Articles | Volume 10, issue 9
https://doi.org/10.5194/bg-10-5889-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-10-5889-2013
© Author(s) 2013. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
06 Sep 2013
Research article |
| 06 Sep 2013
Isotopic constraints on the pre-industrial oceanic nitrogen budget
C. J. Somes
GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
A. Oschlies
GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
A. Schmittner
College of Earth, Ocean, and Atmospheric Sciences, Oregon State University, 104 CEOAS Admin Bldg., Corvallis, Oregon, 97331, USA
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In this paper, we evaluate the newest version of the University of Victoria Earth System Climate Model (UVic ESCM 2.10). Combining recent model developments as a joint effort, this version is to be used in the next phase of model intercomparison and climate change studies. The UVic ESCM 2.10 is capable of reproducing changes in historical temperature and carbon fluxes well. Additionally, the model is able to reproduce the three-dimensional distribution of many ocean tracers.
Sabine Mathesius, Julia Getzlaff, Heiner Dietze, Andreas Oschlies, and Markus Schartau
Earth Syst. Sci. Data, 12, 1775–1787, https://doi.org/10.5194/essd-12-1775-2020, https://doi.org/10.5194/essd-12-1775-2020, 2020
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Controlled manipulation of environmental conditions within large enclosures in the ocean, pelagic mesocosms, has become a standard method to explore responses of marine plankton communities to anthropogenic change. Among the challenges of interpreting mesocosm data is the often uncertain role of vertical mixing. This study introduces a mesocosm mixing model that is able to estimate vertical diffusivities and thus provides a tool for future mesocosm data analyses that account for mixing.
Iris Kriest, Paul Kähler, Wolfgang Koeve, Karin Kvale, Volkmar Sauerland, and Andreas Oschlies
Biogeosciences, 17, 3057–3082, https://doi.org/10.5194/bg-17-3057-2020, https://doi.org/10.5194/bg-17-3057-2020, 2020
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Constants of global biogeochemical ocean models are often tuned
by handto match observations of nutrients or oxygen. We investigate the effect of this tuning by optimising six constants of a global biogeochemical model, simulated in five different offline circulations. Optimal values for three constants adjust to distinct features of the circulation applied and can afterwards be swapped among the circulations, without losing too much of the model's fit to observed quantities.
Fabian Reith, Wolfgang Koeve, David P. Keller, Julia Getzlaff, and Andreas Oschlies
Earth Syst. Dynam., 10, 711–727, https://doi.org/10.5194/esd-10-711-2019, https://doi.org/10.5194/esd-10-711-2019, 2019
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This modeling study is the first one to look at the suitability and collateral effects of direct CO2 injection into the deep ocean as a means to bridge the gap between CO2 emissions and climate impacts of an intermediate CO2 emission scenario and a temperature target on a millennium timescale, such as the 1.5 °C climate target of the Paris Agreement.
Tronje P. Kemena, Angela Landolfi, Andreas Oschlies, Klaus Wallmann, and Andrew W. Dale
Earth Syst. Dynam., 10, 539–553, https://doi.org/10.5194/esd-10-539-2019, https://doi.org/10.5194/esd-10-539-2019, 2019
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Oceanic deoxygenation is driven by climate change in several areas of the global ocean. Measurements indicate that ocean volumes with very low oxygen levels expand, with consequences for marine organisms and fishery. We found climate-change-driven phosphorus (P) input in the ocean is hereby an important driver for deoxygenation on longer timescales with effects in the next millennia.
Daniela Niemeyer, Iris Kriest, and Andreas Oschlies
Biogeosciences, 16, 3095–3111, https://doi.org/10.5194/bg-16-3095-2019, https://doi.org/10.5194/bg-16-3095-2019, 2019
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Recent studies suggest spatial variations of the marine particle flux length scale. Using a global biogeochemical ocean model, we investigate whether changes in particle size and size-dependent sinking can explain this variation. We address uncertainties by varying aggregate properties and circulation. Both aspects have an impact on the representation of nutrients, oxygen and oxygen minimum zones. The formation and sinking of large aggregates in productive areas lead to deeper flux penetration.
Yonss Saranga José, Lothar Stramma, Sunke Schmidtko, and Andreas Oschlies
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-155, https://doi.org/10.5194/bg-2019-155, 2019
Revised manuscript accepted for BG
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In situ observations along the Peruvian and Chilean coasts have exhibited variability in the water column oxygen concentration. This variability, which is attributed to the El Niño Southern Oscillation (ENSO), might have implication on the vertical extension of the Eastern Tropical South Pacific (ETSP) oxygen minimum zone. Here using a coupled physical-biogeochemical model, we provide new insights into how ENSO variability affects the vertical extension of the oxygen-poor waters of the ETSP.
Olaf Duteil, Andreas Oschlies, and Claus W. Böning
Biogeosciences, 15, 7111–7126, https://doi.org/10.5194/bg-15-7111-2018, https://doi.org/10.5194/bg-15-7111-2018, 2018
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Oxygen-depleted regions of the Pacific Ocean are currently expanding, which is threatening marine habitats. Based on numerical simulations, we show that the decrease in the intensity of the trade winds and the subsequent slowdown of the oceanic currents lead to a reduction in oxygen supply. Our study suggests that the prevailing positive conditions of the Pacific Decadal Oscillation since 1975, a major source of natural variability, may explain a significant part of the current deoxygenation.
Marine Bretagnon, Aurélien Paulmier, Véronique Garçon, Boris Dewitte, Séréna Illig, Nathalie Leblond, Laurent Coppola, Fernando Campos, Federico Velazco, Christos Panagiotopoulos, Andreas Oschlies, J. Martin Hernandez-Ayon, Helmut Maske, Oscar Vergara, Ivonne Montes, Philippe Martinez, Edgardo Carrasco, Jacques Grelet, Olivier Desprez-De-Gesincourt, Christophe Maes, and Lionel Scouarnec
Biogeosciences, 15, 5093–5111, https://doi.org/10.5194/bg-15-5093-2018, https://doi.org/10.5194/bg-15-5093-2018, 2018
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In oxygen minimum zone, the fate of the organic matter is a key question as the low oxygen condition would preserve the OM and thus enhance the biological carbon pump while the high microbial activity would foster the remineralisation and the greenhouse gases emission. To investigate this paradigm, sediment traps were deployed off Peru. We pointed out the influence of the oxygenation as well as the organic matter quantity and quality on the carbon transfer efficiency in the oxygen minimum zone.
Volkmar Sauerland, Ulrike Löptien, Claudine Leonhard, Andreas Oschlies, and Anand Srivastav
Geosci. Model Dev., 11, 1181–1198, https://doi.org/10.5194/gmd-11-1181-2018, https://doi.org/10.5194/gmd-11-1181-2018, 2018
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We present a concept to prove that a parametric model is well calibrated, i.e., that changes of its free parameters cannot lead to a much better model–data misfit anymore. The intention is motivated by the fact that calibrating global biogeochemical ocean models is important for assessment and inter-model comparison but computationally expensive.
Nadine Mengis, David P. Keller, and Andreas Oschlies
Earth Syst. Dynam., 9, 15–31, https://doi.org/10.5194/esd-9-15-2018, https://doi.org/10.5194/esd-9-15-2018, 2018
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The Systematic Correlation Matrix Evaluation (SCoMaE) method applies statistical information to systematically select, transparent, nonredundant indicators for a comprehensive assessment of the Earth system state. We show that due to changing climate forcing, such as anthropogenic climate change, the ad hoc assessment indicators might need to be reevaluated. Within an iterative process, this method would allow us to select scientifically consistent and societally relevant assessment indicators.
Karin F. Kvale, Samar Khatiwala, Heiner Dietze, Iris Kriest, and Andreas Oschlies
Geosci. Model Dev., 10, 2425–2445, https://doi.org/10.5194/gmd-10-2425-2017, https://doi.org/10.5194/gmd-10-2425-2017, 2017
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Computer models of ocean biology and chemistry are becoming increasingly complex, and thus more expensive, to run. One solution is to approximate the behaviour of the ocean physics and store that information outside of the model. That
offlineinformation can then be used to calculate a steady-state solution from the model's biology and chemistry, without waiting for a traditional
onlineintegration to complete. We show this offline method reproduces online results and is 100 times faster.
James C. Orr, Raymond G. Najjar, Olivier Aumont, Laurent Bopp, John L. Bullister, Gokhan Danabasoglu, Scott C. Doney, John P. Dunne, Jean-Claude Dutay, Heather Graven, Stephen M. Griffies, Jasmin G. John, Fortunat Joos, Ingeborg Levin, Keith Lindsay, Richard J. Matear, Galen A. McKinley, Anne Mouchet, Andreas Oschlies, Anastasia Romanou, Reiner Schlitzer, Alessandro Tagliabue, Toste Tanhua, and Andrew Yool
Geosci. Model Dev., 10, 2169–2199, https://doi.org/10.5194/gmd-10-2169-2017, https://doi.org/10.5194/gmd-10-2169-2017, 2017
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The Ocean Model Intercomparison Project (OMIP) is a model comparison effort under Phase 6 of the Coupled Model Intercomparison Project (CMIP6). Its physical component is described elsewhere in this special issue. Here we describe its ocean biogeochemical component (OMIP-BGC), detailing simulation protocols and analysis diagnostics. Simulations focus on ocean carbon, other biogeochemical tracers, air-sea exchange of CO2 and related gases, and chemical tracers used to evaluate modeled circulation.
Daniela Niemeyer, Tronje P. Kemena, Katrin J. Meissner, and Andreas Oschlies
Earth Syst. Dynam., 8, 357–367, https://doi.org/10.5194/esd-8-357-2017, https://doi.org/10.5194/esd-8-357-2017, 2017
Markus Schartau, Philip Wallhead, John Hemmings, Ulrike Löptien, Iris Kriest, Shubham Krishna, Ben A. Ward, Thomas Slawig, and Andreas Oschlies
Biogeosciences, 14, 1647–1701, https://doi.org/10.5194/bg-14-1647-2017, https://doi.org/10.5194/bg-14-1647-2017, 2017
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Plankton models have become an integral part in marine ecosystem and biogeochemical research. These models differ in complexity and in their number of parameters. How values are assigned to parameters is essential. An overview of major methodologies of parameter estimation is provided. Aspects of parameter identification in the literature are diverse. Individual findings could be better synthesized if notation and expertise of the different scientific communities would be reasonably merged.
Yonss Saranga José, Heiner Dietze, and Andreas Oschlies
Biogeosciences, 14, 1349–1364, https://doi.org/10.5194/bg-14-1349-2017, https://doi.org/10.5194/bg-14-1349-2017, 2017
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This study aims to investigate the diverse subsurface nutrient patterns observed within anticyclonic eddies in the upwelling system off Peru. Two simulated anticyclonic eddies with opposing subsurface nitrate concentrations were analysed. The results show that diverse nutrient patterns within anticyclonic eddies are related to the presence of water mass from different origins at different depths, responding to variations in depth of the circulation strength at the edge of the eddy.
David J. Ullman and Andreas Schmittner
Geosci. Model Dev., 10, 945–958, https://doi.org/10.5194/gmd-10-945-2017, https://doi.org/10.5194/gmd-10-945-2017, 2017
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One major source of uncertainty in the prediction of climate relates to how models simulate clouds and their impact on surface temperatures. We have developed a new method for incorporating the cloud results as derived from complex climate models and applying these results to a more simplified model. The benefit with this approach is that a more simplified model is able to be run more efficiently, while still maintaining complicated cloud effects and their effect on surface temperatures.
Iris Kriest, Volkmar Sauerland, Samar Khatiwala, Anand Srivastav, and Andreas Oschlies
Geosci. Model Dev., 10, 127–154, https://doi.org/10.5194/gmd-10-127-2017, https://doi.org/10.5194/gmd-10-127-2017, 2017
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Global biogeochemical ocean models are subject to a high level of parametric uncertainty. This may be of consequence for their skill with respect to accurately describing features of the present ocean and their sensitivity to possible environmental changes. We present the first results from a framework that combines an offline biogeochemical tracer transport model with an estimation of distribution algorithm, calibrating six biogeochemical model parameters against observed oxygen and nutrients.
Fabian Reith, David P. Keller, and Andreas Oschlies
Earth Syst. Dynam., 7, 797–812, https://doi.org/10.5194/esd-7-797-2016, https://doi.org/10.5194/esd-7-797-2016, 2016
Bei Su, Markus Pahlow, and Andreas Oschlies
Biogeosciences, 13, 4985–5001, https://doi.org/10.5194/bg-13-4985-2016, https://doi.org/10.5194/bg-13-4985-2016, 2016
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Previously identified positive feedbacks within the nitrogen cycle in the eastern tropical South Pacific (ETSP) have challenged our understanding of the observed dynamics and stability of the nitrogen inventory. We present a box model analysis of the biological and biogeochemical relations in the ETSP among nitrogen deposition, benthic denitrification and phosphate regeneration. Our results suggest dominant stabilizing feedbacks tending to keep a balanced nitrogen inventory in the ETSP.
Pepijn Bakker and Andreas Schmittner
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2016-79, https://doi.org/10.5194/gmd-2016-79, 2016
Revised manuscript not accepted
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We present an AMOC-emulator framework consisting of a box model and a statistical tuning methodology that allows us to mimic the behaviour of the Atlantic Meridional Overturning Circulation (AMOC) in any complex global climate model. The simplicity of the AMOC-emulator allows us to run large numbers of simulations, test the importance of a range of uncertainties and thus provide probabilistic AMOC projections driven by future climate change including the partial melt of the Greenland Ice Sheet.
I. Kriest and A. Oschlies
Geosci. Model Dev., 8, 2929–2957, https://doi.org/10.5194/gmd-8-2929-2015, https://doi.org/10.5194/gmd-8-2929-2015, 2015
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We use a global model of oceanic P, N, and O2 cycles to investigate consequences of uncertainties in description of organic matter sinking, remineralization, denitrification, and N2-Fixation. After all biogeochemical and physical processes have been spun-up into a dynamically consistent steady-state, particle sinking and oxidant affinities of aerobic and anaerobic remineralization determine the extent of oxygen minimum zones, global nitrogen fluxes, and the oceanic nitrogen inventory.
W. Koeve, H. Wagner, P. Kähler, and A. Oschlies
Geosci. Model Dev., 8, 2079–2094, https://doi.org/10.5194/gmd-8-2079-2015, https://doi.org/10.5194/gmd-8-2079-2015, 2015
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The natural abundance of 14C in CO2 dissolved in seawater is often used to evaluate circulation and age in the ocean and in ocean models. We study limitations of using natural 14C to determine the time elapsed since water had contact with the atmosphere. We find that, globally, bulk 14C age is dominated by two equally important components, (1) the time component of circulation and (2) the “preformed 14C-age”. Considering preformed 14C-age is critical for an assessment of circulation in models.
L. Nickelsen, D. P. Keller, and A. Oschlies
Geosci. Model Dev., 8, 1357–1381, https://doi.org/10.5194/gmd-8-1357-2015, https://doi.org/10.5194/gmd-8-1357-2015, 2015
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In this paper we find that including the marine cycle of the phytoplankton nutrient iron in a global climate model improves the agreement between observed and simulated nutrient concentrations in the ocean and that a better description of the source of iron from the sediment to the ocean is more important than that of iron-containing dust deposition. Finally, we find that the response of the iron cycle to climate warming affects the phytoplankton growth and nutrient cycles.
B. Su, M. Pahlow, H. Wagner, and A. Oschlies
Biogeosciences, 12, 1113–1130, https://doi.org/10.5194/bg-12-1113-2015, https://doi.org/10.5194/bg-12-1113-2015, 2015
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A box model of the eastern tropical South Pacific oxygen minimum zone suggests that anaerobic water-column remineralization rates have to be slower than aerobic remineralization in order to explain the relatively high values of observed nitrate concentrations. Lateral oxygen supply sufficient to oxidize about one-fifth of the export production is required to prevent an anoxic deep ocean. Under these circumstances, the region can be a net source of fixed nitrogen to the surrounding ocean.
A. Schmittner and D. C. Lund
Clim. Past, 11, 135–152, https://doi.org/10.5194/cp-11-135-2015, https://doi.org/10.5194/cp-11-135-2015, 2015
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Model simulations of carbon isotope changes as a result of a reduction in the Atlantic Meridional Overturning Circulation (AMOC) agree well with sediment data from the early last deglaciation, supporting the idea that the AMOC was substantially reduced during that time period of global warming. We hypothesize, and present supporting evidence, that changes in the AMOC may have caused the coeval rise in atmospheric CO2, owing to a reduction in the efficiency of the ocean's biological pump.
W. Koeve, O. Duteil, A. Oschlies, P. Kähler, and J. Segschneider
Geosci. Model Dev., 7, 2393–2408, https://doi.org/10.5194/gmd-7-2393-2014, https://doi.org/10.5194/gmd-7-2393-2014, 2014
A. E. F. Prowe, M. Pahlow, S. Dutkiewicz, and A. Oschlies
Biogeosciences, 11, 3397–3407, https://doi.org/10.5194/bg-11-3397-2014, https://doi.org/10.5194/bg-11-3397-2014, 2014
K. F. Kvale, K. J. Meissner, D. P. Keller, M. Eby, and A. Schmittner
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmdd-7-1709-2014, https://doi.org/10.5194/gmdd-7-1709-2014, 2014
Revised manuscript not accepted
A. Schmittner and G. D. Egbert
Geosci. Model Dev., 7, 211–224, https://doi.org/10.5194/gmd-7-211-2014, https://doi.org/10.5194/gmd-7-211-2014, 2014
I. Kriest and A. Oschlies
Biogeosciences, 10, 8401–8422, https://doi.org/10.5194/bg-10-8401-2013, https://doi.org/10.5194/bg-10-8401-2013, 2013
O. Duteil, W. Koeve, A. Oschlies, D. Bianchi, E. Galbraith, I. Kriest, and R. Matear
Biogeosciences, 10, 7723–7738, https://doi.org/10.5194/bg-10-7723-2013, https://doi.org/10.5194/bg-10-7723-2013, 2013
A. Schmittner, N. Gruber, A. C. Mix, R. M. Key, A. Tagliabue, and T. K. Westberry
Biogeosciences, 10, 5793–5816, https://doi.org/10.5194/bg-10-5793-2013, https://doi.org/10.5194/bg-10-5793-2013, 2013
V. Cocco, F. Joos, M. Steinacher, T. L. Frölicher, L. Bopp, J. Dunne, M. Gehlen, C. Heinze, J. Orr, A. Oschlies, B. Schneider, J. Segschneider, and J. Tjiputra
Biogeosciences, 10, 1849–1868, https://doi.org/10.5194/bg-10-1849-2013, https://doi.org/10.5194/bg-10-1849-2013, 2013
A. Landolfi, H. Dietze, W. Koeve, and A. Oschlies
Biogeosciences, 10, 1351–1363, https://doi.org/10.5194/bg-10-1351-2013, https://doi.org/10.5194/bg-10-1351-2013, 2013
M. El Jarbi, J. Rückelt, T. Slawig, and A. Oschlies
Biogeosciences, 10, 1169–1182, https://doi.org/10.5194/bg-10-1169-2013, https://doi.org/10.5194/bg-10-1169-2013, 2013
L. M. Zamora, A. Oschlies, H. W. Bange, K. B. Huebert, J. D. Craig, A. Kock, and C. R. Löscher
Biogeosciences, 9, 5007–5022, https://doi.org/10.5194/bg-9-5007-2012, https://doi.org/10.5194/bg-9-5007-2012, 2012
Related subject area
Biogeochemistry: Stable Isotopes & Other Tracers
How long does carbon stay in a near-pristine central Amazon forest? An empirical estimate with radiocarbon
No increase is detected and modeled for the seasonal cycle amplitude of δ13C of atmospheric carbon dioxide
Bias in calculating gross nitrification rates in forested catchments using the triple oxygen isotopic composition (Δ17O) of stream nitrate
Position-specific kinetic isotope effects for nitrous oxide: a new expansion of the Rayleigh model
Technical note: A Bayesian mixing model to unravel isotopic data and quantify trace gas production and consumption pathways for time series data – Time-resolved FRactionation And Mixing Evaluation (TimeFRAME)
Stable iron isotope signals indicate a “pseudo-abiotic" process driving deep iron release in methanic sediments
Separating above-canopy CO2 and O2 measurements into their atmospheric and biospheric signatures
Climatic controls on leaf wax hydrogen isotope ratios in terrestrial and marine sediments along a hyperarid-to-humid gradient
Fractionation of stable carbon isotopes during microbial propionate consumption in anoxic rice paddy soils
Sources and sinks of carbonyl sulfide inferred from tower and mobile atmospheric observations in the Netherlands
Downpour dynamics: outsized impacts of storm events on unprocessed atmospheric nitrate export in an urban watershed
The hidden role of dissolved organic carbon in the biogeochemical cycle of carbon in modern redox-stratified lakes
Biogeochemical processes captured by carbon isotopes in redox-stratified water columns: a comparative study of four modern stratified lakes along an alkalinity gradient
Partitioning of carbon export in the euphotic zone of the oligotrophic South China Sea
Determination of respiration and photosynthesis fractionation factors for atmospheric dioxygen inferred from a vegetation–soil–atmosphere analogue of the terrestrial biosphere in closed chambers
Permafrost degradation and nitrogen cycling in Arctic rivers: insights from stable nitrogen isotope studies
Neodymium budget in the Mediterranean Sea: evaluating the role of atmospheric dusts using a high-resolution dynamical-biogeochemical model
Nitrate isotope investigations reveal future impacts of climate change on nitrogen inputs and cycling in Arctic fjords: Kongsfjorden and Rijpfjorden (Svalbard)
Mineralization of autochthonous particulate organic carbon is a fast channel of organic matter turnover in Germany's largest drinking water reservoir
Carbon isotopic ratios of modern C3 and C4 vegetation on the Indian peninsula and changes along the plant–soil–river continuum – implications for vegetation reconstructions
Controls on nitrite oxidation in the upper Southern Ocean: insights from winter kinetics experiments in the Indian sector
Tracing the source of nitrate in a forested stream showing elevated concentrations during storm events
Intra-skeletal variability in phosphate oxygen isotope composition reveals regional heterothermies in marine vertebrates
Isotopic differences in soil–plant–atmosphere continuum composition and control factors of different vegetation zones on the northern slope of the Qilian Mountains
An analysis of the variability in δ13C in macroalgae from the Gulf of California: indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation
Summertime productivity and carbon export potential in the Weddell Sea, with a focus on the waters adjacent to Larsen C Ice Shelf
Particulate biogenic barium tracer of mesopelagic carbon remineralization in the Mediterranean Sea (PEACETIME project)
Hydrogen and carbon isotope fractionation factors of aerobic methane oxidation in deep-sea water
Host-influenced geochemical signature in the parasitic foraminifera Hyrrokkin sarcophaga
Comparing modified substrate-induced respiration with selective inhibition (SIRIN) and N2O isotope approaches to estimate fungal contribution to denitrification in three arable soils under anoxic conditions
How are oxygen budgets influenced by dissolved iron and growth of oxygenic phototrophs in an iron-rich spring system? Initial results from the Espan Spring in Fürth, Germany
Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin
High-resolution 14C bomb peak dating and climate response analyses of subseasonal stable isotope signals in wood of the African baobab – a case study from Oman
Geographic variability in freshwater methane hydrogen isotope ratios and its implications for global isotopic source signatures
Seasonality of nitrogen sources, cycling, and loading in a New England river discerned from nitrate isotope ratios
Evaluating the response of δ13C in Haloxylon ammodendron, a dominant C4 species in Asian desert ecosystems, to water and nitrogen addition as well as the availability of its δ13C as an indicator of water use efficiency
Modern silicon dynamics of a small high-latitude subarctic lake
Radium-228-derived ocean mixing and trace element inputs in the South Atlantic
Nitrogen isotopic fractionations during nitric oxide production in an agricultural soil
Silicon uptake and isotope fractionation dynamics by crop species
Barium stable isotopes as a fingerprint of biological cycling in the Amazon River basin
Bottomland hardwood forest growth and stress response to hydroclimatic variation: evidence from dendrochronology and tree ring Δ13C values
N2O isotope approaches for source partitioning of N2O production and estimation of N2O reduction – validation with the 15N gas-flux method in laboratory and field studies
Technical note: Single-shell δ11B analysis of Cibicidoides wuellerstorfi using femtosecond laser ablation MC-ICPMS and secondary ion mass spectrometry
Biogeochemical evidence of anaerobic methane oxidation and anaerobic ammonium oxidation in a stratified lake using stable isotopes
Effects of 238U variability and physical transport on water column 234Th downward fluxes in the coastal upwelling system off Peru
Do degree and rate of silicate weathering depend on plant productivity?
Alpine Holocene tree-ring dataset: age-related trends in the stable isotopes of cellulose show species-specific patterns
Ideas and perspectives: The same carbon behaves like different elements – an insight into position-specific isotope distributions
Seasonal dynamics of the COS and CO2 exchange of a managed temperate grassland
Ingrid Chanca, Ingeborg Levin, Susan Trumbore, Kita Macario, Jost Lavric, Carlos Alberto Quesada, Alessandro Carioca de Araújo, Cléo Quaresma Dias Júnior, Hella van Asperen, Samuel Hammer, and Carlos A. Sierra
Biogeosciences, 22, 455–472, https://doi.org/10.5194/bg-22-455-2025, https://doi.org/10.5194/bg-22-455-2025, 2025
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Assessing the net carbon (C) budget of the Amazon entails considering the magnitude and timing of C absorption and losses through respiration (transit time of C). Radiocarbon-based estimates of the transit time of C in the Amazon Tall Tower Observatory (ATTO) suggest a change in the transit time from 6 ± 2 years and 18 ± 4 years within 2 years (October 2019 and December 2021, respectively). This variability indicates that only a fraction of newly fixed C can be stored for decades or longer.
Fortunat Joos, Sebastian Lienert, and Sönke Zaehle
Biogeosciences, 22, 19–39, https://doi.org/10.5194/bg-22-19-2025, https://doi.org/10.5194/bg-22-19-2025, 2025
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How plants regulate their exchange of CO2 and water with the atmosphere under global warming is critical for their carbon uptake and their cooling influence. We analyze the isotope ratio of atmospheric CO2 and detect no significant decadal trends in the seasonal cycle amplitude. The data are consistent with the regulation towards leaf CO2 and intrinsic water use efficiency growing proportionally to atmospheric CO2, in contrast to recent suggestions of downregulation of CO2 and water fluxes.
Weitian Ding, Urumu Tsunogai, and Fumiko Nakagawa
Biogeosciences, 21, 4717–4722, https://doi.org/10.5194/bg-21-4717-2024, https://doi.org/10.5194/bg-21-4717-2024, 2024
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Past studies have used the Δ17O of stream nitrate to estimate the gross nitrification rates (GNRs) in each forested catchment by approximating the Δ17O value of soil nitrate to be equal to that of stream nitrate. Based on inference and calculation of measured data, we found that this approximation resulted in an overestimated GNR. Therefore, it is essential to clarify and verify the Δ17O NO3− values in forested soils and streams before applying the Δ17O values of stream NO3− to GNR estimation.
Elise D. Rivett, Wenjuan Ma, Nathaniel E. Ostrom, and Eric L. Hegg
Biogeosciences, 21, 4549–4567, https://doi.org/10.5194/bg-21-4549-2024, https://doi.org/10.5194/bg-21-4549-2024, 2024
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Many different processes produce nitrous oxide (N2O), a potent greenhouse gas. Measuring the ratio of heavy and light nitrogen isotopes (15N/14N) for the non-exchangeable central and outer N atoms of N2O helps to distinguish sources of N2O. To accurately calculate the position-specific isotopic preference, we developed an expansion of the widely used Rayleigh model. Application of our new model to simulated and experimental data demonstrates its improved accuracy for analyzing N2O synthesis.
Eliza Harris, Philipp Fischer, Maciej P. Lewicki, Dominika Lewicka-Szczebak, Stephen J. Harris, and Fernando Perez-Cruz
Biogeosciences, 21, 3641–3663, https://doi.org/10.5194/bg-21-3641-2024, https://doi.org/10.5194/bg-21-3641-2024, 2024
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Greenhouse gases are produced and consumed via a number of pathways. Quantifying these pathways helps reduce the climate and environmental footprint of anthropogenic activities. The contribution of the pathways can be estimated from the isotopic composition, which acts as a fingerprint for these pathways. We have developed the Time-resolved FRactionation And Mixing Evaluation (TimeFRAME) model to simplify interpretation and estimate the contribution of different pathways and their uncertainty.
Susann Henkel, Bo Liu, Michael Staubwasser, Simone A. Kasemann, Anette Meixner, David Aromokeye, Michael W. Friedrich, and Sabine Kasten
EGUsphere, https://doi.org/10.5194/egusphere-2024-1942, https://doi.org/10.5194/egusphere-2024-1942, 2024
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We intend to unravel iron (Fe) reduction pathways in high depositional methanic sediments because pools of Fe minerals could stimulate methane oxidation, but also generation. Our data from the North Sea indicate that Fe release takes place mechanistically different to Fe reduction in shallow sediments that typically fractionates Fe isotopes. We conclude that fermentation of organic matter involving interspecies electron transfer, partly through conductive Fe oxides, could play an important role.
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
Biogeosciences, 21, 3015–3039, https://doi.org/10.5194/bg-21-3015-2024, https://doi.org/10.5194/bg-21-3015-2024, 2024
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The ratio between atmospheric O2 and CO2 can be used to characterize the carbon balance at the surface. By combining a model and observations from the Hyytiälä forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange because large-scale processes such as entrainment confound this signal. We therefore recommend always using multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Nestor Gaviria-Lugo, Charlotte Läuchli, Hella Wittmann, Anne Bernhardt, Patrick Frings, Mahyar Mohtadi, Oliver Rach, and Dirk Sachse
Biogeosciences, 20, 4433–4453, https://doi.org/10.5194/bg-20-4433-2023, https://doi.org/10.5194/bg-20-4433-2023, 2023
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We analyzed how leaf wax hydrogen isotopes in continental and marine sediments respond to climate along one of the strongest aridity gradients in the world, from hyperarid to humid, along Chile. We found that under extreme aridity, the relationship between hydrogen isotopes in waxes and climate is non-linear, suggesting that we should be careful when reconstructing past hydrological changes using leaf wax hydrogen isotopes so as to avoid overestimating how much the climate has changed.
Ralf Conrad and Peter Claus
Biogeosciences, 20, 3625–3635, https://doi.org/10.5194/bg-20-3625-2023, https://doi.org/10.5194/bg-20-3625-2023, 2023
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Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Propionate is an important intermediate. In the presence of sulfate, it was degraded by Syntrophobacter species via acetate to CO2. In the absence of sulfate, it was mainly consumed by Smithella and methanogenic archaeal species via butyrate and acetate to CH4. However, stable carbon isotope fractionation during the degradation process was quite small.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
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Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Joel T. Bostic, David M. Nelson, and Keith N. Eshleman
Biogeosciences, 20, 2485–2498, https://doi.org/10.5194/bg-20-2485-2023, https://doi.org/10.5194/bg-20-2485-2023, 2023
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Land-use changes can affect water quality. We used tracers of pollution sources and water flow paths to show that an urban watershed exports variable sources during storm events relative to a less developed watershed. Our results imply that changing precipitation patterns combined with increasing urbanization may alter sources of pollution in the future.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2405–2424, https://doi.org/10.5194/bg-20-2405-2023, https://doi.org/10.5194/bg-20-2405-2023, 2023
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Dissolved organic carbon (DOC) is a reservoir of prime importance in the C cycle of both continental and marine systems. It has also been suggested to influence the past Earth climate but is still poorly characterized in ancient-Earth-like environments. In this paper we show how DOC analyses from modern redox-stratified lakes can evidence specific metabolic reactions and environmental factors and how these can help us to interpret the C cycle of specific periods in the Earth's past.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2347–2367, https://doi.org/10.5194/bg-20-2347-2023, https://doi.org/10.5194/bg-20-2347-2023, 2023
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We describe the C cycle of four modern stratified water bodies from Mexico, a necessary step to better understand the C cycle of primitive-Earth-like environments, which were dominated by these kinds of conditions. We highlight the importance of local external factors on the C cycle of these systems. Notably, they influence the sensitivity of the carbonate record to environmental changes. We also show the strong C-cycle variability among these lakes and their organic C sediment record.
Yifan Ma, Kuanbo Zhou, Weifang Chen, Junhui Chen, Jin-Yu Terence Yang, and Minhan Dai
Biogeosciences, 20, 2013–2030, https://doi.org/10.5194/bg-20-2013-2023, https://doi.org/10.5194/bg-20-2013-2023, 2023
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We distinguished particulate organic carbon (POC) export fluxes out of the nutrient-depleted layer (NDL) and the euphotic zone. The amount of POC export flux at the NDL base suggests that the NDL could be a hotspot of particle export. The substantial POC export flux at the NDL base challenges traditional concepts that the NDL was limited in terms of POC export. The dominant nutrient source for POC export fluxes should be subsurface nutrients, which was determined by 15N isotopic mass balance.
Clémence Paul, Clément Piel, Joana Sauze, Nicolas Pasquier, Frédéric Prié, Sébastien Devidal, Roxanne Jacob, Arnaud Dapoigny, Olivier Jossoud, Alexandru Milcu, and Amaëlle Landais
Biogeosciences, 20, 1047–1062, https://doi.org/10.5194/bg-20-1047-2023, https://doi.org/10.5194/bg-20-1047-2023, 2023
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To improve the interpretation of the δ18Oatm and Δ17O of O2 in air bubbles in ice cores, we need to better quantify the oxygen fractionation coefficients associated with biological processes. We performed a simplified analogue of the terrestrial biosphere in a closed chamber. We found a respiration fractionation in agreement with the previous estimates at the microorganism scale, and a terrestrial photosynthetic fractionation was found. This has an impact on the estimation of the Dole effect.
Adam Francis, Raja S. Ganeshram, Robyn E. Tuerena, Robert G. M. Spencer, Robert M. Holmes, Jennifer A. Rogers, and Claire Mahaffey
Biogeosciences, 20, 365–382, https://doi.org/10.5194/bg-20-365-2023, https://doi.org/10.5194/bg-20-365-2023, 2023
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Climate change is causing extensive permafrost degradation and nutrient releases into rivers with great ecological impacts on the Arctic Ocean. We focused on nitrogen (N) release from this degradation and associated cycling using N isotopes, an understudied area. Many N species are released at degradation sites with exchanges between species. N inputs from permafrost degradation and seasonal river N trends were identified using isotopes, helping to predict climate change impacts.
Mohamed Ayache, Jean-Claude Dutay, Kazuyo Tachikawa, Thomas Arsouze, and Catherine Jeandel
Biogeosciences, 20, 205–227, https://doi.org/10.5194/bg-20-205-2023, https://doi.org/10.5194/bg-20-205-2023, 2023
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The neodymium (Nd) is one of the most useful tracers to fingerprint water mass provenance. However, the use of Nd is hampered by the lack of adequate quantification of the external sources. Here, we present the first simulation of dissolved Nd concentration and Nd isotopic composition in the Mediterranean Sea using a high-resolution model. We aim to better understand how the various external sources affect the Nd cycle and particularly assess how it is impacted by atmospheric inputs.
Marta Santos-Garcia, Raja S. Ganeshram, Robyn E. Tuerena, Margot C. F. Debyser, Katrine Husum, Philipp Assmy, and Haakon Hop
Biogeosciences, 19, 5973–6002, https://doi.org/10.5194/bg-19-5973-2022, https://doi.org/10.5194/bg-19-5973-2022, 2022
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Terrestrial sources of nitrate are important contributors to the nutrient pool in the fjords of Kongsfjorden and Rijpfjorden in Svalbard during the summer, and they sustain most of the fjord primary productivity. Ongoing tidewater glacier retreat is postulated to favour light limitation and less dynamic circulation in fjords. This is suggested to encourage the export of nutrients to the middle and outer part of the fjord system, which may enhance primary production within and in offshore areas.
Marlene Dordoni, Michael Seewald, Karsten Rinke, Kurt Friese, Robert van Geldern, Jakob Schmidmeier, and Johannes A. C. Barth
Biogeosciences, 19, 5343–5355, https://doi.org/10.5194/bg-19-5343-2022, https://doi.org/10.5194/bg-19-5343-2022, 2022
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Organic matter (OM) turnover into dissolved inorganic carbon (DIC) was investigated by means of carbon isotope mass balances in Germany's largest water reservoir. This includes a metalimnetic oxygen minimum (MOM). Autochthonous particulate organic carbon (POC) was the main contributor to DIC, with rates that were highest for the MOM. Generally low turnover rates outline the environmental fragility of this water body in the case that OM loads increase due to storm events or land use changes.
Frédérique M. S. A. Kirkels, Hugo J. de Boer, Paulina Concha Hernández, Chris R. T. Martes, Marcel T. J. van der Meer, Sayak Basu, Muhammed O. Usman, and Francien Peterse
Biogeosciences, 19, 4107–4127, https://doi.org/10.5194/bg-19-4107-2022, https://doi.org/10.5194/bg-19-4107-2022, 2022
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The distinct carbon isotopic values of C3 and C4 plants are widely used to reconstruct past hydroclimate, where more C3 plants reflect wetter and C4 plants drier conditions. Here we examine the impact of regional hydroclimatic conditions on plant isotopic values in the Godavari River basin, India. We find that it is crucial to identify regional plant isotopic values and consider drought stress, which introduces a bias in C3 / C4 plant estimates and associated hydroclimate reconstructions.
Mhlangabezi Mdutyana, Tanya Marshall, Xin Sun, Jessica M. Burger, Sandy J. Thomalla, Bess B. Ward, and Sarah E. Fawcett
Biogeosciences, 19, 3425–3444, https://doi.org/10.5194/bg-19-3425-2022, https://doi.org/10.5194/bg-19-3425-2022, 2022
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Nitrite-oxidizing bacteria in the winter Southern Ocean show a high affinity for nitrite but require a minimum (i.e., "threshold") concentration before they increase their rates of nitrite oxidation significantly. The classic Michaelis–Menten model thus cannot be used to derive the kinetic parameters, so a modified equation was employed that also yields the threshold nitrite concentration. Dissolved iron availability may play an important role in limiting nitrite oxidation.
Weitian Ding, Urumu Tsunogai, Fumiko Nakagawa, Takashi Sambuichi, Hiroyuki Sase, Masayuki Morohashi, and Hiroki Yotsuyanagi
Biogeosciences, 19, 3247–3261, https://doi.org/10.5194/bg-19-3247-2022, https://doi.org/10.5194/bg-19-3247-2022, 2022
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Excessive leaching of nitrate from forested catchments during storm events degrades water quality and causes eutrophication in downstream areas. Thus, tracing the source of nitrate increase during storm events in forested streams is important for sustainable forest management. Based on the isotopic compositions of stream nitrate, including Δ17O, this study clarifies that the source of stream nitrate increase during storm events was soil nitrate in the riparian zone.
Nicolas Séon, Romain Amiot, Guillaume Suan, Christophe Lécuyer, François Fourel, Fabien Demaret, Arnauld Vinçon-Laugier, Sylvain Charbonnier, and Peggy Vincent
Biogeosciences, 19, 2671–2681, https://doi.org/10.5194/bg-19-2671-2022, https://doi.org/10.5194/bg-19-2671-2022, 2022
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We analysed the oxygen isotope composition of bones and teeth of four marine species possessing regional heterothermies. We observed a consistent link between oxygen isotope composition and temperature heterogeneities recorded by classical methods. This opens up new perspectives on the determination of the thermoregulatory strategies of extant marine vertebrates where conventional methods are difficult to apply, but also allows us to investigate thermophysiologies of extinct vertebrates.
Yuwei Liu, Guofeng Zhu, Zhuanxia Zhang, Zhigang Sun, Leilei Yong, Liyuan Sang, Lei Wang, and Kailiang Zhao
Biogeosciences, 19, 877–889, https://doi.org/10.5194/bg-19-877-2022, https://doi.org/10.5194/bg-19-877-2022, 2022
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We took the water cycle process of soil–plant–atmospheric precipitation as the research objective. In the water cycle of soil–plant–atmospheric precipitation, precipitation plays the main controlling role. The main source of replenishment for alpine meadow plants is precipitation and alpine meltwater; the main source of replenishment for forest plants is soil water; and the plants in the arid foothills mainly use groundwater.
Roberto Velázquez-Ochoa, María Julia Ochoa-Izaguirre, and Martín Federico Soto-Jiménez
Biogeosciences, 19, 1–27, https://doi.org/10.5194/bg-19-1-2022, https://doi.org/10.5194/bg-19-1-2022, 2022
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Our research is the first approximation to understand the δ13C macroalgal variability in one of the most diverse marine ecosystems in the world, the Gulf of California. The life-form is the principal cause of δ13C macroalgal variability, mainly taxonomy. However, changes in habitat characteristics and environmental conditions also influence the δ13C macroalgal variability. The δ13C macroalgae is indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation.
Raquel F. Flynn, Thomas G. Bornman, Jessica M. Burger, Shantelle Smith, Kurt A. M. Spence, and Sarah E. Fawcett
Biogeosciences, 18, 6031–6059, https://doi.org/10.5194/bg-18-6031-2021, https://doi.org/10.5194/bg-18-6031-2021, 2021
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Biological activity in the shallow Weddell Sea affects the biogeochemistry of recently formed deep waters. To investigate the drivers of carbon and nutrient export, we measured rates of primary production and nitrogen uptake, characterized the phytoplankton community, and estimated nutrient depletion ratios across the under-sampled western Weddell Sea in mid-summer. Carbon export was highest at the ice shelves and was determined by a combination of physical, chemical, and biological factors.
Stéphanie H. M. Jacquet, Christian Tamburini, Marc Garel, Aurélie Dufour, France Van Vambeke, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 5891–5902, https://doi.org/10.5194/bg-18-5891-2021, https://doi.org/10.5194/bg-18-5891-2021, 2021
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We compared carbon remineralization rates (MRs) in the western and central Mediterranean Sea in late spring during the PEACETIME cruise, as assessed using the barium tracer. We reported higher and deeper (up to 1000 m depth) MRs in the western basin, potentially sustained by an additional particle export event driven by deep convection. The central basin is the site of a mosaic of blooming and non-blooming water masses and showed lower MRs that were restricted to the upper mesopelagic layer.
Shinsuke Kawagucci, Yohei Matsui, Akiko Makabe, Tatsuhiro Fukuba, Yuji Onishi, Takuro Nunoura, and Taichi Yokokawa
Biogeosciences, 18, 5351–5362, https://doi.org/10.5194/bg-18-5351-2021, https://doi.org/10.5194/bg-18-5351-2021, 2021
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Hydrogen and carbon isotope ratios of methane as well as the relevant biogeochemical parameters and microbial community compositions in hydrothermal plumes in the Okinawa Trough were observed. We succeeded in simultaneously determining hydrogen and carbon isotope fractionation factors associated with aerobic oxidation of methane in seawater (εH = 49.4 ± 5.0 ‰, εC = 5.2 ± 0.4 ‰) – the former being the first of its kind ever reported.
Nicolai Schleinkofer, David Evans, Max Wisshak, Janina Vanessa Büscher, Jens Fiebig, André Freiwald, Sven Härter, Horst R. Marschall, Silke Voigt, and Jacek Raddatz
Biogeosciences, 18, 4733–4753, https://doi.org/10.5194/bg-18-4733-2021, https://doi.org/10.5194/bg-18-4733-2021, 2021
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We have measured the chemical composition of the carbonate shells of the parasitic foraminifera Hyrrokkin sarcophaga in order to test if it is influenced by the host organism (bivalve or coral). We find that both the chemical and isotopic composition is influenced by the host organism. For example strontium is enriched in foraminifera that grew on corals, whose skeleton is built from aragonite, which is naturally enriched in strontium compared to the bivalves' calcite shell.
Lena Rohe, Traute-Heidi Anderson, Heinz Flessa, Anette Goeske, Dominika Lewicka-Szczebak, Nicole Wrage-Mönnig, and Reinhard Well
Biogeosciences, 18, 4629–4650, https://doi.org/10.5194/bg-18-4629-2021, https://doi.org/10.5194/bg-18-4629-2021, 2021
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This is the first experimental setup combining a complex set of methods (microbial inhibitors and isotopic approaches) to differentiate between N2O produced by fungi or bacteria during denitrification in three soils. Quantifying the fungal fraction with inhibitors was not successful due to large amounts of uninhibited N2O production. All successful methods suggested a small or missing fungal contribution. Artefacts occurring with microbial inhibition to determine N2O fluxes are discussed.
Inga Köhler, Raul E. Martinez, David Piatka, Achim J. Herrmann, Arianna Gallo, Michelle M. Gehringer, and Johannes A. C. Barth
Biogeosciences, 18, 4535–4548, https://doi.org/10.5194/bg-18-4535-2021, https://doi.org/10.5194/bg-18-4535-2021, 2021
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We investigated how high Fe(II) levels influence the O2 budget of a circum-neutral Fe(II)-rich spring and if a combined study of dissolved O (DO) and its isotopic composition can help assess this effect. We showed that dissolved Fe(II) can exert strong effects on the δ18ODO even though a constant supply of atmospheric O2 occurs. In the presence of photosynthesis, direct effects of Fe oxidation become masked. Critical Fe(II) concentrations indirectly control the DO by enhancing photosynthesis.
Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast
Biogeosciences, 18, 4491–4510, https://doi.org/10.5194/bg-18-4491-2021, https://doi.org/10.5194/bg-18-4491-2021, 2021
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Pacific water flowing eastward through the Canadian Arctic plays an important role in redistributing nutrients to the northwest Atlantic Ocean. Using samples collected from northern Baffin Bay to the southern Labrador Shelf, we show that stable isotopic ratios in seawater nitrate reflect the fraction of Pacific to Atlantic water. These results provide a new framework for interpreting patterns of nitrogen isotopic variability recorded in modern and archival organic materials in the region.
Franziska Slotta, Lukas Wacker, Frank Riedel, Karl-Uwe Heußner, Kai Hartmann, and Gerhard Helle
Biogeosciences, 18, 3539–3564, https://doi.org/10.5194/bg-18-3539-2021, https://doi.org/10.5194/bg-18-3539-2021, 2021
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The African baobab is a challenging climate and environmental archive for its semi-arid habitat due to dating uncertainties and parenchyma-rich wood anatomy. Annually resolved F14C data of tree-ring cellulose (1941–2005) from a tree in Oman show the annual character of the baobab’s growth rings but were up to 8.8 % lower than expected for 1964–1967. Subseasonal δ13C and δ18O patterns reveal years with low average monsoon rain as well as heavy rainfall events from pre-monsoonal cyclones.
Peter M. J. Douglas, Emerald Stratigopoulos, Sanga Park, and Dawson Phan
Biogeosciences, 18, 3505–3527, https://doi.org/10.5194/bg-18-3505-2021, https://doi.org/10.5194/bg-18-3505-2021, 2021
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Hydrogen isotopes could be a useful tool to help resolve the geographic distribution of methane emissions from freshwater environments. We analyzed an expanded global dataset of freshwater methane hydrogen isotope ratios and found significant geographic variation linked to water isotopic composition. This geographic variability could be used to resolve changing methane fluxes from freshwater environments and provide more accurate estimates of the relative balance of global methane sources.
Veronica R. Rollinson, Julie Granger, Sydney C. Clark, Mackenzie L. Blanusa, Claudia P. Koerting, Jamie M. P. Vaudrey, Lija A. Treibergs, Holly C. Westbrook, Catherine M. Matassa, Meredith G. Hastings, and Craig R. Tobias
Biogeosciences, 18, 3421–3444, https://doi.org/10.5194/bg-18-3421-2021, https://doi.org/10.5194/bg-18-3421-2021, 2021
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We measured nutrients and the naturally occurring nitrogen (N) and oxygen (O) stable isotope ratios of nitrate discharged from a New England river over an annual cycle, to monitor N loading and identify dominant sources from the watershed. We uncovered a seasonality to loading and sources of N from the watershed. Seasonality in the nitrate isotope ratios also informed on N cycling, conforming to theoretical expectations of riverine nutrient cycling.
Zixun Chen, Xuejun Liu, Xiaoqing Cui, Yaowen Han, Guoan Wang, and Jiazhu Li
Biogeosciences, 18, 2859–2870, https://doi.org/10.5194/bg-18-2859-2021, https://doi.org/10.5194/bg-18-2859-2021, 2021
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δ13C in plants is a sensitive long-term indicator of physiological acclimatization. The present study suggests that precipitation change and increasing atmospheric N deposition have little impact on δ13C of H. ammodendron, a dominant plant in central Asian deserts, but affect its gas exchange. In addition, this study shows that δ13C of H. ammodendron could not indicate its water use efficiency (WUE), suggesting that whether δ13C of C4 plants indicates WUE is species-specific.
Petra Zahajská, Carolina Olid, Johanna Stadmark, Sherilyn C. Fritz, Sophie Opfergelt, and Daniel J. Conley
Biogeosciences, 18, 2325–2345, https://doi.org/10.5194/bg-18-2325-2021, https://doi.org/10.5194/bg-18-2325-2021, 2021
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The drivers of high accumulation of single-cell siliceous algae (diatoms) in a high-latitude lake have not been fully characterized before. We studied silicon cycling of the lake through water, radon, silicon, and stable silicon isotope balances. Results showed that groundwater brings 3 times more water and dissolved silica than the stream inlet. We demonstrate that groundwater discharge and low sediment deposition have driven the high diatom accumulation in the studied lake in the past century.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671, https://doi.org/10.5194/bg-18-1645-2021, https://doi.org/10.5194/bg-18-1645-2021, 2021
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The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Zhongjie Yu and Emily M. Elliott
Biogeosciences, 18, 805–829, https://doi.org/10.5194/bg-18-805-2021, https://doi.org/10.5194/bg-18-805-2021, 2021
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In this study, we demonstrated distinct nitrogen isotope effects for nitric oxide (NO) production from major microbial and chemical NO sources in an agricultural soil. These results highlight characteristic bond-forming and breaking mechanisms associated with microbial and chemical NO production and implicate that simultaneous isotopic analyses of NO and nitrous oxide (N2O) can lead to unprecedented insights into the sources and processes controlling NO and N2O emissions from agricultural soils.
Daniel A. Frick, Rainer Remus, Michael Sommer, Jürgen Augustin, Danuta Kaczorek, and Friedhelm von Blanckenburg
Biogeosciences, 17, 6475–6490, https://doi.org/10.5194/bg-17-6475-2020, https://doi.org/10.5194/bg-17-6475-2020, 2020
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Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Quentin Charbonnier, Julien Bouchez, Jérôme Gaillardet, and Éric Gayer
Biogeosciences, 17, 5989–6015, https://doi.org/10.5194/bg-17-5989-2020, https://doi.org/10.5194/bg-17-5989-2020, 2020
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The abundance and isotope composition of the trace metal barium (Ba) allows us to track and quantify nutrient cycling throughout the Amazon Basin. In particular, we show that the Ba biological fingerprint evolves from that of a strong net nutrient uptake in the mountainous area of the Andes towards efficient nutrient recycling on the plains of the Lower Amazon. Our study highlights the fact that the geochemical signature of rock-derived nutrients transported by the Amazon is scarred by life.
Ajinkya G. Deshpande, Thomas W. Boutton, Ayumi Hyodo, Charles W. Lafon, and Georgianne W. Moore
Biogeosciences, 17, 5639–5653, https://doi.org/10.5194/bg-17-5639-2020, https://doi.org/10.5194/bg-17-5639-2020, 2020
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Wetland forests in the southern USA are threatened by changing climate and human-induced pressures. We used tree ring widths and C isotopes as indicators of forest growth and physiological stress, respectively, and compared these to past climate data. We observed that vegetation growing in the drier patches is susceptible to stress, while vegetation growth and physiology in wetter patches is less sensitive to unfavorable environmental conditions, highlighting the importance of optimal wetness.
Dominika Lewicka-Szczebak, Maciej Piotr Lewicki, and Reinhard Well
Biogeosciences, 17, 5513–5537, https://doi.org/10.5194/bg-17-5513-2020, https://doi.org/10.5194/bg-17-5513-2020, 2020
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We present the first validation of N2O isotopic approaches for estimating N2O source pathways and N2O reduction. These approaches are widely used for tracing soil nitrogen cycling, but the results of these estimations are very uncertain. Here we report the results from parallel treatments allowing for precise validation of these approaches, and we propose the best strategies for results interpretation, including the new idea of an isotope model integrating three isotopic signatures of N2O.
Markus Raitzsch, Claire Rollion-Bard, Ingo Horn, Grit Steinhoefel, Albert Benthien, Klaus-Uwe Richter, Matthieu Buisson, Pascale Louvat, and Jelle Bijma
Biogeosciences, 17, 5365–5375, https://doi.org/10.5194/bg-17-5365-2020, https://doi.org/10.5194/bg-17-5365-2020, 2020
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The isotopic composition of boron in carbonate shells of marine unicellular organisms is a popular tool to estimate seawater pH. Usually, many shells need to be dissolved and measured for boron isotopes, but the information on their spatial distribution is lost. Here, we investigate two techniques that allow for measuring boron isotopes within single shells and show that they yield robust mean values but provide additional information on the heterogeneity within and between single shells.
Florian Einsiedl, Anja Wunderlich, Mathieu Sebilo, Ömer K. Coskun, William D. Orsi, and Bernhard Mayer
Biogeosciences, 17, 5149–5161, https://doi.org/10.5194/bg-17-5149-2020, https://doi.org/10.5194/bg-17-5149-2020, 2020
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Nitrate pollution of freshwaters and methane emissions into the atmosphere are crucial factors in deteriorating the quality of drinking water and in contributing to global climate change. Here, we report vertical concentration and stable isotope profiles of CH4, NO3-, NO2-, and NH4+ in the water column of Fohnsee (southern Bavaria, Germany) that may indicate linkages between nitrate-dependent anaerobic methane oxidation and the anaerobic oxidation of ammonium.
Ruifang C. Xie, Frédéric A. C. Le Moigne, Insa Rapp, Jan Lüdke, Beat Gasser, Marcus Dengler, Volker Liebetrau, and Eric P. Achterberg
Biogeosciences, 17, 4919–4936, https://doi.org/10.5194/bg-17-4919-2020, https://doi.org/10.5194/bg-17-4919-2020, 2020
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Thorium-234 (234Th) is widely used to study carbon fluxes from the surface ocean to depth. But few studies stress the relevance of oceanic advection and diffusion on the downward 234Th fluxes in nearshore environments. Our study in offshore Peru showed strong temporal variations in both the importance of physical processes on 234Th flux estimates and the oceanic residence time of 234Th, whereas salinity-derived seawater 238U activities accounted for up to 40 % errors in 234Th flux estimates.
Ralf A. Oeser and Friedhelm von Blanckenburg
Biogeosciences, 17, 4883–4917, https://doi.org/10.5194/bg-17-4883-2020, https://doi.org/10.5194/bg-17-4883-2020, 2020
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We present a novel strategy to decipher the relative impact of biogenic and abiotic drivers of weathering. We parameterized the nutrient fluxes in four ecosystems along a climate and vegetation gradient situated on the Chilean Coastal Cordillera. We investigated how nutrient demand by plants drives weathering. We found that the increase in biomass nutrient demand is accommodated by faster nutrient recycling rather than an increase in the weathering–release rates.
Tito Arosio, Malin M. Ziehmer, Kurt Nicolussi, Christian Schlüchter, and Markus Leuenberger
Biogeosciences, 17, 4871–4882, https://doi.org/10.5194/bg-17-4871-2020, https://doi.org/10.5194/bg-17-4871-2020, 2020
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Stable isotopes in tree-ring cellulose are tools for climatic reconstructions, but interpretation is challenging due to nonclimate trends. We analyzed the tree-age trends in tree-ring isotopes of deciduous larch and evergreen cembran pine. Samples covering the whole Holocene were collected at the tree line in the Alps. For cambial ages over 100 years, we prove the absence of age trends in δD, δ18O, and δ13C for both species. For lower cambial ages, trends differ for each isotope and species.
Yuyang He, Xiaobin Cao, and Huiming Bao
Biogeosciences, 17, 4785–4795, https://doi.org/10.5194/bg-17-4785-2020, https://doi.org/10.5194/bg-17-4785-2020, 2020
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Different carbon sites in a large organic molecule have different isotope compositions. Different carbon sites may not have the chance to exchange isotopes at all. The lack of appreciation of this notion might be blamed for an unsettled debate on the thermodynamic state of an organism. Here we demonstrate using minerals, N2O, and acetic acid that the dearth of exchange among different carbon sites renders them as independent as if they were different elements in organic molecules.
Felix M. Spielmann, Albin Hammerle, Florian Kitz, Katharina Gerdel, and Georg Wohlfahrt
Biogeosciences, 17, 4281–4295, https://doi.org/10.5194/bg-17-4281-2020, https://doi.org/10.5194/bg-17-4281-2020, 2020
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Carbonyl sulfide (COS) can be used as a proxy for plant photosynthesis on an ecosystem scale. However, the relationships between COS and CO2 fluxes and their dependence on daily to seasonal changes in environmental drivers are still poorly understood. We examined COS and CO2 ecosystem fluxes above an agriculturally used mountain grassland for 6 months. Harvesting of the grassland disturbed the otherwise stable COS-to-CO2 uptake ratio. We even found the canopy to release COS during those times.
Cited articles
Alkhatib, M., Lehmann, M. F., and del Giorgio, P. A.: The nitrogen isotope effect of benthic remineralization-nitrification-denitrification coupling in an estuarine environment, Biogeosciences, 9, 1633–1646, https://doi.org/10.5194/bg-9-1633-2012, 2012.
Altabet, M. A.: Constraints on oceanic N balance/imbalance from sedimentary 15N records, Biogeosciences, 4, 75–86, https://doi.org/10.5194/bg-4-75-2007, 2007.
Altabet, M. A., Francois, R., Murray, D. W., and Prell, W. L.: Climate-related variations in denitrification in the arabian sea from sediment 15N/14N ratios, Nature, 373, 506–509, 1995.
Altabet, M. A., Ryabenko, E., Stramma, L., Wallace, D. W. R., Frank, M., Grasse, P., and Lavik, G.: An eddy-stimulated hotspot for fixed nitrogen-loss from the Peru oxygen minimum zone, Biogeosciences, 9, 4897–4908, https://doi.org/10.5194/bg-9-4897-2012, 2012.
Antonov, J. I., Seidov, D., Boyer, T. P., Locarnini, R. A., Mishonov, A. V., Garcia, H. E., Baranova, O. K., Zweng, M. M., and Johnson, D. R.: World ocean atlas 2009, volume 2: Salinity, in: Noaa atlas nesdis 69, edited by: Levitus, S., US Government Printing Office, Washington, DC, 184, 2010.
Aumont, O., Maier-Reimer, E., Blain, S., and Monfray, P.: An ecosystem model of the global ocean including fe, si, p colimitations, Global Biogeochem. Cy., 17, 1060, https://doi.org/10.1029/2001gb001745, 2003.
Berelson, W. M.: Particle settling rates increase wth depth in the ocean, Deep-SeaRes. Pt. II, 49, 237–251, https://doi.org/10.1016/S0967-0645(01)00102-3, 2001.
Bianchi, D., Dunne, J. P., Sarmiento, J. L., and Galbraith, E. D.: Data-based estimates of suboxia, denitrification, and n2o production in the ocean and their sensitivities to dissolved O2, Global Biogeochem. Cy., 26, GB2009, https://doi.org/10.1029/2011gb004209, 2012.
Bohlen, L., Dale, A. W., and Wallmann, K.: Simple transfer functions for calculating benthic fixed nitrogen losses and C : N : P regeneration ratios in global biogeochemical models, Global Biogeochem. Cy., 26, GB3029, https://doi.org/10.1029/2011gb004198, 2012.
Brandes, J. A., Devol, A. H., Yoshinari, T., Jayakumar, D. A., and Naqvi, S. W. A.: Isotopic composition of nitrate in the central arabian sea and eastern tropical north pacific: A tracer for mixing and nitrogen cycles, Limnnol. Oceanogr., 43, 1680–1689, 1998.
Brandes, J. A. and Devol, A. H.: A global marine-fixed nitrogen isotopic budget: Implications for holocene nitrogen cycling, Global Biogeochem. Cy., 16, 1120, https://doi.org/10.1029/2001GB001856, 2002.
Bulow, S. E., Rich, J. J., Naik, H. S., Pratihary, A. K., and Ward, B. B.: Denitrification exceeds anammox as a nitrogen loss pathway in the arabian sea oxygen minimum zone, Deep-SeaRes. Pt. I, 57, 384–393, 2010.
Cline, J. D. and Kaplan, I. R.: Isotopic fractionation of dissolved nitrate during denitrification in the eastern tropical north pacific ocean, Mar. Chem., 3, 271–299, 1975.
Codispoti, L. A.: An oceanic fixed nitrogen sink exceeding 400 Tg N a−1 vs the concept of homeostasis in the fixed-nitrogen inventory, Biogeosciences, 4, 233–253, https://doi.org/10.5194/bg-4-233-2007, 2007.
Codispoti, L. A., Brandes, J. A., Christensen, J. P., Devol, A. H., Naqvi, S. W. A., Paerl, H. W., and Yoshinari, T.: The oceanic fixed nitrogen and nitrous oxide budgets: Moving targets as we enter the anthropocene?, Sci. Mar., 65, 85–105, https://doi.org/10.3989/scimar.2001.65s285, 2001.
Deutsch, C., Sigman, D. M., Thunell, R. C., Meckler, A. N., and Haug, G. H.: Isotopic constraints on glacial/interglacial changes in the oceanic nitrogen budget, Global Biogeochem. Cy., 18, GB4012, https://doi.org/10.1029/2003gb002189, 2004.
Deutsch, C., Sarmiento, J. L., Sigman, D. M., Gruber, N., and Dunne, J. P.: Spatial coupling of nitrogen inputs and losses in the ocean, Nature, 11, 163–167, 2007.
DeVries, T., Deutsch, C., Rafter, P. A., and Primeau, F.: Marine denitrification rates determined from a global 3-D inverse model, Biogeosciences, 10, 2481–2496, https://doi.org/10.5194/bg-10-2481-2013, 2013.
Duce, R. A., LaRoche, J., Altieri, K., Arrigo, K. R., Baker, A. R., Capone, D. G., Cornell, S., Dentener, F., Galloway, J., Ganeshram, R. S., Geider, R. J., Jickells, T., Kuypers, M. M., Langlois, R., Liss, P. S., Liu, S. M., Middelburg, J. J., Moore, C. M., Nickovic, S., Oschlies, A., Pedersen, T., Prospero, J., Schlitzer, R., Seitzinger, S., Sorensen, L. L., Uematsu, M., Ulloa, O., Voss, M., Ward, B., and Zamora, L.: Impacts of atmospheric anthropogenic nitrogen on the open ocean, Science, 320, 893–897, https://doi.org/10.1126/science.1150369, 2008.
Eby, M., Zickfeld, K., Montenegro, A., Archer, D., Meissner, K. J., and Weaver, A. J.: Lifetime of anthropogenic climate change: Millennial time scales of potential CO2 and surface temperature perturbations, J. Climate, 22, 2501–2511, https://doi.org/10.1175/2008jcli2554.1, 2009.
Eugster, O. and Gruber, N.: A probabilistic estimate of global marine n-fixation and denitrification, Global Biogeochem. Cy., 26, GB4013, https://doi.org/10.1029/2012gb004300, 2012.
Falkowski, P. G.: Evolution of the nitrogen cycle and its influence on the biological sequestration of co2 in the ocean, Nature, 387, 272–275, 1997.
Fennel, K., Wilkin, J., Levin, J., Moisan, J., O'Reilly, J., and Haidvogel, D.: Nitrogen cycling in the middle atlantic bight: Results from a three-dimensional model and implications for the north atlantic nitrogen budget, Global Biogeochem. Cy., 20, GB3007, https://doi.org/10.1029/2005GB002456, 2006.
Fennel, K., Brady, D., DiToro, D., Fulweiler, R., Gardner, W., Giblin, A., McCarthy, M., Rao, A., Seitzinger, S., Thouvenot-Korppoo, M., and Tobias, C.: Modeling denitrification in aquatic sediments, Biogeochemistry, 93, 159–178, https://doi.org/10.1007/s10533-008-9270-z, 2009.
Foster, R. A., Kuypers, M. M. M., Vagner, T., Paerl, R. W., Musat, N., and Zehr, J. P.: Nitrogen fixation and transfer in open ocean diatom-cyanobacterial symbioses, ISME J., 5, 1484–1493, 2011.
Galbraith, E. D. and Kienast, M.: The acceleration of oceanic denitrification during deglacial warming, Nat. Geosci., 6, 579–584, https://doi.org/10.1038/ngeo1832, 2013.
Galbraith, E. D., Gnanadesikan, A., Dunne, J. P., and Hiscock, M. R.: Regional impacts of iron-light colimitation in a global biogeochemical model, Biogeosciences, 7, 1043–1064, https://doi.org/10.5194/bg-7-1043-2010, 2010.
Galloway, J. N., Dentener, F. J., Capone, D. G., Boyer, E. W., Howarth, R. W., Seitzinger, S. P., Asner, G. P., Cleveland, C. C., Green, P. A., Holland, E. A., Karl, D. M., Michaels, A. F., Porter, J. H., Townsend, A. R., and Vöosmarty, C. J.: Nitrogen cycles: Past, present, and future, Biogeochemistry, 70, 153–226, https://doi.org/10.1007/s10533-004-0370-0, 2004.
Garcia, H. E., Locarnini, R. A., Boyer, T. P., Antonov, J. I., Baranov, O. K., Zweng, M. M., and Johnson, D. R.: World ocean atlas 2009, volume 3: Dissolved oxygen, apparent oxygen utilization, and oxygen saturation, in: Noaa atlas nesdis 70, edited by: Levitus, S., US Government Printing Office, Washington, DC, 344, 2010a.
Garcia, H. E., Locarnini, R. A., Boyer, T. P., Antonov, J. I., Zweng, M. M., Baranov, O. K., and Johnson, D. R.: World ocean atlas 2009, volume 4: Nutrients (phosphate, nitrate, silicate), in: Noaa atlas nesdis 71, edited by: Levitus, S., US Government Printing Office, Washington, DC, 398, 2010b.
Gent, P. R. and McWilliams, J. C.: Isopycnal mixing in ocean circulation models, Journal of Physical Oceanography, 20, 150–155, https://doi.org/10.1175/1520-0485(1990)020<0150:IMIOCM>2.0.CO;2, 1990.
Giraud, X., Bertrand, P., Garc, on, V., and Dadou, I.: Modeling delta15n evolution: First palaeoceanographic applications in a coastal upwelling system, J. Mar. Res., 58, 609–630, 2000.
Gnanadesikan, A., Dunne, J. P., and John, J.: Understanding why the volume of suboxic waters does not increase over centuries of global warming in an Earth System Model, Biogeosciences, 9, 1159–1172, https://doi.org/10.5194/bg-9-1159-2012, 2012.
Granger, J., Prokopenko, M. G., Sigman, D. M., Mordy, C. W., Morse, Z. M., Morales, L. V., Sambrotto, R. N., and Plessen, B.: Coupled nitrification-denitrification in sediment of the eastern bering sea shelf leads to 15N enrichment of fixed n in shelf waters, J. Geophys. Res., 116, C11006, https://doi.org/10.1029/2010jc006751, 2011.
Großkopf, T., Mohr, W., Baustian, T., Schunck, H., Gill, D., Kuypers, M. M. M., Lavik, G., Schmitz, R. A., Wallace, D. W. R., and LaRoche, J.: Doubling of marine dinitrogen-fixation rates based on direct measurements, Nature, 488, 361–364, http://www.nature.com/nature/journal/v488/n7411/abs/nature11338.html-supplementary-information, 2012.
Gruber, N.: The dynamics of the marine nitrogen cycle and its influence on atmospheric CO2 variations, in: The ocean carbon cycle and climate, IV Edn., edited by: Follows, M. and Oguz, T., Nato science series, Kluwer Academics, Dordrecht, 97–148, 2004.
Gruber, N.: Chapter 1 – the marine nitrogen cycle: Overview and challenges, in: Nitrogen in the marine environment, 2nd Edn., Academic Press, San Diego, 1–50, 2008.
Gruber, N. and Sarmiento, J. L.: Global patterns of marine nitrogen fixation and denitrification, Global Biogeochem. Cy., 11, 235–266, 1997.
Holl, C. M., and Montoya, J. P.: Interactions between nitrate uptake and nitrogen fixation in continuous cultures of the marine diazotroph trichodesmium (cyanobacteria), J. Phycol., 41, 1178–1183, https://doi.org/10.1111/j.1529-8817.2005.00146.x, 2005.
Kalnay, E., Kanamitsu, M., Kistler, R., Collins, W., Deaven, D., Gandin, L., Iredell, M., Saha, S., White, G., Woollen, J., Zhu, Y., Leetmaa, A., Reynolds, R., Chelliah, M., Ebisuzaki, W., Higgins, W., Janowiak, J., Mo, K. C., Ropelewski, C., Wang, J., Jenne, R., and Joseph, D.: The ncep/ncar 40-year reanalysis project, B. Am. Meteorol. Soc., 77, 437–471, https://doi.org/10.1175/1520-0477(1996)077<0437:tnyrp>2.0.co;2, 1996.
Karl, D., Michaels, A., Bergman, B., Capone, D., Carpenter, E., Letelier, R., Lipschultz, F., Paerl, H., Sigman, D., and Stal, L.: Dinitrogen fixation in the world's oceans, Biogeochemistry, 57–58, 47–98, https://doi.org/10.1023/a:1015798105851, 2002a.
Karl, D., Michaels, A., Bergman, B., Capone, D., Carpenter, E., Letelier, R., Lipshultz, F., Paerl, H., Sigman, D., and Stal, L.: Dinitrogen fixation in the world's oceans, Biogeochemistry, 57/58, 47–98, 2002b.
Klausmeier, C. A., Litchman, E., Daufresne, T., and Levin, S. A.: Optimal nitrogen-to-phosphorus stoichiometry of phytoplankton, Nature, 429, 171–174, http://www.nature.com/nature/journal/v429/n6988/suppinfo/nature02454_S1.html, 2004.
Kuypers, M. M. M., Sliekers, A. O., Lavik, G., Schmid, M., Jorgensen, B. B., Kuenen, J. G., Sinninghe Damste, J. S., Strous, M., and Jetten, M. S. M.: Anaerobic ammonium oxidation by anammox bacteria in the black sea, Nature, 422, 608–611, 2003.
Kuypers, M. M. M., Lavik, G., Woebken, D., Schmid, M., Fuchs, B. M., Amann, R., Jørgensen, B. B., and Jetten, M. S. M.: Massive nitrogen loss from the benguela upwelling system through anaerobic ammonium oxidation, P. Natl. Acad. Sci. USA, 102, 6478–6483, https://doi.org/10.1073/pnas.0502088102, 2005.
Lam, P., Lavik, G., Jensen, M. M., van de Vossenberg, J., Schmid, M., Woebken, D., Gutiérrez, D., Amann, R., Jetten, M. S. M., and Kuypers, M. M. M.: Revising the nitrogen cycle in the peruvian oxygen minimum zone, P. Natl. Acad. Sci. USA, 106, 4752–4757, https://doi.org/10.1073/pnas.0812444106, 2009.
Large, W. G., Danabasoglu, G., McWilliams, J. C., Gent, P. R., and Bryan, F. O.: Equatorial circulation of a global ocean climate model with anisotropic horizontal viscosity, J. Phys. Oceanogr., 31, 518–536, https://doi.org/10.1175/1520-0485(2001)031<0518:ECOAGO>2.0.CO;2, 2001.
Lehmann, M. F., Sigman, D. M., and Berelson, W. M.: Coupling the 15N/14N and 18O/16O of nitrate as a constraint on benthic nitrogen cycling, Mar. Chem., 88, 1–20, 2004.
Lehmann, M. F., Sigman, D. M., McCorkle, D. C., Granger, J., Hoffmann, S., Cane, G., and Brunelle, B. G.: The distribution of nitrate 15N/14N in marine sediments and the impact of benthic nitrogen loss on the isotopic composition of oceanic nitrate, Geochim. Cosmochim. Ac., 71, 5384–5404, 2007.
Le Quéré, C. L., Harrison, S. P., Colin Prentice, I., Buitenhuis, E. T., Aumont, O., Bopp, L., Claustre, H., Cotrim Da Cunha, L., Geider, R., Giraud, X., Klaas, C., Kohfeld, K. E., Legendre, L., Manizza, M., Platt, T., Rivkin, R. B., Sathyendranath, S., Uitz, J., Watson, A. J., and Wolf-Gladrow, D.: Ecosystem dynamics based on plankton functional types for global ocean biogeochemistry models, Glob. Change Biol., 11, 2016–2040, https://doi.org/10.1111/j.1365-2486.2005.1004.x, 2005.
Letelier, R. M. and Karl, D. M.: Trichodesmium spp. Physiology and nutrient fluxes in the north pacific subtropical gyre, Aquat. Microb. Ecol., 15, 265–276, https://doi.org/10.3354/ame015265, 1998.
Locarnini, R. A., Mishonov, A. V., Antonov, J. I., Boyer, T. P., Garcia, H. E., Baranova, O. K., Zweng, M. M., and Johnson, D. R.: World ocean atlas 2009, volume 1: Temperature, in: Noaa atlas nesdis 68, edited by: Levitus, S., US Government Printing Office, Washington, DC, 184, 2010.
Mahaffey, C., Michaels, A. F., and Capone, D. G.: The conundrum of marine n2 fixation, Am. J. Sci., 305, 546–595, https://doi.org/10.2475/ajs.305.6-8.546, 2005.
Mahowald, N. M., Baker, A. R., Bergametti, G., Brooks, N., Duce, R. A., Jickells, T. D., Kubilay, N., Prospero, J. M., and Tegen, I.: Atmospheric global dust cycle and iron inputs to the ocean, Global Biogeochem. Cy., 19, GB4025, https://doi.org/10.1029/2004gb002402, 2005a.
Mahowald, N. M., Baker, A. R., Bergametti, G., Brooks, N., Duce, R. A., Jickells, T. D., Kubilay, N., Prospero, J. M., and Tegen, I.: Atmospheric global dust cycle and iron inputs to the ocean, Global Biogeochem. Cy., 19, GB4025, https://doi.org/10.1029/2004GB002402, 2005b.
Mahowald, N. M., Muhs, D. R., Levis, S., Rasch, P. J., Yoshioka, M., Zender, C. S., and Luo, C.: Change in atmospheric mineral aerosols in response to climate: Last glacial period, preindustrial, modern, and doubled carbon dioxide climates, J. Geophys. Res., 111, D10202, https://doi.org/10.1029/2005jd006653, 2006.
Mahowald, N. M., Engelstaedter, S., Luo, C., Sealy, A., Artaxo, P., Benitez-Nelson, C., Bonnet, S., Chen, Y., Chuang, P. Y., Cohen, D. D., Dulac, F., Herut, B., Johansen, A. M., Kubilay, N., Losno, R., Maenhaut, W., Paytan, A., Prospero, J. A., Shank, L. M., and Siefert, R. L.: Atmospheric iron deposition: Global distribution, variability, and human perturbations, in: Annual review of marine science, Annual review of marine science, Annual Reviews, Palo Alto, 245–278, 2009.
Mariotti, A., Germon, J., Hubert, P., Kaiser, P., Letolle, R., Tardieux, A., and Tardieux, P.: Experimental determination of nitrogen kinetic isotope fractionation: Some principles; illustration for the denitrification and nitrification processes, Plant Soil, 62, 413–430, https://doi.org/10.1007/bf02374138, 1981.
McElroy, M. B.: Marine biological controls on atmospheric co2 and climate, Nature, 302, 328–329, 1983.
Middelburg, J. J., Soetaert, K., Herman, P. M. J., and Heip, C. H. R.: Denitrification in marine sediments: A model study, Global Biogeochem. Cy., 10, 661–673, https://doi.org/10.1029/96gb02562, 1996.
Mohr, W., Großkopf, T., Wallace, D. W. R., and LaRoche, J.: Methodological underestimation of oceanic nitrogen fixation rates, PLoS ONE, 5, e12583, https://doi.org/10.1371/journal.pone.0012583, 2010.
Monteiro, F. M., Dutkiewicz, S., and Follows, M. J.: Biogeographical controls on the marine nitrogen fixers, Global Biogeochem. Cy., 25, GB2003, https://doi.org/10.1029/2010gb003902, 2011.
Montoya, J. P., Holl, C. M., Zehr, J. P., Hansen, A., Villareal, T. A., and Capone, D. G.: High rates of n2 fixation by unicellular diazotrophs in the oligotrophic pacific ocean, Nature, 430, 1027–1032, 2004.
Moore, J. K., Doney, S. C., and Lindsay, K.: Upper ocean ecosystem dynamics and iron cycling in a global three-dimensional model, Global Biogeochem. Cy., 18, GB4028, https://doi.org/10.1029/2004gb002220, 2004.
Moore, J. K. and Doney, S. C.: Iron availability limits the ocean nitrogen inventory stabilizing feedbacks between marine denitrification and nitrogen fixation, Global Biogeochem. Cy., 21, GB2001, https://doi.org/10.1029/2006gb002762, 2007.
Mulholland, M. R.: The fate of nitrogen fixed by diazotrophs in the ocean, Biogeosciences, 4, 37–51, https://doi.org/10.5194/bg-4-37-2007, 2007.
Mulholland, M. R., Ohki, K., and Capone, D. G.: Nutrient controls on nitrogen uptake and metabolism by natural populations and cultures of trichodesmium (cyanobacteria), J. Phycol., 37, 1001–1009, 2001.
Orr, J. C.: Ocean carbon-cycle model intercomparison project (ocmip): Pase 1 (1995–1997), GAIM Report, 7, 1999.
Pandey, K. D., Shukla, S. P., Shukla, P. N., Giri, D. D., Singh, J. S., Singh, P., and Kashyap, A. K.: Cyanobacteria in antarctica: Ecology, physiology and cold adaptation, Cellular and molecular biology (Noisy-le-Grand, France), 50, 575–584, 2004.
Robinson, R. S., Kienast, M., Luiza Albuquerque, A., Altabet, M., Contreras, S., De Pol Holz, R., Dubois, N., Francois, R., Galbraith, E., Hsu, T.-C., Ivanochko, T., Jaccard, S., Kao, S.-J., Kiefer, T., Kienast, S., Lehmann, M., Martinez, P., McCarthy, M., Möbius, J., Pedersen, T., Quan, T. M., Ryabenko, E., Schmittner, A., Schneider, R., Schneider-Mor, A., Shigemitsu, M., Sinclair, D., Somes, C., Studer, A., Thunell, R., and Yang, J.-Y.: A review of nitrogen isotopic alteration in marine sediments, Paleoceanography, 27, PA4203, https://doi.org/10.1029/2012pa002321, 2012.
Ryabenko, E., Kock, A., Bange, H. W., Altabet, M. A., and Wallace, D. W. R.: Contrasting biogeochemistry of nitrogen in the Atlantic and Pacific Oxygen Minimum Zones, Biogeosciences, 9, 203–215, https://doi.org/10.5194/bg-9-203-2012, 2012.
Sañudo-Wilhelmy, S. A., Tovar-Sanchez, A., Fu, F.-X., Capone, D. G., Carpenter, E. J., and Hutchins, D. A.: The impact of surface-adsorbed phosphorus on phytoplankton redfield stoichiometry, Nature, 432, 897–901, http://www.nature.com/nature/journal/v432/n7019/abs/nature03125.html - supplementary-information, 2004.
Schmittner, A., Oschlies, A., Giraud, X., Eby, M., and Simmons, H. L.: A global model of the marine ecosystem for long-term simulations: Sensitivity to ocean mixing buoyancy forcing, particle sinking, and dissolved organic matter cycling, Global Biogeochem. Cy., 19, GB3004, https://doi.org/10.1029/2004GB002283, 2005.
Schmittner, A., Oschlies, A., Matthews, H. D., and Galbraith, E. G.: Future changes in climate, ocean circulation, ecosystems, and biogeochemical cycling simulated for a buisness-as-usual CO2 emission scenario until year 4000 ad, Global Biogeochem. Cy., 22, GB1013, https://doi.org/10.1029/2007GB002953, 2008.
Seitzinger, S., Harrison, J. A., Böhlke, J. K., Bouwman, A. F., Lowrance, R., Peterson, B., Tobias, C., and Drecht, G. V.: Denitrification across landscapes and waterscapes: A synthesis, Ecol. Appl., 16, 2064–2090, https://doi.org/10.1890/1051-0761(2006)016[2064:DALAWA]2.0.CO;2, 2006.
Sigman, D. M., Altabet, M. A., McCorkle, D. C., Francois, R., and Fischer, G.: The d15n of nitrate in the southern ocean: Nitrogen cycling and circulation in the ocean interior, J. Geophys. Res., 105, 19599–19614, https://doi.org/10.1029/2000jc000265, 2000.
Simmons, H. L., Jayne, S. R., Laurent, L. C. S., and Weaver, A. J.: Tidally driven mixing in a numerical model of the ocean general circulation, Ocean Model., 6, 245–263, https://doi.org/10.1016/S1463-5003(03)00011-8, 2004.
Somes, C. J., Schmittner, A., and Altabet, M. A.: Nitrogen isotope simulations show the importance of atmospheric iron deposition for nitrogen fixation across the pacific ocean, Geophys. Res. Lett., 37, L23605, https://doi.org/10.1029/2010gl044537, 2010a.
Somes, C. J., Schmittner, A., Galbraith, E. D., Lehmann, M. F., Altabet, M. A., Montoya, J. P., Letelier, R. M., Mix, A. C., Bourbonnais, A., and Eby, M.: Simulating the global distribution of nitrogen isotopes in the ocean, Global Biogeochem. Cy., 24, GB4019, https://doi.org/10.1029/2009gb003767, 2010b.
Sterner, R. W. and Elser, J. J.: Ecological stoichiometry: The biology of elements from molecules to the biosphere, Princeton University Press, 429 pp., 2002.
Subramaniam, A., Mahaffey, C., Johns, W., and Mahowald, N.: Equatorial upwelling enhances nitrogen fixation in the atlantic ocean, Geophys. Res. Lett., 40, 1766–1771, https://doi.org/10.1002/grl.50250, 2013.
Tesdal, J.-E., Galbraith, E. D., and Kienast, M.: Nitrogen isotopes in bulk marine sediment: linking seafloor observations with subseafloor records, Biogeosciences, 10, 101–118, https://doi.org/10.5194/bg-10-101-2013, 2013.
Thamdrup, B. and Dalsgaard, T.: Production of n(2) through anaerobic ammonium oxidation coupled to nitrate reduction in marine sediments, Appl. Environ. Microb., 68, 1312–1318, 2002.
Voss, M., Dippner, J. W., and Montoya, J. P.: Nitrogen isotope patterns in the oxygen-deficient waters of the eastern tropical north pacific ocean, Deep-Sea Res. Pt. I, 48, 190–1921, 2001.
Ward, B. B., Devol, A. H., Rich, J. J., Chang, B. X., Bulow, S. E., Naik, H., Pratihary, A., and Jayakumar, A.: Denitrification as the dominant nitrogen loss process in the arabian sea, Nature, 461, 78–81, http://www.nature.com/nature/journal/v461/n7260/suppinfo/nature08276_S1.html, 2009.
Weaver, A. J., Eby, M., Wiebe, E. C., Bitz, C. M., Duffy, P. B., Ewen, T. L., Fanning, A. F., Holland, M. M., MacFadyen, A., Matthews, H. D., Meissner, K. J., Saenko, O., Schmittner, A., Wang, H., and Yoshimori, M.: The uvic earth system climate model: Model description, climatology, and applications to past, present and future climates, Atmos. Ocean, 39, 361–428, 2001.
Zehr, J. P.: Nitrogen fixation by marine cyanobacteria, Trends Microbiol., 19, 162–173, 2011.
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