Articles | Volume 12, issue 13
https://doi.org/10.5194/bg-12-4175-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-4175-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
14 Jul 2015
Research article |
| 14 Jul 2015
The oxygen isotope composition of phosphate released from phytic acid by the activity of wheat and Aspergillus niger phytase
C. von Sperber
CORRESPONDING AUTHOR
Institute of Agricultural Sciences, ETH Zurich, Eschikon 33, 8315 Lindau, Switzerland
Department of Biology, Stanford University, 473 Via Ortega, Y2E2 Building, Stanford, CA 94305-5020, USA
F. Tamburini
Institute of Agricultural Sciences, ETH Zurich, Eschikon 33, 8315 Lindau, Switzerland
B. Brunner
Department of Geosciences, University of Texas at El Paso, 500 W. University Ave, El Paso, TX 79902, USA
S. M. Bernasconi
Geological Institute, ETH Zurich, Sonnegstrasse 5, 8092 Zurich, Switzerland
E. Frossard
Institute of Agricultural Sciences, ETH Zurich, Eschikon 33, 8315 Lindau, Switzerland
Related authors
No articles found.
Alexander J. Clark, Ismael Torres-Romero, Madalina Jaggi, Stefano M. Bernasconi, and Heather M. Stoll
Clim. Past, 20, 2081–2101, https://doi.org/10.5194/cp-20-2081-2024, https://doi.org/10.5194/cp-20-2081-2024, 2024
Short summary
Short summary
Coccoliths are abundant in sediments across the world’s oceans, yet it is difficult to apply traditional carbon or oxygen isotope methodologies for temperature reconstructions. We show that our coccolith clumped isotope temperature calibration with well-constrained temperatures systematically differs from inorganic carbonate calibrations. We suggest the use of our well-constrained calibration for future coccolith carbonate temperature reconstructions.
Frank Hagedorn, Joesphine Imboden, Pavel Moiseev, Decai Gao, Emmanuel Frossard, Daniel Christen, Konstantin Gavazov, and Jasmin Fetzer
EGUsphere, https://doi.org/10.5194/egusphere-2024-2622, https://doi.org/10.5194/egusphere-2024-2622, 2024
Short summary
Short summary
At treeline, plant species change abruptly from low stature plants in tundra to trees in forests. Our study documents that from tundra towards forest, the litter layer gets strongly enriched in nutrients. We show that these litter quality changes alter nutrient processing by soil microbes and increase the nutrient release during decomposition in forest than in tundra. The associated improvement of nutrient availability in the forest potentially stimulates tree growth and treeline shifts.
Jasmine S. Berg, Paula C. Rodriguez, Cara Magnabosco, Longhui Deng, Stefano M. Bernasconi, Hendrik Vogel, Marina Morlock, and Mark A. Lever
EGUsphere, https://doi.org/10.5194/egusphere-2023-2102, https://doi.org/10.5194/egusphere-2023-2102, 2023
Preprint archived
Short summary
Short summary
The addition of sulfur to organic matter is generally thought to protect it from microbial degradation. We analyzed buried sulfur compounds in a 10-m sediment core representing the entire ~13,500 year history of an alpine lake. Surprisingly, organic sulfur and pyrite formed very rapidly and were characterized by very light isotope signatures that suggest active microbial sulfur cycling in the deep subsurface.
Tegawende Léa Jeanne Ilboudo, Lucien NGuessan Diby, Delwendé Innocent Kiba, Tor Gunnar Vågen, Leigh Ann Winowiecki, Hassan Bismarck Nacro, Johan Six, and Emmanuel Frossard
EGUsphere, https://doi.org/10.5194/egusphere-2022-209, https://doi.org/10.5194/egusphere-2022-209, 2022
Preprint withdrawn
Short summary
Short summary
Our results showed that at landscape level SOC stock variability was mainly explained by clay content. We found significant linear positive relationships between VC and SOC stocks for the land uses annual croplands, perennial croplands, grasslands and bushlands without soil depth restrictions until 110 cm. We concluded that in the forest-savanna transition zone, soil properties and topography determine land use, which in turn affects the stocks of SOC and TN and to some extent the VC stocks.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
Short summary
Short summary
As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Cinthya Esther Nava Fernandez, Tobias Braun, Bethany Fox, Adam Hartland, Ola Kwiecien, Chelsea Pederson, Sebastian Hoepker, Stefano Bernasconi, Madalina Jaggi, John Hellstrom, Fernando Gázquez, Amanda French, Norbert Marwan, Adrian Immenhauser, and Sebastian Franz Martin Breitenbach
Clim. Past Discuss., https://doi.org/10.5194/cp-2021-172, https://doi.org/10.5194/cp-2021-172, 2022
Manuscript not accepted for further review
Short summary
Short summary
We provide a ca. 1000 year long (6.4–5.4 ka BP) stalagmite-based reconstruction of mid-Holocene rainfall variability in the tropical western Pacific. The annually laminated multi-proxy (δ13C, δ18O, X/Ca, gray values) record comes from Niue island and informs on El Nino-Southern Oscillation and South Pacific Convergence Zone dynamics. Our data suggest that ENSO was active and influenced rainfall seasonality over the covered time interval. Rainfall seasonality was subdued during active ENSO phases
Zuzana Frkova, Chiara Pistocchi, Yuliya Vystavna, Katerina Capkova, Jiri Dolezal, and Federica Tamburini
SOIL, 8, 1–15, https://doi.org/10.5194/soil-8-1-2022, https://doi.org/10.5194/soil-8-1-2022, 2022
Short summary
Short summary
Phosphorus (P) is essential for life. We studied microbial processes driving the P cycle in soils developed on the same rock but with different ages (0–100 years) in a cold desert. Compared to previous studies under cold climate, we found much slower weathering of P-containing minerals of soil development, likely due to aridity. However, microbes dominate short-term dynamics and progressively redistribute P from the rock into more available forms, making it available for plants at later stages.
Luca Smeraglia, Nathan Looser, Olivier Fabbri, Flavien Choulet, Marcel Guillong, and Stefano M. Bernasconi
Solid Earth, 12, 2539–2551, https://doi.org/10.5194/se-12-2539-2021, https://doi.org/10.5194/se-12-2539-2021, 2021
Short summary
Short summary
In this paper, we dated fault movements at geological timescales which uplifted the sedimentary successions of the Jura Mountains from below the sea level up to Earth's surface. To do so, we applied the novel technique of U–Pb geochronology on calcite mineralizations that precipitated on fault surfaces during times of tectonic activity. Our results document a time frame of the tectonic evolution of the Jura Mountains and provide new insight into the broad geological history of the Western Alps.
Philipp Baumann, Juhwan Lee, Emmanuel Frossard, Laurie Paule Schönholzer, Lucien Diby, Valérie Kouamé Hgaza, Delwende Innocent Kiba, Andrew Sila, Keith Sheperd, and Johan Six
SOIL, 7, 717–731, https://doi.org/10.5194/soil-7-717-2021, https://doi.org/10.5194/soil-7-717-2021, 2021
Short summary
Short summary
This work delivers openly accessible and validated calibrations for diagnosing 26 soil properties based on mid-infrared spectroscopy. These were developed for four regions in Burkina Faso and Côte d'Ivoire, including 80 fields of smallholder farmers. The models can help to site-specifically and cost-efficiently monitor soil quality and fertility constraints to ameliorate soils and yields of yam or other staple crops in the four regions between the humid forest and the northern Guinean savanna.
Thomas J. Leutert, Sevasti Modestou, Stefano M. Bernasconi, and A. Nele Meckler
Clim. Past, 17, 2255–2271, https://doi.org/10.5194/cp-17-2255-2021, https://doi.org/10.5194/cp-17-2255-2021, 2021
Short summary
Short summary
The Miocene climatic optimum associated with high atmospheric CO2 levels (~17–14 Ma) was followed by a period of dramatic climate change. We present a clumped isotope-based bottom-water temperature record from the Southern Ocean covering this key climate transition. Our record reveals warm conditions and a substantial cooling preceding the main ice volume increase, possibly caused by thresholds involved in ice growth and/or regional effects at our study site.
Andre Baldermann, Oliver Wasser, Elshan Abdullayev, Stefano Bernasconi, Stefan Löhr, Klaus Wemmer, Werner E. Piller, Maxim Rudmin, and Sylvain Richoz
Clim. Past, 17, 1955–1972, https://doi.org/10.5194/cp-17-1955-2021, https://doi.org/10.5194/cp-17-1955-2021, 2021
Short summary
Short summary
We identified the provenance, (post)depositional history, weathering conditions and hydroclimate that formed the detrital and authigenic silicates and soil carbonates of the Valley of Lakes sediments in Central Asia during the Cenozoic (~34 to 21 Ma). Aridification pulses in continental Central Asia coincide with marine glaciation events and are caused by Cenozoic climate forcing and the exhumation of the Tian Shan, Hangay and Altai mountains, which reduced the moisture influx by westerly winds.
Annika Fiskal, Eva Anthamatten, Longhui Deng, Xingguo Han, Lorenzo Lagostina, Anja Michel, Rong Zhu, Nathalie Dubois, Carsten J. Schubert, Stefano M. Bernasconi, and Mark A. Lever
Biogeosciences, 18, 4369–4388, https://doi.org/10.5194/bg-18-4369-2021, https://doi.org/10.5194/bg-18-4369-2021, 2021
Short summary
Short summary
Microbially produced methane can serve as a carbon source for freshwater macrofauna most likely through grazing on methane-oxidizing bacteria. This study investigates the contributions of different carbon sources to macrofaunal biomass. Our data suggest that the average contribution of methane-derived carbon is similar between different fauna but overall remains low. This is further supported by the low abundance of methane-cycling microorganisms.
Alba Zappone, Antonio Pio Rinaldi, Melchior Grab, Quinn C. Wenning, Clément Roques, Claudio Madonna, Anne C. Obermann, Stefano M. Bernasconi, Matthias S. Brennwald, Rolf Kipfer, Florian Soom, Paul Cook, Yves Guglielmi, Christophe Nussbaum, Domenico Giardini, Marco Mazzotti, and Stefan Wiemer
Solid Earth, 12, 319–343, https://doi.org/10.5194/se-12-319-2021, https://doi.org/10.5194/se-12-319-2021, 2021
Short summary
Short summary
The success of the geological storage of carbon dioxide is linked to the availability at depth of a capable reservoir and an impermeable caprock. The sealing capacity of the caprock is a key parameter for long-term CO2 containment. Faults crosscutting the caprock might represent preferential pathways for CO2 to escape. A decameter-scale experiment on injection in a fault, monitored by an integrated network of multiparamerter sensors, sheds light on the mobility of fluids within the fault.
Jolanda E. Reusser, René Verel, Daniel Zindel, Emmanuel Frossard, and Timothy I. McLaren
Biogeosciences, 17, 5079–5095, https://doi.org/10.5194/bg-17-5079-2020, https://doi.org/10.5194/bg-17-5079-2020, 2020
Short summary
Short summary
Inositol phosphates (IPs) are a major pool of organic P in soil. However, information on their diversity and abundance in soil is limited. We isolated IPs from soil and characterised them using solution nuclear magnetic resonance (NMR) spectroscopy. For the first time, we provide direct spectroscopic evidence for the existence of a multitude of lower-order IPs in soil extracts previously not detected with NMR. Our findings will help provide new insight into the cycling of IPs in ecosystems.
Julian Helfenstein, Chiara Pistocchi, Astrid Oberson, Federica Tamburini, Daniel S. Goll, and Emmanuel Frossard
Biogeosciences, 17, 441–454, https://doi.org/10.5194/bg-17-441-2020, https://doi.org/10.5194/bg-17-441-2020, 2020
Short summary
Short summary
In this article we provide estimates of mean residence times of phosphorus in inorganic soil phosphorus pools. These values improve our understanding of the dynamics of phosphorus cycling and can be used to improve global land surface models.
Catharina Simone Nisbeth, Federica Tamburini, Jacob Kidmose, Søren Jessen, and David William O'Connell
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2019-469, https://doi.org/10.5194/hess-2019-469, 2019
Preprint withdrawn
Short summary
Short summary
Phosphorus contamination frequently causes eutrophication of freshwater lakes. However it is often difficult to establish the origin of the contaminating phosphorus. This study aims to contribute to the development and improvement of a method for tracing phosphorus in the freshwater environment, by using the oxygen-18 isotope of orthophosphate (δ18Op). The use of a coherent and common method across research groups may enable phosphorus tracing and better management of freshwater ecosystems.
Annika Fiskal, Longhui Deng, Anja Michel, Philip Eickenbusch, Xingguo Han, Lorenzo Lagostina, Rong Zhu, Michael Sander, Martin H. Schroth, Stefano M. Bernasconi, Nathalie Dubois, and Mark A. Lever
Biogeosciences, 16, 3725–3746, https://doi.org/10.5194/bg-16-3725-2019, https://doi.org/10.5194/bg-16-3725-2019, 2019
Maria Andrianaki, Juna Shrestha, Florian Kobierska, Nikolaos P. Nikolaidis, and Stefano M. Bernasconi
Hydrol. Earth Syst. Sci., 23, 3219–3232, https://doi.org/10.5194/hess-23-3219-2019, https://doi.org/10.5194/hess-23-3219-2019, 2019
Short summary
Short summary
We tested the performance of the SWAT hydrological model after being transferred from a small Alpine watershed to a greater area. We found that the performance of the model for the greater catchment was satisfactory and the climate change simulations gave insights into the impact of climate change on our site. Assessment tests are important in identifying the strengths and weaknesses of the models when they are applied under extreme conditions different to the ones that were calibrated.
Maximilian Rieder, Wencke Wegner, Monika Horschinegg, Stefanie Klackl, Nereo Preto, Anna Breda, Susanne Gier, Urs Klötzli, Stefano M. Bernasconi, Gernot Arp, and Patrick Meister
Solid Earth, 10, 1243–1267, https://doi.org/10.5194/se-10-1243-2019, https://doi.org/10.5194/se-10-1243-2019, 2019
Short summary
Short summary
The formation of dolomite (CaMg(CO3)2), an abundant mineral in Earth's geological record, is still incompletely understood. We studied dolomites embedded in a 100 m thick succession of coastal alluvial clays of Triassic age in the southern Alps. Observation by light microscopy and Sr isotopes suggests that dolomites may spontaneously from concentrated evaporating seawater, in coastal ephemeral lakes or tidal flats along the western margin of the Triassic Tethys sea.
Julian Helfenstein, Jannes Jegminat, Timothy I. McLaren, and Emmanuel Frossard
Biogeosciences, 15, 105–114, https://doi.org/10.5194/bg-15-105-2018, https://doi.org/10.5194/bg-15-105-2018, 2018
Short summary
Short summary
Soil solution phosphorus (P) turnover is essential for describing the bioavailability of this important nutrient. Here, we provide a derivation of calculating soil solution P turnover using parameters obtained from isotope exchange kinetic experiments. We then calculated and analyzed soil solution P turnover for 217 soils and for 18 long-term P fertilizer field experiments worldwide. Our study thus provides important insights on P dynamics in soils.
Emmanuel Frossard, Nina Buchmann, Else K. Bünemann, Delwende I. Kiba, François Lompo, Astrid Oberson, Federica Tamburini, and Ouakoltio Y. A. Traoré
SOIL, 2, 83–99, https://doi.org/10.5194/soil-2-83-2016, https://doi.org/10.5194/soil-2-83-2016, 2016
F. Kobierska, T. Jonas, J. W. Kirchner, and S. M. Bernasconi
Hydrol. Earth Syst. Sci., 19, 3681–3693, https://doi.org/10.5194/hess-19-3681-2015, https://doi.org/10.5194/hess-19-3681-2015, 2015
Related subject area
Biogeochemistry: Stable Isotopes & Other Tracers
Bias in calculating gross nitrification rates in forested catchments using the triple oxygen isotopic composition (Δ17O) of stream nitrate
Position-specific kinetic isotope effects for nitrous oxide: a new expansion of the Rayleigh model
Technical note: A Bayesian mixing model to unravel isotopic data and quantify trace gas production and consumption pathways for time series data – Time-resolved FRactionation And Mixing Evaluation (TimeFRAME)
No increase is detected and modeled for the seasonal cycle amplitude of δ13C of atmospheric carbon dioxide
Separating above-canopy CO2 and O2 measurements into their atmospheric and biospheric signatures
How long does carbon stay in a near-pristine central Amazon forest? An empirical estimate with radiocarbon
Climatic controls on leaf wax hydrogen isotope ratios in terrestrial and marine sediments along a hyperarid-to-humid gradient
Fractionation of stable carbon isotopes during microbial propionate consumption in anoxic rice paddy soils
Sources and sinks of carbonyl sulfide inferred from tower and mobile atmospheric observations in the Netherlands
Downpour dynamics: outsized impacts of storm events on unprocessed atmospheric nitrate export in an urban watershed
The hidden role of dissolved organic carbon in the biogeochemical cycle of carbon in modern redox-stratified lakes
Biogeochemical processes captured by carbon isotopes in redox-stratified water columns: a comparative study of four modern stratified lakes along an alkalinity gradient
Partitioning of carbon export in the euphotic zone of the oligotrophic South China Sea
Determination of respiration and photosynthesis fractionation factors for atmospheric dioxygen inferred from a vegetation–soil–atmosphere analogue of the terrestrial biosphere in closed chambers
Permafrost degradation and nitrogen cycling in Arctic rivers: insights from stable nitrogen isotope studies
Neodymium budget in the Mediterranean Sea: evaluating the role of atmospheric dusts using a high-resolution dynamical-biogeochemical model
Nitrate isotope investigations reveal future impacts of climate change on nitrogen inputs and cycling in Arctic fjords: Kongsfjorden and Rijpfjorden (Svalbard)
Mineralization of autochthonous particulate organic carbon is a fast channel of organic matter turnover in Germany's largest drinking water reservoir
Carbon isotopic ratios of modern C3 and C4 vegetation on the Indian peninsula and changes along the plant–soil–river continuum – implications for vegetation reconstructions
Controls on nitrite oxidation in the upper Southern Ocean: insights from winter kinetics experiments in the Indian sector
Tracing the source of nitrate in a forested stream showing elevated concentrations during storm events
Intra-skeletal variability in phosphate oxygen isotope composition reveals regional heterothermies in marine vertebrates
Isotopic differences in soil–plant–atmosphere continuum composition and control factors of different vegetation zones on the northern slope of the Qilian Mountains
An analysis of the variability in δ13C in macroalgae from the Gulf of California: indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation
Summertime productivity and carbon export potential in the Weddell Sea, with a focus on the waters adjacent to Larsen C Ice Shelf
Particulate biogenic barium tracer of mesopelagic carbon remineralization in the Mediterranean Sea (PEACETIME project)
Hydrogen and carbon isotope fractionation factors of aerobic methane oxidation in deep-sea water
Host-influenced geochemical signature in the parasitic foraminifera Hyrrokkin sarcophaga
Comparing modified substrate-induced respiration with selective inhibition (SIRIN) and N2O isotope approaches to estimate fungal contribution to denitrification in three arable soils under anoxic conditions
How are oxygen budgets influenced by dissolved iron and growth of oxygenic phototrophs in an iron-rich spring system? Initial results from the Espan Spring in Fürth, Germany
Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin
High-resolution 14C bomb peak dating and climate response analyses of subseasonal stable isotope signals in wood of the African baobab – a case study from Oman
Geographic variability in freshwater methane hydrogen isotope ratios and its implications for global isotopic source signatures
Seasonality of nitrogen sources, cycling, and loading in a New England river discerned from nitrate isotope ratios
Evaluating the response of δ13C in Haloxylon ammodendron, a dominant C4 species in Asian desert ecosystems, to water and nitrogen addition as well as the availability of its δ13C as an indicator of water use efficiency
Modern silicon dynamics of a small high-latitude subarctic lake
Radium-228-derived ocean mixing and trace element inputs in the South Atlantic
Nitrogen isotopic fractionations during nitric oxide production in an agricultural soil
Silicon uptake and isotope fractionation dynamics by crop species
Barium stable isotopes as a fingerprint of biological cycling in the Amazon River basin
Bottomland hardwood forest growth and stress response to hydroclimatic variation: evidence from dendrochronology and tree ring Δ13C values
N2O isotope approaches for source partitioning of N2O production and estimation of N2O reduction – validation with the 15N gas-flux method in laboratory and field studies
Technical note: Single-shell δ11B analysis of Cibicidoides wuellerstorfi using femtosecond laser ablation MC-ICPMS and secondary ion mass spectrometry
Biogeochemical evidence of anaerobic methane oxidation and anaerobic ammonium oxidation in a stratified lake using stable isotopes
Effects of 238U variability and physical transport on water column 234Th downward fluxes in the coastal upwelling system off Peru
Do degree and rate of silicate weathering depend on plant productivity?
Alpine Holocene tree-ring dataset: age-related trends in the stable isotopes of cellulose show species-specific patterns
Ideas and perspectives: The same carbon behaves like different elements – an insight into position-specific isotope distributions
Seasonal dynamics of the COS and CO2 exchange of a managed temperate grassland
Leaf-scale quantification of the effect of photosynthetic gas exchange on Δ17O of atmospheric CO2
Weitian Ding, Urumu Tsunogai, and Fumiko Nakagawa
Biogeosciences, 21, 4717–4722, https://doi.org/10.5194/bg-21-4717-2024, https://doi.org/10.5194/bg-21-4717-2024, 2024
Short summary
Short summary
Past studies have used the Δ17O of stream nitrate to estimate the gross nitrification rates (GNRs) in each forested catchment by approximating the Δ17O value of soil nitrate to be equal to that of stream nitrate. Based on inference and calculation of measured data, we found that this approximation resulted in an overestimated GNR. Therefore, it is essential to clarify and verify the Δ17O NO3− values in forested soils and streams before applying the Δ17O values of stream NO3− to GNR estimation.
Elise D. Rivett, Wenjuan Ma, Nathaniel E. Ostrom, and Eric L. Hegg
Biogeosciences, 21, 4549–4567, https://doi.org/10.5194/bg-21-4549-2024, https://doi.org/10.5194/bg-21-4549-2024, 2024
Short summary
Short summary
Many different processes produce nitrous oxide (N2O), a potent greenhouse gas. Measuring the ratio of heavy and light nitrogen isotopes (15N/14N) for the non-exchangeable central and outer N atoms of N2O helps to distinguish sources of N2O. To accurately calculate the position-specific isotopic preference, we developed an expansion of the widely used Rayleigh model. Application of our new model to simulated and experimental data demonstrates its improved accuracy for analyzing N2O synthesis.
Eliza Harris, Philipp Fischer, Maciej P. Lewicki, Dominika Lewicka-Szczebak, Stephen J. Harris, and Fernando Perez-Cruz
Biogeosciences, 21, 3641–3663, https://doi.org/10.5194/bg-21-3641-2024, https://doi.org/10.5194/bg-21-3641-2024, 2024
Short summary
Short summary
Greenhouse gases are produced and consumed via a number of pathways. Quantifying these pathways helps reduce the climate and environmental footprint of anthropogenic activities. The contribution of the pathways can be estimated from the isotopic composition, which acts as a fingerprint for these pathways. We have developed the Time-resolved FRactionation And Mixing Evaluation (TimeFRAME) model to simplify interpretation and estimate the contribution of different pathways and their uncertainty.
Fortunat Joos, Sebastian Lienert, and Sönke Zaehle
EGUsphere, https://doi.org/10.5194/egusphere-2024-1972, https://doi.org/10.5194/egusphere-2024-1972, 2024
Short summary
Short summary
How plants regulate their exchange of CO2 and water with the atmosphere under global warming is critical for their carbon uptake and their cooling influence. We analyze the isotope ratio of atmospheric CO2 and detect no significant decadal trends in the seasonal cycle amplitude. The data are consistent with the regulation towards leaf CO2 and intrinsic water use efficiency to grow proportionally to atmospheric CO2, in contrast to recent suggestions of downregulation of CO2 and water fluxes.
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
Biogeosciences, 21, 3015–3039, https://doi.org/10.5194/bg-21-3015-2024, https://doi.org/10.5194/bg-21-3015-2024, 2024
Short summary
Short summary
The ratio between atmospheric O2 and CO2 can be used to characterize the carbon balance at the surface. By combining a model and observations from the Hyytiälä forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange because large-scale processes such as entrainment confound this signal. We therefore recommend always using multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Ingrid Chanca, Ingeborg Levin, Susan Trumbore, Kita Macario, Jost Lavric, Carlos Alberto Quesada, Alessandro Carioca de Araújo, Cléo Quaresma Dias Júnior, Hella van Asperen, Samuel Hammer, and Carlos Sierra
EGUsphere, https://doi.org/10.5194/egusphere-2024-883, https://doi.org/10.5194/egusphere-2024-883, 2024
Short summary
Short summary
Assessing the net carbon (C) budget of the Amazon entails considering the magnitude and timing of C absorption and losses through respiration (transit time of C). Radiocarbon-based estimates of the transit time of C in the Amazon Tall Tower Observatory (ATTO) suggest a doubling of the transit time from 6 ± 2 years and 18 ± 5 years (October 2019 and December 2021, respectively). This variability indicates that only a fraction of newly fixed C can be stored for decades or longer.
Nestor Gaviria-Lugo, Charlotte Läuchli, Hella Wittmann, Anne Bernhardt, Patrick Frings, Mahyar Mohtadi, Oliver Rach, and Dirk Sachse
Biogeosciences, 20, 4433–4453, https://doi.org/10.5194/bg-20-4433-2023, https://doi.org/10.5194/bg-20-4433-2023, 2023
Short summary
Short summary
We analyzed how leaf wax hydrogen isotopes in continental and marine sediments respond to climate along one of the strongest aridity gradients in the world, from hyperarid to humid, along Chile. We found that under extreme aridity, the relationship between hydrogen isotopes in waxes and climate is non-linear, suggesting that we should be careful when reconstructing past hydrological changes using leaf wax hydrogen isotopes so as to avoid overestimating how much the climate has changed.
Ralf Conrad and Peter Claus
Biogeosciences, 20, 3625–3635, https://doi.org/10.5194/bg-20-3625-2023, https://doi.org/10.5194/bg-20-3625-2023, 2023
Short summary
Short summary
Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Propionate is an important intermediate. In the presence of sulfate, it was degraded by Syntrophobacter species via acetate to CO2. In the absence of sulfate, it was mainly consumed by Smithella and methanogenic archaeal species via butyrate and acetate to CH4. However, stable carbon isotope fractionation during the degradation process was quite small.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Joel T. Bostic, David M. Nelson, and Keith N. Eshleman
Biogeosciences, 20, 2485–2498, https://doi.org/10.5194/bg-20-2485-2023, https://doi.org/10.5194/bg-20-2485-2023, 2023
Short summary
Short summary
Land-use changes can affect water quality. We used tracers of pollution sources and water flow paths to show that an urban watershed exports variable sources during storm events relative to a less developed watershed. Our results imply that changing precipitation patterns combined with increasing urbanization may alter sources of pollution in the future.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2405–2424, https://doi.org/10.5194/bg-20-2405-2023, https://doi.org/10.5194/bg-20-2405-2023, 2023
Short summary
Short summary
Dissolved organic carbon (DOC) is a reservoir of prime importance in the C cycle of both continental and marine systems. It has also been suggested to influence the past Earth climate but is still poorly characterized in ancient-Earth-like environments. In this paper we show how DOC analyses from modern redox-stratified lakes can evidence specific metabolic reactions and environmental factors and how these can help us to interpret the C cycle of specific periods in the Earth's past.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2347–2367, https://doi.org/10.5194/bg-20-2347-2023, https://doi.org/10.5194/bg-20-2347-2023, 2023
Short summary
Short summary
We describe the C cycle of four modern stratified water bodies from Mexico, a necessary step to better understand the C cycle of primitive-Earth-like environments, which were dominated by these kinds of conditions. We highlight the importance of local external factors on the C cycle of these systems. Notably, they influence the sensitivity of the carbonate record to environmental changes. We also show the strong C-cycle variability among these lakes and their organic C sediment record.
Yifan Ma, Kuanbo Zhou, Weifang Chen, Junhui Chen, Jin-Yu Terence Yang, and Minhan Dai
Biogeosciences, 20, 2013–2030, https://doi.org/10.5194/bg-20-2013-2023, https://doi.org/10.5194/bg-20-2013-2023, 2023
Short summary
Short summary
We distinguished particulate organic carbon (POC) export fluxes out of the nutrient-depleted layer (NDL) and the euphotic zone. The amount of POC export flux at the NDL base suggests that the NDL could be a hotspot of particle export. The substantial POC export flux at the NDL base challenges traditional concepts that the NDL was limited in terms of POC export. The dominant nutrient source for POC export fluxes should be subsurface nutrients, which was determined by 15N isotopic mass balance.
Clémence Paul, Clément Piel, Joana Sauze, Nicolas Pasquier, Frédéric Prié, Sébastien Devidal, Roxanne Jacob, Arnaud Dapoigny, Olivier Jossoud, Alexandru Milcu, and Amaëlle Landais
Biogeosciences, 20, 1047–1062, https://doi.org/10.5194/bg-20-1047-2023, https://doi.org/10.5194/bg-20-1047-2023, 2023
Short summary
Short summary
To improve the interpretation of the δ18Oatm and Δ17O of O2 in air bubbles in ice cores, we need to better quantify the oxygen fractionation coefficients associated with biological processes. We performed a simplified analogue of the terrestrial biosphere in a closed chamber. We found a respiration fractionation in agreement with the previous estimates at the microorganism scale, and a terrestrial photosynthetic fractionation was found. This has an impact on the estimation of the Dole effect.
Adam Francis, Raja S. Ganeshram, Robyn E. Tuerena, Robert G. M. Spencer, Robert M. Holmes, Jennifer A. Rogers, and Claire Mahaffey
Biogeosciences, 20, 365–382, https://doi.org/10.5194/bg-20-365-2023, https://doi.org/10.5194/bg-20-365-2023, 2023
Short summary
Short summary
Climate change is causing extensive permafrost degradation and nutrient releases into rivers with great ecological impacts on the Arctic Ocean. We focused on nitrogen (N) release from this degradation and associated cycling using N isotopes, an understudied area. Many N species are released at degradation sites with exchanges between species. N inputs from permafrost degradation and seasonal river N trends were identified using isotopes, helping to predict climate change impacts.
Mohamed Ayache, Jean-Claude Dutay, Kazuyo Tachikawa, Thomas Arsouze, and Catherine Jeandel
Biogeosciences, 20, 205–227, https://doi.org/10.5194/bg-20-205-2023, https://doi.org/10.5194/bg-20-205-2023, 2023
Short summary
Short summary
The neodymium (Nd) is one of the most useful tracers to fingerprint water mass provenance. However, the use of Nd is hampered by the lack of adequate quantification of the external sources. Here, we present the first simulation of dissolved Nd concentration and Nd isotopic composition in the Mediterranean Sea using a high-resolution model. We aim to better understand how the various external sources affect the Nd cycle and particularly assess how it is impacted by atmospheric inputs.
Marta Santos-Garcia, Raja S. Ganeshram, Robyn E. Tuerena, Margot C. F. Debyser, Katrine Husum, Philipp Assmy, and Haakon Hop
Biogeosciences, 19, 5973–6002, https://doi.org/10.5194/bg-19-5973-2022, https://doi.org/10.5194/bg-19-5973-2022, 2022
Short summary
Short summary
Terrestrial sources of nitrate are important contributors to the nutrient pool in the fjords of Kongsfjorden and Rijpfjorden in Svalbard during the summer, and they sustain most of the fjord primary productivity. Ongoing tidewater glacier retreat is postulated to favour light limitation and less dynamic circulation in fjords. This is suggested to encourage the export of nutrients to the middle and outer part of the fjord system, which may enhance primary production within and in offshore areas.
Marlene Dordoni, Michael Seewald, Karsten Rinke, Kurt Friese, Robert van Geldern, Jakob Schmidmeier, and Johannes A. C. Barth
Biogeosciences, 19, 5343–5355, https://doi.org/10.5194/bg-19-5343-2022, https://doi.org/10.5194/bg-19-5343-2022, 2022
Short summary
Short summary
Organic matter (OM) turnover into dissolved inorganic carbon (DIC) was investigated by means of carbon isotope mass balances in Germany's largest water reservoir. This includes a metalimnetic oxygen minimum (MOM). Autochthonous particulate organic carbon (POC) was the main contributor to DIC, with rates that were highest for the MOM. Generally low turnover rates outline the environmental fragility of this water body in the case that OM loads increase due to storm events or land use changes.
Frédérique M. S. A. Kirkels, Hugo J. de Boer, Paulina Concha Hernández, Chris R. T. Martes, Marcel T. J. van der Meer, Sayak Basu, Muhammed O. Usman, and Francien Peterse
Biogeosciences, 19, 4107–4127, https://doi.org/10.5194/bg-19-4107-2022, https://doi.org/10.5194/bg-19-4107-2022, 2022
Short summary
Short summary
The distinct carbon isotopic values of C3 and C4 plants are widely used to reconstruct past hydroclimate, where more C3 plants reflect wetter and C4 plants drier conditions. Here we examine the impact of regional hydroclimatic conditions on plant isotopic values in the Godavari River basin, India. We find that it is crucial to identify regional plant isotopic values and consider drought stress, which introduces a bias in C3 / C4 plant estimates and associated hydroclimate reconstructions.
Mhlangabezi Mdutyana, Tanya Marshall, Xin Sun, Jessica M. Burger, Sandy J. Thomalla, Bess B. Ward, and Sarah E. Fawcett
Biogeosciences, 19, 3425–3444, https://doi.org/10.5194/bg-19-3425-2022, https://doi.org/10.5194/bg-19-3425-2022, 2022
Short summary
Short summary
Nitrite-oxidizing bacteria in the winter Southern Ocean show a high affinity for nitrite but require a minimum (i.e., "threshold") concentration before they increase their rates of nitrite oxidation significantly. The classic Michaelis–Menten model thus cannot be used to derive the kinetic parameters, so a modified equation was employed that also yields the threshold nitrite concentration. Dissolved iron availability may play an important role in limiting nitrite oxidation.
Weitian Ding, Urumu Tsunogai, Fumiko Nakagawa, Takashi Sambuichi, Hiroyuki Sase, Masayuki Morohashi, and Hiroki Yotsuyanagi
Biogeosciences, 19, 3247–3261, https://doi.org/10.5194/bg-19-3247-2022, https://doi.org/10.5194/bg-19-3247-2022, 2022
Short summary
Short summary
Excessive leaching of nitrate from forested catchments during storm events degrades water quality and causes eutrophication in downstream areas. Thus, tracing the source of nitrate increase during storm events in forested streams is important for sustainable forest management. Based on the isotopic compositions of stream nitrate, including Δ17O, this study clarifies that the source of stream nitrate increase during storm events was soil nitrate in the riparian zone.
Nicolas Séon, Romain Amiot, Guillaume Suan, Christophe Lécuyer, François Fourel, Fabien Demaret, Arnauld Vinçon-Laugier, Sylvain Charbonnier, and Peggy Vincent
Biogeosciences, 19, 2671–2681, https://doi.org/10.5194/bg-19-2671-2022, https://doi.org/10.5194/bg-19-2671-2022, 2022
Short summary
Short summary
We analysed the oxygen isotope composition of bones and teeth of four marine species possessing regional heterothermies. We observed a consistent link between oxygen isotope composition and temperature heterogeneities recorded by classical methods. This opens up new perspectives on the determination of the thermoregulatory strategies of extant marine vertebrates where conventional methods are difficult to apply, but also allows us to investigate thermophysiologies of extinct vertebrates.
Yuwei Liu, Guofeng Zhu, Zhuanxia Zhang, Zhigang Sun, Leilei Yong, Liyuan Sang, Lei Wang, and Kailiang Zhao
Biogeosciences, 19, 877–889, https://doi.org/10.5194/bg-19-877-2022, https://doi.org/10.5194/bg-19-877-2022, 2022
Short summary
Short summary
We took the water cycle process of soil–plant–atmospheric precipitation as the research objective. In the water cycle of soil–plant–atmospheric precipitation, precipitation plays the main controlling role. The main source of replenishment for alpine meadow plants is precipitation and alpine meltwater; the main source of replenishment for forest plants is soil water; and the plants in the arid foothills mainly use groundwater.
Roberto Velázquez-Ochoa, María Julia Ochoa-Izaguirre, and Martín Federico Soto-Jiménez
Biogeosciences, 19, 1–27, https://doi.org/10.5194/bg-19-1-2022, https://doi.org/10.5194/bg-19-1-2022, 2022
Short summary
Short summary
Our research is the first approximation to understand the δ13C macroalgal variability in one of the most diverse marine ecosystems in the world, the Gulf of California. The life-form is the principal cause of δ13C macroalgal variability, mainly taxonomy. However, changes in habitat characteristics and environmental conditions also influence the δ13C macroalgal variability. The δ13C macroalgae is indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation.
Raquel F. Flynn, Thomas G. Bornman, Jessica M. Burger, Shantelle Smith, Kurt A. M. Spence, and Sarah E. Fawcett
Biogeosciences, 18, 6031–6059, https://doi.org/10.5194/bg-18-6031-2021, https://doi.org/10.5194/bg-18-6031-2021, 2021
Short summary
Short summary
Biological activity in the shallow Weddell Sea affects the biogeochemistry of recently formed deep waters. To investigate the drivers of carbon and nutrient export, we measured rates of primary production and nitrogen uptake, characterized the phytoplankton community, and estimated nutrient depletion ratios across the under-sampled western Weddell Sea in mid-summer. Carbon export was highest at the ice shelves and was determined by a combination of physical, chemical, and biological factors.
Stéphanie H. M. Jacquet, Christian Tamburini, Marc Garel, Aurélie Dufour, France Van Vambeke, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 5891–5902, https://doi.org/10.5194/bg-18-5891-2021, https://doi.org/10.5194/bg-18-5891-2021, 2021
Short summary
Short summary
We compared carbon remineralization rates (MRs) in the western and central Mediterranean Sea in late spring during the PEACETIME cruise, as assessed using the barium tracer. We reported higher and deeper (up to 1000 m depth) MRs in the western basin, potentially sustained by an additional particle export event driven by deep convection. The central basin is the site of a mosaic of blooming and non-blooming water masses and showed lower MRs that were restricted to the upper mesopelagic layer.
Shinsuke Kawagucci, Yohei Matsui, Akiko Makabe, Tatsuhiro Fukuba, Yuji Onishi, Takuro Nunoura, and Taichi Yokokawa
Biogeosciences, 18, 5351–5362, https://doi.org/10.5194/bg-18-5351-2021, https://doi.org/10.5194/bg-18-5351-2021, 2021
Short summary
Short summary
Hydrogen and carbon isotope ratios of methane as well as the relevant biogeochemical parameters and microbial community compositions in hydrothermal plumes in the Okinawa Trough were observed. We succeeded in simultaneously determining hydrogen and carbon isotope fractionation factors associated with aerobic oxidation of methane in seawater (εH = 49.4 ± 5.0 ‰, εC = 5.2 ± 0.4 ‰) – the former being the first of its kind ever reported.
Nicolai Schleinkofer, David Evans, Max Wisshak, Janina Vanessa Büscher, Jens Fiebig, André Freiwald, Sven Härter, Horst R. Marschall, Silke Voigt, and Jacek Raddatz
Biogeosciences, 18, 4733–4753, https://doi.org/10.5194/bg-18-4733-2021, https://doi.org/10.5194/bg-18-4733-2021, 2021
Short summary
Short summary
We have measured the chemical composition of the carbonate shells of the parasitic foraminifera Hyrrokkin sarcophaga in order to test if it is influenced by the host organism (bivalve or coral). We find that both the chemical and isotopic composition is influenced by the host organism. For example strontium is enriched in foraminifera that grew on corals, whose skeleton is built from aragonite, which is naturally enriched in strontium compared to the bivalves' calcite shell.
Lena Rohe, Traute-Heidi Anderson, Heinz Flessa, Anette Goeske, Dominika Lewicka-Szczebak, Nicole Wrage-Mönnig, and Reinhard Well
Biogeosciences, 18, 4629–4650, https://doi.org/10.5194/bg-18-4629-2021, https://doi.org/10.5194/bg-18-4629-2021, 2021
Short summary
Short summary
This is the first experimental setup combining a complex set of methods (microbial inhibitors and isotopic approaches) to differentiate between N2O produced by fungi or bacteria during denitrification in three soils. Quantifying the fungal fraction with inhibitors was not successful due to large amounts of uninhibited N2O production. All successful methods suggested a small or missing fungal contribution. Artefacts occurring with microbial inhibition to determine N2O fluxes are discussed.
Inga Köhler, Raul E. Martinez, David Piatka, Achim J. Herrmann, Arianna Gallo, Michelle M. Gehringer, and Johannes A. C. Barth
Biogeosciences, 18, 4535–4548, https://doi.org/10.5194/bg-18-4535-2021, https://doi.org/10.5194/bg-18-4535-2021, 2021
Short summary
Short summary
We investigated how high Fe(II) levels influence the O2 budget of a circum-neutral Fe(II)-rich spring and if a combined study of dissolved O (DO) and its isotopic composition can help assess this effect. We showed that dissolved Fe(II) can exert strong effects on the δ18ODO even though a constant supply of atmospheric O2 occurs. In the presence of photosynthesis, direct effects of Fe oxidation become masked. Critical Fe(II) concentrations indirectly control the DO by enhancing photosynthesis.
Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast
Biogeosciences, 18, 4491–4510, https://doi.org/10.5194/bg-18-4491-2021, https://doi.org/10.5194/bg-18-4491-2021, 2021
Short summary
Short summary
Pacific water flowing eastward through the Canadian Arctic plays an important role in redistributing nutrients to the northwest Atlantic Ocean. Using samples collected from northern Baffin Bay to the southern Labrador Shelf, we show that stable isotopic ratios in seawater nitrate reflect the fraction of Pacific to Atlantic water. These results provide a new framework for interpreting patterns of nitrogen isotopic variability recorded in modern and archival organic materials in the region.
Franziska Slotta, Lukas Wacker, Frank Riedel, Karl-Uwe Heußner, Kai Hartmann, and Gerhard Helle
Biogeosciences, 18, 3539–3564, https://doi.org/10.5194/bg-18-3539-2021, https://doi.org/10.5194/bg-18-3539-2021, 2021
Short summary
Short summary
The African baobab is a challenging climate and environmental archive for its semi-arid habitat due to dating uncertainties and parenchyma-rich wood anatomy. Annually resolved F14C data of tree-ring cellulose (1941–2005) from a tree in Oman show the annual character of the baobab’s growth rings but were up to 8.8 % lower than expected for 1964–1967. Subseasonal δ13C and δ18O patterns reveal years with low average monsoon rain as well as heavy rainfall events from pre-monsoonal cyclones.
Peter M. J. Douglas, Emerald Stratigopoulos, Sanga Park, and Dawson Phan
Biogeosciences, 18, 3505–3527, https://doi.org/10.5194/bg-18-3505-2021, https://doi.org/10.5194/bg-18-3505-2021, 2021
Short summary
Short summary
Hydrogen isotopes could be a useful tool to help resolve the geographic distribution of methane emissions from freshwater environments. We analyzed an expanded global dataset of freshwater methane hydrogen isotope ratios and found significant geographic variation linked to water isotopic composition. This geographic variability could be used to resolve changing methane fluxes from freshwater environments and provide more accurate estimates of the relative balance of global methane sources.
Veronica R. Rollinson, Julie Granger, Sydney C. Clark, Mackenzie L. Blanusa, Claudia P. Koerting, Jamie M. P. Vaudrey, Lija A. Treibergs, Holly C. Westbrook, Catherine M. Matassa, Meredith G. Hastings, and Craig R. Tobias
Biogeosciences, 18, 3421–3444, https://doi.org/10.5194/bg-18-3421-2021, https://doi.org/10.5194/bg-18-3421-2021, 2021
Short summary
Short summary
We measured nutrients and the naturally occurring nitrogen (N) and oxygen (O) stable isotope ratios of nitrate discharged from a New England river over an annual cycle, to monitor N loading and identify dominant sources from the watershed. We uncovered a seasonality to loading and sources of N from the watershed. Seasonality in the nitrate isotope ratios also informed on N cycling, conforming to theoretical expectations of riverine nutrient cycling.
Zixun Chen, Xuejun Liu, Xiaoqing Cui, Yaowen Han, Guoan Wang, and Jiazhu Li
Biogeosciences, 18, 2859–2870, https://doi.org/10.5194/bg-18-2859-2021, https://doi.org/10.5194/bg-18-2859-2021, 2021
Short summary
Short summary
δ13C in plants is a sensitive long-term indicator of physiological acclimatization. The present study suggests that precipitation change and increasing atmospheric N deposition have little impact on δ13C of H. ammodendron, a dominant plant in central Asian deserts, but affect its gas exchange. In addition, this study shows that δ13C of H. ammodendron could not indicate its water use efficiency (WUE), suggesting that whether δ13C of C4 plants indicates WUE is species-specific.
Petra Zahajská, Carolina Olid, Johanna Stadmark, Sherilyn C. Fritz, Sophie Opfergelt, and Daniel J. Conley
Biogeosciences, 18, 2325–2345, https://doi.org/10.5194/bg-18-2325-2021, https://doi.org/10.5194/bg-18-2325-2021, 2021
Short summary
Short summary
The drivers of high accumulation of single-cell siliceous algae (diatoms) in a high-latitude lake have not been fully characterized before. We studied silicon cycling of the lake through water, radon, silicon, and stable silicon isotope balances. Results showed that groundwater brings 3 times more water and dissolved silica than the stream inlet. We demonstrate that groundwater discharge and low sediment deposition have driven the high diatom accumulation in the studied lake in the past century.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671, https://doi.org/10.5194/bg-18-1645-2021, https://doi.org/10.5194/bg-18-1645-2021, 2021
Short summary
Short summary
The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Zhongjie Yu and Emily M. Elliott
Biogeosciences, 18, 805–829, https://doi.org/10.5194/bg-18-805-2021, https://doi.org/10.5194/bg-18-805-2021, 2021
Short summary
Short summary
In this study, we demonstrated distinct nitrogen isotope effects for nitric oxide (NO) production from major microbial and chemical NO sources in an agricultural soil. These results highlight characteristic bond-forming and breaking mechanisms associated with microbial and chemical NO production and implicate that simultaneous isotopic analyses of NO and nitrous oxide (N2O) can lead to unprecedented insights into the sources and processes controlling NO and N2O emissions from agricultural soils.
Daniel A. Frick, Rainer Remus, Michael Sommer, Jürgen Augustin, Danuta Kaczorek, and Friedhelm von Blanckenburg
Biogeosciences, 17, 6475–6490, https://doi.org/10.5194/bg-17-6475-2020, https://doi.org/10.5194/bg-17-6475-2020, 2020
Short summary
Short summary
Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Quentin Charbonnier, Julien Bouchez, Jérôme Gaillardet, and Éric Gayer
Biogeosciences, 17, 5989–6015, https://doi.org/10.5194/bg-17-5989-2020, https://doi.org/10.5194/bg-17-5989-2020, 2020
Short summary
Short summary
The abundance and isotope composition of the trace metal barium (Ba) allows us to track and quantify nutrient cycling throughout the Amazon Basin. In particular, we show that the Ba biological fingerprint evolves from that of a strong net nutrient uptake in the mountainous area of the Andes towards efficient nutrient recycling on the plains of the Lower Amazon. Our study highlights the fact that the geochemical signature of rock-derived nutrients transported by the Amazon is scarred by life.
Ajinkya G. Deshpande, Thomas W. Boutton, Ayumi Hyodo, Charles W. Lafon, and Georgianne W. Moore
Biogeosciences, 17, 5639–5653, https://doi.org/10.5194/bg-17-5639-2020, https://doi.org/10.5194/bg-17-5639-2020, 2020
Short summary
Short summary
Wetland forests in the southern USA are threatened by changing climate and human-induced pressures. We used tree ring widths and C isotopes as indicators of forest growth and physiological stress, respectively, and compared these to past climate data. We observed that vegetation growing in the drier patches is susceptible to stress, while vegetation growth and physiology in wetter patches is less sensitive to unfavorable environmental conditions, highlighting the importance of optimal wetness.
Dominika Lewicka-Szczebak, Maciej Piotr Lewicki, and Reinhard Well
Biogeosciences, 17, 5513–5537, https://doi.org/10.5194/bg-17-5513-2020, https://doi.org/10.5194/bg-17-5513-2020, 2020
Short summary
Short summary
We present the first validation of N2O isotopic approaches for estimating N2O source pathways and N2O reduction. These approaches are widely used for tracing soil nitrogen cycling, but the results of these estimations are very uncertain. Here we report the results from parallel treatments allowing for precise validation of these approaches, and we propose the best strategies for results interpretation, including the new idea of an isotope model integrating three isotopic signatures of N2O.
Markus Raitzsch, Claire Rollion-Bard, Ingo Horn, Grit Steinhoefel, Albert Benthien, Klaus-Uwe Richter, Matthieu Buisson, Pascale Louvat, and Jelle Bijma
Biogeosciences, 17, 5365–5375, https://doi.org/10.5194/bg-17-5365-2020, https://doi.org/10.5194/bg-17-5365-2020, 2020
Short summary
Short summary
The isotopic composition of boron in carbonate shells of marine unicellular organisms is a popular tool to estimate seawater pH. Usually, many shells need to be dissolved and measured for boron isotopes, but the information on their spatial distribution is lost. Here, we investigate two techniques that allow for measuring boron isotopes within single shells and show that they yield robust mean values but provide additional information on the heterogeneity within and between single shells.
Florian Einsiedl, Anja Wunderlich, Mathieu Sebilo, Ömer K. Coskun, William D. Orsi, and Bernhard Mayer
Biogeosciences, 17, 5149–5161, https://doi.org/10.5194/bg-17-5149-2020, https://doi.org/10.5194/bg-17-5149-2020, 2020
Short summary
Short summary
Nitrate pollution of freshwaters and methane emissions into the atmosphere are crucial factors in deteriorating the quality of drinking water and in contributing to global climate change. Here, we report vertical concentration and stable isotope profiles of CH4, NO3-, NO2-, and NH4+ in the water column of Fohnsee (southern Bavaria, Germany) that may indicate linkages between nitrate-dependent anaerobic methane oxidation and the anaerobic oxidation of ammonium.
Ruifang C. Xie, Frédéric A. C. Le Moigne, Insa Rapp, Jan Lüdke, Beat Gasser, Marcus Dengler, Volker Liebetrau, and Eric P. Achterberg
Biogeosciences, 17, 4919–4936, https://doi.org/10.5194/bg-17-4919-2020, https://doi.org/10.5194/bg-17-4919-2020, 2020
Short summary
Short summary
Thorium-234 (234Th) is widely used to study carbon fluxes from the surface ocean to depth. But few studies stress the relevance of oceanic advection and diffusion on the downward 234Th fluxes in nearshore environments. Our study in offshore Peru showed strong temporal variations in both the importance of physical processes on 234Th flux estimates and the oceanic residence time of 234Th, whereas salinity-derived seawater 238U activities accounted for up to 40 % errors in 234Th flux estimates.
Ralf A. Oeser and Friedhelm von Blanckenburg
Biogeosciences, 17, 4883–4917, https://doi.org/10.5194/bg-17-4883-2020, https://doi.org/10.5194/bg-17-4883-2020, 2020
Short summary
Short summary
We present a novel strategy to decipher the relative impact of biogenic and abiotic drivers of weathering. We parameterized the nutrient fluxes in four ecosystems along a climate and vegetation gradient situated on the Chilean Coastal Cordillera. We investigated how nutrient demand by plants drives weathering. We found that the increase in biomass nutrient demand is accommodated by faster nutrient recycling rather than an increase in the weathering–release rates.
Tito Arosio, Malin M. Ziehmer, Kurt Nicolussi, Christian Schlüchter, and Markus Leuenberger
Biogeosciences, 17, 4871–4882, https://doi.org/10.5194/bg-17-4871-2020, https://doi.org/10.5194/bg-17-4871-2020, 2020
Short summary
Short summary
Stable isotopes in tree-ring cellulose are tools for climatic reconstructions, but interpretation is challenging due to nonclimate trends. We analyzed the tree-age trends in tree-ring isotopes of deciduous larch and evergreen cembran pine. Samples covering the whole Holocene were collected at the tree line in the Alps. For cambial ages over 100 years, we prove the absence of age trends in δD, δ18O, and δ13C for both species. For lower cambial ages, trends differ for each isotope and species.
Yuyang He, Xiaobin Cao, and Huiming Bao
Biogeosciences, 17, 4785–4795, https://doi.org/10.5194/bg-17-4785-2020, https://doi.org/10.5194/bg-17-4785-2020, 2020
Short summary
Short summary
Different carbon sites in a large organic molecule have different isotope compositions. Different carbon sites may not have the chance to exchange isotopes at all. The lack of appreciation of this notion might be blamed for an unsettled debate on the thermodynamic state of an organism. Here we demonstrate using minerals, N2O, and acetic acid that the dearth of exchange among different carbon sites renders them as independent as if they were different elements in organic molecules.
Felix M. Spielmann, Albin Hammerle, Florian Kitz, Katharina Gerdel, and Georg Wohlfahrt
Biogeosciences, 17, 4281–4295, https://doi.org/10.5194/bg-17-4281-2020, https://doi.org/10.5194/bg-17-4281-2020, 2020
Short summary
Short summary
Carbonyl sulfide (COS) can be used as a proxy for plant photosynthesis on an ecosystem scale. However, the relationships between COS and CO2 fluxes and their dependence on daily to seasonal changes in environmental drivers are still poorly understood. We examined COS and CO2 ecosystem fluxes above an agriculturally used mountain grassland for 6 months. Harvesting of the grassland disturbed the otherwise stable COS-to-CO2 uptake ratio. We even found the canopy to release COS during those times.
Getachew Agmuas Adnew, Thijs L. Pons, Gerbrand Koren, Wouter Peters, and Thomas Röckmann
Biogeosciences, 17, 3903–3922, https://doi.org/10.5194/bg-17-3903-2020, https://doi.org/10.5194/bg-17-3903-2020, 2020
Short summary
Short summary
We measured the effect of photosynthesis, the largest flux in the carbon cycle, on the triple oxygen isotope composition of atmospheric CO2 at the leaf level during gas exchange using three plant species. The main factors that limit the impact of land vegetation on the triple oxygen isotope composition of atmospheric CO2 are identified, characterized and discussed. The effect of photosynthesis on the isotopic composition of CO2 is commonly quantified as discrimination (ΔA).
Cited articles
Anderson, G.: Assessing organic phosphorus in soils, in: The role of phosphorus in agriculture, Madison, USA, Amer. Soc. Agron., 411–432, 1980.
Angert, A., Weiner, T., Mazeh, S., Tamburini, F., Frossard, E., Bernasconi, S. M., and Sternberg, M.: Seasonal variability of soil phosphate stable oxygen isotopes in rainfall manipulation experiments, Geochim. Cosmochim. Acta, 75, 4216–4227, 2011.
Angert, A., Weiner, T., Mazeh, S., and Sternberg, M: Soil phosphate stable oxygen isotopes across rainfall and bedrock gradients, Environ. Sci. Technol., 46, 2156–2162, 2012.
Annaheim, K. E., Rufener, C. B., Frossard, E., and Bünemann, E. K.: Hydrolysis of organic phosphorus in soil water suspensions after addition of phosphatase enzymes, Biol. Fertil. Soil., 49, 1203–1213, 2013.
Blake, R. E., O'Neil, J. R., and Surkov, A. V.: Biogeochemical cycling of phosphorus: Insights from oxygen isotope effects of phosphoenzymes, Am. J. Sci., 305, 596–620, 2005.
Chang, S. J. and Blake, R. E.: Precise calibration of equilibrium oxygen isotope fractionations between dissolved phosphate and water from 3 to 37 °C, Geochim. Cosmochim. Acta, 150, 314–329, 2015.
Cohn, M.: Mechanisms of cleavage of glucose-1-phosphate, J. Biol. Chem., 180, 771–781, 1949.
Cohn, M.: Phosphate-water exchange reaction catalyzed by inorganic pyrophosphatase of yeast, J. Biol. Chem., 230, 369–380, 1958.
Cosgrove, D. J. and Irving, G. C. J.: Inositol phosphates: their chemistry, biochemistry, and physiology, Elsevier Scientific Pub. Co., Distributors for the US and Canada, Elsevier/North-Holland, Amsterdam, New York,New York, 1980.
Dalal, R. C.: Soil organic phosphorus, Adv. Agron., 29, 83–117, 1977.
Doolette, A. L., Smernik, R. J., and Dougherty, W. J.: Rapid decomposition of phytate applied to a calcareous soil demonstrated by a solution 31P NMR study, Eur. J. Soil Sci., 61, 563–575, 2010.
Dvořáková, J.: Phytase: Sources, preparation and exploitation, Folia Microbiol., 43, 323–338, 1998.
Ehlers, K., Bakken, L. R., Frostegård, A., Frossard, E., and Bünemann, E. K.: Phosphorus limitation in a Ferralsol: Impact on microbial activity and cell internal P pools, Soil Biol. Biochem., 42, 558–566, 2010.
George, T. S., Richardson, A. E., and Simpson, R. J.: Behaviour of plant-derived extracellular phytase upon addition to soil, Soil Biol. Biochem., 37, 977–988, 2005.
Gibson, D. M. and Ullah A., H. J.: Purification and characterization of phytase from cotyledons of germinating soybean seeds, Arch. Biochem. Biophys., 260, 503–513, 1988.
Gross, A. and Angert, A.: What processes control the oxygen isotopes of soil bio-available phosphate?, Geochim. Cosmochim. Acta, 159, 100–111, 2015.
Gross, A., Nishri, A., and Angert, A.: Use of phosphate oxygen isotopes for identifying atmospheric-P sources: A case study at Lake Kinneret, Environ. Sci. Technol., 47, 2721–2727, 2013.
Hayes, J. E., Richardson, A. E., and Simpson, R. J.: Phytase and acid phosphatase activities in extracts from roots of temperate pasture grass and legume seedlings, Functional Plant Biol., 26, 801–809, 1999.
Kim, E. E. and Wyckoff, H. W.: Reaction mechanism of alkaline phosphatase based on crystal structures: Two-metal ion catalysis, J. Mol. Biol., 218, 449–464, 1991.
Knöfel, T. and Sträter, N.: Mechanism of hydrolysis of phosphate esters by the dimetal center of 5´-nucleotidase based on crystal structures, J. Mol. Biol., 309, 239–254, 2001.
Kolodny, Y., Luz, B., and Navon, O.: Oxygen isotope variations in phosphate of biogenic apatites, I. Fish bone apatite–rechecking the rules of the game, Earth Planet. Sci. Lett., 64, 398–404, 1983a.
Kostrewa, D., Grüninger-Leitch, F., D'Arcy, A., Broger, C., Mitchell, D., and van Loon, A. P. G. M.: Crystal structure of phytase from Aspergillus ficuum at 2.5 Å resolution, Nat. Struct. Biol., 4, 185–190, 1997.
Kostrewa, D., Wyss, M., D'Arcy, A., and van Loon, A. P. G.: Crystal structure of Aspergillus niger pH 2.5 acid phosphatase at 2.4 Å resolution, J. Mol. Biol., 288, 965–974, 1999.
Li, J., Hegeman, C. E., Hanlon, R. W., Lacy, G. H., Denbow, D. M., and Grabau, E. A.: Secretion of active recombinant phytase from soybean cell-suspension cultures, Plant Physiol., 114, 1103–1111, 1997.
Li, M., Osaki, M., Rao, I. M., and Tadano, T.: Secretion of phytase from the roots of several plant species under phosphorus-deficient conditions, Plant Soil, 195, 161–169, 1997.
Liang, Y. and Blake, R.E.: Oxygen isotope signature of Pi regeneration from organic compounds by phosphomonoesterases and photooxidation, Geochim. Cosmochim. Acta, 70, 3957–3969, 2006.
Liang, Y. and Blake, R. E.: Compound- and enzyme-specific phosphodiester hydrolysis mechanisms revealed by δ18O of dissolved inorganic phosphate: Implications for marine P cycling, Geochim. Cosmochim. Acta, 73, 3782–3794, 2009.
Lim, D., Golovan, S., Forsberg, C. W., and Jia, Z.: Crystal structures of Escherichia coli phytase and its complex with phytate, Nat. Struct. Mol. Biol., 7, 108–113, 2000..
Lindqvist, Y., Schneider, G., and Vihko, P.: Crystal structures of rat acid phosphatase complexed with the transition-state analogs vanadate and molybdate, Eur. J. Biochem., 221, 139–142, 1994.
Longinelli, A. and Nuti, S.: Revised phosphate-water isotopic temperature scale, Earth Planet. Sci. Lett., 19, 373–376, 1973.
Lott, J. N. A., Ockenden, I., Raboy, V., and Batten, G. D.: Phytic acid and phosphorus in crop seeds and fruits: a global estimate, Seed Sci. Res., 10, 11–33, 2000.
Lung, S.-C. and Lim, B. L.: Assimilation of phytate-phosphorus by the extracellular phytase activity of tobacco (Nicotiana tabacum) is affected by the availability of soluble phytate, Plant Soil, 279, 187–199, 2006.
McKercher, R. B. and Anderson, G.: Organic phosphate sorption by neutral and basic soils, Commun. Soil Sci. Plant Anal., 20, 723–732, 1989.
McLaughlin, K., Paytan, A., Kendall, C., and Silva, S.: Oxygen isotopes of phosphatic compounds – Application for marine particulate matter, sediments and soils, Mar. Chem., 98, 148–155, 2006c.
Mullaney, E. J. and Ullah, A. H. J.: The term phytase comprises several different classes of enzymes, Biochem. Biophys. Res. Commun., 312, 179–184, 2003.
Ognalaga, M., Frossard, E., and Thomas, F.: Glucose-1-phosphate and Myo-inositol Hexaphosphate Adsorption Mechanisms on Goethite, Soil Sci. Soc. Am. J., 58, 332–337, 1994.
Oh, B.-C., Choi, W.-C., Park, S., Kim, Y., and Oh, T.-K.: Biochemical properties and substrate specificities of alkaline and histidine acid phytases, Appl. Microbiol. Biotechnol., 63, 362–372, 2004.
Ohno, T. and Zibilske, L. M.: Determination of Low Concentrations of Phosphorus in Soil Extracts Using Malachite Green, Soil Sci. Soc. Am. J., 55, 892 pp., 1991.
O'Neil, J. R., Vennemann, T. W., and McKenzie, W. F.: Effects of speciation on equilibrium fractionations and rates of oxygen isotope exchange between (PO4)aq and H2O, Geochim. Cosmochim. Acta, 67, 3135–3144, 2003.
Ortlund, E., LaCount, M. W., and Lebioda, L.: Crystal structures of human prostatic acid phosphatase in complex with a phosphate ion and α-Benzylaminobenzylphosphonic acid update the mechanistic picture and offer new insights into inhibitor design, Biochemical, 42, 383–389, 2003.
Paytan, A., Kolodny, Y., Neori, A., and Luz, B.: Rapid biologically mediated oxygen isotope exchange between water and phosphate, Global Biogeochem. Cy., 16, 13-1–13-8, 2002.
Pfahler, V., Dürr-Auster, T., Tamburini, F., M. Bernasconi, S., and Frossard, E.: 18O enrichment in phosphorus pools extracted from soybean leaves, New Phytol., 197, 186–193, 2013.
Raboy, V.: Accumulation and Storage of Phosphate and Minerals, in: Cellular and Molecular Biology of Plant Seed Development, edited by: Larkins, B. A. and Vasil, I. K., Advances in Cellular and Molecular Biology of Plants, Springer Netherlands, 441–477, 1997.
Richardson, A. E., Hadobas, P. A., and Hayes, J. E.: Acid phosphomonoesterase and phytase activities of wheat (Triticum aestivum L.) roots and utilization of organic phosphorus substrates by seedlings grown in sterile culture, Plant Cell Environ., 23, 397–405, 2000.
Richardson, A. E., Hadobas, P. A., and Hayes, J. E.: Extracellular secretion of Aspergillus phytase from Arabidopsis roots enables plants to obtain phosphorus from phytate, Plant J., 25, 641–649, 2001.
Richardson, A. E., Lynch, J. P., Ryan, P. R., Delhaize, E., Smith, F. A., Smith, S. E., Harvey, P. R., Ryan, M. H., Veneklaas, E. J., Lambers, H., Oberson, A., Culvenor, R. A., and Simpson, R. J.: Plant and microbial strategies to improve the phosphorus efficiency of agriculture, Plant Soil, 349, 121–156, 2011.
Roberts, K., Defforey, D., Turner, B. L., Condron, L. M., Peek, S., Silva, S., Kendall, C., and Paytan, A.: Oxygen isotopes of phosphate and soil phosphorus cycling across a 6500 year chronosequence under lowland temperate rainforest, Geoderma, https://doi.org/10.1016/j.geoderma.2015.04.010, 2015.
Shears, S. B. and Turner, B. L.: Nomenclature and terminology of inositol phosphates: clarification and a glossary of terms, in: Inositol Phosphates: Linking Agriculture and the Environment, CAB International, Wallingford, UK, 1–6, 2007.
Stec, B., Holtz, K. M., and Kantrowitz, E. R.: A revised mechanism for the alkaline phosphatase reaction involving three metal ions, J. Mol. Biol., 299, 1303–1311, 2000.
Stout, L. M., Joshi, S. R., Kana, T. M., and Jaisi, D. P.: Microbial activities and phosphorus cycling: An application of oxygen isotope ratios in phosphate, Geochim. Cosmochim. Acta, 138, 101–116, 2014.
Tamburini, F., Bernasconi, S. M., Angert, A., Weiner, T., and Frossard, E.: A method for the analysis of the δ18O of inorganic phosphate extracted from soils with HCl, Eur. J. Soil Sci., 61, 1025–1032, 2010.
Tamburini, F., Pfahler, V., Bünemann, E. K., Guelland, K., Bernasconi, S. M., and Frossard, E.: Oxygen isotopes unravel the role of microorganisms in phosphate cycling in soils, Environ. Sci. Technol., 46, 5956–5962, 2012.
Turner, B. L.: Inositol phosphates in soil: amounts, forms and significance of the phosphorlyated inositol stereoisomers, in: Inositol Phosphates: Linking Agriculture and the Environment, CAB International, Wallingford, UK, 186–207, 2007.
Turner, B. L. and Haygarth, P. M.: Phosphorus forms and concentrations in leachate under four grassland soil types, Soil Sci. Soc. Am. J., 64, 1090–1099, 2000.
Turner, B. L., Papházy, M. J., Haygarth, P. M., and Mckelvie, I. D.: Inositol phosphates in the environment, Phil. Trans. R. Soc. Lond., 357, 449–469, 2002.
van Etten, R. L. V., Davidson, R., Stevis, P. E., MacArthur, H., and Moore, D. L.: Covalent structure, disulfide bonding, and identification of reactive surface and active site residues of human prostatic acid phosphatase, J. Biol. Chem., 266, 2313–2319, 1991.
von Sperber, C., Kries, H., Tamburini, F., Bernasconi, S. M., and Frossard, E.: The effect of phosphomonoesterases on the oxygen isotope composition of phosphate, Geochim. Cosmochim. Acta, 125, 519–527, 2014.
Wodzinski, R. J. and Ullah, A. H. J.: Phytase, in: Advances in Applied Microbiology, edited by: Neidleman, S. L. and Laskin, A. I., Academic Press, 263–302, 1996.
Young, M. B., McLaughlin, K., Kendall, C., Stringfellow, W., Rollog, M., Elsbury, K., Donald, E., and Paytan, A.: Characterizing the oxygen isotopic composition of phosphate sources to aquatic ecosystems, Environ. Sci. Technol., 43, 5190–5196, 2009.
Zimmermann, P., Zardi, G., Lehmann, M., Zeder, C., Amrhein, N., Frossard, E., and Bucher, M.: Engineering the root–soil interface via targeted expression of a synthetic phytase gene in trichoblasts, Plant Biotech. J., 1, 353–360, 2003.
Zohar, I., Shaviv, A., Klass, T., Roberts, K., and Paytan, A.: Method for the analysis of oxygen isotopic composition of soil phosphate fractions, Environ. Sci. Technol., 44, 7583–7588, 2010a.
Zohar, I., Shaviv, A., Young, M., Kendall, C., Silva, S., and Paytan, A.: Phosphorus dynamics in soils irrigated with reclaimed waste water or fresh water – A study using oxygen isotopic composition of phosphate, Geoderma, 159, 109–121, 2010b.
Altmetrics
Final-revised paper
Preprint