluxes.
Weitian Ding, Urumu Tsunogai, and Fumiko Nakagawa
Biogeosciences, 21, 4717–4722, https://doi.org/10.5194/bg-21-4717-2024, https://doi.org/10.5194/bg-21-4717-2024, 2024
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Past studies have used the Δ17O of stream nitrate to estimate the gross nitrification rates (GNRs) in each forested catchment by approximating the Δ17O value of soil nitrate to be equal to that of stream nitrate. Based on inference and calculation of measured data, we found that this approximation resulted in an overestimated GNR. Therefore, it is essential to clarify and verify the Δ17O NO3− values in forested soils and streams before applying the Δ17O values of stream NO3− to GNR estimation.
Elise D. Rivett, Wenjuan Ma, Nathaniel E. Ostrom, and Eric L. Hegg
Biogeosciences, 21, 4549–4567, https://doi.org/10.5194/bg-21-4549-2024, https://doi.org/10.5194/bg-21-4549-2024, 2024
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Many different processes produce nitrous oxide (N2O), a potent greenhouse gas. Measuring the ratio of heavy and light nitrogen isotopes (15N/14N) for the non-exchangeable central and outer N atoms of N2O helps to distinguish sources of N2O. To accurately calculate the position-specific isotopic preference, we developed an expansion of the widely used Rayleigh model. Application of our new model to simulated and experimental data demonstrates its improved accuracy for analyzing N2O synthesis.
Eliza Harris, Philipp Fischer, Maciej P. Lewicki, Dominika Lewicka-Szczebak, Stephen J. Harris, and Fernando Perez-Cruz
Biogeosciences, 21, 3641–3663, https://doi.org/10.5194/bg-21-3641-2024, https://doi.org/10.5194/bg-21-3641-2024, 2024
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Greenhouse gases are produced and consumed via a number of pathways. Quantifying these pathways helps reduce the climate and environmental footprint of anthropogenic activities. The contribution of the pathways can be estimated from the isotopic composition, which acts as a fingerprint for these pathways. We have developed the Time-resolved FRactionation And Mixing Evaluation (TimeFRAME) model to simplify interpretation and estimate the contribution of different pathways and their uncertainty.
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
Biogeosciences, 21, 3015–3039, https://doi.org/10.5194/bg-21-3015-2024, https://doi.org/10.5194/bg-21-3015-2024, 2024
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The ratio between atmospheric O2 and CO2 can be used to characterize the carbon balance at the surface. By combining a model and observations from the Hyytiälä forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange because large-scale processes such as entrainment confound this signal. We therefore recommend always using multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Nestor Gaviria-Lugo, Charlotte Läuchli, Hella Wittmann, Anne Bernhardt, Patrick Frings, Mahyar Mohtadi, Oliver Rach, and Dirk Sachse
Biogeosciences, 20, 4433–4453, https://doi.org/10.5194/bg-20-4433-2023, https://doi.org/10.5194/bg-20-4433-2023, 2023
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We analyzed how leaf wax hydrogen isotopes in continental and marine sediments respond to climate along one of the strongest aridity gradients in the world, from hyperarid to humid, along Chile. We found that under extreme aridity, the relationship between hydrogen isotopes in waxes and climate is non-linear, suggesting that we should be careful when reconstructing past hydrological changes using leaf wax hydrogen isotopes so as to avoid overestimating how much the climate has changed.
Ralf Conrad and Peter Claus
Biogeosciences, 20, 3625–3635, https://doi.org/10.5194/bg-20-3625-2023, https://doi.org/10.5194/bg-20-3625-2023, 2023
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Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Propionate is an important intermediate. In the presence of sulfate, it was degraded by Syntrophobacter species via acetate to CO2. In the absence of sulfate, it was mainly consumed by Smithella and methanogenic archaeal species via butyrate and acetate to CH4. However, stable carbon isotope fractionation during the degradation process was quite small.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
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Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Joel T. Bostic, David M. Nelson, and Keith N. Eshleman
Biogeosciences, 20, 2485–2498, https://doi.org/10.5194/bg-20-2485-2023, https://doi.org/10.5194/bg-20-2485-2023, 2023
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Land-use changes can affect water quality. We used tracers of pollution sources and water flow paths to show that an urban watershed exports variable sources during storm events relative to a less developed watershed. Our results imply that changing precipitation patterns combined with increasing urbanization may alter sources of pollution in the future.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2405–2424, https://doi.org/10.5194/bg-20-2405-2023, https://doi.org/10.5194/bg-20-2405-2023, 2023
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Dissolved organic carbon (DOC) is a reservoir of prime importance in the C cycle of both continental and marine systems. It has also been suggested to influence the past Earth climate but is still poorly characterized in ancient-Earth-like environments. In this paper we show how DOC analyses from modern redox-stratified lakes can evidence specific metabolic reactions and environmental factors and how these can help us to interpret the C cycle of specific periods in the Earth's past.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2347–2367, https://doi.org/10.5194/bg-20-2347-2023, https://doi.org/10.5194/bg-20-2347-2023, 2023
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We describe the C cycle of four modern stratified water bodies from Mexico, a necessary step to better understand the C cycle of primitive-Earth-like environments, which were dominated by these kinds of conditions. We highlight the importance of local external factors on the C cycle of these systems. Notably, they influence the sensitivity of the carbonate record to environmental changes. We also show the strong C-cycle variability among these lakes and their organic C sediment record.
Yifan Ma, Kuanbo Zhou, Weifang Chen, Junhui Chen, Jin-Yu Terence Yang, and Minhan Dai
Biogeosciences, 20, 2013–2030, https://doi.org/10.5194/bg-20-2013-2023, https://doi.org/10.5194/bg-20-2013-2023, 2023
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We distinguished particulate organic carbon (POC) export fluxes out of the nutrient-depleted layer (NDL) and the euphotic zone. The amount of POC export flux at the NDL base suggests that the NDL could be a hotspot of particle export. The substantial POC export flux at the NDL base challenges traditional concepts that the NDL was limited in terms of POC export. The dominant nutrient source for POC export fluxes should be subsurface nutrients, which was determined by 15N isotopic mass balance.
Clémence Paul, Clément Piel, Joana Sauze, Nicolas Pasquier, Frédéric Prié, Sébastien Devidal, Roxanne Jacob, Arnaud Dapoigny, Olivier Jossoud, Alexandru Milcu, and Amaëlle Landais
Biogeosciences, 20, 1047–1062, https://doi.org/10.5194/bg-20-1047-2023, https://doi.org/10.5194/bg-20-1047-2023, 2023
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To improve the interpretation of the δ18Oatm and Δ17O of O2 in air bubbles in ice cores, we need to better quantify the oxygen fractionation coefficients associated with biological processes. We performed a simplified analogue of the terrestrial biosphere in a closed chamber. We found a respiration fractionation in agreement with the previous estimates at the microorganism scale, and a terrestrial photosynthetic fractionation was found. This has an impact on the estimation of the Dole effect.
Adam Francis, Raja S. Ganeshram, Robyn E. Tuerena, Robert G. M. Spencer, Robert M. Holmes, Jennifer A. Rogers, and Claire Mahaffey
Biogeosciences, 20, 365–382, https://doi.org/10.5194/bg-20-365-2023, https://doi.org/10.5194/bg-20-365-2023, 2023
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Climate change is causing extensive permafrost degradation and nutrient releases into rivers with great ecological impacts on the Arctic Ocean. We focused on nitrogen (N) release from this degradation and associated cycling using N isotopes, an understudied area. Many N species are released at degradation sites with exchanges between species. N inputs from permafrost degradation and seasonal river N trends were identified using isotopes, helping to predict climate change impacts.
Mohamed Ayache, Jean-Claude Dutay, Kazuyo Tachikawa, Thomas Arsouze, and Catherine Jeandel
Biogeosciences, 20, 205–227, https://doi.org/10.5194/bg-20-205-2023, https://doi.org/10.5194/bg-20-205-2023, 2023
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The neodymium (Nd) is one of the most useful tracers to fingerprint water mass provenance. However, the use of Nd is hampered by the lack of adequate quantification of the external sources. Here, we present the first simulation of dissolved Nd concentration and Nd isotopic composition in the Mediterranean Sea using a high-resolution model. We aim to better understand how the various external sources affect the Nd cycle and particularly assess how it is impacted by atmospheric inputs.
Marta Santos-Garcia, Raja S. Ganeshram, Robyn E. Tuerena, Margot C. F. Debyser, Katrine Husum, Philipp Assmy, and Haakon Hop
Biogeosciences, 19, 5973–6002, https://doi.org/10.5194/bg-19-5973-2022, https://doi.org/10.5194/bg-19-5973-2022, 2022
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Terrestrial sources of nitrate are important contributors to the nutrient pool in the fjords of Kongsfjorden and Rijpfjorden in Svalbard during the summer, and they sustain most of the fjord primary productivity. Ongoing tidewater glacier retreat is postulated to favour light limitation and less dynamic circulation in fjords. This is suggested to encourage the export of nutrients to the middle and outer part of the fjord system, which may enhance primary production within and in offshore areas.
Marlene Dordoni, Michael Seewald, Karsten Rinke, Kurt Friese, Robert van Geldern, Jakob Schmidmeier, and Johannes A. C. Barth
Biogeosciences, 19, 5343–5355, https://doi.org/10.5194/bg-19-5343-2022, https://doi.org/10.5194/bg-19-5343-2022, 2022
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Organic matter (OM) turnover into dissolved inorganic carbon (DIC) was investigated by means of carbon isotope mass balances in Germany's largest water reservoir. This includes a metalimnetic oxygen minimum (MOM). Autochthonous particulate organic carbon (POC) was the main contributor to DIC, with rates that were highest for the MOM. Generally low turnover rates outline the environmental fragility of this water body in the case that OM loads increase due to storm events or land use changes.
Frédérique M. S. A. Kirkels, Hugo J. de Boer, Paulina Concha Hernández, Chris R. T. Martes, Marcel T. J. van der Meer, Sayak Basu, Muhammed O. Usman, and Francien Peterse
Biogeosciences, 19, 4107–4127, https://doi.org/10.5194/bg-19-4107-2022, https://doi.org/10.5194/bg-19-4107-2022, 2022
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The distinct carbon isotopic values of C3 and C4 plants are widely used to reconstruct past hydroclimate, where more C3 plants reflect wetter and C4 plants drier conditions. Here we examine the impact of regional hydroclimatic conditions on plant isotopic values in the Godavari River basin, India. We find that it is crucial to identify regional plant isotopic values and consider drought stress, which introduces a bias in C3 / C4 plant estimates and associated hydroclimate reconstructions.
Mhlangabezi Mdutyana, Tanya Marshall, Xin Sun, Jessica M. Burger, Sandy J. Thomalla, Bess B. Ward, and Sarah E. Fawcett
Biogeosciences, 19, 3425–3444, https://doi.org/10.5194/bg-19-3425-2022, https://doi.org/10.5194/bg-19-3425-2022, 2022
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Nitrite-oxidizing bacteria in the winter Southern Ocean show a high affinity for nitrite but require a minimum (i.e., "threshold") concentration before they increase their rates of nitrite oxidation significantly. The classic Michaelis–Menten model thus cannot be used to derive the kinetic parameters, so a modified equation was employed that also yields the threshold nitrite concentration. Dissolved iron availability may play an important role in limiting nitrite oxidation.
Weitian Ding, Urumu Tsunogai, Fumiko Nakagawa, Takashi Sambuichi, Hiroyuki Sase, Masayuki Morohashi, and Hiroki Yotsuyanagi
Biogeosciences, 19, 3247–3261, https://doi.org/10.5194/bg-19-3247-2022, https://doi.org/10.5194/bg-19-3247-2022, 2022
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Excessive leaching of nitrate from forested catchments during storm events degrades water quality and causes eutrophication in downstream areas. Thus, tracing the source of nitrate increase during storm events in forested streams is important for sustainable forest management. Based on the isotopic compositions of stream nitrate, including Δ17O, this study clarifies that the source of stream nitrate increase during storm events was soil nitrate in the riparian zone.
Nicolas Séon, Romain Amiot, Guillaume Suan, Christophe Lécuyer, François Fourel, Fabien Demaret, Arnauld Vinçon-Laugier, Sylvain Charbonnier, and Peggy Vincent
Biogeosciences, 19, 2671–2681, https://doi.org/10.5194/bg-19-2671-2022, https://doi.org/10.5194/bg-19-2671-2022, 2022
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We analysed the oxygen isotope composition of bones and teeth of four marine species possessing regional heterothermies. We observed a consistent link between oxygen isotope composition and temperature heterogeneities recorded by classical methods. This opens up new perspectives on the determination of the thermoregulatory strategies of extant marine vertebrates where conventional methods are difficult to apply, but also allows us to investigate thermophysiologies of extinct vertebrates.
Yuwei Liu, Guofeng Zhu, Zhuanxia Zhang, Zhigang Sun, Leilei Yong, Liyuan Sang, Lei Wang, and Kailiang Zhao
Biogeosciences, 19, 877–889, https://doi.org/10.5194/bg-19-877-2022, https://doi.org/10.5194/bg-19-877-2022, 2022
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We took the water cycle process of soil–plant–atmospheric precipitation as the research objective. In the water cycle of soil–plant–atmospheric precipitation, precipitation plays the main controlling role. The main source of replenishment for alpine meadow plants is precipitation and alpine meltwater; the main source of replenishment for forest plants is soil water; and the plants in the arid foothills mainly use groundwater.
Roberto Velázquez-Ochoa, María Julia Ochoa-Izaguirre, and Martín Federico Soto-Jiménez
Biogeosciences, 19, 1–27, https://doi.org/10.5194/bg-19-1-2022, https://doi.org/10.5194/bg-19-1-2022, 2022
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Our research is the first approximation to understand the δ13C macroalgal variability in one of the most diverse marine ecosystems in the world, the Gulf of California. The life-form is the principal cause of δ13C macroalgal variability, mainly taxonomy. However, changes in habitat characteristics and environmental conditions also influence the δ13C macroalgal variability. The δ13C macroalgae is indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation.
Raquel F. Flynn, Thomas G. Bornman, Jessica M. Burger, Shantelle Smith, Kurt A. M. Spence, and Sarah E. Fawcett
Biogeosciences, 18, 6031–6059, https://doi.org/10.5194/bg-18-6031-2021, https://doi.org/10.5194/bg-18-6031-2021, 2021
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Biological activity in the shallow Weddell Sea affects the biogeochemistry of recently formed deep waters. To investigate the drivers of carbon and nutrient export, we measured rates of primary production and nitrogen uptake, characterized the phytoplankton community, and estimated nutrient depletion ratios across the under-sampled western Weddell Sea in mid-summer. Carbon export was highest at the ice shelves and was determined by a combination of physical, chemical, and biological factors.
Stéphanie H. M. Jacquet, Christian Tamburini, Marc Garel, Aurélie Dufour, France Van Vambeke, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 5891–5902, https://doi.org/10.5194/bg-18-5891-2021, https://doi.org/10.5194/bg-18-5891-2021, 2021
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We compared carbon remineralization rates (MRs) in the western and central Mediterranean Sea in late spring during the PEACETIME cruise, as assessed using the barium tracer. We reported higher and deeper (up to 1000 m depth) MRs in the western basin, potentially sustained by an additional particle export event driven by deep convection. The central basin is the site of a mosaic of blooming and non-blooming water masses and showed lower MRs that were restricted to the upper mesopelagic layer.
Shinsuke Kawagucci, Yohei Matsui, Akiko Makabe, Tatsuhiro Fukuba, Yuji Onishi, Takuro Nunoura, and Taichi Yokokawa
Biogeosciences, 18, 5351–5362, https://doi.org/10.5194/bg-18-5351-2021, https://doi.org/10.5194/bg-18-5351-2021, 2021
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Hydrogen and carbon isotope ratios of methane as well as the relevant biogeochemical parameters and microbial community compositions in hydrothermal plumes in the Okinawa Trough were observed. We succeeded in simultaneously determining hydrogen and carbon isotope fractionation factors associated with aerobic oxidation of methane in seawater (εH = 49.4 ± 5.0 ‰, εC = 5.2 ± 0.4 ‰) – the former being the first of its kind ever reported.
Nicolai Schleinkofer, David Evans, Max Wisshak, Janina Vanessa Büscher, Jens Fiebig, André Freiwald, Sven Härter, Horst R. Marschall, Silke Voigt, and Jacek Raddatz
Biogeosciences, 18, 4733–4753, https://doi.org/10.5194/bg-18-4733-2021, https://doi.org/10.5194/bg-18-4733-2021, 2021
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We have measured the chemical composition of the carbonate shells of the parasitic foraminifera Hyrrokkin sarcophaga in order to test if it is influenced by the host organism (bivalve or coral). We find that both the chemical and isotopic composition is influenced by the host organism. For example strontium is enriched in foraminifera that grew on corals, whose skeleton is built from aragonite, which is naturally enriched in strontium compared to the bivalves' calcite shell.
Lena Rohe, Traute-Heidi Anderson, Heinz Flessa, Anette Goeske, Dominika Lewicka-Szczebak, Nicole Wrage-Mönnig, and Reinhard Well
Biogeosciences, 18, 4629–4650, https://doi.org/10.5194/bg-18-4629-2021, https://doi.org/10.5194/bg-18-4629-2021, 2021
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This is the first experimental setup combining a complex set of methods (microbial inhibitors and isotopic approaches) to differentiate between N2O produced by fungi or bacteria during denitrification in three soils. Quantifying the fungal fraction with inhibitors was not successful due to large amounts of uninhibited N2O production. All successful methods suggested a small or missing fungal contribution. Artefacts occurring with microbial inhibition to determine N2O fluxes are discussed.
Inga Köhler, Raul E. Martinez, David Piatka, Achim J. Herrmann, Arianna Gallo, Michelle M. Gehringer, and Johannes A. C. Barth
Biogeosciences, 18, 4535–4548, https://doi.org/10.5194/bg-18-4535-2021, https://doi.org/10.5194/bg-18-4535-2021, 2021
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We investigated how high Fe(II) levels influence the O2 budget of a circum-neutral Fe(II)-rich spring and if a combined study of dissolved O (DO) and its isotopic composition can help assess this effect. We showed that dissolved Fe(II) can exert strong effects on the δ18ODO even though a constant supply of atmospheric O2 occurs. In the presence of photosynthesis, direct effects of Fe oxidation become masked. Critical Fe(II) concentrations indirectly control the DO by enhancing photosynthesis.
Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast
Biogeosciences, 18, 4491–4510, https://doi.org/10.5194/bg-18-4491-2021, https://doi.org/10.5194/bg-18-4491-2021, 2021
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Pacific water flowing eastward through the Canadian Arctic plays an important role in redistributing nutrients to the northwest Atlantic Ocean. Using samples collected from northern Baffin Bay to the southern Labrador Shelf, we show that stable isotopic ratios in seawater nitrate reflect the fraction of Pacific to Atlantic water. These results provide a new framework for interpreting patterns of nitrogen isotopic variability recorded in modern and archival organic materials in the region.
Franziska Slotta, Lukas Wacker, Frank Riedel, Karl-Uwe Heußner, Kai Hartmann, and Gerhard Helle
Biogeosciences, 18, 3539–3564, https://doi.org/10.5194/bg-18-3539-2021, https://doi.org/10.5194/bg-18-3539-2021, 2021
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The African baobab is a challenging climate and environmental archive for its semi-arid habitat due to dating uncertainties and parenchyma-rich wood anatomy. Annually resolved F14C data of tree-ring cellulose (1941–2005) from a tree in Oman show the annual character of the baobab’s growth rings but were up to 8.8 % lower than expected for 1964–1967. Subseasonal δ13C and δ18O patterns reveal years with low average monsoon rain as well as heavy rainfall events from pre-monsoonal cyclones.
Peter M. J. Douglas, Emerald Stratigopoulos, Sanga Park, and Dawson Phan
Biogeosciences, 18, 3505–3527, https://doi.org/10.5194/bg-18-3505-2021, https://doi.org/10.5194/bg-18-3505-2021, 2021
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Hydrogen isotopes could be a useful tool to help resolve the geographic distribution of methane emissions from freshwater environments. We analyzed an expanded global dataset of freshwater methane hydrogen isotope ratios and found significant geographic variation linked to water isotopic composition. This geographic variability could be used to resolve changing methane fluxes from freshwater environments and provide more accurate estimates of the relative balance of global methane sources.
Veronica R. Rollinson, Julie Granger, Sydney C. Clark, Mackenzie L. Blanusa, Claudia P. Koerting, Jamie M. P. Vaudrey, Lija A. Treibergs, Holly C. Westbrook, Catherine M. Matassa, Meredith G. Hastings, and Craig R. Tobias
Biogeosciences, 18, 3421–3444, https://doi.org/10.5194/bg-18-3421-2021, https://doi.org/10.5194/bg-18-3421-2021, 2021
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We measured nutrients and the naturally occurring nitrogen (N) and oxygen (O) stable isotope ratios of nitrate discharged from a New England river over an annual cycle, to monitor N loading and identify dominant sources from the watershed. We uncovered a seasonality to loading and sources of N from the watershed. Seasonality in the nitrate isotope ratios also informed on N cycling, conforming to theoretical expectations of riverine nutrient cycling.
Zixun Chen, Xuejun Liu, Xiaoqing Cui, Yaowen Han, Guoan Wang, and Jiazhu Li
Biogeosciences, 18, 2859–2870, https://doi.org/10.5194/bg-18-2859-2021, https://doi.org/10.5194/bg-18-2859-2021, 2021
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δ13C in plants is a sensitive long-term indicator of physiological acclimatization. The present study suggests that precipitation change and increasing atmospheric N deposition have little impact on δ13C of H. ammodendron, a dominant plant in central Asian deserts, but affect its gas exchange. In addition, this study shows that δ13C of H. ammodendron could not indicate its water use efficiency (WUE), suggesting that whether δ13C of C4 plants indicates WUE is species-specific.
Petra Zahajská, Carolina Olid, Johanna Stadmark, Sherilyn C. Fritz, Sophie Opfergelt, and Daniel J. Conley
Biogeosciences, 18, 2325–2345, https://doi.org/10.5194/bg-18-2325-2021, https://doi.org/10.5194/bg-18-2325-2021, 2021
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The drivers of high accumulation of single-cell siliceous algae (diatoms) in a high-latitude lake have not been fully characterized before. We studied silicon cycling of the lake through water, radon, silicon, and stable silicon isotope balances. Results showed that groundwater brings 3 times more water and dissolved silica than the stream inlet. We demonstrate that groundwater discharge and low sediment deposition have driven the high diatom accumulation in the studied lake in the past century.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671, https://doi.org/10.5194/bg-18-1645-2021, https://doi.org/10.5194/bg-18-1645-2021, 2021
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The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Zhongjie Yu and Emily M. Elliott
Biogeosciences, 18, 805–829, https://doi.org/10.5194/bg-18-805-2021, https://doi.org/10.5194/bg-18-805-2021, 2021
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In this study, we demonstrated distinct nitrogen isotope effects for nitric oxide (NO) production from major microbial and chemical NO sources in an agricultural soil. These results highlight characteristic bond-forming and breaking mechanisms associated with microbial and chemical NO production and implicate that simultaneous isotopic analyses of NO and nitrous oxide (N2O) can lead to unprecedented insights into the sources and processes controlling NO and N2O emissions from agricultural soils.
Daniel A. Frick, Rainer Remus, Michael Sommer, Jürgen Augustin, Danuta Kaczorek, and Friedhelm von Blanckenburg
Biogeosciences, 17, 6475–6490, https://doi.org/10.5194/bg-17-6475-2020, https://doi.org/10.5194/bg-17-6475-2020, 2020
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Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Quentin Charbonnier, Julien Bouchez, Jérôme Gaillardet, and Éric Gayer
Biogeosciences, 17, 5989–6015, https://doi.org/10.5194/bg-17-5989-2020, https://doi.org/10.5194/bg-17-5989-2020, 2020
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The abundance and isotope composition of the trace metal barium (Ba) allows us to track and quantify nutrient cycling throughout the Amazon Basin. In particular, we show that the Ba biological fingerprint evolves from that of a strong net nutrient uptake in the mountainous area of the Andes towards efficient nutrient recycling on the plains of the Lower Amazon. Our study highlights the fact that the geochemical signature of rock-derived nutrients transported by the Amazon is scarred by life.
Ajinkya G. Deshpande, Thomas W. Boutton, Ayumi Hyodo, Charles W. Lafon, and Georgianne W. Moore
Biogeosciences, 17, 5639–5653, https://doi.org/10.5194/bg-17-5639-2020, https://doi.org/10.5194/bg-17-5639-2020, 2020
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Wetland forests in the southern USA are threatened by changing climate and human-induced pressures. We used tree ring widths and C isotopes as indicators of forest growth and physiological stress, respectively, and compared these to past climate data. We observed that vegetation growing in the drier patches is susceptible to stress, while vegetation growth and physiology in wetter patches is less sensitive to unfavorable environmental conditions, highlighting the importance of optimal wetness.
Dominika Lewicka-Szczebak, Maciej Piotr Lewicki, and Reinhard Well
Biogeosciences, 17, 5513–5537, https://doi.org/10.5194/bg-17-5513-2020, https://doi.org/10.5194/bg-17-5513-2020, 2020
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We present the first validation of N2O isotopic approaches for estimating N2O source pathways and N2O reduction. These approaches are widely used for tracing soil nitrogen cycling, but the results of these estimations are very uncertain. Here we report the results from parallel treatments allowing for precise validation of these approaches, and we propose the best strategies for results interpretation, including the new idea of an isotope model integrating three isotopic signatures of N2O.
Markus Raitzsch, Claire Rollion-Bard, Ingo Horn, Grit Steinhoefel, Albert Benthien, Klaus-Uwe Richter, Matthieu Buisson, Pascale Louvat, and Jelle Bijma
Biogeosciences, 17, 5365–5375, https://doi.org/10.5194/bg-17-5365-2020, https://doi.org/10.5194/bg-17-5365-2020, 2020
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The isotopic composition of boron in carbonate shells of marine unicellular organisms is a popular tool to estimate seawater pH. Usually, many shells need to be dissolved and measured for boron isotopes, but the information on their spatial distribution is lost. Here, we investigate two techniques that allow for measuring boron isotopes within single shells and show that they yield robust mean values but provide additional information on the heterogeneity within and between single shells.
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Short summary
The nitrogen content of leaves is a key quantity for understanding ecosystem function. We analysed variations in nitrogen per unit leaf area among species at sites along a transect across Australia including many climates and ecosystem types. The data could be explained by the idea that leaf nitrogen comprises two parts, one proportional to leaf mass, the other (metabolic) part proportional to light intensity and declining with CO2 drawdown and temperature, as optimal allocation theory predicts.
The nitrogen content of leaves is a key quantity for understanding ecosystem function. We...
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