Articles | Volume 15, issue 15
https://doi.org/10.5194/bg-15-4833-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-4833-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
15 Aug 2018
Research article |
| 15 Aug 2018
| 15 Aug 2018
Carbon exchange in an Amazon forest: from hours to years
Harvard Law School, Cambridge, MA, USA
Marcos Longo
NASA Jet Propulsion Laboratory, California Institute of
Technology, Pasadena, CA, USA
Biological, Environmental & Climate Sciences Department,
Brookhaven National Lab, Upton, New York, NY, USA
Marielle N. Smith
Department of Forestry, Michigan State University, East Lansing, MI,
USA
Natalia Restrepo-Coupe
Plant Functional Biology and Climate Change Cluster, University of
Technology Sydney, Sydney, NSW, Australia
Raphael Tapajós
Universidade Federal do Oeste do Pará, Santarém, PA, Brazil
Rodrigo da Silva
Universidade Federal do Oeste do Pará, Santarém, PA, Brazil
David R. Fitzjarrald
University at Albany SUNY, Albany, NY, USA
Plinio B. Camargo
Centro de Energia Nuclear na Agricultura, Universidade de São
Paulo, Piracicaba, SP, Brazil
Lucy R. Hutyra
Department of Earth and Environment, Boston University, Boston, MA, USA
Luciana F. Alves
Center for Tropical Research, Institute of the Environment and
Sustainability, UCLA, Los Angeles, CA, USA
Bruce Daube
Faculty of Arts and Sciences, Harvard University, Cambridge, MA,
USA
J. William Munger
Faculty of Arts and Sciences, Harvard University, Cambridge, MA,
USA
Kenia T. Wiedemann
Faculty of Arts and Sciences, Harvard University, Cambridge, MA,
USA
Scott R. Saleska
Department of Ecology and Evolutionary Biology, University of
Arizona, Tucson, AZ, USA
Steven C. Wofsy
Faculty of Arts and Sciences, Harvard University, Cambridge, MA,
USA
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Lei Hu, Stephen A. Montzka, Fred Moore, Eric Hintsa, Geoff Dutton, M. Carolina Siso, Kirk Thoning, Robert W. Portmann, Kathryn McKain, Colm Sweeney, Isaac Vimont, David Nance, Bradley Hall, and Steven Wofsy
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Eric J. Hintsa, Fred L. Moore, Dale F. Hurst, Geoff S. Dutton, Bradley D. Hall, J. David Nance, Ben R. Miller, Stephen A. Montzka, Laura P. Wolton, Audra McClure-Begley, James W. Elkins, Emrys G. Hall, Allen F. Jordan, Andrew W. Rollins, Troy D. Thornberry, Laurel A. Watts, Chelsea R. Thompson, Jeff Peischl, Ilann Bourgeois, Thomas B. Ryerson, Bruce C. Daube, Yenny Gonzalez Ramos, Roisin Commane, Gregory W. Santoni, Jasna V. Pittman, Steven C. Wofsy, Eric Kort, Glenn S. Diskin, and T. Paul Bui
Atmos. Meas. Tech., 14, 6795–6819, https://doi.org/10.5194/amt-14-6795-2021, https://doi.org/10.5194/amt-14-6795-2021, 2021
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Atmos. Chem. Phys., 21, 15023–15063, https://doi.org/10.5194/acp-21-15023-2021, https://doi.org/10.5194/acp-21-15023-2021, 2021
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Hao Guo, Clare M. Flynn, Michael J. Prather, Sarah A. Strode, Stephen D. Steenrod, Louisa Emmons, Forrest Lacey, Jean-Francois Lamarque, Arlene M. Fiore, Gus Correa, Lee T. Murray, Glenn M. Wolfe, Jason M. St. Clair, Michelle Kim, John Crounse, Glenn Diskin, Joshua DiGangi, Bruce C. Daube, Roisin Commane, Kathryn McKain, Jeff Peischl, Thomas B. Ryerson, Chelsea Thompson, Thomas F. Hanisco, Donald Blake, Nicola J. Blake, Eric C. Apel, Rebecca S. Hornbrook, James W. Elkins, Eric J. Hintsa, Fred L. Moore, and Steven Wofsy
Atmos. Chem. Phys., 21, 13729–13746, https://doi.org/10.5194/acp-21-13729-2021, https://doi.org/10.5194/acp-21-13729-2021, 2021
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Yenny Gonzalez, Róisín Commane, Ethan Manninen, Bruce C. Daube, Luke D. Schiferl, J. Barry McManus, Kathryn McKain, Eric J. Hintsa, James W. Elkins, Stephen A. Montzka, Colm Sweeney, Fred Moore, Jose L. Jimenez, Pedro Campuzano Jost, Thomas B. Ryerson, Ilann Bourgeois, Jeff Peischl, Chelsea R. Thompson, Eric Ray, Paul O. Wennberg, John Crounse, Michelle Kim, Hannah M. Allen, Paul A. Newman, Britton B. Stephens, Eric C. Apel, Rebecca S. Hornbrook, Benjamin A. Nault, Eric Morgan, and Steven C. Wofsy
Atmos. Chem. Phys., 21, 11113–11132, https://doi.org/10.5194/acp-21-11113-2021, https://doi.org/10.5194/acp-21-11113-2021, 2021
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Anna B. Harper, Karina E. Williams, Patrick C. McGuire, Maria Carolina Duran Rojas, Debbie Hemming, Anne Verhoef, Chris Huntingford, Lucy Rowland, Toby Marthews, Cleiton Breder Eller, Camilla Mathison, Rodolfo L. B. Nobrega, Nicola Gedney, Pier Luigi Vidale, Fred Otu-Larbi, Divya Pandey, Sebastien Garrigues, Azin Wright, Darren Slevin, Martin G. De Kauwe, Eleanor Blyth, Jonas Ardö, Andrew Black, Damien Bonal, Nina Buchmann, Benoit Burban, Kathrin Fuchs, Agnès de Grandcourt, Ivan Mammarella, Lutz Merbold, Leonardo Montagnani, Yann Nouvellon, Natalia Restrepo-Coupe, and Georg Wohlfahrt
Geosci. Model Dev., 14, 3269–3294, https://doi.org/10.5194/gmd-14-3269-2021, https://doi.org/10.5194/gmd-14-3269-2021, 2021
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We evaluated 10 representations of soil moisture stress in the JULES land surface model against site observations of GPP and latent heat flux. Increasing the soil depth and plant access to deep soil moisture improved many aspects of the simulations, and we recommend these settings in future work using JULES. In addition, using soil matric potential presents the opportunity to include parameters specific to plant functional type to further improve modeled fluxes.
Carly Staebell, Kang Sun, Jenna Samra, Jonathan Franklin, Christopher Chan Miller, Xiong Liu, Eamon Conway, Kelly Chance, Scott Milligan, and Steven Wofsy
Atmos. Meas. Tech., 14, 3737–3753, https://doi.org/10.5194/amt-14-3737-2021, https://doi.org/10.5194/amt-14-3737-2021, 2021
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Given the high global warming potential of CH4, the identification and subsequent reduction of anthropogenic CH4 emissions presents a significant opportunity for climate change mitigation. Satellites are an integral piece of this puzzle, providing data to quantify emissions at a variety of spatial scales. This work presents the spectral calibration of MethaneAIR, the airborne instrument used as a test bed for the forthcoming MethaneSAT satellite.
Richard Wehr and Scott R. Saleska
Biogeosciences, 18, 13–24, https://doi.org/10.5194/bg-18-13-2021, https://doi.org/10.5194/bg-18-13-2021, 2021
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Water and carbon exchange between plants and the atmosphere is governed by stomata: adjustable pores in the surfaces of leaves. The combined gas conductance of all the stomata in a canopy has long been estimated using an equation that is shown here to be systematically incorrect because it relies on measurements that are generally inadequate. An alternative approach is shown to be more accurate in all probable scenarios and to imply different responses of stomatal conductance to the environment.
Benjamin Birner, Martyn P. Chipperfield, Eric J. Morgan, Britton B. Stephens, Marianna Linz, Wuhu Feng, Chris Wilson, Jonathan D. Bent, Steven C. Wofsy, Jeffrey Severinghaus, and Ralph F. Keeling
Atmos. Chem. Phys., 20, 12391–12408, https://doi.org/10.5194/acp-20-12391-2020, https://doi.org/10.5194/acp-20-12391-2020, 2020
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With new high-precision observations from nine aircraft campaigns and 3-D chemical transport modeling, we show that the argon-to-nitrogen ratio (Ar / N2) in the lowermost stratosphere provides a useful constraint on the “age of air” (the time elapsed since entry of an air parcel into the stratosphere). Therefore, Ar / N2 in combination with traditional age-of-air indicators, such as CO2 and N2O, could provide new insights into atmospheric mixing and transport.
Maoyi Huang, Yi Xu, Marcos Longo, Michael Keller, Ryan G. Knox, Charles D. Koven, and Rosie A. Fisher
Biogeosciences, 17, 4999–5023, https://doi.org/10.5194/bg-17-4999-2020, https://doi.org/10.5194/bg-17-4999-2020, 2020
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The Functionally Assembled Terrestrial Ecosystem Simulator (FATES) is enhanced to mimic the ecological, biophysical, and biogeochemical processes following a logging event. The model can specify the timing and aerial extent of logging events; determine the survivorship of cohorts in the disturbed forest; and modifying the biomass, coarse woody debris, and litter pools. This study lays the foundation to simulate land use change and forest degradation in FATES as part of an Earth system model.
Sara Martínez-Alonso, Merritt Deeter, Helen Worden, Tobias Borsdorff, Ilse Aben, Róisin Commane, Bruce Daube, Gene Francis, Maya George, Jochen Landgraf, Debbie Mao, Kathryn McKain, and Steven Wofsy
Atmos. Meas. Tech., 13, 4841–4864, https://doi.org/10.5194/amt-13-4841-2020, https://doi.org/10.5194/amt-13-4841-2020, 2020
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CO is of great importance in climate and air quality studies. To understand newly available TROPOMI data in the frame of the global CO record, we compared those to satellite (MOPITT) and airborne (ATom) CO datasets. The MOPITT dataset is the longest to date (2000–present) and is well-characterized. We used ATom to validate cloudy TROPOMI data over oceans and investigate TROPOMI's vertical sensitivity to CO. Our results show that TROPOMI CO data are in excellent agreement with the other datasets.
Ilann Bourgeois, Jeff Peischl, Chelsea R. Thompson, Kenneth C. Aikin, Teresa Campos, Hannah Clark, Róisín Commane, Bruce Daube, Glenn W. Diskin, James W. Elkins, Ru-Shan Gao, Audrey Gaudel, Eric J. Hintsa, Bryan J. Johnson, Rigel Kivi, Kathryn McKain, Fred L. Moore, David D. Parrish, Richard Querel, Eric Ray, Ricardo Sánchez, Colm Sweeney, David W. Tarasick, Anne M. Thompson, Valérie Thouret, Jacquelyn C. Witte, Steve C. Wofsy, and Thomas B. Ryerson
Atmos. Chem. Phys., 20, 10611–10635, https://doi.org/10.5194/acp-20-10611-2020, https://doi.org/10.5194/acp-20-10611-2020, 2020
Kurt C. Solander, Brent D. Newman, Alessandro Carioca de Araujo, Holly R. Barnard, Z. Carter Berry, Damien Bonal, Mario Bretfeld, Benoit Burban, Luiz Antonio Candido, Rolando Célleri, Jeffery Q. Chambers, Bradley O. Christoffersen, Matteo Detto, Wouter A. Dorigo, Brent E. Ewers, Savio José Filgueiras Ferreira, Alexander Knohl, L. Ruby Leung, Nate G. McDowell, Gretchen R. Miller, Maria Terezinha Ferreira Monteiro, Georgianne W. Moore, Robinson Negron-Juarez, Scott R. Saleska, Christian Stiegler, Javier Tomasella, and Chonggang Xu
Hydrol. Earth Syst. Sci., 24, 2303–2322, https://doi.org/10.5194/hess-24-2303-2020, https://doi.org/10.5194/hess-24-2303-2020, 2020
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We evaluate the soil moisture response in the humid tropics to El Niño during the three most recent super El Niño events. Our estimates are compared to in situ soil moisture estimates that span five continents. We find the strongest and most consistent soil moisture decreases in the Amazon and maritime southeastern Asia, while the most consistent increases occur over eastern Africa. Our results can be used to improve estimates of soil moisture in tropical ecohydrology models at multiple scales.
Archana Dayalu, J. William Munger, Yuxuan Wang, Steven C. Wofsy, Yu Zhao, Thomas Nehrkorn, Chris Nielsen, Michael B. McElroy, and Rachel Chang
Atmos. Chem. Phys., 20, 3569–3588, https://doi.org/10.5194/acp-20-3569-2020, https://doi.org/10.5194/acp-20-3569-2020, 2020
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China has pledged to reduce carbon dioxide emissions per unit GDP by 60–65 % relative to 2005 levels, and to peak carbon emissions overall by 2030. Disagreement among available inventories of Chinese emissions makes it difficult for China to track progress toward its goals and evaluate the efficacy of regional control measures. This study uses a unique set of historical atmospheric observations for the key period from 2005 to 2009 to independently evaluate three different CO2 emission estimates.
Marcos Longo, Ryan G. Knox, David M. Medvigy, Naomi M. Levine, Michael C. Dietze, Yeonjoo Kim, Abigail L. S. Swann, Ke Zhang, Christine R. Rollinson, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4309–4346, https://doi.org/10.5194/gmd-12-4309-2019, https://doi.org/10.5194/gmd-12-4309-2019, 2019
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Our paper describes the Ecosystem Demography model. This computer program calculates how plants and ground exchange heat, water, and carbon with the air, and how plants grow, reproduce and die in different climates. Most models simplify forests to an average big tree. We consider that tall, deep-rooted trees get more light and water than small plants, and that some plants can with shade and drought. This diversity helps us to better explain how plants live and interact with the atmosphere.
Marcos Longo, Ryan G. Knox, Naomi M. Levine, Abigail L. S. Swann, David M. Medvigy, Michael C. Dietze, Yeonjoo Kim, Ke Zhang, Damien Bonal, Benoit Burban, Plínio B. Camargo, Matthew N. Hayek, Scott R. Saleska, Rodrigo da Silva, Rafael L. Bras, Steven C. Wofsy, and Paul R. Moorcroft
Geosci. Model Dev., 12, 4347–4374, https://doi.org/10.5194/gmd-12-4347-2019, https://doi.org/10.5194/gmd-12-4347-2019, 2019
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The Ecosystem Demography model calculates the fluxes of heat, water, and carbon between plants and ground and the air, and the life cycle of plants in different climates. To test if our calculations were reasonable, we compared our results with field and satellite measurements. Our model predicts well the extent of the Amazon forest, how much light forests absorb, and how much water forests release to the air. However, it must improve the tree growth rates and how fast dead plants decompose.
Marcos A. S. Scaranello, Michael Keller, Marcos Longo, Maiza N. dos-Santos, Veronika Leitold, Douglas C. Morton, Ekena R. Pinagé, and Fernando Del Bon Espírito-Santo
Biogeosciences, 16, 3457–3474, https://doi.org/10.5194/bg-16-3457-2019, https://doi.org/10.5194/bg-16-3457-2019, 2019
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The coarse dead wood component of the tropical forest carbon pool is rarely measured. For the first time, we developed models for predicting coarse dead wood in Amazonian forests by using airborne laser scanning data. Our models produced site-based estimates similar to independent field estimates found in the literature. Our study provides an approach for estimating coarse dead wood pools from remotely sensed data and mapping those pools over large scales in intact and degraded forests.
Mark O. Battle, J. William Munger, Margaret Conley, Eric Sofen, Rebecca Perry, Ryan Hart, Zane Davis, Jacob Scheckman, Jayme Woogerd, Karina Graeter, Samuel Seekins, Sasha David, and John Carpenter
Atmos. Chem. Phys., 19, 8687–8701, https://doi.org/10.5194/acp-19-8687-2019, https://doi.org/10.5194/acp-19-8687-2019, 2019
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Predictions of global warming require predictions of how much CO2 will be taken up by the oceans, how much by land plants, and how much will stay in the atmosphere. Measurements of atmospheric oxygen (O2) help with these predictions if we also know the ratio of O2 release to CO2 uptake in land plants. We have measured this ratio in a midlatitude forest and find a lower value than the one in wide use. If truly applicable, our results call for a modest adjustment in the global carbon budget.
Kuang-Yu Chang, William J. Riley, Patrick M. Crill, Robert F. Grant, Virginia I. Rich, and Scott R. Saleska
The Cryosphere, 13, 647–663, https://doi.org/10.5194/tc-13-647-2019, https://doi.org/10.5194/tc-13-647-2019, 2019
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Permafrost peatlands store large amounts of carbon potentially vulnerable to decomposition under changing climate. We estimated effects of climate forcing biases on carbon cycling at a thawing permafrost peatland in subarctic Sweden. Our results indicate that many climate reanalysis products are cold and wet biased in our study region, leading to erroneous active layer depth and carbon budget estimates. Future studies should recognize the effects of climate forcing uncertainty on carbon cycling.
Shaojie Song, Meng Gao, Weiqi Xu, Yele Sun, Douglas R. Worsnop, John T. Jayne, Yuzhong Zhang, Lei Zhu, Mei Li, Zhen Zhou, Chunlei Cheng, Yibing Lv, Ying Wang, Wei Peng, Xiaobin Xu, Nan Lin, Yuxuan Wang, Shuxiao Wang, J. William Munger, Daniel J. Jacob, and Michael B. McElroy
Atmos. Chem. Phys., 19, 1357–1371, https://doi.org/10.5194/acp-19-1357-2019, https://doi.org/10.5194/acp-19-1357-2019, 2019
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Chemistry responsible for sulfate production in northern China winter haze remains mysterious. We propose a potentially key pathway through the reaction of formaldehyde and sulfur dioxide that has not been accounted for in previous studies. The special atmospheric conditions favor the formation and existence of their complex, hydroxymethanesulfonate (HMS).
Archana Dayalu, J. William Munger, Steven C. Wofsy, Yuxuan Wang, Thomas Nehrkorn, Yu Zhao, Michael B. McElroy, Chris P. Nielsen, and Kristina Luus
Biogeosciences, 15, 6713–6729, https://doi.org/10.5194/bg-15-6713-2018, https://doi.org/10.5194/bg-15-6713-2018, 2018
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Accounting for the vegetation signal is critical for comprehensive CO2 budget assessment in China. We model and evaluate hourly vegetation carbon dioxide (CO2) exchange (mass per unit area per unit time) in northern China from 2005 to 2009. The model is driven by satellite and meteorological data, is linked to ground-level ecosystem observations, and is applicable to other time periods. We find vegetation uptake of CO2 in summer is comparable to emissions from fossil fuels in northern China.
Archana Dayalu, J. William Munger, Yuxuan Wang, Steven C. Wofsy, Yu Zhao, Thomas Nehrkorn, Chris Nielsen, Michael B. McElroy, and Rachel Chang
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2018-632, https://doi.org/10.5194/acp-2018-632, 2018
Revised manuscript not accepted
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China has pledged reduction of carbon dioxide emissions per unit GDP by 60–65 % relative to 2005 levels, and to peak carbon emissions overall by 2030. Disagreement among available inventories of Chinese emissions makes it difficult for China to track progress toward its goals and evaluate the efficacy of regional control measures. This study uses a unique set of historical atmospheric observations for the key period from 2005–2009 to independently evaluate three different CO2 emissions estimates.
Jason A. Ducker, Christopher D. Holmes, Trevor F. Keenan, Silvano Fares, Allen H. Goldstein, Ivan Mammarella, J. William Munger, and Jordan Schnell
Biogeosciences, 15, 5395–5413, https://doi.org/10.5194/bg-15-5395-2018, https://doi.org/10.5194/bg-15-5395-2018, 2018
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We have developed an accurate method (SynFlux) to estimate ozone deposition and stomatal uptake across 103 flux tower sites (43 US, 60 Europe), where ozone concentrations and fluxes have not been measured. In all, the SynFlux public dataset provides monthly values of ozone dry deposition for 926 site years across a wide array of ecosystems. The SynFlux dataset will promote further applications to ecosystem, air quality, or climate modeling across the geoscience community.
Sarah A. Strode, Junhua Liu, Leslie Lait, Róisín Commane, Bruce Daube, Steven Wofsy, Austin Conaty, Paul Newman, and Michael Prather
Atmos. Chem. Phys., 18, 10955–10971, https://doi.org/10.5194/acp-18-10955-2018, https://doi.org/10.5194/acp-18-10955-2018, 2018
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The GEOS-5 atmospheric model provided forecasts for the Atmospheric Tomography Mission (ATom). GEOS-5 shows skill in simulating the carbon monoxide (CO) measured in ATom-1. African fires contribute to high CO over the tropical Atlantic, but non-fire sources are the main contributors elsewhere. ATom aims to provide a chemical climatology, so we consider whether ATom-1 occurred during a typical summer month. Satellite observations suggest ATom-1 occurred in a clean but not exceptional month.
Eliane G. Alves, Julio Tóta, Andrew Turnipseed, Alex B. Guenther, José Oscar W. Vega Bustillos, Raoni A. Santana, Glauber G. Cirino, Julia V. Tavares, Aline P. Lopes, Bruce W. Nelson, Rodrigo A. de Souza, Dasa Gu, Trissevgeni Stavrakou, David K. Adams, Jin Wu, Scott Saleska, and Antonio O. Manzi
Biogeosciences, 15, 4019–4032, https://doi.org/10.5194/bg-15-4019-2018, https://doi.org/10.5194/bg-15-4019-2018, 2018
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This study shows that leaf quantity and leaf age have an important effect on seasonal changes in isoprene emissions and that these could play an even more important role in regulating ecosystem isoprene fluxes than light and temperature at seasonal timescales in tropical forests. These results bring novelty and new insight for future research because in the past leaf phenology was not considered as an important factor that controls biological processes in the tropics.
Mary E. Whelan, Sinikka T. Lennartz, Teresa E. Gimeno, Richard Wehr, Georg Wohlfahrt, Yuting Wang, Linda M. J. Kooijmans, Timothy W. Hilton, Sauveur Belviso, Philippe Peylin, Róisín Commane, Wu Sun, Huilin Chen, Le Kuai, Ivan Mammarella, Kadmiel Maseyk, Max Berkelhammer, King-Fai Li, Dan Yakir, Andrew Zumkehr, Yoko Katayama, Jérôme Ogée, Felix M. Spielmann, Florian Kitz, Bharat Rastogi, Jürgen Kesselmeier, Julia Marshall, Kukka-Maaria Erkkilä, Lisa Wingate, Laura K. Meredith, Wei He, Rüdiger Bunk, Thomas Launois, Timo Vesala, Johan A. Schmidt, Cédric G. Fichot, Ulli Seibt, Scott Saleska, Eric S. Saltzman, Stephen A. Montzka, Joseph A. Berry, and J. Elliott Campbell
Biogeosciences, 15, 3625–3657, https://doi.org/10.5194/bg-15-3625-2018, https://doi.org/10.5194/bg-15-3625-2018, 2018
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Measurements of the trace gas carbonyl sulfide (OCS) are helpful in quantifying photosynthesis at previously unknowable temporal and spatial scales. While CO2 is both consumed and produced within ecosystems, OCS is mostly produced in the oceans or from specific industries, and destroyed in plant leaves in proportion to CO2. This review summarizes the advancements we have made in the understanding of OCS exchange and applications to vital ecosystem water and carbon cycle questions.
Sean Hartery, Róisín Commane, Jakob Lindaas, Colm Sweeney, John Henderson, Marikate Mountain, Nicholas Steiner, Kyle McDonald, Steven J. Dinardo, Charles E. Miller, Steven C. Wofsy, and Rachel Y.-W. Chang
Atmos. Chem. Phys., 18, 185–202, https://doi.org/10.5194/acp-18-185-2018, https://doi.org/10.5194/acp-18-185-2018, 2018
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Methane is the second most important greenhouse gas but its emissions from northern regions are still poorly constrained. This study uses aircraft measurements of methane from Alaska to estimate surface emissions. We found that methane emission rates depend on the soil temperature at depths where its production was taking place, and that total emissions were similar between tundra and boreal regions. These results provide a simple way to predict methane emissions in this region.
Demerval S. Moreira, Karla M. Longo, Saulo R. Freitas, Marcia A. Yamasoe, Lina M. Mercado, Nilton E. Rosário, Emauel Gloor, Rosane S. M. Viana, John B. Miller, Luciana V. Gatti, Kenia T. Wiedemann, Lucas K. G. Domingues, and Caio C. S. Correia
Atmos. Chem. Phys., 17, 14785–14810, https://doi.org/10.5194/acp-17-14785-2017, https://doi.org/10.5194/acp-17-14785-2017, 2017
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Fire in the Amazon forest produces a large amount of smoke that is released into the atmosphere and covers a large portion of South America for about 3 months each year. The smoke affects the energy and CO2 budgets. Using a numerical atmospheric model, we demonstrated that the smoke changes the forest from a source to a sink of CO2 to the atmosphere. The smoke ultimately acts to at least partially compensate for the forest carbon lost due to fire emissions.
Dan Lu, Daniel Ricciuto, Anthony Walker, Cosmin Safta, and William Munger
Biogeosciences, 14, 4295–4314, https://doi.org/10.5194/bg-14-4295-2017, https://doi.org/10.5194/bg-14-4295-2017, 2017
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Calibration of terrestrial ecosystem models (TEMs) is important but challenging. This study applies an advanced sampling technique for parameter estimation of a TEM. The results improve the model fit and predictive performance.
Camille Viatte, Thomas Lauvaux, Jacob K. Hedelius, Harrison Parker, Jia Chen, Taylor Jones, Jonathan E. Franklin, Aijun J. Deng, Brian Gaudet, Kristal Verhulst, Riley Duren, Debra Wunch, Coleen Roehl, Manvendra K. Dubey, Steve Wofsy, and Paul O. Wennberg
Atmos. Chem. Phys., 17, 7509–7528, https://doi.org/10.5194/acp-17-7509-2017, https://doi.org/10.5194/acp-17-7509-2017, 2017
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This study estimates methane emissions at local scale in dairy farms using four new mobile ground-based remote sensing spectrometers (EM27/SUN) and isotopic in situ measurements. Our top-down estimates are in the low end of previous studies. Inverse modeling from a comprehensive high-resolution model simulations (WRF-LES) is used to assess the geographical distribution of the emissions. Both the model and the measurements indicate a mixture of anthropogenic and biogenic emissions.
Laurent Barbiero, Marcos Siqueira Neto, Rosangela Rodrigues Braz, Janaina Braga de Carmo, Ary Tavares Rezende Filho, Edmar Mazzi, Fernando Antonio Fernandes, Sandra Regina Damatto, and Plinio Barbosa de Camargo
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-108, https://doi.org/10.5194/bg-2017-108, 2017
Manuscript not accepted for further review
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Large tropical alkaline wetlands are likely to contribute significantly to the global GHG emissions budget, but little data are available. The study shows the diversity of situations that depend on local biogeochemical processes and their stage of development during the season. Hot moments are identified and must be taken into account for calculating the regional emission budget.
Jochen Stutz, Bodo Werner, Max Spolaor, Lisa Scalone, James Festa, Catalina Tsai, Ross Cheung, Santo F. Colosimo, Ugo Tricoli, Rasmus Raecke, Ryan Hossaini, Martyn P. Chipperfield, Wuhu Feng, Ru-Shan Gao, Eric J. Hintsa, James W. Elkins, Fred L. Moore, Bruce Daube, Jasna Pittman, Steven Wofsy, and Klaus Pfeilsticker
Atmos. Meas. Tech., 10, 1017–1042, https://doi.org/10.5194/amt-10-1017-2017, https://doi.org/10.5194/amt-10-1017-2017, 2017
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A new limb-scanning Differential Optical Absorption Spectroscopy (DOAS) instrument was developed for NASA’s Global Hawk unmanned aerial system during the Airborne Tropical TRopopause EXperiment to study trace gases in the tropical tropopause layer. A new technique that uses in situ and DOAS O3 observations together with radiative transfer calculations allows the retrieval of mixing ratios from the slant column densities of BrO and NO2 at high accuracies of 0.5 ppt and 15 ppt, respectively.
Richard Wehr, Róisín Commane, J. William Munger, J. Barry McManus, David D. Nelson, Mark S. Zahniser, Scott R. Saleska, and Steven C. Wofsy
Biogeosciences, 14, 389–401, https://doi.org/10.5194/bg-14-389-2017, https://doi.org/10.5194/bg-14-389-2017, 2017
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Leaf stomata influence both photosynthesis and transpiration, coupling the carbon and water cycles, but there is no direct method for estimating stomatal behavior on the ecosystem scale. We use the ecosystem–atmosphere exchange of water, heat, and carbonyl sulfide to estimate canopy-integrated stomatal conductance by two independent methods. We then use that conductance to show that the seasonal dynamics of transpiration and evaporation are different than represented in current biosphere models.
Bodo Werner, Jochen Stutz, Max Spolaor, Lisa Scalone, Rasmus Raecke, James Festa, Santo Fedele Colosimo, Ross Cheung, Catalina Tsai, Ryan Hossaini, Martyn P. Chipperfield, Giorgio S. Taverna, Wuhu Feng, James W. Elkins, David W. Fahey, Ru-Shan Gao, Erik J. Hintsa, Troy D. Thornberry, Free Lee Moore, Maria A. Navarro, Elliot Atlas, Bruce C. Daube, Jasna Pittman, Steve Wofsy, and Klaus Pfeilsticker
Atmos. Chem. Phys., 17, 1161–1186, https://doi.org/10.5194/acp-17-1161-2017, https://doi.org/10.5194/acp-17-1161-2017, 2017
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The paper reports on inorganic and organic bromine measured in the tropical tropopause layer (TTL) over the eastern Pacific in early 2013. Bryinorg is found to increase from a mean of 2.63 ± 1.04 ppt for θ in the range of 350–360 K to 5.11 ± 1.57 ppt for θ=390 ± 400 K, whereas in the subtropical lower stratosphere, it reaches 7.66 ± 2.95 ppt for θ in the range of 390–400 K. Within the TTL, total bromine is found to range from 20.3 ppt to 22.3 ppt.
Saulo R. Freitas, Jairo Panetta, Karla M. Longo, Luiz F. Rodrigues, Demerval S. Moreira, Nilton E. Rosário, Pedro L. Silva Dias, Maria A. F. Silva Dias, Enio P. Souza, Edmilson D. Freitas, Marcos Longo, Ariane Frassoni, Alvaro L. Fazenda, Cláudio M. Santos e Silva, Cláudio A. B. Pavani, Denis Eiras, Daniela A. França, Daniel Massaru, Fernanda B. Silva, Fernando C. Santos, Gabriel Pereira, Gláuber Camponogara, Gonzalo A. Ferrada, Haroldo F. Campos Velho, Isilda Menezes, Julliana L. Freire, Marcelo F. Alonso, Madeleine S. Gácita, Maurício Zarzur, Rafael M. Fonseca, Rafael S. Lima, Ricardo A. Siqueira, Rodrigo Braz, Simone Tomita, Valter Oliveira, and Leila D. Martins
Geosci. Model Dev., 10, 189–222, https://doi.org/10.5194/gmd-10-189-2017, https://doi.org/10.5194/gmd-10-189-2017, 2017
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We present a new version of the Brazilian developments on the Regional Atmospheric Modeling System (BRAMS) where different previous versions for weather, chemistry, and the carbon cycle were unified in a single harmonized software system. This version also has a new set of state-of-the-art physical parametrizations and higher computational parallel and memory usage efficiency. BRAMS has been applied for research and operational weather and air quality forecasting, largely in South America.
Richard Wehr and Scott R. Saleska
Biogeosciences, 14, 17–29, https://doi.org/10.5194/bg-14-17-2017, https://doi.org/10.5194/bg-14-17-2017, 2017
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In 1969, Derek York published a highly general solution to the common problem of how to fit a straight line to points measured with error in both x and y. Unfortunately York's solution is almost unknown outside the geophysical literature, and new studies wrestle with the problem each year. We introduce York's solution and demonstrate it using an example from biogeochemistry: the isotopic mixing line. By Monte Carlo simulation, we show that York’s solution is superior to all popular fit methods.
Kirsti Ashworth, Serena H. Chung, Karena A. McKinney, Ying Liu, J. William Munger, Scot T. Martin, and Allison L. Steiner
Atmos. Chem. Phys., 16, 15461–15484, https://doi.org/10.5194/acp-16-15461-2016, https://doi.org/10.5194/acp-16-15461-2016, 2016
Kaniska Mallick, Ivonne Trebs, Eva Boegh, Laura Giustarini, Martin Schlerf, Darren T. Drewry, Lucien Hoffmann, Celso von Randow, Bart Kruijt, Alessandro Araùjo, Scott Saleska, James R. Ehleringer, Tomas F. Domingues, Jean Pierre H. B. Ometto, Antonio D. Nobre, Osvaldo Luiz Leal de Moraes, Matthew Hayek, J. William Munger, and Steven C. Wofsy
Hydrol. Earth Syst. Sci., 20, 4237–4264, https://doi.org/10.5194/hess-20-4237-2016, https://doi.org/10.5194/hess-20-4237-2016, 2016
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While quantifying vegetation water use over multiple plant function types in the Amazon Basin, we found substantial biophysical control during drought as well as a water-stress period and dominant climatic control during a water surplus period. This work has direct implication in understanding the resilience of the Amazon forest in the spectre of frequent drought menace as well as the role of drought-induced plant biophysical functioning in modulating the water-carbon coupling in this ecosystem.
Natalia Restrepo-Coupe, Alfredo Huete, Kevin Davies, James Cleverly, Jason Beringer, Derek Eamus, Eva van Gorsel, Lindsay B. Hutley, and Wayne S. Meyer
Biogeosciences, 13, 5587–5608, https://doi.org/10.5194/bg-13-5587-2016, https://doi.org/10.5194/bg-13-5587-2016, 2016
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We re-evaluated the connection between satellite greenness products and C-flux tower data in four Australian ecosystems. We identify key mechanisms driving the carbon cycle, and provide an ecological basis for the interpretation of vegetation indices. We found relationships between productivity and greenness to be non-significant in meteorologically driven evergreen forests and sites where climate and vegetation phenology were asynchronous, and highly correlated in phenology-driven ecosystems.
Caitlin E. Moore, Tim Brown, Trevor F. Keenan, Remko A. Duursma, Albert I. J. M. van Dijk, Jason Beringer, Darius Culvenor, Bradley Evans, Alfredo Huete, Lindsay B. Hutley, Stefan Maier, Natalia Restrepo-Coupe, Oliver Sonnentag, Alison Specht, Jeffrey R. Taylor, Eva van Gorsel, and Michael J. Liddell
Biogeosciences, 13, 5085–5102, https://doi.org/10.5194/bg-13-5085-2016, https://doi.org/10.5194/bg-13-5085-2016, 2016
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Australian vegetation phenology is highly variable due to the diversity of ecosystems on the continent. We explore continental-scale variability using satellite remote sensing by broadly classifying areas as seasonal, non-seasonal, or irregularly seasonal. We also examine ecosystem-scale phenology using phenocams and show that some broadly non-seasonal ecosystems do display phenological variability. Overall, phenocams are useful for understanding ecosystem-scale Australian vegetation phenology.
Jacob K. Hedelius, Camille Viatte, Debra Wunch, Coleen M. Roehl, Geoffrey C. Toon, Jia Chen, Taylor Jones, Steven C. Wofsy, Jonathan E. Franklin, Harrison Parker, Manvendra K. Dubey, and Paul O. Wennberg
Atmos. Meas. Tech., 9, 3527–3546, https://doi.org/10.5194/amt-9-3527-2016, https://doi.org/10.5194/amt-9-3527-2016, 2016
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Portable FTS instruments with lower resolution are being used to measure gases (including CO2, CH4, CO, and N2O) in the atmosphere. We compared measurements from four of these instruments for a few weeks, and with one for nearly a year to a higher resolution TCCON standard. We also performed tests to assess performance under different atmospheric and instrumental conditions. We noted consistent offsets in the short-term (~1 month); more research is still needed to assess precision longer term.
Jia Chen, Camille Viatte, Jacob K. Hedelius, Taylor Jones, Jonathan E. Franklin, Harrison Parker, Elaine W. Gottlieb, Paul O. Wennberg, Manvendra K. Dubey, and Steven C. Wofsy
Atmos. Chem. Phys., 16, 8479–8498, https://doi.org/10.5194/acp-16-8479-2016, https://doi.org/10.5194/acp-16-8479-2016, 2016
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This paper helps establish a range of new applications for compact solar-tracking Fourier transform spectrometers, and shows the capability of differential column measurements for determining urban emissions. By accurately measuring the differences in the integrated column amounts of carbon dioxide and methane across local and regional sources in California, we directly observe the mass loading of the atmosphere due to the influence of emissions in the intervening locale.
Christian Frankenberg, Susan S. Kulawik, Steven C. Wofsy, Frédéric Chevallier, Bruce Daube, Eric A. Kort, Christopher O'Dell, Edward T. Olsen, and Gregory Osterman
Atmos. Chem. Phys., 16, 7867–7878, https://doi.org/10.5194/acp-16-7867-2016, https://doi.org/10.5194/acp-16-7867-2016, 2016
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We use observations from the HIAPER Pole-to-Pole Observations (HIPPO) flights from January 2009 through September 2011 to validate CO2 measurements from satellites (GOSAT, TES, AIRS) and atmospheric inversion models (CarbonTracker CT2013B, MACC v13r1).
Anna Karion, Colm Sweeney, John B. Miller, Arlyn E. Andrews, Roisin Commane, Steven Dinardo, John M. Henderson, Jacob Lindaas, John C. Lin, Kristina A. Luus, Tim Newberger, Pieter Tans, Steven C. Wofsy, Sonja Wolter, and Charles E. Miller
Atmos. Chem. Phys., 16, 5383–5398, https://doi.org/10.5194/acp-16-5383-2016, https://doi.org/10.5194/acp-16-5383-2016, 2016
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Northern high-latitude carbon sources and sinks, including those resulting from degrading permafrost, are thought to be sensitive to the rapidly warming climate. Here we use carbon dioxide and methane measurements from a tower near Fairbanks AK to investigate regional Alaskan fluxes of CO2 and CH4 for 2012–2014.
Fabien H. Wagner, Bruno Hérault, Damien Bonal, Clément Stahl, Liana O. Anderson, Timothy R. Baker, Gabriel Sebastian Becker, Hans Beeckman, Danilo Boanerges Souza, Paulo Cesar Botosso, David M. J. S. Bowman, Achim Bräuning, Benjamin Brede, Foster Irving Brown, Jesus Julio Camarero, Plínio Barbosa Camargo, Fernanda C. G. Cardoso, Fabrício Alvim Carvalho, Wendeson Castro, Rubens Koloski Chagas, Jérome Chave, Emmanuel N. Chidumayo, Deborah A. Clark, Flavia Regina Capellotto Costa, Camille Couralet, Paulo Henrique da Silva Mauricio, Helmut Dalitz, Vinicius Resende de Castro, Jaçanan Eloisa de Freitas Milani, Edilson Consuelo de Oliveira, Luciano de Souza Arruda, Jean-Louis Devineau, David M. Drew, Oliver Dünisch, Giselda Durigan, Elisha Elifuraha, Marcio Fedele, Ligia Ferreira Fedele, Afonso Figueiredo Filho, César Augusto Guimarães Finger, Augusto César Franco, João Lima Freitas Júnior, Franklin Galvão, Aster Gebrekirstos, Robert Gliniars, Paulo Maurício Lima de Alencastro Graça, Anthony D. Griffiths, James Grogan, Kaiyu Guan, Jürgen Homeier, Maria Raquel Kanieski, Lip Khoon Kho, Jennifer Koenig, Sintia Valerio Kohler, Julia Krepkowski, José Pires Lemos-Filho, Diana Lieberman, Milton Eugene Lieberman, Claudio Sergio Lisi, Tomaz Longhi Santos, José Luis López Ayala, Eduardo Eijji Maeda, Yadvinder Malhi, Vivian R. B. Maria, Marcia C. M. Marques, Renato Marques, Hector Maza Chamba, Lawrence Mbwambo, Karina Liana Lisboa Melgaço, Hooz Angela Mendivelso, Brett P. Murphy, Joseph J. O'Brien, Steven F. Oberbauer, Naoki Okada, Raphaël Pélissier, Lynda D. Prior, Fidel Alejandro Roig, Michael Ross, Davi Rodrigo Rossatto, Vivien Rossi, Lucy Rowland, Ervan Rutishauser, Hellen Santana, Mark Schulze, Diogo Selhorst, Williamar Rodrigues Silva, Marcos Silveira, Susanne Spannl, Michael D. Swaine, José Julio Toledo, Marcos Miranda Toledo, Marisol Toledo, Takeshi Toma, Mario Tomazello Filho, Juan Ignacio Valdez Hernández, Jan Verbesselt, Simone Aparecida Vieira, Grégoire Vincent, Carolina Volkmer de Castilho, Franziska Volland, Martin Worbes, Magda Lea Bolzan Zanon, and Luiz E. O. C. Aragão
Biogeosciences, 13, 2537–2562, https://doi.org/10.5194/bg-13-2537-2016, https://doi.org/10.5194/bg-13-2537-2016, 2016
Douglas C. Morton, Jérémy Rubio, Bruce D. Cook, Jean-Philippe Gastellu-Etchegorry, Marcos Longo, Hyeungu Choi, Maria Hunter, and Michael Keller
Biogeosciences, 13, 2195–2206, https://doi.org/10.5194/bg-13-2195-2016, https://doi.org/10.5194/bg-13-2195-2016, 2016
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Seasonal dynamics of tropical forest productivity remain an important source of uncertainty in assessments of the land carbon sink. This study confirms the potential for canopy structure and illumination geometry to alter the seasonal availability of light for canopy photosynthesis without changes in canopy composition. Our results point to the need for 3-D forest structure in ecosystem models to account the impact of changing illumination geometry on tropical forest productivity.
Leandro T. dos Santos, Daniel Magnabosco Marra, Susan Trumbore, Plínio B. de Camargo, Robinson I. Negrón-Juárez, Adriano J. N. Lima, Gabriel H. P. M. Ribeiro, Joaquim dos Santos, and Niro Higuchi
Biogeosciences, 13, 1299–1308, https://doi.org/10.5194/bg-13-1299-2016, https://doi.org/10.5194/bg-13-1299-2016, 2016
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In the Amazon forest, wind disturbances can create canopy gaps of many hundreds of hectares. We show that inputs of plant litter associated with large windthrows cause a short-term increase in soil carbon stock. The degree of increase is related to soil clay content and tree mortality intensity. The higher carbon content and potentially higher nutrient availability in soils from areas recovering from windthrows may favor forest regrowth and increase vegetation resilience.
A. M. Womack, P. E. Artaxo, F. Y. Ishida, R. C. Mueller, S. R. Saleska, K. T. Wiedemann, B. J. M. Bohannan, and J. L. Green
Biogeosciences, 12, 6337–6349, https://doi.org/10.5194/bg-12-6337-2015, https://doi.org/10.5194/bg-12-6337-2015, 2015
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Fungi in the atmosphere can affect precipitation by nucleating the formation of clouds and ice. This process is important over the Amazon rainforest where precipitation is limited by the types and amount of airborne particles. We found that the total and metabolically active fungi communities were dominated by different taxonomic groups, and the active community unexpectedly contained many lichen fungi, which are effective at nucleating ice.
L. Molina, G. Broquet, P. Imbach, F. Chevallier, B. Poulter, D. Bonal, B. Burban, M. Ramonet, L. V. Gatti, S. C. Wofsy, J. W. Munger, E. Dlugokencky, and P. Ciais
Atmos. Chem. Phys., 15, 8423–8438, https://doi.org/10.5194/acp-15-8423-2015, https://doi.org/10.5194/acp-15-8423-2015, 2015
Z. Y. Wu, L. Zhang, X. M. Wang, and J. W. Munger
Atmos. Chem. Phys., 15, 7487–7496, https://doi.org/10.5194/acp-15-7487-2015, https://doi.org/10.5194/acp-15-7487-2015, 2015
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In this study, we have developed a modified micrometeorological gradient method (MGM), although based on existing micrometeorological theory, to estimate O3 dry deposition fluxes over a forest canopy using concentration gradients between a level above and a level below the canopy top. The new method provides an alternative approach in monitoring/estimating long-term deposition fluxes of similar pollutants over tall canopies and is expected to be useful for the scientific community.
G. Wohlfahrt, C. Amelynck, C. Ammann, A. Arneth, I. Bamberger, A. H. Goldstein, L. Gu, A. Guenther, A. Hansel, B. Heinesch, T. Holst, L. Hörtnagl, T. Karl, Q. Laffineur, A. Neftel, K. McKinney, J. W. Munger, S. G. Pallardy, G. W. Schade, R. Seco, and N. Schoon
Atmos. Chem. Phys., 15, 7413–7427, https://doi.org/10.5194/acp-15-7413-2015, https://doi.org/10.5194/acp-15-7413-2015, 2015
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Methanol is the second most abundant volatile organic compound in the troposphere and plays a significant role in atmospheric chemistry. While there is consensus about the dominant role of plants as the major source and the reaction with OH as the major sink, global methanol budgets diverge considerably in terms of source/sink estimates. Here we present micrometeorological methanol flux data from eight sites in order to provide a first cross-site synthesis of the terrestrial methanol exchange.
L. Rowland, A. Harper, B. O. Christoffersen, D. R. Galbraith, H. M. A. Imbuzeiro, T. L. Powell, C. Doughty, N. M. Levine, Y. Malhi, S. R. Saleska, P. R. Moorcroft, P. Meir, and M. Williams
Geosci. Model Dev., 8, 1097–1110, https://doi.org/10.5194/gmd-8-1097-2015, https://doi.org/10.5194/gmd-8-1097-2015, 2015
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This study evaluates the capability of five vegetation models to simulate the response of forest productivity to changes in temperature and drought, using data collected from an Amazonian forest. This study concludes that model consistencies in the responses of net canopy carbon production to temperature and precipitation change were the result of inconsistently modelled leaf-scale process responses and substantial variation in modelled leaf area responses.
S. M. Miller, M. N. Hayek, A. E. Andrews, I. Fung, and J. Liu
Atmos. Chem. Phys., 15, 2903–2914, https://doi.org/10.5194/acp-15-2903-2015, https://doi.org/10.5194/acp-15-2903-2015, 2015
M. M. Bela, K. M. Longo, S. R. Freitas, D. S. Moreira, V. Beck, S. C. Wofsy, C. Gerbig, K. Wiedemann, M. O. Andreae, and P. Artaxo
Atmos. Chem. Phys., 15, 757–782, https://doi.org/10.5194/acp-15-757-2015, https://doi.org/10.5194/acp-15-757-2015, 2015
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In the Amazon Basin, gases that lead to the formation of ozone (O3), an air pollutant and greenhouse gas, are emitted from fire, urban and biogenic sources. This study presents the first basin wide aircraft measurements of O3 during the dry-to-wet and wet-to-dry transition seasons, which show extremely low values above undisturbed forest and increases from fires. This work also demonstrates the capabilities and limitations of regional atmospheric chemistry models in representing O3 in Amazonia.
R. G. Knox, M. Longo, A. L. S. Swann, K. Zhang, N. M. Levine, P. R. Moorcroft, and R. L. Bras
Hydrol. Earth Syst. Sci., 19, 241–273, https://doi.org/10.5194/hess-19-241-2015, https://doi.org/10.5194/hess-19-241-2015, 2015
A. I. Gevaert, A. J. Teuling, R. Uijlenhoet, S. B. DeLong, T. E. Huxman, L. A. Pangle, D. D. Breshears, J. Chorover, J. D. Pelletier, S. R. Saleska, X. Zeng, and P. A. Troch
Hydrol. Earth Syst. Sci., 18, 3681–3692, https://doi.org/10.5194/hess-18-3681-2014, https://doi.org/10.5194/hess-18-3681-2014, 2014
L. K. Meredith, R. Commane, J. W. Munger, A. Dunn, J. Tang, S. C. Wofsy, and R. G. Prinn
Atmos. Meas. Tech., 7, 2787–2805, https://doi.org/10.5194/amt-7-2787-2014, https://doi.org/10.5194/amt-7-2787-2014, 2014
A. E. Andrews, J. D. Kofler, M. E. Trudeau, J. C. Williams, D. H. Neff, K. A. Masarie, D. Y. Chao, D. R. Kitzis, P. C. Novelli, C. L. Zhao, E. J. Dlugokencky, P. M. Lang, M. J. Crotwell, M. L. Fischer, M. J. Parker, J. T. Lee, D. D. Baumann, A. R. Desai, C. O. Stanier, S. F. J. De Wekker, D. E. Wolfe, J. W. Munger, and P. P. Tans
Atmos. Meas. Tech., 7, 647–687, https://doi.org/10.5194/amt-7-647-2014, https://doi.org/10.5194/amt-7-647-2014, 2014
R. G. Knox, M. Longo, A. L. S. Swann, K. Zhang, N. M. Levine, P. R. Moorcroft, and R. L. Bras
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-10-15295-2013, https://doi.org/10.5194/hessd-10-15295-2013, 2013
Preprint withdrawn
P. C. Stoy, M. C. Dietze, A. D. Richardson, R. Vargas, A. G. Barr, R. S. Anderson, M. A. Arain, I. T. Baker, T. A. Black, J. M. Chen, R. B. Cook, C. M. Gough, R. F. Grant, D. Y. Hollinger, R. C. Izaurralde, C. J. Kucharik, P. Lafleur, B. E. Law, S. Liu, E. Lokupitiya, Y. Luo, J. W. Munger, C. Peng, B. Poulter, D. T. Price, D. M. Ricciuto, W. J. Riley, A. K. Sahoo, K. Schaefer, C. R. Schwalm, H. Tian, H. Verbeeck, and E. Weng
Biogeosciences, 10, 6893–6909, https://doi.org/10.5194/bg-10-6893-2013, https://doi.org/10.5194/bg-10-6893-2013, 2013
L. V. Rizzo, P. Artaxo, T. Müller, A. Wiedensohler, M. Paixão, G. G. Cirino, A. Arana, E. Swietlicki, P. Roldin, E. O. Fors, K. T. Wiedemann, L. S. M. Leal, and M. Kulmala
Atmos. Chem. Phys., 13, 2391–2413, https://doi.org/10.5194/acp-13-2391-2013, https://doi.org/10.5194/acp-13-2391-2013, 2013
Related subject area
Biogeochemistry: Air - Land Exchange
Using automated machine learning for the upscaling of gross primary productivity
Interpretability of negative latent heat fluxes from eddy covariance measurements in dry conditions
Forest-floor respiration, N2O fluxes, and CH4 fluxes in a subalpine spruce forest: drivers and annual budgets
Compound soil and atmospheric drought events and CO2 fluxes of a mixed deciduous forest: Occurrence, impact, and temporal contribution of main drivers
Enhanced net CO2 exchange of a semideciduous forest in the southern Amazon due to diffuse radiation from biomass burning
Observational relationships between ammonia, carbon dioxide and water vapor under a wide range of meteorological and turbulent conditions: RITA-2021 campaign
Monitoring cropland daily carbon dioxide exchange at field scales with Sentinel-2 satellite imagery
High interspecific variability indicates pollen ice nucleators are incidental
Environmental controls of winter soil carbon dioxide fluxes in boreal and tundra environments
Origin of secondary fatty alcohols in atmospheric aerosols in a cool–temperate forest based on their mass size distributions
Sap flow and leaf gas exchange response to a drought and heatwave in urban green spaces in a Nordic city
Changes in biogenic volatile organic compound emissions in response to the El Niño–Southern Oscillation
The importance of plant-water stress for predictions of ground-level ozone in a warm world
Rethinking the deployment of static chambers for CO2 flux measurement in dry desert soils
Lichen species across Alaska produce highly active and stable ice nucleators
A differentiable, physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Snow–vegetation–atmosphere interactions in alpine tundra
Synergy between TROPOMI sun-induced chlorophyll fluorescence and MODIS spectral reflectance for understanding the dynamics of gross primary productivity at Integrated Carbon Observatory System (ICOS) ecosystem flux sites
Atmospheric deposition of reactive nitrogen to a deciduous forest in the southern Appalachian Mountains
Tropical cyclones facilitate recovery of forest leaf area from dry spells in East Asia
Minor contributions of daytime monoterpenes are major contributors to atmospheric reactivity
Using atmospheric observations to quantify annual biogenic carbon dioxide fluxes on the Alaska North Slope
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part II: Modeling annual budgets
Growth and actual leaf temperature modulate CO2 responsiveness of monoterpene emissions from holm oak in opposite ways
Multi-year observations reveal a larger than expected autumn respiration signal across northeast Eurasia
Reviews and syntheses: VOC emissions from soil cover in boreal and temperate natural ecosystems of the Northern Hemisphere
Internal tree cycling and atmospheric archiving of mercury: examination with concentration and stable isotope analyses
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
CO2 and CH4 exchanges between moist moss tundra and atmosphere on Kapp Linné, Svalbard
Recent extreme drought events in the Amazon rainforest: assessment of different precipitation and evapotranspiration datasets and drought indicators
Variability and uncertainty in flux-site-scale net ecosystem exchange simulations based on machine learning and remote sensing: a systematic evaluation
Update of a biogeochemical model with process-based algorithms to predict ammonia volatilization from fertilized cultivated uplands and rice paddy fields
Massive warming-induced carbon loss from subalpine grassland soils in an altitudinal transplantation experiment
Climatic variation drives loss and restructuring of carbon and nitrogen in boreal forest wildfire
Gaps in network infrastructure limit our understanding of biogenic methane emissions for the United States
Changes of the aerodynamic characteristics of a flux site after an extensive windthrow
Carbon sequestration potential of street tree plantings in Helsinki
Technical note: Incorporating expert domain knowledge into causal structure discovery workflows
Sensitivity of biomass burning emissions estimates to land surface information
A convolutional neural network for spatial downscaling of satellite-based solar-induced chlorophyll fluorescence (SIFnet)
Influence of plant ecophysiology on ozone dry deposition: comparing between multiplicative and photosynthesis-based dry deposition schemes and their responses to rising CO2 level
Modeling the interinfluence of fertilizer-induced NH3 emission, nitrogen deposition, and aerosol radiative effects using modified CESM2
Physiological and climate controls on foliar mercury uptake by European tree species
Radiation, soil water content, and temperature effects on carbon cycling in an alpine swamp meadow of the northeastern Qinghai–Tibetan Plateau
Representativeness assessment of the pan-Arctic eddy covariance site network and optimized future enhancements
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part I: Measuring temporal dynamics
Ideas and perspectives: Emerging contours of a dynamic exogenous kerogen cycle
Versatile soil gas concentration and isotope monitoring: optimization and integration of novel soil gas probes with online trace gas detection
On the impact of canopy model complexity on simulated carbon, water, and solar-induced chlorophyll fluorescence fluxes
Mercury accumulation in leaves of different plant types – the significance of tissue age and specific leaf area
Max Gaber, Yanghui Kang, Guy Schurgers, and Trevor Keenan
Biogeosciences, 21, 2447–2472, https://doi.org/10.5194/bg-21-2447-2024, https://doi.org/10.5194/bg-21-2447-2024, 2024
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Gross primary productivity (GPP) describes the photosynthetic carbon assimilation, which plays a vital role in the carbon cycle. We can measure GPP locally, but producing larger and continuous estimates is challenging. Here, we present an approach to extrapolate GPP to a global scale using satellite imagery and automated machine learning. We benchmark different models and predictor variables and achieve an estimate that can capture 75 % of the variation in GPP.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek Sebastian El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
Biogeosciences, 21, 2051–2085, https://doi.org/10.5194/bg-21-2051-2024, https://doi.org/10.5194/bg-21-2051-2024, 2024
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Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
Luana Krebs, Susanne Burri, Iris Feigenwinter, Mana Gharun, Philip Meier, and Nina Buchmann
Biogeosciences, 21, 2005–2028, https://doi.org/10.5194/bg-21-2005-2024, https://doi.org/10.5194/bg-21-2005-2024, 2024
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This study explores year-round forest-floor greenhouse gas (GHG) fluxes in a Swiss spruce forest. Soil temperature and snow depth affected forest-floor respiration, while CH4 uptake was linked to snow cover. Negligible N2O fluxes were observed. In 2022, a warm year, CO2 emissions notably increased. The study suggests rising forest-floor GHG emissions due to climate change, impacting carbon sink behavior. Thus, for future forest management, continuous year-round GHG flux measurements are crucial.
Liliana Scapucci, Ankit Shekhar, Sergio Aranda-Barranco, Anastasiia Bolshakova, Lukas Hörtnagl, Mana Gharun, and Nina Buchmann
EGUsphere, https://doi.org/10.5194/egusphere-2024-459, https://doi.org/10.5194/egusphere-2024-459, 2024
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Forests face increased exposure to compound soil and atmospheric drought (CSAD) events with global warming. The study examined CO2 flux responses during CSAD events in a forest over 18 years. Results showed reduced net ecosystem productivity and forest floor respiration during CSAD events, with soil and atmospheric drought as main drivers. We highlighted the importance of pre-conditions, duration and timing of CSAD events to understand their impacts on CO2 fluxes of forest ecosystems.
Simone Rodrigues, Glauber Cirino, Demerval Moreira, Andrea Pozzer, Rafael Palácios, Sung-Ching Lee, Breno Imbiriba, José Nogueira, Maria Isabel Vitorino, and George Vourlitis
Biogeosciences, 21, 843–868, https://doi.org/10.5194/bg-21-843-2024, https://doi.org/10.5194/bg-21-843-2024, 2024
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The radiative effects of atmospheric particles are still unknown for a wide variety of species and types of vegetation present in Amazonian biomes. We examined the effects of aerosols on solar radiation and their impacts on photosynthesis in an area of semideciduous forest in the southern Amazon Basin. Under highly smoky-sky conditions, our results show substantial photosynthetic interruption (20–70 %), attributed specifically to the decrease in solar radiation and leaf canopy temperature.
Ruben B. Schulte, Jordi Vilà-Guerau de Arellano, Susanna Rutledge-Jonker, Shelley van der Graaf, Jun Zhang, and Margreet C. van Zanten
Biogeosciences, 21, 557–574, https://doi.org/10.5194/bg-21-557-2024, https://doi.org/10.5194/bg-21-557-2024, 2024
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We analyzed measurements with the aim of finding relations between the surface atmosphere exchange of NH3 and the CO2 uptake and transpiration by vegetation. We found a high correlation of daytime NH3 emissions with both latent heat flux and photosynthetically active radiation. Very few simultaneous measurements of NH3, CO2 fluxes and meteorological variables exist at sub-diurnal timescales. This study paves the way to finding more robust relations between the NH3 exchange flux and CO2 uptake.
Pia Gottschalk, Aram Kalhori, Zhan Li, Christian Wille, and Torsten Sachs
EGUsphere, https://doi.org/10.5194/egusphere-2023-2988, https://doi.org/10.5194/egusphere-2023-2988, 2024
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For improving the accuracy of spatial carbon exchange estimates we show how a simple linear model for net ecosystem exchange (NEE) and gross primary productivity (GPP) can be used for upscaling CO2-exchange for agricultural fields. The models are solely driven by Sentinel-2 derived vegetation indices (VI). Evaluations show that different VIs have variable powers to estimate NEE and GPP of crops in different years. The overall performance though is as good as results from complex crop models.
Nina L. H. Kinney, Charles A. Hepburn, Matthew I. Gibson, Daniel Ballesteros, and Thomas F. Whale
EGUsphere, https://doi.org/10.5194/egusphere-2023-2705, https://doi.org/10.5194/egusphere-2023-2705, 2024
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Molecules released from plant pollen induce the formation of ice from supercooled water at temperatures warm enough to suggest an underlying function for this activity. In this study we show that ice nucleators are ubiquitous in pollen. We suggest the molecules responsible fulfil some unrelated biological function and nucleate ice incidentally. The ubiquity of ice nucleating molecules in pollen and particularly active examples reveal a greater potential for pollen to impact weather and climate.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Carolina Voigt, Nick Rutter, Paul Mann, Jean-Daniel Sylvain, and Alexandre Roy
Biogeosciences, 20, 5087–5108, https://doi.org/10.5194/bg-20-5087-2023, https://doi.org/10.5194/bg-20-5087-2023, 2023
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We present an analysis of soil CO2 emissions in boreal and tundra regions during the non-growing season. We show that when the soil is completely frozen, soil temperature is the main control on CO2 emissions. When the soil is around the freezing point, with a mix of liquid water and ice, the liquid water content is the main control on CO2 emissions. This study highlights that the vegetation–snow–soil interactions must be considered to understand soil CO2 emissions during the non-growing season.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
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Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Joyson Ahongshangbam, Liisa Kulmala, Jesse Soininen, Yasmin Frühauf, Esko Karvinen, Yann Salmon, Anna Lintunen, Anni Karvonen, and Leena Järvi
Biogeosciences, 20, 4455–4475, https://doi.org/10.5194/bg-20-4455-2023, https://doi.org/10.5194/bg-20-4455-2023, 2023
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Urban vegetation is important for removing urban CO2 emissions and cooling. We studied the response of urban trees' functions (photosynthesis and transpiration) to a heatwave and drought at four urban green areas in the city of Helsinki. We found that tree water use was increased during heatwave and drought periods, but there was no change in the photosynthesis rates. The heat and drought conditions were severe at the local scale but were not excessive enough to restrict urban trees' functions.
Ryan Vella, Andrea Pozzer, Matthew Forrest, Jos Lelieveld, Thomas Hickler, and Holger Tost
Biogeosciences, 20, 4391–4412, https://doi.org/10.5194/bg-20-4391-2023, https://doi.org/10.5194/bg-20-4391-2023, 2023
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We investigated the effect of the El Niño–Southern Oscillation (ENSO) on biogenic volatile organic compound (BVOC) emissions from plants. ENSO events can cause a significant increase in these emissions, which have a long-term impact on the Earth's atmosphere. Persistent ENSO conditions can cause long-term changes in vegetation, resulting in even higher BVOC emissions. We link ENSO-induced emission anomalies with driving atmospheric and vegetational variables.
Tamara Emmerichs, Yen-Sen Lu, and Domenico Taraborrelli
EGUsphere, https://doi.org/10.5194/egusphere-2023-2306, https://doi.org/10.5194/egusphere-2023-2306, 2023
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We assess the representation of the plant' response to surface water in a global atmospheric chemistry model. This sensitivity is crucial for the return of precipitation back to the atmosphere and thus significantly impacts the representation of weather as well as air quality. The newly implemented response function reduces this process towards a better comparison with satellite observations. This yields a higher intensity of unusual warm periods and a higher production of air pollutants.
Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
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The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
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Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
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Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
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We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
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This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
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Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
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Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
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Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
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As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
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For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
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We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
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Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
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Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
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Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
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We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
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A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
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The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
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Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
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This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
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To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
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This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
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This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
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We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
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We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
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Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
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Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Junqi Wei, Xiaoyan Li, Lei Liu, Torben Røjle Christensen, Zhiyun Jiang, Yujun Ma, Xiuchen Wu, Hongyun Yao, and Efrén López-Blanco
Biogeosciences, 19, 861–875, https://doi.org/10.5194/bg-19-861-2022, https://doi.org/10.5194/bg-19-861-2022, 2022
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Although water availability has been linked to the response of ecosystem carbon (C) sink–source to climate warming, the mechanisms by which C uptake responds to soil moisture remain unclear. We explored how soil water and other environmental drivers modulate net C uptake in an alpine swamp meadow. Results reveal that nearly saturated soil conditions during warm seasons can help to maintain lower ecosystem respiration and therefore enhance the C sequestration capacity in this alpine swamp meadow.
Martijn M. T. A. Pallandt, Jitendra Kumar, Marguerite Mauritz, Edward A. G. Schuur, Anna-Maria Virkkala, Gerardo Celis, Forrest M. Hoffman, and Mathias Göckede
Biogeosciences, 19, 559–583, https://doi.org/10.5194/bg-19-559-2022, https://doi.org/10.5194/bg-19-559-2022, 2022
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Thawing of Arctic permafrost soils could trigger the release of vast amounts of carbon to the atmosphere, thus enhancing climate change. Our study investigated how well the current network of eddy covariance sites to monitor greenhouse gas exchange at local scales captures pan-Arctic flux patterns. We identified large coverage gaps, e.g., in Siberia, but also demonstrated that a targeted addition of relatively few sites can significantly improve network performance.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, and Christian Brümmer
Biogeosciences, 19, 389–413, https://doi.org/10.5194/bg-19-389-2022, https://doi.org/10.5194/bg-19-389-2022, 2022
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Fluxes of total reactive nitrogen (∑Nr) over a low polluted forest were analyzed with regard to their temporal dynamics. Mostly deposition was observed with median fluxes ranging from −15 to −5 ng N m−2 s−1, corresponding to a range of deposition velocities from 0.2 to 0.5 cm s−1. While seasonally changing contributions of NH3 and NOx to the ∑Nr signal were found, we estimate an annual total N deposition (dry+wet) of 12.2 and 10.9 kg N ha−1 a−1 in the 2 years of observation.
Thomas M. Blattmann
Biogeosciences, 19, 359–373, https://doi.org/10.5194/bg-19-359-2022, https://doi.org/10.5194/bg-19-359-2022, 2022
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This work enunciates the possibility of kerogen oxidation contributing to atmospheric CO2 increase in the wake of glacial episodes. This hypothesis is substantiated by several lines of independent evidence synthesized in this contribution. The author hypothesizes that the deglaciation of kerogen-rich lithologies in western Canada contributed to the characteristic deglacial increase in atmospheric CO2.
Juliana Gil-Loaiza, Joseph R. Roscioli, Joanne H. Shorter, Till H. M. Volkmann, Wei-Ren Ng, Jordan E. Krechmer, and Laura K. Meredith
Biogeosciences, 19, 165–185, https://doi.org/10.5194/bg-19-165-2022, https://doi.org/10.5194/bg-19-165-2022, 2022
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We evaluated a new diffusive soil probe integrated with high-resolution gas analyzers to measure soil gases in real time at a centimeter scale. Using columns with simple silica and soil, we captured changes in carbon dioxide (CO2), volatile organic compounds (VOCs), and nitrous oxide (N2O) with its isotopes to distinguish potential nutrient sources and microbial metabolism. This approach will advance the use of soil gases as important signals to understand and monitor soil fertility and health.
Yujie Wang and Christian Frankenberg
Biogeosciences, 19, 29–45, https://doi.org/10.5194/bg-19-29-2022, https://doi.org/10.5194/bg-19-29-2022, 2022
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Modeling vegetation canopy is important in predicting whether the land remains a carbon sink to mitigate climate change in the near future. Vegetation canopy model complexity, however, impacts the model-predicted carbon and water fluxes as well as canopy fluorescence, even if the same suite of model inputs is used. Given the biases caused by canopy model complexity, we recommend not misusing parameters inverted using different models or assumptions.
Håkan Pleijel, Jenny Klingberg, Michelle Nerentorp, Malin C. Broberg, Brigitte Nyirambangutse, John Munthe, and Göran Wallin
Biogeosciences, 18, 6313–6328, https://doi.org/10.5194/bg-18-6313-2021, https://doi.org/10.5194/bg-18-6313-2021, 2021
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Mercury is a problematic metal in the environment. It is crucial to understand the Hg circulation in ecosystems. We explored the mercury concentration in foliage from a diverse set of plants, locations and sampling periods to study the accumulation of Hg in leaves–needles over time. Mercury was always higher in older tissue: in broadleaved trees, conifers and wheat. Specific leaf area, the leaf area per unit leaf mass, turned out to be critical for Hg accumulation in leaves–needles.
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Short summary
We investigated the roles that weather and forest disturbances like drought play in shaping changes in ecosystem photosynthesis and carbon exchange in an Amazon forest. We discovered that weather largely influenced differences between years, but a prior drought, which occurred 3 years before measurements started, likely hampered photosynthesis in the first year. This is the first atmospheric evidence that drought can have legacy impacts on Amazon forest photosynthesis.
We investigated the roles that weather and forest disturbances like drought play in shaping...
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