Articles | Volume 14, issue 20
https://doi.org/10.5194/bg-14-4815-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-14-4815-2017
© Author(s) 2017. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
27 Oct 2017
Research article |
| 27 Oct 2017
Contrasting effects of ammonium and nitrate additions on the biomass of soil microbial communities and enzyme activities in subtropical China
Chuang Zhang
College of Land and Environment, Shenyang Agricultural University,
Shenyang 110866, China
Key Laboratory of Ecosystem Network Observation and Modeling,
Institute of Geographic Sciences and Natural Resources Research, Chinese
Academy of Sciences, Beijing 100101, China
Key Laboratory of Agricultural Water Resources, Center for
Agricultural Resources Research, Institute of Genetics and Developmental
Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang
050021, China
Xin-Yu Zhang
CORRESPONDING AUTHOR
Key Laboratory of Ecosystem Network Observation and Modeling,
Institute of Geographic Sciences and Natural Resources Research, Chinese
Academy of Sciences, Beijing 100101, China
College of Resources and Environment, University of Chinese Academy of
Sciences, Beijing 100190, China
Hong-Tao Zou
CORRESPONDING AUTHOR
College of Land and Environment, Shenyang Agricultural University,
Shenyang 110866, China
Liang Kou
Key Laboratory of Ecosystem Network Observation and Modeling,
Institute of Geographic Sciences and Natural Resources Research, Chinese
Academy of Sciences, Beijing 100101, China
College of Resources and Environment, University of Chinese Academy of
Sciences, Beijing 100190, China
Yang Yang
Key Laboratory of Ecosystem Network Observation and Modeling,
Institute of Geographic Sciences and Natural Resources Research, Chinese
Academy of Sciences, Beijing 100101, China
College of Resources and Environment, University of Chinese Academy of
Sciences, Beijing 100190, China
Xue-Fa Wen
Key Laboratory of Ecosystem Network Observation and Modeling,
Institute of Geographic Sciences and Natural Resources Research, Chinese
Academy of Sciences, Beijing 100101, China
College of Resources and Environment, University of Chinese Academy of
Sciences, Beijing 100190, China
Sheng-Gong Li
Key Laboratory of Ecosystem Network Observation and Modeling,
Institute of Geographic Sciences and Natural Resources Research, Chinese
Academy of Sciences, Beijing 100101, China
College of Resources and Environment, University of Chinese Academy of
Sciences, Beijing 100190, China
Hui-Min Wang
Key Laboratory of Ecosystem Network Observation and Modeling,
Institute of Geographic Sciences and Natural Resources Research, Chinese
Academy of Sciences, Beijing 100101, China
College of Resources and Environment, University of Chinese Academy of
Sciences, Beijing 100190, China
Xiao-Min Sun
Key Laboratory of Ecosystem Network Observation and Modeling,
Institute of Geographic Sciences and Natural Resources Research, Chinese
Academy of Sciences, Beijing 100101, China
College of Resources and Environment, University of Chinese Academy of
Sciences, Beijing 100190, China
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Biogeosciences, 19, 5617–5631, https://doi.org/10.5194/bg-19-5617-2022, https://doi.org/10.5194/bg-19-5617-2022, 2022
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Biogeosciences, 19, 5375–5399, https://doi.org/10.5194/bg-19-5375-2022, https://doi.org/10.5194/bg-19-5375-2022, 2022
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Biogeosciences, 19, 5199–5219, https://doi.org/10.5194/bg-19-5199-2022, https://doi.org/10.5194/bg-19-5199-2022, 2022
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Sania Arif, Heiko Nacke, Elias Schliekmann, Andreas Reimer, Gernot Arp, and Michael Hoppert
Biogeosciences, 19, 4883–4902, https://doi.org/10.5194/bg-19-4883-2022, https://doi.org/10.5194/bg-19-4883-2022, 2022
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Chunmei Zhang, Huirong Li, Yinxin Zeng, Haitao Ding, Bin Wang, Yangjie Li, Zhongqiang Ji, Yonghong Bi, and Wei Luo
Biogeosciences, 19, 4639–4654, https://doi.org/10.5194/bg-19-4639-2022, https://doi.org/10.5194/bg-19-4639-2022, 2022
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The unique microbial eukaryotic community structure and lower diversity have been demonstrated in five freshwater lakes of the Fildes Peninsula, Antarctica. Stochastic processes and biotic co-occurrence patterns were shown to be important in shaping microbial eukaryotic communities in the area. Our study provides a better understanding of the dynamic patterns and ecological assembly processes of microbial eukaryotic communities in Antarctic oligotrophic lakes (Fildes Peninsula).
Juan Pablo Almeida, Nicholas P. Rosenstock, Susanne K. Woche, Georg Guggenberger, and Håkan Wallander
Biogeosciences, 19, 3713–3726, https://doi.org/10.5194/bg-19-3713-2022, https://doi.org/10.5194/bg-19-3713-2022, 2022
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Fungi living in symbiosis with tree roots can accumulate belowground, forming special tissues than can repel water. We measured the water repellency of organic material incubated belowground and correlated it with fungal growth. We found a positive association between water repellency and root symbiotic fungi. These results are important because an increase in soil water repellency can reduce the release of CO2 from soils into the atmosphere and mitigate the effects of greenhouse gasses.
Karen M. Brandenburg, Björn Rost, Dedmer B. Van de Waal, Mirja Hoins, and Appy Sluijs
Biogeosciences, 19, 3305–3315, https://doi.org/10.5194/bg-19-3305-2022, https://doi.org/10.5194/bg-19-3305-2022, 2022
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Reconstructions of past CO2 concentrations rely on proxy estimates, with one line of proxies relying on the CO2-dependence of stable carbon isotope fractionation in marine phytoplankton. Culturing experiments provide insights into which processes may impact this. We found, however, that the methods with which these culturing experiments are performed also influence 13C fractionation. Caution should therefore be taken when extrapolating results from these experiments to proxy applications.
Weilin Huang, Peter M. van Bodegom, Toni Viskari, Jari Liski, and Nadejda A. Soudzilovskaia
Biogeosciences, 19, 1469–1490, https://doi.org/10.5194/bg-19-1469-2022, https://doi.org/10.5194/bg-19-1469-2022, 2022
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This work focuses on one of the essential pathways of mycorrhizal impact on C cycles: the mediation of plant litter decomposition. We present a model based on litter chemical quality which precludes a conclusive examination of mycorrhizal impacts on soil C. It improves long-term decomposition predictions and advances our understanding of litter decomposition dynamics. It creates a benchmark in quantitatively examining the impacts of plant–microbe interactions on soil C dynamics.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
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Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
Ralf Conrad, Pengfei Liu, and Peter Claus
Biogeosciences, 18, 6533–6546, https://doi.org/10.5194/bg-18-6533-2021, https://doi.org/10.5194/bg-18-6533-2021, 2021
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Acetate is an important intermediate during the anaerobic degradation of organic matter. It is consumed by methanogenic and sulfidogenic microorganisms accompanied by stable carbon isotope fractionation. We determined isotope fractionation under different conditions in two paddy soils and two lake sediments and also determined the composition of the microbial communities. Despite a relatively wide range of experimental conditions, the range of fractionation factors was quite moderate.
Natalie R. Cohen, Abigail E. Noble, Dawn M. Moran, Matthew R. McIlvin, Tyler J. Goepfert, Nicholas J. Hawco, Christopher R. German, Tristan J. Horner, Carl H. Lamborg, John P. McCrow, Andrew E. Allen, and Mak A. Saito
Biogeosciences, 18, 5397–5422, https://doi.org/10.5194/bg-18-5397-2021, https://doi.org/10.5194/bg-18-5397-2021, 2021
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A previous study documented an intense hydrothermal plume in the South Pacific Ocean; however, the iron release associated with this plume and the impact on microbiology were unclear. We describe metal concentrations associated with multiple hydrothermal plumes in this region and protein signatures of plume-influenced microbes. Our findings demonstrate that resources released from these systems can be transported away from their source and may alter the physiology of surrounding microbes.
Sabyasachi Bhattacharya, Tarunendu Mapder, Svetlana Fernandes, Chayan Roy, Jagannath Sarkar, Moidu Jameela Rameez, Subhrangshu Mandal, Abhijit Sar, Amit Kumar Chakraborty, Nibendu Mondal, Sumit Chatterjee, Bomba Dam, Aditya Peketi, Ranadhir Chakraborty, Aninda Mazumdar, and Wriddhiman Ghosh
Biogeosciences, 18, 5203–5222, https://doi.org/10.5194/bg-18-5203-2021, https://doi.org/10.5194/bg-18-5203-2021, 2021
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Physicochemical determinants of microbiome architecture across continental shelves–slopes are unknown, so we explored the geomicrobiology along 3 m sediment horizons of seasonal (shallow coastal) and perennial (deep sea) hypoxic zones of the Arabian Sea. Nature, concentration, and fate of the organic matter delivered to the sea floor were found to shape the microbiome across the western Indian margin, under direct–indirect influence of sedimentation rate and water column O2 level.
Aditi Sengupta, Sarah J. Fansler, Rosalie K. Chu, Robert E. Danczak, Vanessa A. Garayburu-Caruso, Lupita Renteria, Hyun-Seob Song, Jason Toyoda, Jacqueline Hager, and James C. Stegen
Biogeosciences, 18, 4773–4789, https://doi.org/10.5194/bg-18-4773-2021, https://doi.org/10.5194/bg-18-4773-2021, 2021
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Conceptual models link microbes with the environment but are untested. We test a recent model using riverbed sediments. We exposed sediments to disturbances, going dry and becoming wet again. As the length of dry conditions got longer, there was a sudden shift in the ecology of microbes, chemistry of organic matter, and rates of microbial metabolism. We propose a new model based on feedbacks initiated by disturbance that cascade across biological, chemical, and functional aspects of the system.
Cora Hörstmann, Eric J. Raes, Pier Luigi Buttigieg, Claire Lo Monaco, Uwe John, and Anya M. Waite
Biogeosciences, 18, 3733–3749, https://doi.org/10.5194/bg-18-3733-2021, https://doi.org/10.5194/bg-18-3733-2021, 2021
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Microbes are the main drivers of productivity and nutrient cycling in the ocean. We present a combined approach assessing C and N uptake and microbial community diversity across ecological provinces in the Southern Ocean and southern Indian Ocean. Provinces showed distinct genetic fingerprints, but microbial activity varied gradually across regions, correlating with nutrient concentrations. Our study advances the biogeographic understanding of microbial diversity across C and N uptake regimes.
Nimrod Wieler, Tali Erickson Gini, Osnat Gillor, and Roey Angel
Biogeosciences, 18, 3331–3342, https://doi.org/10.5194/bg-18-3331-2021, https://doi.org/10.5194/bg-18-3331-2021, 2021
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Biological rock crusts (BRCs) are common microbial-based assemblages covering rocks in drylands. BRCs play a crucial role in arid environments because of the limited activity of plants and soil. Nevertheless, BRC development rates have never been dated. Here we integrated archaeological, microbiological and geological methods to provide a first estimation of the growth rate of BRCs under natural conditions. This can serve as an affordable dating tool in archaeological sites in arid regions.
Michal Elul, Maxim Rubin-Blum, Zeev Ronen, Itay Bar-Or, Werner Eckert, and Orit Sivan
Biogeosciences, 18, 2091–2106, https://doi.org/10.5194/bg-18-2091-2021, https://doi.org/10.5194/bg-18-2091-2021, 2021
Mindaugas Zilius, Irma Vybernaite-Lubiene, Diana Vaiciute, Donata Overlingė, Evelina Grinienė, Anastasija Zaiko, Stefano Bonaglia, Iris Liskow, Maren Voss, Agneta Andersson, Sonia Brugel, Tobia Politi, and Paul A. Bukaveckas
Biogeosciences, 18, 1857–1871, https://doi.org/10.5194/bg-18-1857-2021, https://doi.org/10.5194/bg-18-1857-2021, 2021
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In fresh and brackish waters, algal blooms are often dominated by cyanobacteria, which have the ability to utilize atmospheric nitrogen. Cyanobacteria are also unusual in that they float to the surface and are dispersed by wind-driven currents. Their patchy and dynamic distribution makes it difficult to track their abundance and quantify their effects on nutrient cycling. We used remote sensing to map the distribution of cyanobacteria in a large Baltic lagoon and quantify their contributions.
Saly Jaber, Muriel Joly, Maxence Brissy, Martin Leremboure, Amina Khaled, Barbara Ervens, and Anne-Marie Delort
Biogeosciences, 18, 1067–1080, https://doi.org/10.5194/bg-18-1067-2021, https://doi.org/10.5194/bg-18-1067-2021, 2021
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Our study is of interest to atmospheric scientists and environmental microbiologists, as we show that clouds can be considered a medium where bacteria efficiently degrade and transform amino acids, in competition with chemical processes. As current atmospheric multiphase models are restricted to chemical degradation of organic compounds, our conclusions motivate further model development.
Kahina Djaoudi, France Van Wambeke, Aude Barani, Nagib Bhairy, Servanne Chevaillier, Karine Desboeufs, Sandra Nunige, Mohamed Labiadh, Thierry Henry des Tureaux, Dominique Lefèvre, Amel Nouara, Christos Panagiotopoulos, Marc Tedetti, and Elvira Pulido-Villena
Biogeosciences, 17, 6271–6285, https://doi.org/10.5194/bg-17-6271-2020, https://doi.org/10.5194/bg-17-6271-2020, 2020
Romie Tignat-Perrier, Aurélien Dommergue, Alban Thollot, Olivier Magand, Timothy M. Vogel, and Catherine Larose
Biogeosciences, 17, 6081–6095, https://doi.org/10.5194/bg-17-6081-2020, https://doi.org/10.5194/bg-17-6081-2020, 2020
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The adverse atmospheric environmental conditions do not appear suited for microbial life. We conducted the first global comparative metagenomic analysis to find out if airborne microbial communities might be selected by their ability to resist these adverse conditions. The relatively higher concentration of fungi led to the observation of higher proportions of stress-related functions in air. Fungi might likely resist and survive atmospheric physical stress better than bacteria.
Yanhong Lu, Shunyan Cheung, Ling Chen, Shuh-Ji Kao, Xiaomin Xia, Jianping Gan, Minhan Dai, and Hongbin Liu
Biogeosciences, 17, 6017–6032, https://doi.org/10.5194/bg-17-6017-2020, https://doi.org/10.5194/bg-17-6017-2020, 2020
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Through a comprehensive investigation, we observed differential niche partitioning among diverse ammonia-oxidizing archaea (AOA) sublineages in a typical subtropical estuary. Distinct AOA communities observed at DNA and RNA levels suggested that a strong divergence in ammonia-oxidizing activity among different AOA groups occurs. Our result highlights the importance of identifying major ammonia oxidizers at RNA level in future studies.
Anna-Neva Visser, Scott D. Wankel, Pascal A. Niklaus, James M. Byrne, Andreas A. Kappler, and Moritz F. Lehmann
Biogeosciences, 17, 4355–4374, https://doi.org/10.5194/bg-17-4355-2020, https://doi.org/10.5194/bg-17-4355-2020, 2020
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This study focuses on the chemical reaction between Fe(II) and nitrite, which has been reported to produce high levels of the greenhouse gas N2O. We investigated the extent to which dead biomass and Fe(II) minerals might enhance this reaction. Here, nitrite reduction was highest when both additives were present but less pronounced if only Fe(II) minerals were added. Both reaction systems show distinct differences, rather low N2O levels, and indicated the abiotic production of N2.
Lisa Tanet, Séverine Martini, Laurie Casalot, and Christian Tamburini
Biogeosciences, 17, 3757–3778, https://doi.org/10.5194/bg-17-3757-2020, https://doi.org/10.5194/bg-17-3757-2020, 2020
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Bioluminescent bacteria, the most abundant light-emitting organisms in the ocean, can be free-living, be symbiotic or colonize organic particles. This review suggests that they act as a visual target and may indirectly influence the sequestration of biogenic carbon in oceans by increasing the attraction rate for consumers. We summarize the instrumentation available to quantify this impact in future studies and propose synthetic figures integrating these ecological and biogeochemical concepts.
Michael Lintner, Bianca Biedrawa, Julia Wukovits, Wolfgang Wanek, and Petra Heinz
Biogeosciences, 17, 3723–3732, https://doi.org/10.5194/bg-17-3723-2020, https://doi.org/10.5194/bg-17-3723-2020, 2020
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Foraminifera are unicellular marine organisms that play an important role in the marine element cycle. Changes of environmental parameters such as salinity or temperature have a significant impact on the faunal assemblages. Our experiments show that changing salinity in the German Wadden Sea immediately influences the foraminiferal community. It seems that A. tepida is better adapted to salinity fluctuations than H. germanica.
Kathrin Busch, Ulrike Hanz, Furu Mienis, Benjamin Mueller, Andre Franke, Emyr Martyn Roberts, Hans Tore Rapp, and Ute Hentschel
Biogeosciences, 17, 3471–3486, https://doi.org/10.5194/bg-17-3471-2020, https://doi.org/10.5194/bg-17-3471-2020, 2020
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Seamounts are globally abundant submarine structures that offer great potential to study the impacts and interactions of environmental gradients at a single geographic location. In an exemplary way, we describe potential mechanisms by which a seamount can affect the structure of pelagic and benthic (sponge-)associated microbial communities. We conclude that the geology, physical oceanography, biogeochemistry, and microbiology of seamounts are even more closely linked than currently appreciated.
Alexander Bratek, Justus E. E. van
Beusekom, Andreas Neumann, Tina Sanders, Jana Friedrich, Kay-Christian Emeis, and Kirstin Dähnke
Biogeosciences, 17, 2839–2851, https://doi.org/10.5194/bg-17-2839-2020, https://doi.org/10.5194/bg-17-2839-2020, 2020
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The following paper highlights the importance of benthic N-transformation rates in different sediment types in the southern North Sea as a source of fixed nitrogen for primary producers and also as a sink of fixed nitrogen. Sedimentary fluxes of dissolved inorganic nitrogen support ∼7 to 59 % of the average annual primary production. Semi-permeable and permeable sediments contribute ∼68 % of the total benthic N2 production rates, counteracting eutrophication in the southern North Sea.
Sabine Haalboom, David M. Price, Furu Mienis, Judith D. L. van Bleijswijk, Henko C. de Stigter, Harry J. Witte, Gert-Jan Reichart, and Gerard C. A. Duineveld
Biogeosciences, 17, 2499–2519, https://doi.org/10.5194/bg-17-2499-2020, https://doi.org/10.5194/bg-17-2499-2020, 2020
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Mineral mining in deep-sea hydrothermal settings will lead to the formation of plumes of fine-grained, chemically reactive, suspended matter. Understanding how natural hydrothermal plumes evolve as they disperse from their source, and how they affect their surrounding environment, may help in characterising the behaviour of the diluted part of mining plumes. The natural plume provided a heterogeneous, geochemically enriched habitat conducive to the development of a distinct microbial ecology.
Noelle A. Held, Eric A. Webb, Matthew M. McIlvin, David A. Hutchins, Natalie R. Cohen, Dawn M. Moran, Korinna Kunde, Maeve C. Lohan, Claire Mahaffey, E. Malcolm S. Woodward, and Mak A. Saito
Biogeosciences, 17, 2537–2551, https://doi.org/10.5194/bg-17-2537-2020, https://doi.org/10.5194/bg-17-2537-2020, 2020
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Trichodesmium is a globally important marine nitrogen fixer that stimulates primary production in the surface ocean. We surveyed metaproteomes of Trichodesmium populations across the North Atlantic and other oceans, and we found that they experience simultaneous phosphate and iron stress because of the biophysical limits of nutrient uptake. Importantly, nitrogenase was most abundant during co-stress, indicating the potential importance of this phenotype to global nitrogen and carbon cycling.
Helmke Hepach, Claire Hughes, Karen Hogg, Susannah Collings, and Rosie Chance
Biogeosciences, 17, 2453–2471, https://doi.org/10.5194/bg-17-2453-2020, https://doi.org/10.5194/bg-17-2453-2020, 2020
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Tropospheric iodine takes part in numerous atmospheric chemical cycles, including tropospheric ozone destruction and aerosol formation. Due to its significance for atmospheric processes, it is crucial to constrain its sources and sinks. This paper aims at investigating and understanding features of biogenic iodate-to-iodide reduction in microalgal monocultures. We find that phytoplankton senescence may play a crucial role in the release of iodide to the marine environment.
Roger D. Finlay, Shahid Mahmood, Nicholas Rosenstock, Emile B. Bolou-Bi, Stephan J. Köhler, Zaenab Fahad, Anna Rosling, Håkan Wallander, Salim Belyazid, Kevin Bishop, and Bin Lian
Biogeosciences, 17, 1507–1533, https://doi.org/10.5194/bg-17-1507-2020, https://doi.org/10.5194/bg-17-1507-2020, 2020
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Effects of biological activity on mineral weathering operate at scales ranging from short-term, microscopic interactions to global, evolutionary timescale processes. Microorganisms have had well-documented effects at large spatio-temporal scales, but to establish the quantitative significance of microscopic measurements for field-scale processes, higher-resolution studies of liquid chemistry at local weathering sites and improved upscaling to soil-scale dissolution rates are still required.
Christine Rooks, James Kar-Hei Fang, Pål Tore Mørkved, Rui Zhao, Hans Tore Rapp, Joana R. Xavier, and Friederike Hoffmann
Biogeosciences, 17, 1231–1245, https://doi.org/10.5194/bg-17-1231-2020, https://doi.org/10.5194/bg-17-1231-2020, 2020
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Sponge grounds are known as nutrient sources, providing nitrate and ammonium to the ocean. We found that they also can do the opposite: in six species from Arctic and North Atlantic sponge grounds, we measured high rates of denitrification, which remove these nutrients from the sea. Rates were highest when the sponge tissue got low in oxygen, which happens when sponges stop pumping because of stress. Sponge grounds may become nutrient sinks when exposed to stress.
Cheng Li, Clare E. Reimers, and Yvan Alleau
Biogeosciences, 17, 597–607, https://doi.org/10.5194/bg-17-597-2020, https://doi.org/10.5194/bg-17-597-2020, 2020
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Novel filamentous cable bacteria that grow in the top layer of intertidal mudflat sediment were attracted to electrodes poised at a positive electrical potential. Several diverse morphologies of Desulfobulbaceae filaments, cells, and colonies were observed on the electrode surface. These observations provide information to suggest conditions that will induce cable bacteria to perform electron donation to an electrode, informing future experiments that culture cable bacteria outside of sediment.
Marie Maßmig, Jan Lüdke, Gerd Krahmann, and Anja Engel
Biogeosciences, 17, 215–230, https://doi.org/10.5194/bg-17-215-2020, https://doi.org/10.5194/bg-17-215-2020, 2020
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Little is known about the rates of bacterial element cycling in oxygen minimum zones (OMZs). We measured bacterial production and rates of extracellular hydrolytic enzymes at various in situ oxygen concentrations in the OMZ off Peru. Our field data show unhampered bacterial activity at low oxygen concentrations. Meanwhile bacterial degradation of organic matter substantially contributed to the formation of the OMZ.
Anna T. Kunert, Mira L. Pöhlker, Kai Tang, Carola S. Krevert, Carsten Wieder, Kai R. Speth, Linda E. Hanson, Cindy E. Morris, David G. Schmale III, Ulrich Pöschl, and Janine Fröhlich-Nowoisky
Biogeosciences, 16, 4647–4659, https://doi.org/10.5194/bg-16-4647-2019, https://doi.org/10.5194/bg-16-4647-2019, 2019
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A screening of more than 100 strains from 65 different species revealed that the ice nucleation activity within the fungal genus Fusarium is more widespread than previously assumed. Filtration experiments suggest that the single cell-free Fusarium IN is smaller than 100 kDa (~ 6 nm) and that aggregates can be formed in solution. Exposure experiments, freeze–thaw cycles, and long-term storage tests demonstrate a high stability of Fusarium IN under atmospherically relevant conditions.
Qing Wang, Renbin Zhu, Yanling Zheng, Tao Bao, and Lijun Hou
Biogeosciences, 16, 4113–4128, https://doi.org/10.5194/bg-16-4113-2019, https://doi.org/10.5194/bg-16-4113-2019, 2019
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We investigated abundance, potential activity, and diversity of soil ammonia-oxidizing archaea (AOA) and bacteria (AOB) in five Antarctic tundra patches, including penguin colony, seal colony, and tundra marsh. We have found (1) sea animal colonization increased AOB population size.; (2) AOB contributed to ammonia oxidation rates more than AOA in sea animal colonies; (3) community structures of AOB and AOA were closely related to soil biogeochemical processes associated with animal activities.
Yalda Vasebi, Marco E. Mechan Llontop, Regina Hanlon, David G. Schmale III, Russell Schnell, and Boris A. Vinatzer
Biogeosciences, 16, 1675–1683, https://doi.org/10.5194/bg-16-1675-2019, https://doi.org/10.5194/bg-16-1675-2019, 2019
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Ice nucleation particles (INPs) help ice form at temperatures as high as −4 °C and contribute to the formation of precipitation. Leaf litter contains a high concentration of INPs, but the organisms that produce them are unknown. Here, we cultured two bacteria and one fungus from leaf litter that produce INPs similar to those found in leaf litter. This suggests that leaf litter may be an important habitat of these organisms and supports a role of these organisms as producers of atmospheric INPs.
Cited articles
Allison S. D. and Vitousek P. M.: Response of extracellular enzymes to simple and complex nutrient inputs, Soil Biol. Biochem., 37, 937–943, https://doi.org/10.1016/j.soilbio.2004.09.014, 2005.
Bao, S. D.: Soil and agricultural chemistry analysis, 3rd Edn., Agriculture Press, Beijing, 2008 (in Chinese).
Burns, R. G., DeForest, J. L., Marxsen, J., Sinsabaugh, R. L., Stromberger, M. E., Wallenstein, M. D., Weintraub, M. N., and Zoppini, A.: Soil enzymes in a changing environment: Current knowledge and future directions, Soil Biol. Biochem., 58, 216–227, https://doi.org/10.1016/j.soilbio.2012.11.009, 2013.
Cusack, D. F., Silver, W. L., Torn, M. S., Burton, S. D., and Firestone, M. K.: Changes in microbial communities characteristics and soil organic matter with nitrogen additions in two tropical forests, Ecology, 92, 621–630, https://doi.org/10.1890/10-0459.1, 2011.
Dail, D. B., Davidson, E. A., and Chorover, J.: Rapid abiotic transformation of nitrate in an acid forest soil, Biogeochemistry, 54, 131–143, https://doi.org/10.1023/A:1010627431722, 2001.
Dong, W. Y., Zhang, X. Y., Liu, X. Y., Fu, X. L., Chen, F. S., Wang, H. M., Sun, X. M., and Wen, X. F.: Responses of soil microbial communities and enzyme activities to nitrogen and phosphorus additions in Chinese fir plantations of subtropical China, Biogeosciences, 12, 5540–5544, https://doi.org/10.5194/bg-12-5537-2015, 2015.
Freedman, Z. and Zak, D. R.: Atmospheric N Deposition Increases Bacterial Laccase-Like Multicopper Oxidases: Implications for Organic Matter Decay, Appl. Environ. Microbiol., 80, 4460–4468, https://doi.org/10.1128/AEM.01224-14, 2014.
Freedman, Z. B., Upchurch, R. A., Zak, D. R., and Cline, L. C.: Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses, Front. Microbiol., 7, 1–11, https://doi.org/10.3389/fmicb.2016.00259, 2016.
Frostegård, A., Tunlid, A., and Bååth, E.: Use and misuse of PLFA measurements in soils, Soil Biol. Biochem., 43, 1621–1625, https://doi.org/10.1016/j.soilbio.2010.11.021, 2011.
Gao, W. L., Yang, H., Kou, L., and Li, S. G.: Effects of nitrogen deposition and fertilization on N transformations in forest soils: a review, J. Soil Sediment., 15, 863–875, https://doi.org/10.1007/s11368-015-1087-5, 2015.
Guo, P., Wang, C. Y., Jia, Y., Wang, Q., Han, G. M., and Tian, X. J.: Response of soil microbial biomass and enzymatic activities to fertilizations of mixed inorganic and organic nitrogen at a subtropical forest in East China, Plant Soil, 338, 357–361, https://doi.org/10.1007/s11104-010-0550-8, 2011.
Heijden, M. G. A. V. D., Bardgett, R. D., and Straalen, N. M. V.: The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems, Ecol. Lett., 11, 296–310, https://doi.org/10.1111/j.1461-0248.2007.01139.x, 2008.
Hobbie, S. E., Eddy, W. C., Buyarski, C. R., Adair, C. A., Ogdahl, M. L., and Weisenhorn, P.: Response of decomposing litter and its microbial community to multiple forms of nitrogen enrichment, Ecol. Monogr., 82, 389–405, https://doi.org/10.1890/11-1600.1, 2012.
Huang, J., Mo, J. M., Zhang, W., and Lu, X. K.: Research on acidification in forest soil driven by atmospheric nitrogen deposition, Acta Ecologica Sinica, 34, 304–306, https://doi.org/10.1016/j.chnaes.2014.10.002, 2014.
Jia, Y. L., Yu, G. R., He, N. P., Zhan, X. Y., Fang, H. J., Sheng, W. P., Zuo, Y., Zhang, D. Y., and Wang, Q. F.: Spatial and decadal variations in inorganic nitrogen wet deposition in China induced by human activities, Sci. Rep., 4, 1–3, https://doi.org/10.1038/srep03763, 2014.
Jian, S. Y., Li, J. W., Chen, J., Wang, G. S., Mayes, M. A., Dzantor, K. E., Hui, D. F., and Luo, Y. Q.: Soil extracellular enzyme activities, soil carbon and nitrogen storage under nitrogen fertilization: A meta-analysis, Soil Biol. Biochem., 101, 32–41, https://doi.org/10.1016/j.soilbio.2016.07.003, 2016.
Kivlin, S. N. and Treseder, K. K.: Soil extracellular enzyme activities correspond with abiotic factors more than fungal community composition, Biogeochemistry, 117, 24–34, https://doi.org/10.1007/s10533-013-9852-2, 2014.
Kou, L., Chen, W. W., Zhang, X. Y., Gao, W. L., Yang, H., Li, D. D, and Li, S. G.: Differential responses of needle and branch order-based root decay to nitrogen additions: dominant effects of acid-unhydrolyzable residue and microbial enzymes, Plant Soil, 394, 318–319, https://doi.org/10.1007/s11104-015-2517-2, 2015.
Kou, L., Guo, D. L., Yang, H., Gao, W. L., and Li, S. G.: Growth, morphological traits and mycorrhizal colonization of fine roots respond differently to nitrogen addition in a slash pine plantation in subtropical China, Plant Soil, 391, 207–218, https://doi.org/10.1007/s11104-015-2420-x, 2015.
Li, Y., Niu, S. L., and Yu, G. R.: Aggravated phosphorus limitation on biomass production under increasing nitrogen loading: a meta – analysis, Glob. Change Biol., 22, 934–943, https://doi.org/10.1111/gcb.13125, 2016.
Liu, X. J., Duan, L., Mo, J. M., Du, E. Z., Shen, J. L., Lu, X. K., Zhang, Y., Zhou, X. B., He, C. N., and Zhang, F. S.: Nitrogen deposition and its ecological impact in China: An overview, Environ. Pollut., 159, 2253–2254, https://doi.org/10.1016/j.envpol.2010.08.002, 2011.
Liu, X. J., Zhang, Y., Han, W. H., Tang, A., Shen, J. L., Cui, Z. L., Vitousek, P., Erisman, J. W., Goulding, K., Christie, P., Fangmeier, A., and Zhang, F.: Enhanced nitrogen deposition over China, Nature, 494, 459–462, https://doi.org/10.1038/nature11917, 2013.
Marklein, A. R. and Houlton, B. Z.: Nitrogen inputs accelerate phosphorus cycling rates across a wide variety of terrestrial ecosystems, New Phytol., 193, 696–702, https://doi.org/10.1111/j.1469-8137.2011.03967.x, 2012.
Moorhead, D. L. and Sinsabaugh, R. L.: A theoretical model of litter decay and microbial interaction, Ecol. Monogr., 76, 151–172, https://doi.org/10.1890/0012-9615, 2006.
Paulinem, C., David, J., Lucyj, S., Iand, L., Hannah, T., René, V. D., Lorna A. D., and Rebekka R. E A.: Turnover of labile and recalcitrant soil carbon differ in response to nitrate and ammonium deposition in an ombrotrophic peatland, Glob. Change Biol., 16, 2307–2321, https://doi.org/10.1111/j.1365-2486.2009.02082.x, 2010.
Qian, C., and Cai, Z. C.: Leaching of nitrogen from subtropical soils as affected by nitrification potential and base cations, Plant Soil, 300, 199–204, https://doi.org/10.1007/s11104-007-9404-4, 2007.
Ramirez, K. S., Craine, J. M., and Fierer, N.: Nitrogen fertilization inhibits soil microbial respiration regardless of the form of nitrogen applied, Soil Biol. Biochem., 42, 2336–2338, https://doi.org/10.1016/j.soilbio.2010.08.032. 2010.
Saiya-Cork, K. R., Sinsabaugh, R. L., and Zak, D. R.: The effects of long term nitrogen deposition on extracellular enzyme activities in an Acer saccharum forest soil, Soil Biol. Biochem., 34, 1309–1314, https://doi.org/10.1016/S0038-0717(02)00074-3, 2002.
Sinsabaugh, R. L.: Phenol oxidase, peroxidase and organic matter dynamics of soil, Soil Biol. Biochem., 24, 391–401, https://doi.org/10.1016/j.soilbio.2009.10.014, 2010.
Sinsabaugh, R. L., Belnap, J., Findlay, S. G., Follstad Shah, J. J., Hill, B. H., Kuehn, K. A., Kushe, C. R., Litvak, M. E., Martinez, N. G., Moorhead, D. L., and Warnock, D. D.: Extracellular enzyme kinetics scale with resource availability, Biogeochemistry, 121, 287–301, https://doi.org/10.1007/s10533-014-0030-y, 2014.
Sinsabaugh, R. L., Carreiro, M. M., and Repert, D. A.: Allocation of extracellular enzymatic activities in relation to litter composition, N deposition, and mass loss, Biogeochemistry, 60, 6–22, https://doi.org/10.1023/A:1016541114786, 2002.
Soil Survey Staff: Keys to Soil Taxonomy, 11th Edn., USDA Natural Resources Conservation Service, Washington, DC 2010.
Stone, M. M., DeForest, J. L., and Plante, A. F.: Changes in extracellular enzyme activity and microbial community structure with soil depth at the Luquillo Critical Zone Observatory, Soil Biol. Biochem., 75, 240–241, https://doi.org/10.1016/j.soilbio.2014.04.017, 2014.
Tang, Y. Q., Zhang, X. Y., Li, D. D., Wang, H. M., Chen, F. S., Fu, X. L., Fang, J. M., Sun, X. M., and Yu, G. R.: Impacts of nitrogen and phosphorus additions on the abundance and community structure of ammonia oxidizers and denitrifying bacteria in Chinese fir plantations, Soil Biol. Biochem., 103, 284–293, https://doi.org/10.1016/j.soilbio.2016.09.001, 2016.
Tian, D. and Niu, S.: A global analysis of soil acidification caused by nitrogen addition, Environ. Res. Lett., 10 pp., 024019, https://doi.org/10.1088/1748-9326/10/2/024019, 2015.
Tian, X. F., Hu, H. W., Ding, Q., Song, M. H., Xu, X. L., Zheng, Y., and Guo, L. D.: Influence of nitrogen fertilization on soil ammonia oxidizer and denitrifier abundance, microbial biomass, and enzyme activities in an alpine meadow, Biol. Fert. Soils, 50, 703–713, https://doi.org/10.1007/s00374-013-0889-0, 2014.
Treseder, K. K.: Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies, Ecol. Lett., 11, 1114–1118, https://doi.org/10.1111/j.1461-0248.2008.01230.x, 2008.
Wang, H., Mo, J. M., Lu, X. K., Xue, J. H., Li, J., and Fang, Y. T.: Effects of elevated nitrogen deposition on soil microbial biomass carbon in major subtropical forests of southern China, Acta Ecologica Sinica, 4, 21–27, https://doi.org/10.1007/s11461-009-0013-7, 2008.
Weand, M. P., Arthur, M. A., Lovett, G. M., McCulley, R. L., and Weathers, K. C.: Effect of tree species and N additions on forest floor microbial communities and extracellular enzyme activities, Soil Biol. Biochem., 42, 2161–2171, https://doi.org/10.1016/j.soilbio.2010.08.012, 2010.
Wei, Y., Wang, Z. Q., Zhang, X. Y., Yang, H., Liu, X. Y., and Liu, W. J.: Enzyme activities and microbial communities in subtropical forest soil aggregates to Ammonium and Nitrate-Nitrogen additions, J. Resour. Ecol., 8, 258–267, https://doi.org/10.5814/j.issn.1674-764x.2017.03.006, 2017.
Willers, C., Jansen van Rensburg, P. J., and Claassens, S.: Phospholipid fatty acid profiling of microbial communities – a review of interpretations and recent applications, J. Appl. Microbiol., 119, 1207–1213, https://doi.org/10.1111/jam.12902, 2015.
Zhang, W. D., and Wang, S. L.: Effects of NH4+ and NO3− on litter and soil organic carbon decomposition in a Chinese fir plantation forest in South China, Soil Biol. Biochem., 47, 116–121, https://doi.org/10.1016/j.soilbio.2011.12.004, 2012.
Zhu, J. X., He, N. P., Wang, Q. F., Yuan, G. F., Wen, D., Yu, G. R., and Jia, Y. L.: The composition, spatial patterns, and influencing factors of atmospheric wet nitrogen deposition in Chinese terrestrial ecosystems, Sci. Total Environ., 511, 777–784, https://doi.org/10.1016/j.scitotenv.2014.12.038, 2015.
Short summary
Ammonium additions had stronger inhibition effects on soil microbial biomass of different communities than nitrate addition. However, inhibition effects of nitrate additions on P hydrolase were stronger than ammonium additions, but not on C- and N-hydrolase and oxidase. Ammonium additions decreased N-acquisition specific enzyme activities normalized by total microbial biomass, but increased P-acquisition specific enzyme activities. Different effects on soil pH may explain the different effects.
Ammonium additions had stronger inhibition effects on soil microbial biomass of different...
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