Articles | Volume 21, issue 2
https://doi.org/10.5194/bg-21-557-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-21-557-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
26 Jan 2024
Research article |
| 26 Jan 2024
| 26 Jan 2024
Observational relationships between ammonia, carbon dioxide and water vapor under a wide range of meteorological and turbulent conditions: RITA-2021 campaign
Ruben B. Schulte
Meteorology and Air Quality Group, Wageningen University & Research, P.O. Box 47, 6700 AA Wageningen, the Netherlands
Jordi Vilà-Guerau de Arellano
CORRESPONDING AUTHOR
Meteorology and Air Quality Group, Wageningen University & Research, P.O. Box 47, 6700 AA Wageningen, the Netherlands
Susanna Rutledge-Jonker
Department of Environmental Modeling, Sensing and Analysis, National Institute for Public Health and the Environment (RIVM), Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, the Netherlands
Shelley van der Graaf
Department of Environmental Modeling, Sensing and Analysis, National Institute for Public Health and the Environment (RIVM), Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, the Netherlands
Jun Zhang
TNO, Postbus 15, 1755 ZG Petten, the Netherlands
Margreet C. van Zanten
CORRESPONDING AUTHOR
Meteorology and Air Quality Group, Wageningen University & Research, P.O. Box 47, 6700 AA Wageningen, the Netherlands
Department of Environmental Modeling, Sensing and Analysis, National Institute for Public Health and the Environment (RIVM), Antonie van Leeuwenhoeklaan 9, 3721 MA Bilthoven, the Netherlands
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Tycho Jongenelen, Margreet van Zanten, Enrico Dammers, Roy Wichink Kruit, Arjan Hensen, Leon Geers, and Jan Willem Erisman
Atmos. Chem. Phys., 25, 4943–4963, https://doi.org/10.5194/acp-25-4943-2025, https://doi.org/10.5194/acp-25-4943-2025, 2025
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This article compares three ammonia (NH3) deposition models in a dune ecosystem and investigates the uncertainty of these models. The Zhang model aligned best with the measurements, whereas the DEPAC (DEPosition of Acidifying Compounds) and Massad models overestimated and underestimated the NH3 deposition respectively. The study found that NH3 exchange with wet plant leaves was an important but uncertain process. It offers recommendations to improve future models and suggests measurements to lower the existing uncertainty.
Sreehari Kizhuveettil, Jordi Vila-Guerau de Arellano, Martina Krämer, Armin Afchine, Luiz A. T. Machado, Martin Zöger, and Wiebke Frey
EGUsphere, https://doi.org/10.5194/egusphere-2025-1637, https://doi.org/10.5194/egusphere-2025-1637, 2025
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
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Aircraft measurements are used to investigate high-altitude downdrafts in tropical deep convective clouds. The cloud water present in the downdrafts and its intensity do not show any correlation. Surprisingly, downdrafts occurred in supersaturated regions, contradicting the classical view of subsaturated downdrafts. Up- and downdrafts of similar strength show similar particle size distributions. These findings shed new light on the interplay between deep convection dynamics and microphysics.
Robbert Petrus Johannes Moonen, Getachew Agmuas Adnew, Jordi Vilà-Guerau de Arellano, Oscar Karel Hartogensis, David Joan Bonell Fontas, Shujiro Komiya, Sam P. Jones, and Thomas Röckmann
EGUsphere, https://doi.org/10.5194/egusphere-2025-452, https://doi.org/10.5194/egusphere-2025-452, 2025
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
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Understory ejections are distinct turbulent features emerging in prime tall forest ecosystems. We share a method to isolate understory ejections based on H2O-CO2 anomalie quadrants. From these, we calculate the flux contributions of understory ejections and all flux quadrants. In addition we show that a distinctly depleted isotopic composition can be found in the ejected water vapour. Finally, we explored the role of clouds as a potential trigger for understory ejections.
Leon Geers, Ruud Janssen, Gudrun Thorkelsdottir, Jordi Vilà-Guerau de Arellano, and Martijn Schaap
EGUsphere, https://doi.org/10.5194/egusphere-2025-426, https://doi.org/10.5194/egusphere-2025-426, 2025
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High-resolution data on reactive nitrogen deposition are needed to inform cost-effective policies. Here, we describe the implementation of a dry deposition module into a large eddy simulation code. With this model, we are able to represent the turbulent exchange of tracers at the hectometer resolution. The model calculates the dispersion and deposition of NOx and NH3 in great spatial detail, clearly showing the influence of local land use patterns.
Felipe Lobos-Roco, Jordi Vilà-Guerau de Arellano, and Camilo del Río
Hydrol. Earth Syst. Sci., 29, 109–125, https://doi.org/10.5194/hess-29-109-2025, https://doi.org/10.5194/hess-29-109-2025, 2025
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Water resources are fundamental for the social, economic, and natural development of (semi-)arid regions. Precipitation decreases due to climate change obligate us to find new water resources. Fog harvesting (FH) emerges as a complementary resource in regions where it is abundant but untapped. This research proposes a model to estimate FH potential in coastal (semi-)arid regions. This model could have broader applicability worldwide in regions where FH could be a viable water source.
Arseniy Karagodin-Doyennel, Fredrik Jansson, Bart van Stratum, Hugo Denier van der Gon, Jordi Vilà-Guerau de Arellano, and Sander Houweling
EGUsphere, https://doi.org/10.5194/egusphere-2024-3721, https://doi.org/10.5194/egusphere-2024-3721, 2024
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We introduce a new simulation platform based on the Dutch Large-Eddy Simulation (DALES) to simulate carbon dioxide (CO2) emissions and their dispersion in the turbulent environments with hectometer resolution. This model incorporates both anthropogenic emission inventory and ecosystem exchanges. Simulation results for the main urban area in the Netherlands demonstrate a strong potential of DALES to enhance CO2 emission modeling, which is important for refining their reduction strategies.
Mary Rose Mangan, Jordi Vilà-Guerau de Arellano, Bart J. H. van Stratum, Marie Lothon, Guylaine Canut-Rocafort, and Oscar K. Hartogensis
EGUsphere, https://doi.org/10.5194/egusphere-2024-3000, https://doi.org/10.5194/egusphere-2024-3000, 2024
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Using observations and high-resolution turbulence modeling, we examine the influence of irrigation-driven surface heterogeneity on the atmospheric boundary layer (ABL). We employ different spatial scales of heterogeneity to explore how the influence of surface heterogeneity on the ABL within a single grid cell would change in higher resolution global models. We find that the height of the ABL is highly variable, and that the surface heterogeneity is felt least strongly in the middle of the ABL.
Luiz A. T. Machado, Jürgen Kesselmeier, Santiago Botía, Hella van Asperen, Meinrat O. Andreae, Alessandro C. de Araújo, Paulo Artaxo, Achim Edtbauer, Rosaria R. Ferreira, Marco A. Franco, Hartwig Harder, Sam P. Jones, Cléo Q. Dias-Júnior, Guido G. Haytzmann, Carlos A. Quesada, Shujiro Komiya, Jost Lavric, Jos Lelieveld, Ingeborg Levin, Anke Nölscher, Eva Pfannerstill, Mira L. Pöhlker, Ulrich Pöschl, Akima Ringsdorf, Luciana Rizzo, Ana M. Yáñez-Serrano, Susan Trumbore, Wanda I. D. Valenti, Jordi Vila-Guerau de Arellano, David Walter, Jonathan Williams, Stefan Wolff, and Christopher Pöhlker
Atmos. Chem. Phys., 24, 8893–8910, https://doi.org/10.5194/acp-24-8893-2024, https://doi.org/10.5194/acp-24-8893-2024, 2024
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Composite analysis of gas concentration before and after rainfall, during the day and night, gives insight into the complex relationship between trace gas variability and precipitation. The analysis helps us to understand the sources and sinks of trace gases within a forest ecosystem. It elucidates processes that are not discernible under undisturbed conditions and contributes to a deeper understanding of the trace gas life cycle and its intricate interactions with cloud dynamics in the Amazon.
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
Biogeosciences, 21, 3015–3039, https://doi.org/10.5194/bg-21-3015-2024, https://doi.org/10.5194/bg-21-3015-2024, 2024
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The ratio between atmospheric O2 and CO2 can be used to characterize the carbon balance at the surface. By combining a model and observations from the Hyytiälä forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange because large-scale processes such as entrainment confound this signal. We therefore recommend always using multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Raquel González-Armas, Jordi Vilà-Guerau de Arellano, Mary Rose Mangan, Oscar Hartogensis, and Hugo de Boer
Biogeosciences, 21, 2425–2445, https://doi.org/10.5194/bg-21-2425-2024, https://doi.org/10.5194/bg-21-2425-2024, 2024
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This paper investigates the water and CO2 exchange for an alfalfa field with observations and a model with spatial scales ranging from the stomata to the atmospheric boundary layer. To relate the environmental factors to the leaf gas exchange, we developed three equations that quantify how many of the temporal changes of the leaf gas exchange occur due to changes in the environmental variables. The novelty of the research resides in the capacity to dissect the dynamics of the leaf gas exchange.
Robbert P. J. Moonen, Getachew A. Adnew, Oscar K. Hartogensis, Jordi Vilà-Guerau de Arellano, David J. Bonell Fontas, and Thomas Röckmann
Atmos. Meas. Tech., 16, 5787–5810, https://doi.org/10.5194/amt-16-5787-2023, https://doi.org/10.5194/amt-16-5787-2023, 2023
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Isotope fluxes allow for net ecosystem gas exchange fluxes to be partitioned into sub-components like plant assimilation, respiration and transpiration, which can help us better understand the environmental drivers of each partial flux. We share the results of a field campaign isotope fluxes were derived using a combination of laser spectroscopy and eddy covariance. We found lag times and high frequency signal loss in the isotope fluxes we derived and present methods to correct for both.
Daan Swart, Jun Zhang, Shelley van der Graaf, Susanna Rutledge-Jonker, Arjan Hensen, Stijn Berkhout, Pascal Wintjen, René van der Hoff, Marty Haaima, Arnoud Frumau, Pim van den Bulk, Ruben Schulte, Margreet van Zanten, and Thomas van Goethem
Atmos. Meas. Tech., 16, 529–546, https://doi.org/10.5194/amt-16-529-2023, https://doi.org/10.5194/amt-16-529-2023, 2023
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During a 5-week comparison campaign, we tested two set-ups to measure half hourly ammonia fluxes. The eddy covariance and flux gradient systems showed very similar results when the upwind terrain was both homogeneous and free of obstacles. We discuss the technical performance and practical limitations of both systems. Measurements from these instruments can facilitate the study of processes behind ammonia deposition, an important contributor to eutrophication and acidificationin natural areas.
Kim A. P. Faassen, Linh N. T. Nguyen, Eadin R. Broekema, Bert A. M. Kers, Ivan Mammarella, Timo Vesala, Penelope A. Pickers, Andrew C. Manning, Jordi Vilà-Guerau de Arellano, Harro A. J. Meijer, Wouter Peters, and Ingrid T. Luijkx
Atmos. Chem. Phys., 23, 851–876, https://doi.org/10.5194/acp-23-851-2023, https://doi.org/10.5194/acp-23-851-2023, 2023
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The exchange ratio (ER) between atmospheric O2 and CO2 provides a useful tracer for separately estimating photosynthesis and respiration processes in the forest carbon balance. This is highly relevant to better understand the expected biosphere sink, which determines future atmospheric CO2 levels. We therefore measured O2, CO2, and their ER above a boreal forest in Finland and investigated their diurnal behaviour for a representative day, and we show the most suitable way to determine the ER.
Micael Amore Cecchini, Marco de Bruine, Jordi Vilà-Guerau de Arellano, and Paulo Artaxo
Atmos. Chem. Phys., 22, 11867–11888, https://doi.org/10.5194/acp-22-11867-2022, https://doi.org/10.5194/acp-22-11867-2022, 2022
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Shallow clouds (vertical extent up to 3 km height) are ubiquitous throughout the Amazon and are responsible for redistributing the solar heat and moisture vertically and horizontally. They are a key component of the water cycle because they can grow past the shallow phase to contribute significantly to the precipitation formation. However, they need favourable environmental conditions to grow. In this study, we analyse how changing wind patterns affect the development of such shallow clouds.
Felipe Lobos-Roco, Oscar Hartogensis, Francisco Suárez, Ariadna Huerta-Viso, Imme Benedict, Alberto de la Fuente, and Jordi Vilà-Guerau de Arellano
Hydrol. Earth Syst. Sci., 26, 3709–3729, https://doi.org/10.5194/hess-26-3709-2022, https://doi.org/10.5194/hess-26-3709-2022, 2022
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This research brings a multi-scale temporal analysis of evaporation in a saline lake of the Atacama Desert. Our findings reveal that evaporation is controlled differently depending on the timescale. Evaporation is controlled sub-diurnally by wind speed, regulated seasonally by radiation and modulated interannually by ENSO. Our research extends our understanding of evaporation, contributing to improving the climate change assessment and efficiency of water management in arid regions.
Ruben B. Schulte, Margreet C. van Zanten, Bart J. H. van Stratum, and Jordi Vilà-Guerau de Arellano
Atmos. Chem. Phys., 22, 8241–8257, https://doi.org/10.5194/acp-22-8241-2022, https://doi.org/10.5194/acp-22-8241-2022, 2022
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We present a fine-scale simulation framework, utilizing large-eddy simulations, to assess NH3 measurements influenced by boundary-layer dynamics and turbulent dispersion of a nearby emission source. The minimum required distance from an emission source differs for concentration and flux measurements, from 0.5–3.0 km and 0.75–4.5 km, respectively. The simulation framework presented here proves to be a powerful and versatile tool for future NH3 research at high spatio-temporal resolutions.
Shelley van der Graaf, Enrico Dammers, Arjo Segers, Richard Kranenburg, Martijn Schaap, Mark W. Shephard, and Jan Willem Erisman
Atmos. Chem. Phys., 22, 951–972, https://doi.org/10.5194/acp-22-951-2022, https://doi.org/10.5194/acp-22-951-2022, 2022
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CrIS NH3 satellite observations are assimilated into the LOTOS-EUROS model using two different methods. In the first method the data are used to fit spatially varying NH3 emission time factors. In the second method a local ensemble transform Kalman filter is used. Compared to in situ observations, combining both methods led to the most significant improvements in the modeled concentrations and deposition, illustrating the usefulness of CrIS NH3 to improve the spatiotemporal distribution of NH3.
Carlos Román-Cascón, Marie Lothon, Fabienne Lohou, Oscar Hartogensis, Jordi Vila-Guerau de Arellano, David Pino, Carlos Yagüe, and Eric R. Pardyjak
Geosci. Model Dev., 14, 3939–3967, https://doi.org/10.5194/gmd-14-3939-2021, https://doi.org/10.5194/gmd-14-3939-2021, 2021
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The type of vegetation (or land cover) and its status influence the heat and water transfers between the surface and the air, affecting the processes that develop in the atmosphere at different (but connected) spatiotemporal scales. In this work, we investigate how these transfers are affected by the way the surface is represented in a widely used weather model. The results encourage including realistic high-resolution and updated land cover databases in models to improve their predictions.
Felipe Lobos-Roco, Oscar Hartogensis, Jordi Vilà-Guerau de Arellano, Alberto de la Fuente, Ricardo Muñoz, José Rutllant, and Francisco Suárez
Atmos. Chem. Phys., 21, 9125–9150, https://doi.org/10.5194/acp-21-9125-2021, https://doi.org/10.5194/acp-21-9125-2021, 2021
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We investigate the influence of regional atmospheric circulation on the evaporation of a saline lake in the Altiplano region of the Atacama Desert through a field experiment and regional modeling. Our results show that evaporation is controlled by two regimes: (1) in the morning by local conditions with low evaporation rates and low wind speed and (2) in the afternoon with high evaporation rates and high wind speed. Afternoon winds are connected to the regional Pacific Ocean–Andes flow.
Jordi Vilà-Guerau de Arellano, Patrizia Ney, Oscar Hartogensis, Hugo de Boer, Kevin van Diepen, Dzhaner Emin, Geiske de Groot, Anne Klosterhalfen, Matthias Langensiepen, Maria Matveeva, Gabriela Miranda-García, Arnold F. Moene, Uwe Rascher, Thomas Röckmann, Getachew Adnew, Nicolas Brüggemann, Youri Rothfuss, and Alexander Graf
Biogeosciences, 17, 4375–4404, https://doi.org/10.5194/bg-17-4375-2020, https://doi.org/10.5194/bg-17-4375-2020, 2020
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The CloudRoots field experiment has obtained an open comprehensive observational data set that includes soil, plant, and atmospheric variables to investigate the interactions between a heterogeneous land surface and its overlying atmospheric boundary layer, including the rapid perturbations of clouds in evapotranspiration. Our findings demonstrate that in order to understand and represent diurnal variability, we need to measure and model processes from the leaf to the landscape scales.
Shelley C. van der Graaf, Richard Kranenburg, Arjo J. Segers, Martijn Schaap, and Jan Willem Erisman
Geosci. Model Dev., 13, 2451–2474, https://doi.org/10.5194/gmd-13-2451-2020, https://doi.org/10.5194/gmd-13-2451-2020, 2020
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Chemical transport models (CTMs) are important tools to determine the fate of reactive nitrogen (Nr) emissions. The parameterization of the surface–atmosphere exchange in CTMs is often only linked to fixed, land-use-dependent values. In this paper, we present an approach to derive more realistic, dynamic leaf area index (LAI) and roughness length (z0) input maps using multiple satellite products. We evaluate the effect on Nr concentration and deposition fields modelled in the LOTOS-EUROS CTM.
Xabier Pedruzo-Bagazgoitia, Stephan R. de Roode, Bianca Adler, Karmen Babić, Cheikh Dione, Norbert Kalthoff, Fabienne Lohou, Marie Lothon, and Jordi Vilà-Guerau de Arellano
Atmos. Chem. Phys., 20, 2735–2754, https://doi.org/10.5194/acp-20-2735-2020, https://doi.org/10.5194/acp-20-2735-2020, 2020
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Using a high-resolution model we simulate the transition from night to day clouds on southern West Africa using observations from the DACCIWA project. We find that the radiative effects of clouds help mantain a thick cloud layer in the night, while the mixing of cloud air with air above during the day, aided by moisture and heat fluxes at the surface, thins this layer and promotes its transition to other clouds. The effect of changing wind with height accelerates the transition.
Marco de Bruine, Maarten Krol, Jordi Vilà-Guerau de Arellano, and Thomas Röckmann
Geosci. Model Dev., 12, 5177–5196, https://doi.org/10.5194/gmd-12-5177-2019, https://doi.org/10.5194/gmd-12-5177-2019, 2019
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An aerosol scheme with multiple aerosol species is introduced in the Dutch Atmospheric Large-Eddy Simulation model (DALES) and focused to simulate the feedback of aerosol–cloud interaction (ACI) on the aerosol population. Cloud aerosol processing is found to be sensitive to the numerical method, while removal by precipitation is more stable. How ACI increases or decreases the mean aerosol size depends on the balance between the evaporation of clouds/rain and ultimate removal by precipitation.
Pierre Gentine, Adam Massmann, Benjamin R. Lintner, Sayed Hamed Alemohammad, Rong Fu, Julia K. Green, Daniel Kennedy, and Jordi Vilà-Guerau de Arellano
Hydrol. Earth Syst. Sci., 23, 4171–4197, https://doi.org/10.5194/hess-23-4171-2019, https://doi.org/10.5194/hess-23-4171-2019, 2019
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Land–atmosphere interactions are key for the exchange of water, energy, and carbon dioxide, especially in the tropics. We here review some of the recent findings on land–atmosphere interactions in the tropics and where we see potential challenges and paths forward.
Enrico Dammers, Chris A. McLinden, Debora Griffin, Mark W. Shephard, Shelley Van Der Graaf, Erik Lutsch, Martijn Schaap, Yonatan Gainairu-Matz, Vitali Fioletov, Martin Van Damme, Simon Whitburn, Lieven Clarisse, Karen Cady-Pereira, Cathy Clerbaux, Pierre Francois Coheur, and Jan Willem Erisman
Atmos. Chem. Phys., 19, 12261–12293, https://doi.org/10.5194/acp-19-12261-2019, https://doi.org/10.5194/acp-19-12261-2019, 2019
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Ammonia is an essential molecule in the environment, but at its current levels it is unsustainable. However, the emissions are highly uncertain. We explore the use of satellites to estimate the ammonia lifetime and emissions around point sources to help improve the budget. The same method applied to different satellite instruments shows consistent results. Comparison to the emission inventories shows that those are underestimating emissions of point sources by on average a factor of 2.5.
Hendrik Wouters, Irina Y. Petrova, Chiel C. van Heerwaarden, Jordi Vilà-Guerau de Arellano, Adriaan J. Teuling, Vicky Meulenberg, Joseph A. Santanello, and Diego G. Miralles
Geosci. Model Dev., 12, 2139–2153, https://doi.org/10.5194/gmd-12-2139-2019, https://doi.org/10.5194/gmd-12-2139-2019, 2019
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The free software CLASS4GL (http://class4gl.eu) is designed to investigate the dynamic atmospheric boundary layer (ABL) with weather balloons. It mines observational data from global radio soundings, satellite and reanalysis data from the last 40 years to constrain and initialize an ABL model and automizes multiple experiments in parallel. CLASS4GL aims at fostering a better understanding of land–atmosphere feedbacks and the drivers of extreme weather.
Jon Ander Arrillaga, Carlos Yagüe, Carlos Román-Cascón, Mariano Sastre, Maria Antonia Jiménez, Gregorio Maqueda, and Jordi Vilà-Guerau de Arellano
Atmos. Chem. Phys., 19, 4615–4635, https://doi.org/10.5194/acp-19-4615-2019, https://doi.org/10.5194/acp-19-4615-2019, 2019
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Thermally driven downslope winds develop in mountainous areas under a weak large-scale forcing and clear skies. In this work, we find that their onset time and intensity are closely connected with both the large-scale wind and soil moisture. We also show how the distinct downslope intensities shape the turbulent and thermal features of the nocturnal atmosphere. The analysis concludes that the downslope–turbulence interaction and the horizontal transport explain the important CO2 variability.
Juhi Nagori, Ruud H. H. Janssen, Juliane L. Fry, Maarten Krol, Jose L. Jimenez, Weiwei Hu, and Jordi Vilà-Guerau de Arellano
Atmos. Chem. Phys., 19, 701–729, https://doi.org/10.5194/acp-19-701-2019, https://doi.org/10.5194/acp-19-701-2019, 2019
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Secondary organic aerosol (SOA) is produced through a complex interaction of sunlight, volatile organic compounds emitted from trees, anthropogenic emissions, and atmospheric chemistry. We are able to successfully model the formation and diurnal evolution of SOA using a model that takes into consideration the surface and boundary layer dynamics (1–2 km from the surface) and photochemistry above the southeastern US with data collected during the SOAS campaign to constrain the model.
Shelley C. van der Graaf, Enrico Dammers, Martijn Schaap, and Jan Willem Erisman
Atmos. Chem. Phys., 18, 13173–13196, https://doi.org/10.5194/acp-18-13173-2018, https://doi.org/10.5194/acp-18-13173-2018, 2018
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A combination of NH3 satellite observations from IASI and the LOTOS-EUROS model is used to derive NH3 surface concentrations and dry deposition fluxes over Europe. The results were evaluated using surface measurements (EMEP, LML, MAN) and a sensitivity study. This is a first step in further integration of surface measurements, satellite observations and an atmospheric transport model to derive accurate NH3 surface concentrations and dry deposition fluxes on a large scale.
Metodija M. Shapkalijevski, Huug G. Ouwersloot, Arnold F. Moene, and Jordi Vilà-Guerau de Arrellano
Atmos. Chem. Phys., 17, 1623–1640, https://doi.org/10.5194/acp-17-1623-2017, https://doi.org/10.5194/acp-17-1623-2017, 2017
Jason Beringer, Lindsay B. Hutley, Ian McHugh, Stefan K. Arndt, David Campbell, Helen A. Cleugh, James Cleverly, Víctor Resco de Dios, Derek Eamus, Bradley Evans, Cacilia Ewenz, Peter Grace, Anne Griebel, Vanessa Haverd, Nina Hinko-Najera, Alfredo Huete, Peter Isaac, Kasturi Kanniah, Ray Leuning, Michael J. Liddell, Craig Macfarlane, Wayne Meyer, Caitlin Moore, Elise Pendall, Alison Phillips, Rebecca L. Phillips, Suzanne M. Prober, Natalia Restrepo-Coupe, Susanna Rutledge, Ivan Schroder, Richard Silberstein, Patricia Southall, Mei Sun Yee, Nigel J. Tapper, Eva van Gorsel, Camilla Vote, Jeff Walker, and Tim Wardlaw
Biogeosciences, 13, 5895–5916, https://doi.org/10.5194/bg-13-5895-2016, https://doi.org/10.5194/bg-13-5895-2016, 2016
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OzFlux is the regional Australian and New Zealand flux tower network that aims to provide a continental-scale national facility to monitor and assess trends, and improve predictions, of Australia’s terrestrial biosphere and climate. We describe the evolution, design, and status as well as an overview of data processing. We suggest that a synergistic approach is required to address all of the spatial, ecological, human, and cultural challenges of managing Australian ecosystems.
Frederik Schrader, Christian Brümmer, Chris R. Flechard, Roy J. Wichink Kruit, Margreet C. van Zanten, Undine Zöll, Arjan Hensen, and Jan Willem Erisman
Atmos. Chem. Phys., 16, 13417–13430, https://doi.org/10.5194/acp-16-13417-2016, https://doi.org/10.5194/acp-16-13417-2016, 2016
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We found a systematic mismatch of modeled and measured NH3 fluxes using two state-of-the-art dry deposition models and data from five sites in Europe. Results of our analysis indicate a too large minimum non-stomatal resistance and too strong temperature response in the parameterization of a unidirectional surface–atmosphere exchange scheme, as well as room for improvement on the emission potential parameterization of a bidirectional model, both directly impacting predicted NH3 exchange fluxes.
Luping Su, Edward G. Patton, Jordi Vilà-Guerau de Arellano, Alex B. Guenther, Lisa Kaser, Bin Yuan, Fulizi Xiong, Paul B. Shepson, Li Zhang, David O. Miller, William H. Brune, Karsten Baumann, Eric Edgerton, Andrew Weinheimer, Pawel K. Misztal, Jeong-Hoo Park, Allen H. Goldstein, Kate M. Skog, Frank N. Keutsch, and John E. Mak
Atmos. Chem. Phys., 16, 7725–7741, https://doi.org/10.5194/acp-16-7725-2016, https://doi.org/10.5194/acp-16-7725-2016, 2016
C. Darbieu, F. Lohou, M. Lothon, J. Vilà-Guerau de Arellano, F. Couvreux, P. Durand, D. Pino, E. G. Patton, E. Nilsson, E. Blay-Carreras, and B. Gioli
Atmos. Chem. Phys., 15, 10071–10086, https://doi.org/10.5194/acp-15-10071-2015, https://doi.org/10.5194/acp-15-10071-2015, 2015
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A case study of the BLLAST experiment is considered to explore the decay of turbulence that occurs in the convective boundary layer over land during the afternoon. Based on observations and on a large-eddy simulation, the analysis reveals two phases in the afternoon: a first quasi-stationary phase when the turbulent kinetic energy slowly decays without significant change in the turbulence structure and a second phase of more rapid decay with a change in spectral turbulence characteristics.
D. E. Lolkema, H. Noordijk, A. P. Stolk, R. Hoogerbrugge, M. C. van Zanten, and W. A. J. van Pul
Biogeosciences, 12, 5133–5142, https://doi.org/10.5194/bg-12-5133-2015, https://doi.org/10.5194/bg-12-5133-2015, 2015
H. P. Pietersen, J. Vilà-Guerau de Arellano, P. Augustin, A. van de Boer, O. de Coster, H. Delbarre, P. Durand, M. Fourmentin, B. Gioli, O. Hartogensis, F. Lohou, M. Lothon, H. G. Ouwersloot, D. Pino, and J. Reuder
Atmos. Chem. Phys., 15, 4241–4257, https://doi.org/10.5194/acp-15-4241-2015, https://doi.org/10.5194/acp-15-4241-2015, 2015
M. Combe, J. Vilà-Guerau de Arellano, H. G. Ouwersloot, C. M. J. Jacobs, and W. Peters
Biogeosciences, 12, 103–123, https://doi.org/10.5194/bg-12-103-2015, https://doi.org/10.5194/bg-12-103-2015, 2015
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This study investigates the interactions among the carbon, water and heat cycles above a maize field at the diurnal scale. We couple two land-surface schemes, corresponding to two different modelling approaches, to the same atmospheric boundary-layer (ABL) model. We find the simpler meteorological approach best reproduces the surface and upper-air observations. Finally, we show that the interaction of subsidence with ABL dynamics is key to explain the daytime atmospheric CO2 budget.
M. Lothon, F. Lohou, D. Pino, F. Couvreux, E. R. Pardyjak, J. Reuder, J. Vilà-Guerau de Arellano, P Durand, O. Hartogensis, D. Legain, P. Augustin, B. Gioli, D. H. Lenschow, I. Faloona, C. Yagüe, D. C. Alexander, W. M. Angevine, E Bargain, J. Barrié, E. Bazile, Y. Bezombes, E. Blay-Carreras, A. van de Boer, J. L. Boichard, A. Bourdon, A. Butet, B. Campistron, O. de Coster, J. Cuxart, A. Dabas, C. Darbieu, K. Deboudt, H. Delbarre, S. Derrien, P. Flament, M. Fourmentin, A. Garai, F. Gibert, A. Graf, J. Groebner, F. Guichard, M. A. Jiménez, M. Jonassen, A. van den Kroonenberg, V. Magliulo, S. Martin, D. Martinez, L. Mastrorillo, A. F. Moene, F. Molinos, E. Moulin, H. P. Pietersen, B. Piguet, E. Pique, C. Román-Cascón, C. Rufin-Soler, F. Saïd, M. Sastre-Marugán, Y. Seity, G. J. Steeneveld, P. Toscano, O. Traullé, D. Tzanos, S. Wacker, N. Wildmann, and A. Zaldei
Atmos. Chem. Phys., 14, 10931–10960, https://doi.org/10.5194/acp-14-10931-2014, https://doi.org/10.5194/acp-14-10931-2014, 2014
J. A. Adame, M. Martínez, M. Sorribas, P. J. Hidalgo, H. Harder, J.-M. Diesch, F. Drewnick, W. Song, J. Williams, V. Sinha, M. A. Hernández-Ceballos, J. Vilà-Guerau de Arellano, R. Sander, Z. Hosaynali-Beygi, H. Fischer, J. Lelieveld, and B. De la Morena
Atmos. Chem. Phys., 14, 2325–2342, https://doi.org/10.5194/acp-14-2325-2014, https://doi.org/10.5194/acp-14-2325-2014, 2014
Related subject area
Biogeochemistry: Air - Land Exchange
Peltigera lichen thalli produce highly potent ice-nucleating agents
Constraining 2010–2020 Amazonian carbon flux estimates with satellite solar-induced fluorescence (SIF)
An elucidatory model of oxygen's partial pressure inside substomatal cavities
Aggregation of ice-nucleating macromolecules from Betula pendula pollen determines ice nucleation efficiency
Quantifying the soil sink of atmospheric Hydrogen: a full year of field measurements from grassland and forest soils in the UK
Evaluating adsorption isotherm models for determining the partitioning of ammonium between soil and soil pore water in environmental soil samples
Similar freezing spectra of particles in plant canopies and in the air at a high-altitude site
Anticorrelation of net uptake of atmospheric CO2 by the world ocean and terrestrial biosphere in current carbon cycle models
Altered Seasonal Sensitivity of Net Ecosystem Exchange to Controls Driven by Nutrient Balances in a Semi-arid Savanna
Impact of meteorological conditions on the biogenic volatile organic compound (BVOC) emission rate from eastern Mediterranean vegetation under drought
Monitoring cropland daily carbon dioxide exchange at field scales with Sentinel-2 satellite imagery
Compound soil and atmospheric drought (CSAD) events and CO2 fluxes of a mixed deciduous forest: the occurrence, impact, and temporal contribution of main drivers
Potential of carbon uptake and local aerosol production in boreal and hemi-boreal ecosystems across Finland and in Estonia
The influence of plant water stress on vegetation–atmosphere exchanges: implications for ozone modelling
High interspecific variability in ice nucleation activity suggests pollen ice nucleators are incidental
Using automated machine learning for the upscaling of gross primary productivity
Interpretability of negative latent heat fluxes from eddy covariance measurements in dry conditions
Forest-floor respiration, N2O fluxes, and CH4 fluxes in a subalpine spruce forest: drivers and annual budgets
Enhanced net CO2 exchange of a semideciduous forest in the southern Amazon due to diffuse radiation from biomass burning
Environmental controls of winter soil carbon dioxide fluxes in boreal and tundra environments
Origin of secondary fatty alcohols in atmospheric aerosols in a cool–temperate forest based on their mass size distributions
Sap flow and leaf gas exchange response to a drought and heatwave in urban green spaces in a Nordic city
Changes in biogenic volatile organic compound emissions in response to the El Niño–Southern Oscillation
Rethinking the deployment of static chambers for CO2 flux measurement in dry desert soils
Lichen species across Alaska produce highly active and stable ice nucleators
A differentiable, physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Snow–vegetation–atmosphere interactions in alpine tundra
Synergy between TROPOMI sun-induced chlorophyll fluorescence and MODIS spectral reflectance for understanding the dynamics of gross primary productivity at Integrated Carbon Observatory System (ICOS) ecosystem flux sites
Atmospheric deposition of reactive nitrogen to a deciduous forest in the southern Appalachian Mountains
Tropical cyclones facilitate recovery of forest leaf area from dry spells in East Asia
Minor contributions of daytime monoterpenes are major contributors to atmospheric reactivity
Using atmospheric observations to quantify annual biogenic carbon dioxide fluxes on the Alaska North Slope
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part II: Modeling annual budgets
Growth and actual leaf temperature modulate CO2 responsiveness of monoterpene emissions from holm oak in opposite ways
Multi-year observations reveal a larger than expected autumn respiration signal across northeast Eurasia
Reviews and syntheses: VOC emissions from soil cover in boreal and temperate natural ecosystems of the Northern Hemisphere
Internal tree cycling and atmospheric archiving of mercury: examination with concentration and stable isotope analyses
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
CO2 and CH4 exchanges between moist moss tundra and atmosphere on Kapp Linné, Svalbard
Recent extreme drought events in the Amazon rainforest: assessment of different precipitation and evapotranspiration datasets and drought indicators
Variability and uncertainty in flux-site-scale net ecosystem exchange simulations based on machine learning and remote sensing: a systematic evaluation
Update of a biogeochemical model with process-based algorithms to predict ammonia volatilization from fertilized cultivated uplands and rice paddy fields
Massive warming-induced carbon loss from subalpine grassland soils in an altitudinal transplantation experiment
Climatic variation drives loss and restructuring of carbon and nitrogen in boreal forest wildfire
Gaps in network infrastructure limit our understanding of biogenic methane emissions for the United States
Changes of the aerodynamic characteristics of a flux site after an extensive windthrow
Carbon sequestration potential of street tree plantings in Helsinki
Technical note: Incorporating expert domain knowledge into causal structure discovery workflows
Sensitivity of biomass burning emissions estimates to land surface information
A convolutional neural network for spatial downscaling of satellite-based solar-induced chlorophyll fluorescence (SIFnet)
Rosemary J. Eufemio, Galit Renzer, Mariah Rojas, Jolanta Miadlikowska, Todd L. Sformo, François Lutzoni, Boris A. Vinatzer, and Konrad Meister
Biogeosciences, 22, 2087–2096, https://doi.org/10.5194/bg-22-2087-2025, https://doi.org/10.5194/bg-22-2087-2025, 2025
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Biological ice nucleation plays key roles in organism survival and in shaping Earth’s atmospheric patterns. Our pan-American screening of Peltigera lichens reveals that the lichen thalli produce highly active ice nucleators (INs) resistant to freeze–thaw cycles. Notably, a pure fungal culture from Peltigera britannica released the most potent INs reported to date. Given the global abundance of these lichens, the INs may be important contributors to atmospheric processes.
Archana Dayalu, Marikate Mountain, Bharat Rastogi, John B. Miller, and Luciana Gatti
Biogeosciences, 22, 1509–1528, https://doi.org/10.5194/bg-22-1509-2025, https://doi.org/10.5194/bg-22-1509-2025, 2025
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The Amazon is facing unprecedented disturbance. Determining trends in Amazonia's carbon balance and its sensitivity to disturbance requires reliable vegetation models that adequately capture how its ecosystems exchange carbon with the atmosphere. Using ground- and satellite-based ecosystem products, we present an improved model of land–atmosphere vegetation carbon exchange across the Amazon. Our model agrees with independent aircraft observations from different locations.
Andrew S. Kowalski
Biogeosciences, 22, 785–789, https://doi.org/10.5194/bg-22-785-2025, https://doi.org/10.5194/bg-22-785-2025, 2025
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The laws of physics show that leaf oxygen is not photosynthetically enriched but extremely dilute due to the overwhelming effects of humidification. This challenges the prevailing diffusion-only paradigm regarding leaf gas exchanges because non-diffusive transport is required. Such transport also explains why fluxes of carbon dioxide and water vapour become decoupled at very high temperatures, as has been observed but not explained by plant physiologists.
Florian Wieland, Nadine Bothen, Ralph Schwidetzky, Teresa M. Seifried, Paul Bieber, Ulrich Pöschl, Konrad Meister, Mischa Bonn, Janine Fröhlich-Nowoisky, and Hinrich Grothe
Biogeosciences, 22, 103–115, https://doi.org/10.5194/bg-22-103-2025, https://doi.org/10.5194/bg-22-103-2025, 2025
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Betula pendula is a widespread birch tree species containing ice nucleation agents that can trigger the freezing of cloud droplets and thereby alter the evolution of clouds. Our study identifies three distinct ice-nucleating macromolecule (INM) aggregates of varying size that can nucleate ice at temperatures up to –5.4°C. Our findings suggest that these vegetation-derived particles may influence atmospheric processes, weather, and climate more strongly than previously thought.
Nicholas Cowan, Toby Roberts, Mark Hanlon, Aurelia Bezanger, Galina Toteva, Alex Tweedie, Karen Yeung, Ajinkya Deshpande, Peter Levy, Ute Skiba, Eiko Nemitz, and Julia Drewer
EGUsphere, https://doi.org/10.5194/egusphere-2024-3654, https://doi.org/10.5194/egusphere-2024-3654, 2024
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We measured soil hydrogen (H2) fluxes from two field sites, a managed grassland and a planted deciduous woodland, with flux measurements of H2 covering full seasonal cycles. We estimate annual H2 uptake of -3.1 ± 0.1 and -12.0 ± 0.4 kg H2 ha-1 yr-1 for the grassland and woodland sites, respectively. Soil moisture was found to be the primary driver of H2 uptake, with the clay content of the soils providing a physical barrier which limited H2 uptake.
Matthew G. Davis, Kevin Yan, and Jennifer G. Murphy
Biogeosciences, 21, 5381–5392, https://doi.org/10.5194/bg-21-5381-2024, https://doi.org/10.5194/bg-21-5381-2024, 2024
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Ammonia applied as fertilizer can volatilize into the atmosphere. This can threaten vulnerable ecosystems and human health. We investigated the partitioning of ammonia between an immobile adsorbed phase and mobile aqueous phase using several adsorption models. Using the Temkin model we determined that previous approaches to this issue may overestimate the quantity available for exchange by a factor of 5–20, suggesting that ammonia emissions from soil may be overestimated.
Annika Einbock and Franz Conen
Biogeosciences, 21, 5219–5231, https://doi.org/10.5194/bg-21-5219-2024, https://doi.org/10.5194/bg-21-5219-2024, 2024
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A small fraction of particles found at great heights in the atmosphere can freeze cloud droplets at temperatures of ≥ −10 °C and thus influence cloud properties. We provide a novel type of evidence that plant canopies are a major source of such biological ice-nucleating particles in the air above the Alps, potentially affecting mixed-phase cloud development.
Stephen E. Schwartz
Biogeosciences, 21, 5045–5057, https://doi.org/10.5194/bg-21-5045-2024, https://doi.org/10.5194/bg-21-5045-2024, 2024
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Anticorrelation in uptake of atmospheric CO2 following pulse emission or abrupt cessation of emissions is examined in two key model intercomparison studies. In both studies net transfer coefficients from the atmosphere to the world ocean and the terrestrial biosphere are anticorrelated across models, reducing inter-model diversity in decrease of atmospheric CO2 following the perturbation, increasing uncertainties of global warming potentials and consequences of prospective emission reductions.
Laura Dénise Nadolski, Tarek Sebastian El Madany, Jacob Allen Nelson, Arnaud Carrara, Gerardo Moreno, Richard K. F. Nair, Yunpeng Luo, Anke Hildebrandt, Victor Rolo, Markus Reichstein, and Sung-Ching Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-3190, https://doi.org/10.5194/egusphere-2024-3190, 2024
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Semi-arid ecosystems are crucial for Earth's carbon balance and are sensitive to changes in nitrogen (N) and phosphorus (P) levels. Their carbon dynamics are complex and not fully understood. We studied how long-term nutrient changes affect carbon exchange. In summer, N+P changed plant composition and productivity. In transitional seasons, carbon exchange was less weather-dependent with N. Adding N and N+P are increasing carbon exchange variability, driven by grass greenness.
Qian Li, Gil Lerner, Einat Bar, Efraim Lewinsohn, and Eran Tas
Biogeosciences, 21, 4133–4147, https://doi.org/10.5194/bg-21-4133-2024, https://doi.org/10.5194/bg-21-4133-2024, 2024
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Our research indicates that instantaneous changes in meteorological parameters better reflect drought-induced changes in the emission rates of biogenic volatile organic compounds (BVOCs) from natural vegetation than their absolute values. However, following a small amount of irrigation, this trend became more moderate or reversed, accompanied by a dramatic increase in BVOC emission rates. These findings advance our understanding of BVOC emissions under climate change.
Pia Gottschalk, Aram Kalhori, Zhan Li, Christian Wille, and Torsten Sachs
Biogeosciences, 21, 3593–3616, https://doi.org/10.5194/bg-21-3593-2024, https://doi.org/10.5194/bg-21-3593-2024, 2024
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To improve the accuracy of spatial carbon exchange estimates, we evaluated simple linear models for net ecosystem exchange (NEE) and gross primary productivity (GPP) and how they can be used to upscale the CO2 exchange of agricultural fields. The models are solely driven by Sentinel-2-derived vegetation indices (VIs). Evaluations show that different VIs have variable power to estimate NEE and GPP of crops in different years. The overall performance is as good as results from complex crop models.
Liliana Scapucci, Ankit Shekhar, Sergio Aranda-Barranco, Anastasiia Bolshakova, Lukas Hörtnagl, Mana Gharun, and Nina Buchmann
Biogeosciences, 21, 3571–3592, https://doi.org/10.5194/bg-21-3571-2024, https://doi.org/10.5194/bg-21-3571-2024, 2024
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Forests face increased exposure to “compound soil and atmospheric drought” (CSAD) events due to global warming. We examined the impacts and drivers of CO2 fluxes during CSAD events at multiple layers of a deciduous forest over 18 years. Results showed reduced net ecosystem productivity and forest-floor respiration during CSAD events, mainly driven by soil and atmospheric drought. This unpredictability in forest CO2 fluxes jeopardises reforestation projects aimed at mitigating CO2 emissions.
Piaopiao Ke, Anna Lintunen, Pasi Kolari, Annalea Lohila, Santeri Tuovinen, Janne Lampilahti, Roseline Thakur, Maija Peltola, Otso Peräkylä, Tuomo Nieminen, Ekaterina Ezhova, Mari Pihlatie, Asta Laasonen, Markku Koskinen, Helena Rautakoski, Laura Heimsch, Tom Kokkonen, Aki Vähä, Ivan Mammarella, Steffen Noe, Jaana Bäck, Veli-Matti Kerminen, and Markku Kulmala
EGUsphere, https://doi.org/10.5194/egusphere-2024-1967, https://doi.org/10.5194/egusphere-2024-1967, 2024
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Our research explores diverse ecosystems’ role in climate cooling via the concept of CarbonSink+ Potential. We measured CO2 uptake and loaal aerosol production in forests, farms, peatlands, urban gardens, and coastal areas across Finland and Estonia. The long-term data reveal that while forests are vital regarding CarbonSink+ Potential, farms and urban gardens also play significant roles. These insights can help optimize management policy of natural resource to mitigate global warming.
Tamara Emmerichs, Yen-Sen Lu, and Domenico Taraborrelli
Biogeosciences, 21, 3251–3269, https://doi.org/10.5194/bg-21-3251-2024, https://doi.org/10.5194/bg-21-3251-2024, 2024
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We assess the representation of the plant response to surface water in a global atmospheric chemistry model. This sensitivity is crucial for the return of precipitation back into the atmosphere and thus significantly impacts the representation of weather as well as air quality. The newly implemented response function reduces this process and has a better comparison with satellite observations. This yields a higher intensity of unusual warm periods and higher production of air pollutants.
Nina L. H. Kinney, Charles A. Hepburn, Matthew I. Gibson, Daniel Ballesteros, and Thomas F. Whale
Biogeosciences, 21, 3201–3214, https://doi.org/10.5194/bg-21-3201-2024, https://doi.org/10.5194/bg-21-3201-2024, 2024
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Molecules released from plant pollen induce the formation of ice from supercooled water at temperatures warm enough to suggest an underlying function for this activity. In this study we show that ice nucleators are ubiquitous in pollen. We suggest the molecules responsible fulfil some unrelated biological function and nucleate ice incidentally. The ubiquity of ice-nucleating molecules in pollen and particularly active examples reveal a greater potential for pollen to impact weather and climate.
Max Gaber, Yanghui Kang, Guy Schurgers, and Trevor Keenan
Biogeosciences, 21, 2447–2472, https://doi.org/10.5194/bg-21-2447-2024, https://doi.org/10.5194/bg-21-2447-2024, 2024
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Gross primary productivity (GPP) describes the photosynthetic carbon assimilation, which plays a vital role in the carbon cycle. We can measure GPP locally, but producing larger and continuous estimates is challenging. Here, we present an approach to extrapolate GPP to a global scale using satellite imagery and automated machine learning. We benchmark different models and predictor variables and achieve an estimate that can capture 75 % of the variation in GPP.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek Sebastian El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
Biogeosciences, 21, 2051–2085, https://doi.org/10.5194/bg-21-2051-2024, https://doi.org/10.5194/bg-21-2051-2024, 2024
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Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
Luana Krebs, Susanne Burri, Iris Feigenwinter, Mana Gharun, Philip Meier, and Nina Buchmann
Biogeosciences, 21, 2005–2028, https://doi.org/10.5194/bg-21-2005-2024, https://doi.org/10.5194/bg-21-2005-2024, 2024
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This study explores year-round forest-floor greenhouse gas (GHG) fluxes in a Swiss spruce forest. Soil temperature and snow depth affected forest-floor respiration, while CH4 uptake was linked to snow cover. Negligible N2O fluxes were observed. In 2022, a warm year, CO2 emissions notably increased. The study suggests rising forest-floor GHG emissions due to climate change, impacting carbon sink behavior. Thus, for future forest management, continuous year-round GHG flux measurements are crucial.
Simone Rodrigues, Glauber Cirino, Demerval Moreira, Andrea Pozzer, Rafael Palácios, Sung-Ching Lee, Breno Imbiriba, José Nogueira, Maria Isabel Vitorino, and George Vourlitis
Biogeosciences, 21, 843–868, https://doi.org/10.5194/bg-21-843-2024, https://doi.org/10.5194/bg-21-843-2024, 2024
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The radiative effects of atmospheric particles are still unknown for a wide variety of species and types of vegetation present in Amazonian biomes. We examined the effects of aerosols on solar radiation and their impacts on photosynthesis in an area of semideciduous forest in the southern Amazon Basin. Under highly smoky-sky conditions, our results show substantial photosynthetic interruption (20–70 %), attributed specifically to the decrease in solar radiation and leaf canopy temperature.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Carolina Voigt, Nick Rutter, Paul Mann, Jean-Daniel Sylvain, and Alexandre Roy
Biogeosciences, 20, 5087–5108, https://doi.org/10.5194/bg-20-5087-2023, https://doi.org/10.5194/bg-20-5087-2023, 2023
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We present an analysis of soil CO2 emissions in boreal and tundra regions during the non-growing season. We show that when the soil is completely frozen, soil temperature is the main control on CO2 emissions. When the soil is around the freezing point, with a mix of liquid water and ice, the liquid water content is the main control on CO2 emissions. This study highlights that the vegetation–snow–soil interactions must be considered to understand soil CO2 emissions during the non-growing season.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
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Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Joyson Ahongshangbam, Liisa Kulmala, Jesse Soininen, Yasmin Frühauf, Esko Karvinen, Yann Salmon, Anna Lintunen, Anni Karvonen, and Leena Järvi
Biogeosciences, 20, 4455–4475, https://doi.org/10.5194/bg-20-4455-2023, https://doi.org/10.5194/bg-20-4455-2023, 2023
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Urban vegetation is important for removing urban CO2 emissions and cooling. We studied the response of urban trees' functions (photosynthesis and transpiration) to a heatwave and drought at four urban green areas in the city of Helsinki. We found that tree water use was increased during heatwave and drought periods, but there was no change in the photosynthesis rates. The heat and drought conditions were severe at the local scale but were not excessive enough to restrict urban trees' functions.
Ryan Vella, Andrea Pozzer, Matthew Forrest, Jos Lelieveld, Thomas Hickler, and Holger Tost
Biogeosciences, 20, 4391–4412, https://doi.org/10.5194/bg-20-4391-2023, https://doi.org/10.5194/bg-20-4391-2023, 2023
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We investigated the effect of the El Niño–Southern Oscillation (ENSO) on biogenic volatile organic compound (BVOC) emissions from plants. ENSO events can cause a significant increase in these emissions, which have a long-term impact on the Earth's atmosphere. Persistent ENSO conditions can cause long-term changes in vegetation, resulting in even higher BVOC emissions. We link ENSO-induced emission anomalies with driving atmospheric and vegetational variables.
Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
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The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
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Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
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Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
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We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
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This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
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Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
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Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
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Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
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As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
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For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
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We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
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Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
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Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
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Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
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We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
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A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
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The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
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Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
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This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
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To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
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This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
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This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
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We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Cited articles
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Short summary
We analyzed measurements with the aim of finding relations between the surface atmosphere exchange of NH3 and the CO2 uptake and transpiration by vegetation. We found a high correlation of daytime NH3 emissions with both latent heat flux and photosynthetically active radiation. Very few simultaneous measurements of NH3, CO2 fluxes and meteorological variables exist at sub-diurnal timescales. This study paves the way to finding more robust relations between the NH3 exchange flux and CO2 uptake.
We analyzed measurements with the aim of finding relations between the surface atmosphere...
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