Articles | Volume 11, issue 18
https://doi.org/10.5194/bg-11-5215-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-5215-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
29 Sep 2014
Research article |
| 29 Sep 2014
Genotyping an Emiliania huxleyi (prymnesiophyceae) bloom event in the North Sea reveals evidence of asexual reproduction
S. A. Krueger-Hadfield
Marine Biological Association, Citadel Hill Laboratory, Plymouth, PL1 2PB, UK
College of Charleston, Grice Marine Laboratory, 205 Fort Johnson Road, Charleston, SC 29412, USA
C. Balestreri
Marine Biological Association, Citadel Hill Laboratory, Plymouth, PL1 2PB, UK
Department of Earth Sciences, Oxford University, South Parks Road, Oxford OX1 3AN, UK
J. Schroeder
Marine Biological Association, Citadel Hill Laboratory, Plymouth, PL1 2PB, UK
A. Highfield
Marine Biological Association, Citadel Hill Laboratory, Plymouth, PL1 2PB, UK
P. Helaouët
Sir Alister Hardy Foundation for Ocean Science, Citadel Hill Laboratory, Plymouth, PL1 2PB, UK
J. Allum
School of Biological Sciences, Faculty of Science, University of Plymouth, Plymouth, PL4 8AA, UK
R. Moate
Plymouth Electron Microscope Centre, Faculty of Science, University of Plymouth, Plymouth, PL4 8AA, UK
K. T. Lohbeck
Evolutionary Ecology of Marine Fishes, GEOMAR Helmholtz-Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
Biological Oceanography, GEOMAR Helmholtz-Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
P. I. Miller
Plymouth Marine Laboratory, Prospect Place, The Hoe, Plymouth, PL1 3DH, UK
U. Riebesell
Biological Oceanography, GEOMAR Helmholtz-Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
T. B. H. Reusch
Evolutionary Ecology of Marine Fishes, GEOMAR Helmholtz-Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
R. E. M. Rickaby
Department of Earth Sciences, Oxford University, South Parks Road, Oxford OX1 3AN, UK
J. Young
Department of Earth Sciences, University College London, WC1E 6BT, UK
G. Hallegraeff
School of Plant Science, University of Tasmania, Private Bag 55, Hobart, Tasmania 7001, Australia
C. Brownlee
Marine Biological Association, Citadel Hill Laboratory, Plymouth, PL1 2PB, UK
D. C. Schroeder
Marine Biological Association, Citadel Hill Laboratory, Plymouth, PL1 2PB, UK
Related authors
No articles found.
Ulf Riebesell
Biogeosciences, 22, 2381–2381, https://doi.org/10.5194/bg-22-2381-2025, https://doi.org/10.5194/bg-22-2381-2025, 2025
Librada Ramírez, Leonardo J. Pozzo-Pirotta, Aja Trebec, Víctor Manzanares-Vázquez, José L. Díez, Javier Arístegui, Ulf Riebesell, Stephen D. Archer, and María Segovia
Biogeosciences, 22, 1865–1886, https://doi.org/10.5194/bg-22-1865-2025, https://doi.org/10.5194/bg-22-1865-2025, 2025
Short summary
Short summary
We studied the potential effects of increasing ocean alkalinity on a natural plankton community in subtropical waters of the Atlantic near Gran Canaria, Spain. Alkalinity is the capacity of water to resist acidification, and plankton are usually microscopic plants (phytoplankton) and animals (zooplankton), often less than 2.5 cm in length. This study suggests that increasing ocean alkalinity did not have a significant negative impact on the plankton community studied.
Julieta Schneider, Ulf Riebesell, Charly André Moras, Laura Marín-Samper, Leila Kittu, Joaquín Ortíz-Cortes, and Kai George Schulz
EGUsphere, https://doi.org/10.5194/egusphere-2025-524, https://doi.org/10.5194/egusphere-2025-524, 2025
Short summary
Short summary
Ocean Alkalinity Enhancement (OAE) is an approach to sequester additional atmospheric CO2 in the ocean and may alleviate ocean acidification. A large-scale mesocosm experiment in Norway tested Ca- and Si-based OAE, increasing total alkalinity (TA) by 0–600 µmol kg-1 and measuring CO2 gas exchange. While TA remained stable, we found mineral-type and/or pCO2/pH effects on coccolithophorid calcification, net community production and zooplankton respiration, providing insights for future OAE trials.
Giulia Faucher, Mathias Haunost, Allanah Joy Paul, Anne Ulrike Christiane Tietz, and Ulf Riebesell
Biogeosciences, 22, 405–415, https://doi.org/10.5194/bg-22-405-2025, https://doi.org/10.5194/bg-22-405-2025, 2025
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is being evaluated for its capacity to absorb atmospheric CO2 in the ocean and store it long term to mitigate climate change. As researchers plan for field tests to gain insights into OAE, sharing knowledge on its environmental impact on marine ecosystems is urgent. Our study examined NaOH-induced OAE in Emiliania huxleyi, a key coccolithophore species, and found that the added total alkalinity (ΔTA) should stay below 600 µmol kg⁻¹ to avoid negative impacts.
Philipp Suessle, Jan Taucher, Silvan Urs Goldenberg, Moritz Baumann, Kristian Spilling, Andrea Noche-Ferreira, Mari Vanharanta, and Ulf Riebesell
Biogeosciences, 22, 71–86, https://doi.org/10.5194/bg-22-71-2025, https://doi.org/10.5194/bg-22-71-2025, 2025
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is a negative emission technology which may alter marine communities and the particle export they drive. Here, impacts of carbonate-based OAE on the flux and attenuation of sinking particles in an oligotrophic plankton community are presented. Whilst biological parameters remained unaffected, abiotic carbonate precipitation occurred. Among counteracting OAE’s efficiency, it influenced mineral ballasting and particle sinking velocities, requiring monitoring.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, and Ulf Riebesell
Biogeosciences, 21, 5707–5724, https://doi.org/10.5194/bg-21-5707-2024, https://doi.org/10.5194/bg-21-5707-2024, 2024
Short summary
Short summary
This study exposed a natural community to two non-CO2-equilibrated ocean alkalinity enhancement (OAE) deployments using different minerals. Adding alkalinity in this manner decreases dissolved CO2, essential for photosynthesis. While photosynthesis was not suppressed, bloom formation was mildly delayed, potentially impacting marine food webs. The study emphasizes the need for further research on OAE without prior equilibration and on its ecological implications.
Niels Suitner, Giulia Faucher, Carl Lim, Julieta Schneider, Charly A. Moras, Ulf Riebesell, and Jens Hartmann
Biogeosciences, 21, 4587–4604, https://doi.org/10.5194/bg-21-4587-2024, https://doi.org/10.5194/bg-21-4587-2024, 2024
Short summary
Short summary
Recent studies described the precipitation of carbonates as a result of alkalinity enhancement in seawater, which could adversely affect the carbon sequestration potential of ocean alkalinity enhancement (OAE) approaches. By conducting experiments in natural seawater, this study observed uniform patterns during the triggered runaway carbonate precipitation, which allow the prediction of safe and efficient local application levels of OAE scenarios.
Silvan Urs Goldenberg, Ulf Riebesell, Daniel Brüggemann, Gregor Börner, Michael Sswat, Arild Folkvord, Maria Couret, Synne Spjelkavik, Nicolás Sánchez, Cornelia Jaspers, and Marta Moyano
Biogeosciences, 21, 4521–4532, https://doi.org/10.5194/bg-21-4521-2024, https://doi.org/10.5194/bg-21-4521-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is being evaluated as a carbon dioxide removal technology for climate change mitigation. With an experiment on species communities, we show that larval and juvenile fish can be resilient to the resulting perturbation of seawater. Fish may hence recruit successfully and continue to support fisheries' production in regions of OAE. Our findings help to establish an environmentally safe operating space for this ocean-based solution.
Sebastian I. Cantarero, Edgart Flores, Harry Allbrook, Paulina Aguayo, Cristian A. Vargas, John E. Tamanaha, J. Bentley C. Scholz, Lennart T. Bach, Carolin R. Löscher, Ulf Riebesell, Balaji Rajagopalan, Nadia Dildar, and Julio Sepúlveda
Biogeosciences, 21, 3927–3958, https://doi.org/10.5194/bg-21-3927-2024, https://doi.org/10.5194/bg-21-3927-2024, 2024
Short summary
Short summary
Our study explores lipid remodeling in response to environmental stress, specifically how cell membrane chemistry changes. We focus on intact polar lipids in a phytoplankton community exposed to diverse stressors in a mesocosm experiment. The observed remodeling indicates acyl chain recycling for energy storage in intact polar lipids during stress, reallocating resources based on varying growth conditions. This understanding is essential to grasp the system's impact on cellular pools.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, Joaquín Ortiz, Stephen D. Archer, Andrea Ludwig, and Ulf Riebesell
Biogeosciences, 21, 2859–2876, https://doi.org/10.5194/bg-21-2859-2024, https://doi.org/10.5194/bg-21-2859-2024, 2024
Short summary
Short summary
Our planet is facing a climate crisis. Scientists are working on innovative solutions that will aid in capturing the hard to abate emissions before it is too late. Exciting research reveals that ocean alkalinity enhancement, a key climate change mitigation strategy, does not harm phytoplankton, the cornerstone of marine ecosystems. Through meticulous study, we may have uncovered a positive relationship: up to a specific limit, enhancing ocean alkalinity boosts photosynthesis by certain species.
Aaron Ferderer, Kai G. Schulz, Ulf Riebesell, Kirralee G. Baker, Zanna Chase, and Lennart T. Bach
Biogeosciences, 21, 2777–2794, https://doi.org/10.5194/bg-21-2777-2024, https://doi.org/10.5194/bg-21-2777-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is a promising method of atmospheric carbon removal; however, its ecological impacts remain largely unknown. We assessed the effects of simulated silicate- and calcium-based mineral OAE on diatom silicification. We found that increased silicate concentrations from silicate-based OAE increased diatom silicification. In contrast, the enhancement of alkalinity had no effect on community silicification and minimal effects on the silicification of different genera.
David González-Santana, María Segovia, Melchor González-Dávila, Librada Ramírez, Aridane G. González, Leonardo J. Pozzo-Pirotta, Veronica Arnone, Victor Vázquez, Ulf Riebesell, and J. Magdalena Santana-Casiano
Biogeosciences, 21, 2705–2715, https://doi.org/10.5194/bg-21-2705-2024, https://doi.org/10.5194/bg-21-2705-2024, 2024
Short summary
Short summary
In a recent experiment off the coast of Gran Canaria (Spain), scientists explored a method called ocean alkalinization enhancement (OAE), where carbonate minerals were added to seawater. This process changed the levels of certain ions in the water, affecting its pH and buffering capacity. The researchers were particularly interested in how this could impact the levels of essential trace metals in the water.
Joost de Vries, Fanny Monteiro, Gerald Langer, Colin Brownlee, and Glen Wheeler
Biogeosciences, 21, 1707–1727, https://doi.org/10.5194/bg-21-1707-2024, https://doi.org/10.5194/bg-21-1707-2024, 2024
Short summary
Short summary
Calcifying phytoplankton (coccolithophores) utilize a life cycle in which they can grow and divide into two different phases. These two phases (HET and HOL) vary in terms of their physiology and distributions, with many unknowns about what the key differences are. Using a combination of lab experiments and model simulations, we find that nutrient storage is a critical difference between the two phases and that this difference allows them to inhabit different nitrogen input regimes.
Allanah Joy Paul, Mathias Haunost, Silvan Urs Goldenberg, Jens Hartmann, Nicolás Sánchez, Julieta Schneider, Niels Suitner, and Ulf Riebesell
EGUsphere, https://doi.org/10.5194/egusphere-2024-417, https://doi.org/10.5194/egusphere-2024-417, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is being assessed for its potential to absorb atmospheric CO2 and store it for a long time. OAE still needs comprehensive assessment of its safety and effectiveness. We studied an idealised OAE application in a natural low nutrient ecosystem over one month. Our results showed that biogeochemical functioning remained mostly stable, but that the long-term capability for storing carbon may be limited at high alkalinity concentration.
Xiaoke Xin, Giulia Faucher, and Ulf Riebesell
Biogeosciences, 21, 761–772, https://doi.org/10.5194/bg-21-761-2024, https://doi.org/10.5194/bg-21-761-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is a promising approach to remove CO2 by accelerating natural rock weathering. However, some of the alkaline substances contain trace metals which could be toxic to marine life. By exposing three representative phytoplankton species to Ni released from alkaline materials, we observed varying responses of phytoplankton to nickel concentrations, suggesting caution should be taken and toxic thresholds should be avoided in OAE with Ni-rich materials.
Adam V. Subhas, Nadine Lehmann, and Rosalind E. M. Rickaby
State Planet, 2-oae2023, 8, https://doi.org/10.5194/sp-2-oae2023-8-2023, https://doi.org/10.5194/sp-2-oae2023-8-2023, 2023
Short summary
Short summary
In addition to emissions reductions, methods of actively removing carbon dioxide from the atmosphere must be considered. One of these methods, called ocean alkalinity enhancement, is currently being studied to evaluate its effectiveness and safety. This article details best practices for the study of natural systems to support the development of ocean alkalinity enhancement as a carbon dioxide removal strategy. Relevant Earth system processes are discussed, along with methods to study them.
Maria D. Iglesias-Rodríguez, Rosalind E. M. Rickaby, Arvind Singh, and James A. Gately
State Planet, 2-oae2023, 5, https://doi.org/10.5194/sp-2-oae2023-5-2023, https://doi.org/10.5194/sp-2-oae2023-5-2023, 2023
Short summary
Short summary
Recent concern about the repercussions of rising atmospheric CO2 as a key heat-trapping agent have prompted ocean experts to discuss ocean alkalinity enhancement (OAE) as a CO2 removal approach but also as a potential way to mitigate ocean acidification. This chapter provides an overview of best practice in OAE laboratory experimentation by identifying key criteria to achieve high-quality results and providing recommendations to contrast results with other laboratories.
Ulf Riebesell, Daniela Basso, Sonja Geilert, Andrew W. Dale, and Matthias Kreuzburg
State Planet, 2-oae2023, 6, https://doi.org/10.5194/sp-2-oae2023-6-2023, https://doi.org/10.5194/sp-2-oae2023-6-2023, 2023
Short summary
Short summary
Mesocosm experiments represent a highly valuable tool in determining the safe operating space of ocean alkalinity enhancement (OAE) applications. By combining realism and biological complexity with controllability and replication, they provide an ideal OAE test bed and a critical stepping stone towards field applications. Mesocosm approaches can also be helpful in testing the efficacy, efficiency and permanence of OAE applications.
Andreas Oschlies, Lennart T. Bach, Rosalind E. M. Rickaby, Terre Satterfield, Romany Webb, and Jean-Pierre Gattuso
State Planet, 2-oae2023, 1, https://doi.org/10.5194/sp-2-oae2023-1-2023, https://doi.org/10.5194/sp-2-oae2023-1-2023, 2023
Short summary
Short summary
Reaching promised climate targets will require the deployment of carbon dioxide removal (CDR). Marine CDR options receive more and more interest. Based on idealized theoretical studies, ocean alkalinity enhancement (OAE) appears as a promising marine CDR method. We provide an overview on the current situation of developing OAE as a marine CDR method and describe the history that has led to the creation of the OAE research best practice guide.
Paul N. Pearson, Jeremy Young, David J. King, and Bridget S. Wade
J. Micropalaeontol., 42, 211–255, https://doi.org/10.5194/jm-42-211-2023, https://doi.org/10.5194/jm-42-211-2023, 2023
Short summary
Short summary
Planktonic foraminifera are marine plankton that have a long and continuous fossil record. They are used for correlating and dating ocean sediments and studying evolution and past climates. This paper presents new information about Pulleniatina, one of the most widespread and abundant groups, from an important site in the Pacific Ocean. It also brings together a very large amount of information on the fossil record from other sites globally.
Richard Renshaw, Eileen Bresnan, Susan Kay, Robert McEwan, Peter I. Miller, and Paul Tett
State Planet, 1-osr7, 13, https://doi.org/10.5194/sp-1-osr7-13-2023, https://doi.org/10.5194/sp-1-osr7-13-2023, 2023
Short summary
Short summary
There were two unusual blooms in Scottish waters in summer 2021. Both turned the sea a turquoise colour visible from space, typical of coccolithophore blooms. We use reanalysis and satellite data to examine the environment that led to these blooms. We suggest unusual weather was a contributory factor in both cases.
Moritz Baumann, Allanah Joy Paul, Jan Taucher, Lennart Thomas Bach, Silvan Goldenberg, Paul Stange, Fabrizio Minutolo, and Ulf Riebesell
Biogeosciences, 20, 2595–2612, https://doi.org/10.5194/bg-20-2595-2023, https://doi.org/10.5194/bg-20-2595-2023, 2023
Short summary
Short summary
The sinking velocity of marine particles affects how much atmospheric CO2 is stored inside our oceans. We measured particle sinking velocities in the Peruvian upwelling system and assessed their physical and biochemical drivers. We found that sinking velocity was mainly influenced by particle size and porosity, while ballasting minerals played only a minor role. Our findings help us to better understand the particle sinking dynamics in this highly productive marine system.
Kristian Spilling, Jonna Piiparinen, Eric P. Achterberg, Javier Arístegui, Lennart T. Bach, Maria T. Camarena-Gómez, Elisabeth von der Esch, Martin A. Fischer, Markel Gómez-Letona, Nauzet Hernández-Hernández, Judith Meyer, Ruth A. Schmitz, and Ulf Riebesell
Biogeosciences, 20, 1605–1619, https://doi.org/10.5194/bg-20-1605-2023, https://doi.org/10.5194/bg-20-1605-2023, 2023
Short summary
Short summary
We carried out an enclosure experiment using surface water off Peru with different additions of oxygen minimum zone water. In this paper, we report on enzyme activity and provide data on the decomposition of organic matter. We found very high activity with respect to an enzyme breaking down protein, suggesting that this is important for nutrient recycling both at present and in the future ocean.
Markus A. Min, David M. Needham, Sebastian Sudek, Nathan Kobun Truelove, Kathleen J. Pitz, Gabriela M. Chavez, Camille Poirier, Bente Gardeler, Elisabeth von der Esch, Andrea Ludwig, Ulf Riebesell, Alexandra Z. Worden, and Francisco P. Chavez
Biogeosciences, 20, 1277–1298, https://doi.org/10.5194/bg-20-1277-2023, https://doi.org/10.5194/bg-20-1277-2023, 2023
Short summary
Short summary
Emerging molecular methods provide new ways of understanding how marine communities respond to changes in ocean conditions. Here, environmental DNA was used to track the temporal evolution of biological communities in the Peruvian coastal upwelling system and in an adjacent enclosure where upwelling was simulated. We found that the two communities quickly diverged, with the open ocean being one found during upwelling and the enclosure evolving to one found under stratified conditions.
Jens Hartmann, Niels Suitner, Carl Lim, Julieta Schneider, Laura Marín-Samper, Javier Arístegui, Phil Renforth, Jan Taucher, and Ulf Riebesell
Biogeosciences, 20, 781–802, https://doi.org/10.5194/bg-20-781-2023, https://doi.org/10.5194/bg-20-781-2023, 2023
Short summary
Short summary
CO2 can be stored in the ocean via increasing alkalinity of ocean water. Alkalinity can be created via dissolution of alkaline materials, like limestone or soda. Presented research studies boundaries for increasing alkalinity in seawater. The best way to increase alkalinity was found using an equilibrated solution, for example as produced from reactors. Adding particles for dissolution into seawater on the other hand produces the risk of losing alkalinity and degassing of CO2 to the atmosphere.
Allanah Joy Paul, Lennart Thomas Bach, Javier Arístegui, Elisabeth von der Esch, Nauzet Hernández-Hernández, Jonna Piiparinen, Laura Ramajo, Kristian Spilling, and Ulf Riebesell
Biogeosciences, 19, 5911–5926, https://doi.org/10.5194/bg-19-5911-2022, https://doi.org/10.5194/bg-19-5911-2022, 2022
Short summary
Short summary
We investigated how different deep water chemistry and biology modulate the response of surface phytoplankton communities to upwelling in the Peruvian coastal zone. Our results show that the most influential drivers were the ratio of inorganic nutrients (N : P) and the microbial community present in upwelling source water. These led to unexpected and variable development in the phytoplankton assemblage that could not be predicted by the amount of inorganic nutrients alone.
Shao-Min Chen, Ulf Riebesell, Kai G. Schulz, Elisabeth von der Esch, Eric P. Achterberg, and Lennart T. Bach
Biogeosciences, 19, 295–312, https://doi.org/10.5194/bg-19-295-2022, https://doi.org/10.5194/bg-19-295-2022, 2022
Short summary
Short summary
Oxygen minimum zones in the ocean are characterized by enhanced carbon dioxide (CO2) levels and are being further acidified by increasing anthropogenic atmospheric CO2. Here we report CO2 system measurements in a mesocosm study offshore Peru during a rare coastal El Niño event to investigate how CO2 dynamics may respond to ongoing ocean deoxygenation. Our observations show that nitrogen limitation, productivity, and plankton community shift play an important role in driving the CO2 dynamics.
Sabine Keuter, Jeremy R. Young, Gil Koplovitz, Adriana Zingone, and Miguel J. Frada
J. Micropalaeontol., 40, 75–99, https://doi.org/10.5194/jm-40-75-2021, https://doi.org/10.5194/jm-40-75-2021, 2021
Short summary
Short summary
Coccolithophores are an important group of phytoplankton that produce intricate skeletons of calcium carbonate. They contribute to the base of the marine food web and are important drivers of the global carbon cycle. Here, we describe novel coccolithophores and novel life cycle combinations detected by electron microscopy in samples collected in the Red Sea and the western Mediterranean. Our study advances our understanding of coccolithophore diversity and life cycle complexity.
Kai G. Schulz, Eric P. Achterberg, Javier Arístegui, Lennart T. Bach, Isabel Baños, Tim Boxhammer, Dirk Erler, Maricarmen Igarza, Verena Kalter, Andrea Ludwig, Carolin Löscher, Jana Meyer, Judith Meyer, Fabrizio Minutolo, Elisabeth von der Esch, Bess B. Ward, and Ulf Riebesell
Biogeosciences, 18, 4305–4320, https://doi.org/10.5194/bg-18-4305-2021, https://doi.org/10.5194/bg-18-4305-2021, 2021
Short summary
Short summary
Upwelling of nutrient-rich deep waters to the surface make eastern boundary upwelling systems hot spots of marine productivity. This leads to subsurface oxygen depletion and the transformation of bioavailable nitrogen into inert N2. Here we quantify nitrogen loss processes following a simulated deep water upwelling. Denitrification was the dominant process, and budget calculations suggest that a significant portion of nitrogen that could be exported to depth is already lost in the surface ocean.
Joost de Vries, Fanny Monteiro, Glen Wheeler, Alex Poulton, Jelena Godrijan, Federica Cerino, Elisa Malinverno, Gerald Langer, and Colin Brownlee
Biogeosciences, 18, 1161–1184, https://doi.org/10.5194/bg-18-1161-2021, https://doi.org/10.5194/bg-18-1161-2021, 2021
Short summary
Short summary
Coccolithophores are important calcifying phytoplankton with an overlooked life cycle. We compile a global dataset of marine coccolithophore abundance to investigate the environmental characteristics of each life cycle phase. We find that both phases contribute to coccolithophore abundance and that their different environmental preference increases coccolithophore habitat. Accounting for the life cycle of coccolithophores is thus crucial for understanding their ecology and biogeochemical impact.
Lennart Thomas Bach, Allanah Joy Paul, Tim Boxhammer, Elisabeth von der Esch, Michelle Graco, Kai Georg Schulz, Eric Achterberg, Paulina Aguayo, Javier Arístegui, Patrizia Ayón, Isabel Baños, Avy Bernales, Anne Sophie Boegeholz, Francisco Chavez, Gabriela Chavez, Shao-Min Chen, Kristin Doering, Alba Filella, Martin Fischer, Patricia Grasse, Mathias Haunost, Jan Hennke, Nauzet Hernández-Hernández, Mark Hopwood, Maricarmen Igarza, Verena Kalter, Leila Kittu, Peter Kohnert, Jesus Ledesma, Christian Lieberum, Silke Lischka, Carolin Löscher, Andrea Ludwig, Ursula Mendoza, Jana Meyer, Judith Meyer, Fabrizio Minutolo, Joaquin Ortiz Cortes, Jonna Piiparinen, Claudia Sforna, Kristian Spilling, Sonia Sanchez, Carsten Spisla, Michael Sswat, Mabel Zavala Moreira, and Ulf Riebesell
Biogeosciences, 17, 4831–4852, https://doi.org/10.5194/bg-17-4831-2020, https://doi.org/10.5194/bg-17-4831-2020, 2020
Short summary
Short summary
The eastern boundary upwelling system off Peru is among Earth's most productive ocean ecosystems, but the factors that control its functioning are poorly constrained. Here we used mesocosms, moored ~ 6 km offshore Peru, to investigate how processes in plankton communities drive key biogeochemical processes. We show that nutrient and light co-limitation keep productivity and export at a remarkably constant level while stoichiometry changes strongly with shifts in plankton community structure.
Giulia Faucher, Ulf Riebesell, and Lennart Thomas Bach
Clim. Past, 16, 1007–1025, https://doi.org/10.5194/cp-16-1007-2020, https://doi.org/10.5194/cp-16-1007-2020, 2020
Short summary
Short summary
We designed five experiments choosing different coccolithophore species that have been evolutionarily distinct for millions of years. If all species showed the same morphological response to an environmental driver, this could be indicative of a response pattern that is conserved over geological timescales. We found an increase in the percentage of malformed coccoliths under altered CO2, providing evidence that this response could be used as paleo-proxy for episodes of acute CO2 perturbations.
Yong Zhang, Lennart T. Bach, Kai T. Lohbeck, Kai G. Schulz, Luisa Listmann, Regina Klapper, and Ulf Riebesell
Biogeosciences, 15, 3691–3701, https://doi.org/10.5194/bg-15-3691-2018, https://doi.org/10.5194/bg-15-3691-2018, 2018
Short summary
Short summary
To compare variations in physiological responses to pCO2 between populations, we measured growth, POC and PIC production rates at a pCO2 range from 120 to 2630 µatm for 17 strains of the coccolithophore Emiliania huxleyi from the Azores, Canary Islands, and Norwegian coast near Bergen. Optimal pCO2 for growth and POC production rates and tolerance to low pH was significantly higher for the Bergen population than the Azores and Canary Islands populations.
Sudeep Kanungo, Paul R. Bown, Jeremy R. Young, and Andrew S. Gale
J. Micropalaeontol., 37, 231–247, https://doi.org/10.5194/jm-37-231-2018, https://doi.org/10.5194/jm-37-231-2018, 2018
Short summary
Short summary
This paper documents a regional warming event in the Albian of the Anglo-Paris Basin and its palaeoclimatic and palaeoceanographic implications. This multi-proxy study utilizes three independent datasets to confirm the warming event that lasted ~ 500 kyr around the middle–upper Albian boundary. The research involved a field study of the Gault Clay (UK) with an in-depth analysis of nannofossils, bulk sediment carbon and oxygen isotopes, and an investigation of ammonites from the formation.
Katharine J. Crawfurd, Santiago Alvarez-Fernandez, Kristina D. A. Mojica, Ulf Riebesell, and Corina P. D. Brussaard
Biogeosciences, 14, 3831–3849, https://doi.org/10.5194/bg-14-3831-2017, https://doi.org/10.5194/bg-14-3831-2017, 2017
Short summary
Short summary
Carbon dioxide (CO2) is increasing in the atmosphere and oceans. To simulate future conditions we manipulated CO2 concentrations of natural Baltic seawater in 55 m3 bags in situ. We saw increased growth rates and abundances of the smallest-sized eukaryotic phytoplankton and reduced abundances of other phytoplankton with increased CO2. Viral and bacterial abundances were also affected. This would lead to more carbon recycling in the surface water and affect marine food webs and the carbon cycle.
Giulia Faucher, Linn Hoffmann, Lennart T. Bach, Cinzia Bottini, Elisabetta Erba, and Ulf Riebesell
Biogeosciences, 14, 3603–3613, https://doi.org/10.5194/bg-14-3603-2017, https://doi.org/10.5194/bg-14-3603-2017, 2017
Short summary
Short summary
The main goal of this study was to understand if, similarly to the fossil record, high quantities of toxic metals induce coccolith dwarfism in coccolithophore species. We investigated, for the first time, the effects of trace metals on coccolithophore species other than E. huxleyi and on coccolith morphology and size. Our data show a species-specific sensitivity to trace metal concentration, allowing the recognition of the most-, intermediate- and least-tolerant taxa to trace metal enrichments.
Silke Lischka, Lennart T. Bach, Kai-Georg Schulz, and Ulf Riebesell
Biogeosciences, 14, 447–466, https://doi.org/10.5194/bg-14-447-2017, https://doi.org/10.5194/bg-14-447-2017, 2017
Short summary
Short summary
We conducted a large-scale field experiment using 55 m3 floating containers (mesocosms) to investigate consequences of near-future projected CO2 elevations (ocean acidification) on a Baltic Sea plankton community in Storfjärden (Finland). The focus of our study was on single- and multicelled small-sized organisms dwelling in the water column. Our results suggest that increasing CO2 concentrations may change the species composition and promote specific food web interactions.
Enis Hrustić, Risto Lignell, Ulf Riebesell, and Tron Frede Thingstad
Biogeosciences, 14, 379–387, https://doi.org/10.5194/bg-14-379-2017, https://doi.org/10.5194/bg-14-379-2017, 2017
Short summary
Short summary
Phytoplankton in the ocean's stratified layer are limited by mineral nutrients, normally nitrogen, phosphorus, or iron. It is important to know not only which element is limiting, but also the surplus of the secondary limiting element. We explore here, in temperate mesotrophic waters, a bioassay based on alkaline phosphatase that provides information on both of these.
Thomas Hornick, Lennart T. Bach, Katharine J. Crawfurd, Kristian Spilling, Eric P. Achterberg, Jason N. Woodhouse, Kai G. Schulz, Corina P. D. Brussaard, Ulf Riebesell, and Hans-Peter Grossart
Biogeosciences, 14, 1–15, https://doi.org/10.5194/bg-14-1-2017, https://doi.org/10.5194/bg-14-1-2017, 2017
Rafael Bermúdez, Monika Winder, Annegret Stuhr, Anna-Karin Almén, Jonna Engström-Öst, and Ulf Riebesell
Biogeosciences, 13, 6625–6635, https://doi.org/10.5194/bg-13-6625-2016, https://doi.org/10.5194/bg-13-6625-2016, 2016
Short summary
Short summary
Increasing CO2 is changing seawater chemistry towards a lower pH, which affects marine organisms. We investigate the response of a brackish plankton community to a CO2 gradient in terms of structure and fatty acid composition. The structure was resilient to CO2 and did not diverge between treatments. FA was influenced by community structure, which was driven by silicate and phosphate. This suggests that CO2 effects are dampened in communities already experiencing high natural pCO2 fluctuation.
Anu Vehmaa, Anna-Karin Almén, Andreas Brutemark, Allanah Paul, Ulf Riebesell, Sara Furuhagen, and Jonna Engström-Öst
Biogeosciences, 13, 6171–6182, https://doi.org/10.5194/bg-13-6171-2016, https://doi.org/10.5194/bg-13-6171-2016, 2016
Short summary
Short summary
Ocean acidification is challenging phenotypic plasticity of individuals and populations. We studied phenotypic plasticity of the calanoid copepod Acartia bifilosa in the course of a pelagic, large-volume mesocosm study in the Baltic Sea. We found significant negative effects of ocean acidification on adult female copepod size and egg hatching success. Overall, these results indicate that A. bifilosa could be affected by projected near-future CO2 levels.
Kristian Spilling, Kai G. Schulz, Allanah J. Paul, Tim Boxhammer, Eric P. Achterberg, Thomas Hornick, Silke Lischka, Annegret Stuhr, Rafael Bermúdez, Jan Czerny, Kate Crawfurd, Corina P. D. Brussaard, Hans-Peter Grossart, and Ulf Riebesell
Biogeosciences, 13, 6081–6093, https://doi.org/10.5194/bg-13-6081-2016, https://doi.org/10.5194/bg-13-6081-2016, 2016
Short summary
Short summary
We performed an experiment in the Baltic Sea in order to investigate the consequences of the increasing CO2 levels on biological processes in the free water mass. There was more accumulation of organic carbon at high CO2 levels. Surprisingly, this was caused by reduced loss processes (respiration and bacterial production) in a high-CO2 environment, and not by increased photosynthetic fixation of CO2. Our carbon budget can be used to better disentangle the effects of ocean acidification.
Kristian Spilling, Allanah J. Paul, Niklas Virkkala, Tom Hastings, Silke Lischka, Annegret Stuhr, Rafael Bermúdez, Jan Czerny, Tim Boxhammer, Kai G. Schulz, Andrea Ludwig, and Ulf Riebesell
Biogeosciences, 13, 4707–4719, https://doi.org/10.5194/bg-13-4707-2016, https://doi.org/10.5194/bg-13-4707-2016, 2016
Short summary
Short summary
Anthropogenic carbon dioxide (CO2) emissions are reducing the pH in the world's oceans. We determined the plankton community composition and measured primary production, respiration rates and carbon export during an ocean acidification experiment. Our results suggest that increased CO2 reduced respiration and increased net carbon fixation at high CO2. This did not, however, translate into higher carbon export, and consequently did not work as a negative feedback mechanism for decreasing pH.
Juntian Xu, Lennart T. Bach, Kai G. Schulz, Wenyan Zhao, Kunshan Gao, and Ulf Riebesell
Biogeosciences, 13, 4637–4643, https://doi.org/10.5194/bg-13-4637-2016, https://doi.org/10.5194/bg-13-4637-2016, 2016
Alison L. Webb, Emma Leedham-Elvidge, Claire Hughes, Frances E. Hopkins, Gill Malin, Lennart T. Bach, Kai Schulz, Kate Crawfurd, Corina P. D. Brussaard, Annegret Stuhr, Ulf Riebesell, and Peter S. Liss
Biogeosciences, 13, 4595–4613, https://doi.org/10.5194/bg-13-4595-2016, https://doi.org/10.5194/bg-13-4595-2016, 2016
Short summary
Short summary
This paper presents concentrations of several trace gases produced by the Baltic Sea phytoplankton community during a mesocosm experiment with five different CO2 levels. Average concentrations of dimethylsulphide were lower in the highest CO2 mesocosms over a 6-week period, corresponding to previous mesocosm experiment results. No dimethylsulfoniopropionate was detected due to a methodological issue. Concentrations of iodine- and bromine-containing halocarbons were unaffected by increasing CO2.
Allanah J. Paul, Eric P. Achterberg, Lennart T. Bach, Tim Boxhammer, Jan Czerny, Mathias Haunost, Kai-Georg Schulz, Annegret Stuhr, and Ulf Riebesell
Biogeosciences, 13, 3901–3913, https://doi.org/10.5194/bg-13-3901-2016, https://doi.org/10.5194/bg-13-3901-2016, 2016
Carolin R. Löscher, Hermann W. Bange, Ruth A. Schmitz, Cameron M. Callbeck, Anja Engel, Helena Hauss, Torsten Kanzow, Rainer Kiko, Gaute Lavik, Alexandra Loginova, Frank Melzner, Judith Meyer, Sven C. Neulinger, Markus Pahlow, Ulf Riebesell, Harald Schunck, Sören Thomsen, and Hannes Wagner
Biogeosciences, 13, 3585–3606, https://doi.org/10.5194/bg-13-3585-2016, https://doi.org/10.5194/bg-13-3585-2016, 2016
Short summary
Short summary
The ocean loses oxygen due to climate change. Addressing this issue in tropical ocean regions (off Peru and Mauritania), we aimed to understand the effects of oxygen depletion on various aspects of marine biogeochemistry, including primary production and export production, the nitrogen cycle, greenhouse gas production, organic matter fluxes and remineralization, and the role of zooplankton and viruses.
Monika Nausch, Lennart Thomas Bach, Jan Czerny, Josephine Goldstein, Hans-Peter Grossart, Dana Hellemann, Thomas Hornick, Eric Pieter Achterberg, Kai-Georg Schulz, and Ulf Riebesell
Biogeosciences, 13, 3035–3050, https://doi.org/10.5194/bg-13-3035-2016, https://doi.org/10.5194/bg-13-3035-2016, 2016
Short summary
Short summary
Studies investigating the effect of increasing CO2 levels on the phosphorus cycle in natural waters are lacking although phosphorus often controls phytoplankton development in aquatic systems. The aim of our study was to analyse effects of elevated CO2 levels on phosphorus pool sizes and uptake. Therefore, we conducted a CO2-manipulation mesocosm experiment in the Storfjärden (western Gulf of Finland, Baltic Sea) in summer 2012. We compared the phosphorus dynamics in different mesocosm treatment
Tim Boxhammer, Lennart T. Bach, Jan Czerny, and Ulf Riebesell
Biogeosciences, 13, 2849–2858, https://doi.org/10.5194/bg-13-2849-2016, https://doi.org/10.5194/bg-13-2849-2016, 2016
Anna-Karin Almén, Anu Vehmaa, Andreas Brutemark, Lennart Bach, Silke Lischka, Annegret Stuhr, Sara Furuhagen, Allanah Paul, J. Rafael Bermúdez, Ulf Riebesell, and Jonna Engström-Öst
Biogeosciences, 13, 1037–1048, https://doi.org/10.5194/bg-13-1037-2016, https://doi.org/10.5194/bg-13-1037-2016, 2016
Short summary
Short summary
We studied the effects of ocean acidification (OA) on the aquatic crustacean Eurytemora affinis and measured offspring production in relation to pH, chlorophyll, algae, fatty acids, and oxidative stress. No effects on offspring production or pH effects via food were found. E. affinis seems robust against OA on a physiological level and did probably not face acute pH stress in the treatments, as the species naturally face large pH fluctuations.
J. Meyer, C. R. Löscher, S. C. Neulinger, A. F. Reichel, A. Loginova, C. Borchard, R. A. Schmitz, H. Hauss, R. Kiko, and U. Riebesell
Biogeosciences, 13, 781–794, https://doi.org/10.5194/bg-13-781-2016, https://doi.org/10.5194/bg-13-781-2016, 2016
M. Hermoso, I. Z. X. Chan, H. L. O. McClelland, A. M. C. Heureux, and R. E. M. Rickaby
Biogeosciences, 13, 301–312, https://doi.org/10.5194/bg-13-301-2016, https://doi.org/10.5194/bg-13-301-2016, 2016
M. N. Müller, J. Barcelos e Ramos, K. G. Schulz, U. Riebesell, J. Kaźmierczak, F. Gallo, L. Mackinder, Y. Li, P. N. Nesterenko, T. W. Trull, and G. M. Hallegraeff
Biogeosciences, 12, 6493–6501, https://doi.org/10.5194/bg-12-6493-2015, https://doi.org/10.5194/bg-12-6493-2015, 2015
Short summary
Short summary
The White Cliffs of Dover date back to the Cretaceous and are made up of microscopic chalky shells which were produced mainly by marine phytoplankton (coccolithophores). This is iconic proof for their success at times of relatively high seawater calcium concentrations and, as shown here, to be linked to their ability to precipitate calcium as chalk. The invention of calcification can thus be considered an evolutionary milestone allowing coccolithophores to thrive at times when others struggled.
A. Singh, S. E. Baer, U. Riebesell, A. C. Martiny, and M. W. Lomas
Biogeosciences, 12, 6389–6403, https://doi.org/10.5194/bg-12-6389-2015, https://doi.org/10.5194/bg-12-6389-2015, 2015
Short summary
Short summary
Stoichiometry of macronutrients in the subtropical ocean is important to understand how biogeochemical cycles are coupled. We observed that elemental stoichiometry was much higher in the dissolved organic-matter pools than in the particulate organic matter pools. In addition ratios vary with depth due to changes in growth rates of specific phytoplankton groups, namely cyanobacteria. These data will improve biogeochemical models by placing observational constraints on these ratios.
A. J. Paul, L. T. Bach, K.-G. Schulz, T. Boxhammer, J. Czerny, E. P. Achterberg, D. Hellemann, Y. Trense, M. Nausch, M. Sswat, and U. Riebesell
Biogeosciences, 12, 6181–6203, https://doi.org/10.5194/bg-12-6181-2015, https://doi.org/10.5194/bg-12-6181-2015, 2015
J. Meyer and U. Riebesell
Biogeosciences, 12, 1671–1682, https://doi.org/10.5194/bg-12-1671-2015, https://doi.org/10.5194/bg-12-1671-2015, 2015
D. R. Clark, I. J. Brown, A. P. Rees, P. J. Somerfield, and P. I. Miller
Biogeosciences, 11, 4985–5005, https://doi.org/10.5194/bg-11-4985-2014, https://doi.org/10.5194/bg-11-4985-2014, 2014
J. R. Young, A. J. Poulton, and T. Tyrrell
Biogeosciences, 11, 4771–4782, https://doi.org/10.5194/bg-11-4771-2014, https://doi.org/10.5194/bg-11-4771-2014, 2014
A. J. Poulton, M. C. Stinchcombe, E. P. Achterberg, D. C. E. Bakker, C. Dumousseaud, H. E. Lawson, G. A. Lee, S. Richier, D. J. Suggett, and J. R. Young
Biogeosciences, 11, 3919–3940, https://doi.org/10.5194/bg-11-3919-2014, https://doi.org/10.5194/bg-11-3919-2014, 2014
M. N. Müller, M. Lebrato, U. Riebesell, J. Barcelos e Ramos, K. G. Schulz, S. Blanco-Ameijeiras, S. Sett, A. Eisenhauer, and H. M. Stoll
Biogeosciences, 11, 1065–1075, https://doi.org/10.5194/bg-11-1065-2014, https://doi.org/10.5194/bg-11-1065-2014, 2014
A. Silyakova, R. G. J. Bellerby, K. G. Schulz, J. Czerny, T. Tanaka, G. Nondal, U. Riebesell, A. Engel, T. De Lange, and A. Ludvig
Biogeosciences, 10, 4847–4859, https://doi.org/10.5194/bg-10-4847-2013, https://doi.org/10.5194/bg-10-4847-2013, 2013
J. Czerny, K. G. Schulz, T. Boxhammer, R. G. J. Bellerby, J. Büdenbender, A. Engel, S. A. Krug, A. Ludwig, K. Nachtigall, G. Nondal, B. Niehoff, A. Silyakova, and U. Riebesell
Biogeosciences, 10, 3109–3125, https://doi.org/10.5194/bg-10-3109-2013, https://doi.org/10.5194/bg-10-3109-2013, 2013
J. Czerny, K. G. Schulz, S. A. Krug, A. Ludwig, and U. Riebesell
Biogeosciences, 10, 1937–1941, https://doi.org/10.5194/bg-10-1937-2013, https://doi.org/10.5194/bg-10-1937-2013, 2013
U. Riebesell, J. Czerny, K. von Bröckel, T. Boxhammer, J. Büdenbender, M. Deckelnick, M. Fischer, D. Hoffmann, S. A. Krug, U. Lentz, A. Ludwig, R. Muche, and K. G. Schulz
Biogeosciences, 10, 1835–1847, https://doi.org/10.5194/bg-10-1835-2013, https://doi.org/10.5194/bg-10-1835-2013, 2013
N. Aberle, K. G. Schulz, A. Stuhr, A. M. Malzahn, A. Ludwig, and U. Riebesell
Biogeosciences, 10, 1471–1481, https://doi.org/10.5194/bg-10-1471-2013, https://doi.org/10.5194/bg-10-1471-2013, 2013
A. de Kluijver, K. Soetaert, J. Czerny, K. G. Schulz, T. Boxhammer, U. Riebesell, and J. J. Middelburg
Biogeosciences, 10, 1425–1440, https://doi.org/10.5194/bg-10-1425-2013, https://doi.org/10.5194/bg-10-1425-2013, 2013
A. Engel, C. Borchard, J. Piontek, K. G. Schulz, U. Riebesell, and R. Bellerby
Biogeosciences, 10, 1291–1308, https://doi.org/10.5194/bg-10-1291-2013, https://doi.org/10.5194/bg-10-1291-2013, 2013
C. P. D. Brussaard, A. A. M. Noordeloos, H. Witte, M. C. J. Collenteur, K. Schulz, A. Ludwig, and U. Riebesell
Biogeosciences, 10, 719–731, https://doi.org/10.5194/bg-10-719-2013, https://doi.org/10.5194/bg-10-719-2013, 2013
A.-S. Roy, S. M. Gibbons, H. Schunck, S. Owens, J. G. Caporaso, M. Sperling, J. I. Nissimov, S. Romac, L. Bittner, M. Mühling, U. Riebesell, J. LaRoche, and J. A. Gilbert
Biogeosciences, 10, 555–566, https://doi.org/10.5194/bg-10-555-2013, https://doi.org/10.5194/bg-10-555-2013, 2013
T. Tanaka, S. Alliouane, R. G. B. Bellerby, J. Czerny, A. de Kluijver, U. Riebesell, K. G. Schulz, A. Silyakova, and J.-P. Gattuso
Biogeosciences, 10, 315–325, https://doi.org/10.5194/bg-10-315-2013, https://doi.org/10.5194/bg-10-315-2013, 2013
J. Piontek, C. Borchard, M. Sperling, K. G. Schulz, U. Riebesell, and A. Engel
Biogeosciences, 10, 297–314, https://doi.org/10.5194/bg-10-297-2013, https://doi.org/10.5194/bg-10-297-2013, 2013
M. Sperling, J. Piontek, G. Gerdts, A. Wichels, H. Schunck, A.-S. Roy, J. La Roche, J. Gilbert, J. I. Nissimov, L. Bittner, S. Romac, U. Riebesell, and A. Engel
Biogeosciences, 10, 181–191, https://doi.org/10.5194/bg-10-181-2013, https://doi.org/10.5194/bg-10-181-2013, 2013
K. G. Schulz, R. G. J. Bellerby, C. P. D. Brussaard, J. Büdenbender, J. Czerny, A. Engel, M. Fischer, S. Koch-Klavsen, S. A. Krug, S. Lischka, A. Ludwig, M. Meyerhöfer, G. Nondal, A. Silyakova, A. Stuhr, and U. Riebesell
Biogeosciences, 10, 161–180, https://doi.org/10.5194/bg-10-161-2013, https://doi.org/10.5194/bg-10-161-2013, 2013
Related subject area
Biodiversity and Ecosystem Function: Microbial Ecology & Geomicrobiology
Microbial communities inhabiting 600-year-old sediments in the Inka-Coya Lake located in the Atacama Desert
Bacteria as paleoenvironmental proxies: the study of a cave Pleistocene profile
The geothermal gradient shapes microbial diversity and processes in natural-gas-bearing sedimentary aquifers
Microbial methane formation in deep aquifers associated with the sediment burial history at a coastal site
Impact of metabolism and temperature on 2H ∕ 1H fractionation in lipids of the marine bacterium Shewanella piezotolerans WP3
Maximum summer temperatures predict the temperature adaptation of Arctic soil bacterial communities
Potential contributions of nitrifiers and denitrifiers to nitrous oxide sources and sinks in China's estuarine and coastal areas
Aqueous system-level processes and prokaryote assemblages in the ferruginous and sulfate-rich bottom waters of a post-mining lake
Abundances and morphotypes of the coccolithophore Emiliania huxleyi in southern Patagonia compared to neighbouring oceans and Northern Hemisphere fjords
Determining the hierarchical order by which the variables of sampling period, dust outbreak occurrence, and sampling location can shape the airborne bacterial communities in the Mediterranean basin
The water column of the Yamal tundra lakes as a microbial filter preventing methane emission
Bioerosion and fungal colonization of the invasive foraminiferan Amphistegina lobifera in a Mediterranean seagrass meadow
Effects of tidal influence on the structure and function of prokaryotic communities in the sediments of a pristine Brazilian mangrove
Deep maxima of phytoplankton biomass, primary production and bacterial production in the Mediterranean Sea
Haplo-diplontic life cycle expands coccolithophore niche
The composition of endolithic communities in gypcrete is determined by the specific microhabitat architecture
Uncovering chemical signatures of salinity gradients through compositional analysis of protein sequences
Cryptic roles of tetrathionate in the sulfur cycle of marine sediments: microbial drivers and indicators
Lake mixing regime selects apparent methane oxidation kinetics of the methanotroph assemblage
The contribution of microbial communities in polymetallic nodules to the diversity of the deep-sea microbiome of the Peru Basin (4130–4198 m depth)
The pH-based ecological coherence of active canonical methanotrophs in paddy soils
Biogeographical distribution of microbial communities along the Rajang River–South China Sea continuum
Microbial community composition and abundance after millennia of submarine permafrost warming
Cold-water corals and hydrocarbon-rich seepage in Pompeia Province (Gulf of Cádiz) – living on the edge
Ecophysiological characteristics of red, green, and brown strains of the Baltic picocyanobacterium Synechococcus sp. – a laboratory study
Factors controlling the community structure of picoplankton in contrasting marine environments
Community composition and seasonal changes of archaea in coarse and fine air particulate matter
Microbial community structure in the western tropical South Pacific
Ecophysiological characterization of early successional biological soil crusts in heavily human-impacted areas
Soil microbial biomass, activity and community composition along altitudinal gradients in the High Arctic (Billefjorden, Svalbard)
Plant n-alkane production from litterfall altered the diversity and community structure of alkane degrading bacteria in litter layer in lowland subtropical rainforest in Taiwan
Revisiting chlorophyll extraction methods in biological soil crusts – methodology for determination of chlorophyll a and chlorophyll a + b as compared to previous methods
Divergence of dominant factors in soil microbial communities and functions in forest ecosystems along a climatic gradient
Uncovering biological soil crusts: carbon content and structure of intact Arctic, Antarctic and alpine biological soil crusts
Antagonistic effects of drought and sand burial enable the survival of the biocrust moss Bryum argenteum in an arid sandy desert
Microbial methanogenesis in the sulfate-reducing zone of sediments in the Eckernförde Bay, SW Baltic Sea
Ferrihydrite-associated organic matter (OM) stimulates reduction by Shewanella oneidensis MR-1 and a complex microbial consortia
Effects of temperature on the composition and diversity of bacterial communities in bamboo soils at different elevations
Development of bacterial communities in biological soil crusts along a revegetation chronosequence in the Tengger Desert, northwest China
Viable cold-tolerant iron-reducing microorganisms in geographically diverse subglacial environments
Diversity and mineral substrate preference in endolithic microbial communities from marine intertidal outcrops (Isla de Mona, Puerto Rico)
Archive of bacterial community in anhydrite crystals from a deep-sea basin provides evidence of past oil-spilling in a benthic environment in the Red Sea
Mechanisms of Trichodesmium demise within the New Caledonian lagoon during the VAHINE mesocosm experiment
Microbial co-occurrence patterns in deep Precambrian bedrock fracture fluids
Effect of light on photosynthetic efficiency of sequestered chloroplasts in intertidal benthic foraminifera (Haynesina germanica and Ammonia tepida)
Seasonal and size-dependent variations in the phytoplankton growth and microzooplankton grazing in the southern South China Sea under the influence of the East Asian monsoon
Characterization of active and total fungal communities in the atmosphere over the Amazon rainforest
Responses of soil microbial communities and enzyme activities to nitrogen and phosphorus additions in Chinese fir plantations of subtropical China
Redox regime shifts in microbially mediated biogeochemical cycles
Differences in microbial community composition between injection and production water samples of water flooding petroleum reservoirs
Coral Pardo-Esté, Juan Castro-Severyn, Francisco Remonsellez, Antonio Maldonado, Inger Heine-Fuster, Hector Pizarro, and Adriana Aránguiz-Acuña
Biogeosciences, 22, 2005–2022, https://doi.org/10.5194/bg-22-2005-2025, https://doi.org/10.5194/bg-22-2005-2025, 2025
Short summary
Short summary
Inka-Coya Lake is located in the Atacama Desert, and this pioneer study characterized the gradient of microbial life along the deep lacustrine sediments that stratified for over 600 years, since the pre-mining period. Our results indicate there are great taxonomic novelty and strong relationships with geochemical composition especially in Cu, Fe, Ni, and V. We propose a clustering of taxa and function in three zones with characteristic taxonomic and functional potential.
Cătălina Haidău, Ionuţ Cornel Mirea, Silviu Constantin, and Oana Teodora Moldovan
Biogeosciences, 22, 1163–1182, https://doi.org/10.5194/bg-22-1163-2025, https://doi.org/10.5194/bg-22-1163-2025, 2025
Short summary
Short summary
Caves are natural archives for reconstructing past climates and environments. A 480 cm sediment profile was dated at 74.7 ± 12.3 to 56 ± 8 ka, with some sections influenced by Last Glacial Maximum flooding. Bacterial diversity shifts with depth, from soil bacteria in upper layers to thermophilic sulfur bacteria in deeper sediments, possibly linked to historic hot springs or sapropels. This study highlights the potential of bacteria as proxies for reconstructing paleoenvironmental conditions.
Taiki Katayama, Hideyoshi Yoshioka, Toshiro Yamanaka, Susumu Sakata, and Yasuaki Hanamura
Biogeosciences, 21, 4273–4283, https://doi.org/10.5194/bg-21-4273-2024, https://doi.org/10.5194/bg-21-4273-2024, 2024
Short summary
Short summary
To understand microbial processes in deep sedimentary environments where the majority of Earth’s prokaryotes are found, we investigated the microbial communities in microbial natural-gas-bearing aquifers at temperatures of 38–81°C, situated above nonmicrobial oil-bearing sediments. Our results indicate that microbial carbon and sulfur cycling is driven by geothermal heating, showing previously overlooked geothermal-heat-driven geochemical and microbiological processes in the deep biosphere.
Taiki Katayama, Reo Ikawa, Masaru Koshigai, and Susumu Sakata
Biogeosciences, 20, 5199–5210, https://doi.org/10.5194/bg-20-5199-2023, https://doi.org/10.5194/bg-20-5199-2023, 2023
Short summary
Short summary
Methane produced by microorganisms in subsurface environments may account for a large fraction of global natural gas reserves. To understand how microbial methane is produced during sediment burial history, we examined methane-bearing aquifers in which temperature and salinity increase with depth. Geochemical and microbiological analyses showed that microbial methane is produced at depth, where microbial activity is stimulated by the increased temperature, and subsequently migrates upwards.
Xin Chen, Weishu Zhao, Liang Dong, Huahua Jian, Lewen Liang, Jing Wang, and Fengping Wang
Biogeosciences, 20, 1491–1504, https://doi.org/10.5194/bg-20-1491-2023, https://doi.org/10.5194/bg-20-1491-2023, 2023
Short summary
Short summary
Here, we studied the effects of metabolism and growth temperature on 2H/1H fractionation between fatty acids and growth water (εFA/water) by Shewanella piezotolerans WP3. Our results show that the εFA/water values display considerable variations for cultures grown on different substrates. Combined with metabolic model analysis, our results indicate that the central metabolic pathways exert a fundamental effect on the hydrogen isotope composition of lipids in heterotrophs.
Ruud Rijkers, Mark Dekker, Rien Aerts, and James T. Weedon
Biogeosciences, 20, 767–780, https://doi.org/10.5194/bg-20-767-2023, https://doi.org/10.5194/bg-20-767-2023, 2023
Short summary
Short summary
Bacterial communities in the soils of the Arctic region decompose soil organic matter to CO2 from a large carbon pool. The amount of CO2 released is likely to increase under future climate conditions. Here, we study how temperature sensitive the growth of soil bacterial communties is for 12 sampling sites in the sub to high Arctic. We show that the optimal growth temperature varies between 23 and 34 °C and is influenced by the summer temperature.
Xiaofeng Dai, Mingming Chen, Xianhui Wan, Ehui Tan, Jialing Zeng, Nengwang Chen, Shuh-Ji Kao, and Yao Zhang
Biogeosciences, 19, 3757–3773, https://doi.org/10.5194/bg-19-3757-2022, https://doi.org/10.5194/bg-19-3757-2022, 2022
Short summary
Short summary
This study revealed the distinct distribution patterns of six key microbial functional genes and transcripts related to N2O sources and sinks in four estuaries spanning the Chinese coastline, which were significantly constrained by nitrogen and oxygen concentrations, salinity, temperature, and pH. The community structure of the nosZ clade II was distinctly different from those in the soil and marine OMZs. Denitrification may principally control the N2O emissions patterns across the estuaries.
Daniel A. Petrash, Ingrid M. Steenbergen, Astolfo Valero, Travis B. Meador, Tomáš Pačes, and Christophe Thomazo
Biogeosciences, 19, 1723–1751, https://doi.org/10.5194/bg-19-1723-2022, https://doi.org/10.5194/bg-19-1723-2022, 2022
Short summary
Short summary
We spectroscopically evaluated the gradients of dissolved C, N, S, Fe and Mn in a newly formed redox-stratified lake. The lake features an intermediate redox state between nitrogenous and euxinic conditions that encompasses vigorous open sulfur cycling fuelled by the reducible Fe and Mn stocks of the anoxic sediments. This results in substantial bottom water loads of dissolved iron and sulfate. Observations made in this ecosystem have relevance for deep-time paleoceanographic reconstructions.
Francisco Díaz-Rosas, Catharina Alves-de-Souza, Emilio Alarcón, Eduardo Menschel, Humberto E. González, Rodrigo Torres, and Peter von Dassow
Biogeosciences, 18, 5465–5489, https://doi.org/10.5194/bg-18-5465-2021, https://doi.org/10.5194/bg-18-5465-2021, 2021
Short summary
Short summary
Coccolithophores are important unicellular algae with a calcium carbonate covering that might be affected by ongoing changes in the ocean due to absorption of CO2, warming, and melting of glaciers. We used the southern Patagonian fjords as a natural laboratory, where chemical conditions are naturally highly variable. One variant of a widespread coccolithophore species can tolerate these conditions, suggesting it is highly adaptable, while others were excluded, suggesting they are less adaptable.
Riccardo Rosselli, Maura Fiamma, Massimo Deligios, Gabriella Pintus, Grazia Pellizzaro, Annalisa Canu, Pierpaolo Duce, Andrea Squartini, Rosella Muresu, and Pietro Cappuccinelli
Biogeosciences, 18, 4351–4367, https://doi.org/10.5194/bg-18-4351-2021, https://doi.org/10.5194/bg-18-4351-2021, 2021
Short summary
Short summary
The bacteria carried by winds over the island of Sardinia in the Mediterranean Sea were collected, and their identities were investigated by reading DNA sequences. The sampling period was the factor that most determined the airborne species composition as its role was stronger than that of dust-carrying storms and of the geographical position of the sampling station. The bacteria found when the sampling was performed in September had more species variety than those collected in May.
Alexander Savvichev, Igor Rusanov, Yury Dvornikov, Vitaly Kadnikov, Anna Kallistova, Elena Veslopolova, Antonina Chetverova, Marina Leibman, Pavel A. Sigalevich, Nikolay Pimenov, Nikolai Ravin, and Artem Khomutov
Biogeosciences, 18, 2791–2807, https://doi.org/10.5194/bg-18-2791-2021, https://doi.org/10.5194/bg-18-2791-2021, 2021
Short summary
Short summary
Microbial processes of the methane cycle were studied in four lakes of the central part of the Yamal Peninsula in an area of continuous permafrost: two large, deep lakes and two small and shallow ones. It was found that only small, shallow lakes contributed significantly to the overall diffusive methane emissions from the water surface during the warm summer season. The water column of large, deep lakes on Yamal acted as a microbial filter preventing methane emissions into the atmosphere.
Martin Vohník
Biogeosciences, 18, 2777–2790, https://doi.org/10.5194/bg-18-2777-2021, https://doi.org/10.5194/bg-18-2777-2021, 2021
Short summary
Short summary
Amphistegina lobifera (Foraminifera) has colonized the Mediterranean through the Suez Canal, often forming thick sediments altering the invaded environments. Little is known about postmortem fate of its shells, so I investigated their turnover in the rhizosphere of the dominant Mediterranean seagrass. Most were bioeroded, likely by cyanobacteria and algae but not fungi occurring in the seagrass roots. Bioerosion may counterbalance accumulation of A. lobifera shells in the seabed substrate.
Carolina Oliveira de Santana, Pieter Spealman, Vânia Maria Maciel Melo, David Gresham, Taíse Bomfim de Jesus, and Fabio Alexandre Chinalia
Biogeosciences, 18, 2259–2273, https://doi.org/10.5194/bg-18-2259-2021, https://doi.org/10.5194/bg-18-2259-2021, 2021
Short summary
Short summary
This study highlights the influence of
tidal zonationon the prokaryotic sediment communities of a pristine mangrove forest. We observed that the variability in environmental factors between tidal zones results in differences in structure, diversity, and the potential function of prokaryotic populations. This suggests that further work is needed in determining the role tidal microhabitat biodiversity has in mangroves.
Emilio Marañón, France Van Wambeke, Julia Uitz, Emmanuel S. Boss, Céline Dimier, Julie Dinasquet, Anja Engel, Nils Haëntjens, María Pérez-Lorenzo, Vincent Taillandier, and Birthe Zäncker
Biogeosciences, 18, 1749–1767, https://doi.org/10.5194/bg-18-1749-2021, https://doi.org/10.5194/bg-18-1749-2021, 2021
Short summary
Short summary
The concentration of chlorophyll is commonly used as an indicator of the abundance of photosynthetic plankton (phytoplankton) in lakes and oceans. Our study investigates why a deep chlorophyll maximum, located near the bottom of the upper, illuminated layer develops in the Mediterranean Sea. We find that the acclimation of cells to low light is the main mechanism involved and that this deep maximum represents also a maximum in the biomass and carbon fixation activity of phytoplankton.
Joost de Vries, Fanny Monteiro, Glen Wheeler, Alex Poulton, Jelena Godrijan, Federica Cerino, Elisa Malinverno, Gerald Langer, and Colin Brownlee
Biogeosciences, 18, 1161–1184, https://doi.org/10.5194/bg-18-1161-2021, https://doi.org/10.5194/bg-18-1161-2021, 2021
Short summary
Short summary
Coccolithophores are important calcifying phytoplankton with an overlooked life cycle. We compile a global dataset of marine coccolithophore abundance to investigate the environmental characteristics of each life cycle phase. We find that both phases contribute to coccolithophore abundance and that their different environmental preference increases coccolithophore habitat. Accounting for the life cycle of coccolithophores is thus crucial for understanding their ecology and biogeochemical impact.
María Cristina Casero, Victoria Meslier, Jocelyne DiRuggiero, Antonio Quesada, Carmen Ascaso, Octavio Artieda, Tomasz Kowaluk, and Jacek Wierzchos
Biogeosciences, 18, 993–1007, https://doi.org/10.5194/bg-18-993-2021, https://doi.org/10.5194/bg-18-993-2021, 2021
Short summary
Short summary
Endolithic microhabitats have been described as the last refuge for life in arid and hyper-arid deserts where life has to deal with harsh environmental conditions, such as those in the Atacama Desert. In this work, three different endolithic microhabitats occurring in gypcrete rocks of the Atacama Desert are characterized, using both microscopy and molecular techniques, to show if the architecture of each microhabitat has an influence on the microbial communities inhabiting each of them.
Jeffrey M. Dick, Miao Yu, and Jingqiang Tan
Biogeosciences, 17, 6145–6162, https://doi.org/10.5194/bg-17-6145-2020, https://doi.org/10.5194/bg-17-6145-2020, 2020
Short summary
Short summary
Many natural environments differ in their range of salt concentration (salinity). We developed a metric for the number of water molecules in formation reactions of different proteins and found that it decreases between freshwater and marine systems and also in laboratory experiments with increasing salinity. These results demonstrate a new type of link between geochemical conditions and the chemical composition of microbial communities that can be useful for models of microbial adaptation.
Subhrangshu Mandal, Sabyasachi Bhattacharya, Chayan Roy, Moidu Jameela Rameez, Jagannath Sarkar, Tarunendu Mapder, Svetlana Fernandes, Aditya Peketi, Aninda Mazumdar, and Wriddhiman Ghosh
Biogeosciences, 17, 4611–4631, https://doi.org/10.5194/bg-17-4611-2020, https://doi.org/10.5194/bg-17-4611-2020, 2020
Short summary
Short summary
Potential roles of polythionates as key sulfur cycle intermediates are less appreciated, apparently because, in most of the natural environments, they do not accumulate to easily detectable levels. Our exploration of the eastern Arabian Sea sediment horizons revealed microbe-mediated production and redox transformations of tetrathionate to be important modules of the in situ sulfur cycle, even as high biotic and abiotic reactivity of this polythionate keeps it hidden from geochemical detection.
Magdalena J. Mayr, Matthias Zimmermann, Jason Dey, Bernhard Wehrli, and Helmut Bürgmann
Biogeosciences, 17, 4247–4259, https://doi.org/10.5194/bg-17-4247-2020, https://doi.org/10.5194/bg-17-4247-2020, 2020
Massimiliano Molari, Felix Janssen, Tobias R. Vonnahme, Frank Wenzhöfer, and Antje Boetius
Biogeosciences, 17, 3203–3222, https://doi.org/10.5194/bg-17-3203-2020, https://doi.org/10.5194/bg-17-3203-2020, 2020
Short summary
Short summary
Industrial-scale mining of deep-sea polymetallic nodules will remove nodules in large areas of the sea floor. We describe community composition of microbes associated with nodules of the Peru Basin. Our results show that nodules provide a unique ecological niche, playing an important role in shaping the diversity of the benthic deep-sea microbiome and potentially in element fluxes. We believe that our findings are highly relevant to expanding our knowledge of the impact associated with mining.
Jun Zhao, Yuanfeng Cai, and Zhongjun Jia
Biogeosciences, 17, 1451–1462, https://doi.org/10.5194/bg-17-1451-2020, https://doi.org/10.5194/bg-17-1451-2020, 2020
Short summary
Short summary
We show that soil pH is a key factor in selecting distinct phylotypes of methanotrophs in paddy soils. Type II methanotrophs dominated the methane oxidation in low-pH soils, while type I methanotrophs were more active in high-pH soils. This pH-based niche differentiation of active methanotrophs appeared to be independent of nitrogen fertilization, but the inhibition of type II methanotrophic rate in low-pH soils by the fertilization might aggravate the emission of methane from paddy soils.
Edwin Sien Aun Sia, Zhuoyi Zhu, Jing Zhang, Wee Cheah, Shan Jiang, Faddrine Holt Jang, Aazani Mujahid, Fuh-Kwo Shiah, and Moritz Müller
Biogeosciences, 16, 4243–4260, https://doi.org/10.5194/bg-16-4243-2019, https://doi.org/10.5194/bg-16-4243-2019, 2019
Short summary
Short summary
Microbial community composition and diversity in freshwater habitats are much less studied compared to marine and soil communities. This study presents the first assessment of microbial communities of the Rajang River, the longest river in Malaysia, expanding our knowledge of microbial ecology in tropical regions. Areas surrounded by oil palm plantations showed the lowest diversity and other signs of anthropogenic impacts included the presence of CFB groups as well as probable algal blooms.
Julia Mitzscherling, Fabian Horn, Maria Winterfeld, Linda Mahler, Jens Kallmeyer, Pier P. Overduin, Lutz Schirrmeister, Matthias Winkel, Mikhail N. Grigoriev, Dirk Wagner, and Susanne Liebner
Biogeosciences, 16, 3941–3958, https://doi.org/10.5194/bg-16-3941-2019, https://doi.org/10.5194/bg-16-3941-2019, 2019
Short summary
Short summary
Permafrost temperatures increased substantially at a global scale, potentially altering microbial assemblages involved in carbon mobilization before permafrost thaws. We used Arctic Shelf submarine permafrost as a natural laboratory to investigate the microbial response to long-term permafrost warming. Our work shows that millennia after permafrost warming by > 10 °C, microbial community composition and population size reflect the paleoenvironment rather than a direct effect through warming.
Blanca Rincón-Tomás, Jan-Peter Duda, Luis Somoza, Francisco Javier González, Dominik Schneider, Teresa Medialdea, Esther Santofimia, Enrique López-Pamo, Pedro Madureira, Michael Hoppert, and Joachim Reitner
Biogeosciences, 16, 1607–1627, https://doi.org/10.5194/bg-16-1607-2019, https://doi.org/10.5194/bg-16-1607-2019, 2019
Short summary
Short summary
Cold-water corals were found at active sites in Pompeia Province (Gulf of Cádiz). Since seeped fluids are harmful for the corals, we approached the environmental conditions that allow corals to colonize carbonates while seepage occurs. As a result, we propose that chemosynthetic microorganisms (i.e. sulfide-oxidizing bacteria and AOM-related microorganisms) play an important role in the colonization of the corals at these sites by feeding on the seeped fluids and avoiding coral damage.
Sylwia Śliwińska-Wilczewska, Agata Cieszyńska, Jakub Maculewicz, and Adam Latała
Biogeosciences, 15, 6257–6276, https://doi.org/10.5194/bg-15-6257-2018, https://doi.org/10.5194/bg-15-6257-2018, 2018
Short summary
Short summary
The present study describes responses of picocyanobacteria (PCY) physiology to different environmental conditions. The cultures were grown under 64 combinations of temperature, irradiance in a photosynthetically active spectrum (PAR), and salinity. The results show that each strain of Baltic Synechococcus sp. behaves differently in respective environmental scenarios. The study develops the knowledge on bloom-forming PCY and reasons further research on the smallest size fraction of phytoplankton.
Jose Luis Otero-Ferrer, Pedro Cermeño, Antonio Bode, Bieito Fernández-Castro, Josep M. Gasol, Xosé Anxelu G. Morán, Emilio Marañon, Victor Moreira-Coello, Marta M. Varela, Marina Villamaña, and Beatriz Mouriño-Carballido
Biogeosciences, 15, 6199–6220, https://doi.org/10.5194/bg-15-6199-2018, https://doi.org/10.5194/bg-15-6199-2018, 2018
Short summary
Short summary
The effect of inorganic nutrients on planktonic assemblages has been traditionally assessed by looking at concentrations rather than fluxes of nutrient supply. However, in near-steady-state systems such as subtropical gyres, nitrate concentrations are kept close to the detection limit due to phytoplankton uptake. Our results, based on direct measurements of nitrate diffusive fluxes, support the key role of nitrate supply in controlling the structure of marine picoplankton communities.
Jörn Wehking, Daniel A. Pickersgill, Robert M. Bowers, David Teschner, Ulrich Pöschl, Janine Fröhlich-Nowoisky, and Viviane R. Després
Biogeosciences, 15, 4205–4214, https://doi.org/10.5194/bg-15-4205-2018, https://doi.org/10.5194/bg-15-4205-2018, 2018
Short summary
Short summary
Archaea as a third domain of life play an important role in soils and marine environments. Although archaea have been found in air as a part of the atmospheric bioaerosol, little is known about their atmospheric dynamics due to their low number and challenging analysis.
Here we present a DNA-based study of airborne archaea, show seasonal dynamics, and discuss anthropogenic influences on the diversity, composition, and abundances of airborne archaea.
Nicholas Bock, France Van Wambeke, Moïra Dion, and Solange Duhamel
Biogeosciences, 15, 3909–3925, https://doi.org/10.5194/bg-15-3909-2018, https://doi.org/10.5194/bg-15-3909-2018, 2018
Short summary
Short summary
We report the distribution of major nano- and pico-plankton groups in the western tropical South Pacific. We found microbial community structure to be typical of highly stratified regions of the open ocean, with significant contributions to total biomass by picophytoeukaryotes, and N2 fixation playing a central role in regulating ecosystem processes. Our results also suggest a reduction in the importance of predation in regulating bacteria populations under nutrient-limited conditions.
Michelle Szyja, Burkhard Büdel, and Claudia Colesie
Biogeosciences, 15, 1919–1931, https://doi.org/10.5194/bg-15-1919-2018, https://doi.org/10.5194/bg-15-1919-2018, 2018
Short summary
Short summary
Ongoing human impact transforms habitats into surfaces lacking higher vegetation. Here, biological soil crusts (BSCs) provide ecosystem services like soil creation and carbon uptake. To understand the functioning of these areas, we examined the physiological capability of early successional BSCs. We found features enabling BSCs to cope with varying climatic stresses. BSCs are important carbon fixers independent of the dominating organism. We provide baseline data for modeling carbon fluxes.
Petr Kotas, Hana Šantrůčková, Josef Elster, and Eva Kaštovská
Biogeosciences, 15, 1879–1894, https://doi.org/10.5194/bg-15-1879-2018, https://doi.org/10.5194/bg-15-1879-2018, 2018
Short summary
Short summary
The soil microbial properties were investigated along altitudinal gradients in the Arctic. Systematic altitudinal shift in MCS resulting in high F / B ratios at the most elevated sites was observed. The changes in composition, size and activity of microbial communities were mainly controlled through the effect of vegetation on edaphic properties and by bedrock chemistry. The upward migration of vegetation due to global warming will likely diminish the spatial variability in microbial properties.
Tung-Yi Huang, Bing-Mu Hsu, Wei-Chun Chao, and Cheng-Wei Fan
Biogeosciences, 15, 1815–1826, https://doi.org/10.5194/bg-15-1815-2018, https://doi.org/10.5194/bg-15-1815-2018, 2018
Short summary
Short summary
The n-alkane in litterfall and the microbial community in litter layer in different habitats of lowland subtropical rainforest were studied. We revealed that the plant vegetation of forest not only dominated the n-alkane input of habitats but also governed the diversity of microbial community of litter layer. In this study, we found that the habitat which had high n-alkane input induced a shift of relative abundance toward phylum of Actinobacteria and the growth of alkB gene contained bacteria.
Jennifer Caesar, Alexandra Tamm, Nina Ruckteschler, Anna Lena Leifke, and Bettina Weber
Biogeosciences, 15, 1415–1424, https://doi.org/10.5194/bg-15-1415-2018, https://doi.org/10.5194/bg-15-1415-2018, 2018
Short summary
Short summary
In our study we analyzed the efficiency of different chlorophyll extraction solvents and investigated the effect of different preparatory steps to determine the optimal extraction method for biological soil crusts. Based on our results we confirm a DMSO-based chlorophyll extraction method without grinding pretreatment and suggest to insert an intermediate shaking step for complete chlorophyll extraction.
Zhiwei Xu, Guirui Yu, Xinyu Zhang, Nianpeng He, Qiufeng Wang, Shengzhong Wang, Xiaofeng Xu, Ruili Wang, and Ning Zhao
Biogeosciences, 15, 1217–1228, https://doi.org/10.5194/bg-15-1217-2018, https://doi.org/10.5194/bg-15-1217-2018, 2018
Short summary
Short summary
Forest types with specific soil conditions supported the development of distinct soil microbial communities with variable functions. Our results indicate that the main controls on soil microbes and functions vary across forest ecosystems in different climatic zones. This information will add value to the modeling of microbial processes and will contribute to carbon cycling on a large scale.
Patrick Jung, Laura Briegel-Williams, Anika Simon, Anne Thyssen, and Burkhard Büdel
Biogeosciences, 15, 1149–1160, https://doi.org/10.5194/bg-15-1149-2018, https://doi.org/10.5194/bg-15-1149-2018, 2018
Short summary
Short summary
Arctic, Antarctic and alpine biological soil crusts (BSCs) are formed by adhesion of soil particles to cyanobacteria. BSCs influence ecosystems services like soil erodibility and chemical cycles. In cold environments degradation rates are low and BSCs increase soil organic carbon through photosynthesis, whereby these soils are considered as CO2 sinks. This work provides a novel method to visualize BSCs with a focus on cyanobacteria and their contribution to soil organic carbon.
Rongliang Jia, Yun Zhao, Yanhong Gao, Rong Hui, Haotian Yang, Zenru Wang, and Yixuan Li
Biogeosciences, 15, 1161–1172, https://doi.org/10.5194/bg-15-1161-2018, https://doi.org/10.5194/bg-15-1161-2018, 2018
Short summary
Short summary
Why can biocrust moss survive and flourish in these habitats when stressed simultaneously by drought and sand burial? A field experiment was conducted to assess the combined effects of the two stressors on Bryum argenteum within biocrust. The two stressors did not exacerbate the single negative effects; their mutually antagonistic effect on the physiological vigor of B. argenteum was found, and it provided an opportunity for it to overcome the two co-occurring stressors in arid sandy ecosystems.
Johanna Maltby, Lea Steinle, Carolin R. Löscher, Hermann W. Bange, Martin A. Fischer, Mark Schmidt, and Tina Treude
Biogeosciences, 15, 137–157, https://doi.org/10.5194/bg-15-137-2018, https://doi.org/10.5194/bg-15-137-2018, 2018
Short summary
Short summary
The activity and environmental controls of methanogenesis (MG) within the sulfate-reducing zone (0–30 cm below the seafloor) were investigated in organic-rich sediments of the seasonally hypoxic Eckernförde Bay, SW Baltic Sea. MG activity was mostly linked to non-competitive substrates. The major controls identified were organic matter availability, C / N, temperature, and O2 in the water column, revealing higher rates in warm, stratified, hypoxic seasons compared to colder, oxygenated seasons.
Rebecca Elizabeth Cooper, Karin Eusterhues, Carl-Eric Wegner, Kai Uwe Totsche, and Kirsten Küsel
Biogeosciences, 14, 5171–5188, https://doi.org/10.5194/bg-14-5171-2017, https://doi.org/10.5194/bg-14-5171-2017, 2017
Short summary
Short summary
In this study we show increasing organic matter (OM) content on ferrihydrite surfaces enhances Fe reduction by the model Fe reducer S. oneidensis and a microbial consortia extracted from peat. Similarities in reduction rates between S. oneidensis and the consortia suggest electron shuttling dominates in OM-rich soils. Community profile analyses showed enrichment of fermenters with pure ferrihydrite, whereas OM–mineral complexes favored enrichment of Fe-reducing Desulfobacteria and Pelosinus sp.
Yu-Te Lin, Zhongjun Jia, Dongmei Wang, and Chih-Yu Chiu
Biogeosciences, 14, 4879–4889, https://doi.org/10.5194/bg-14-4879-2017, https://doi.org/10.5194/bg-14-4879-2017, 2017
Short summary
Short summary
We evaluated the bacterial composition and diversity of bamboo soils sampled at different elevations and incubated at different temperatures. Soil respiration was greater at higher elevation and temperature. Soil bacterial structure and diversity showed variable under different incubation times and temperatures. Increases in temperature increased soil respiration and consumption of soil soluble carbon and nitrogen, thus influencing the bacterial diversity and structure at different elevations.
Lichao Liu, Yubing Liu, Peng Zhang, Guang Song, Rong Hui, Zengru Wang, and Jin Wang
Biogeosciences, 14, 3801–3814, https://doi.org/10.5194/bg-14-3801-2017, https://doi.org/10.5194/bg-14-3801-2017, 2017
Short summary
Short summary
We studied the development process of bacterial community structure of biological soil crusts (BSCs) along a revegetation chronosequence by Illumina MiSeq sequencing in the Tengger Desert. Our results indicated (1) a shift of bacterial composition related to their function in the crust development process; (2) bacterial diversity and richness consistent with the recovery phase of soil properties; and (3) bacteria as key contributors to the BSC succession process.
Sophie L. Nixon, Jon P. Telling, Jemma L. Wadham, and Charles S. Cockell
Biogeosciences, 14, 1445–1455, https://doi.org/10.5194/bg-14-1445-2017, https://doi.org/10.5194/bg-14-1445-2017, 2017
Short summary
Short summary
Despite their permanently cold and dark characteristics, subglacial environments (glacier ice–sediment interface) are known to harbour active microbial communities. However, the role of microbial iron cycling in these environments is poorly understood. Here we show that subglacial sediments harbour active iron-reducing microorganisms, and they appear to be cold-adapted. These results may have important implications for global biogeochemical iron cycling and export to marine ecosystems.
Estelle Couradeau, Daniel Roush, Brandon Scott Guida, and Ferran Garcia-Pichel
Biogeosciences, 14, 311–324, https://doi.org/10.5194/bg-14-311-2017, https://doi.org/10.5194/bg-14-311-2017, 2017
Short summary
Short summary
Endoliths are a prominent bioerosive component of intertidal marine habitats, traditionally thought to be formed by a few cyanobacteria, algae and fungi. Using molecular techniques, however, we found that endoliths from Mona Island, Puerto Rico, were of high diversity, well beyond that reported in traditional studies. We also found evidence for substrate specialization, in that closely related cyanobacteria seem to have diversified to specialize recurrently to excavate various mineral substrates
Yong Wang, Tie Gang Li, Meng Ying Wang, Qi Liang Lai, Jiang Tao Li, Zhao Ming Gao, Zong Ze Shao, and Pei-Yuan Qian
Biogeosciences, 13, 6405–6417, https://doi.org/10.5194/bg-13-6405-2016, https://doi.org/10.5194/bg-13-6405-2016, 2016
Short summary
Short summary
Mild eruption of hydrothermal solutions on deep-sea benthic floor can produce anhydrite crystal layers, where microbes are trapped and preserved for a long period of time. These embedded original inhabitants will be biomarkers for the environment when the hydrothermal eruption occurred. This study discovered a thick anhydrite layer in a deep-sea brine pool in the Red Sea. Oil-degrading bacteria were revealed in the crystals with genomic and microscopic evidence.
Dina Spungin, Ulrike Pfreundt, Hugo Berthelot, Sophie Bonnet, Dina AlRoumi, Frank Natale, Wolfgang R. Hess, Kay D. Bidle, and Ilana Berman-Frank
Biogeosciences, 13, 4187–4203, https://doi.org/10.5194/bg-13-4187-2016, https://doi.org/10.5194/bg-13-4187-2016, 2016
Short summary
Short summary
The marine cyanobacterium Trichodesmium spp. forms massive blooms important to carbon and nitrogen cycling in the oceans that often collapse abruptly. We investigated a Trichodesmium bloom in the lagoon waters of New Caledonia to specifically elucidate the cellular processes mediating the bloom decline. We demonstrate physiological, biochemical, and genetic evidence for nutrient and oxidative stress that induced a genetically controlled programmed cell death (PCD) pathway leading to bloom demise.
Lotta Purkamo, Malin Bomberg, Riikka Kietäväinen, Heikki Salavirta, Mari Nyyssönen, Maija Nuppunen-Puputti, Lasse Ahonen, Ilmo Kukkonen, and Merja Itävaara
Biogeosciences, 13, 3091–3108, https://doi.org/10.5194/bg-13-3091-2016, https://doi.org/10.5194/bg-13-3091-2016, 2016
Short summary
Short summary
The microbial communities of up to 2.3 km depth of Precambrian crystalline bedrock fractures share features with serpenization-driven microbial communities in alkaline springs and subsurface aquifers. This study suggests that phylotypes belonging to Burkholderiales and Clostridia are possible "keystone microbial species" in Outokumpu deep biosphere. Many of the keystone species belong to the rare biosphere with low abundance but a wide range of carbon substrates and a capacity for H2 oxidation.
Thierry Jauffrais, Bruno Jesus, Edouard Metzger, Jean-Luc Mouget, Frans Jorissen, and Emmanuelle Geslin
Biogeosciences, 13, 2715–2726, https://doi.org/10.5194/bg-13-2715-2016, https://doi.org/10.5194/bg-13-2715-2016, 2016
Short summary
Short summary
Some benthic foraminifera can incorporate chloroplasts from microalgae. We investigated chloroplast functionality of two benthic foraminifera (Haynesina germanica & Ammonia tepida) exposed to different light levels. Only H. germanica was capable of using the kleptoplasts, showing net oxygen production. Chloroplast functionality time was longer in darkness (2 weeks) than at high light (1 week). Kleptoplasts are unlikely to be completely functional, thus requiring continuous chloroplast resupply.
L. Zhou, Y. Tan, L. Huang, Z. Hu, and Z. Ke
Biogeosciences, 12, 6809–6822, https://doi.org/10.5194/bg-12-6809-2015, https://doi.org/10.5194/bg-12-6809-2015, 2015
Short summary
Short summary
We observed that phytoplankton biomass and growth rate (μ), microzooplankton grazing rate (m), and coupling (correlation) between the μ and m significantly varied between the summer and winter, and microzooplankton selectively grazed more on the larger-sized phytoplankton, and a low grazing impact on phytoplankton (m/μ < 50%) in the SSCS. The salient seasonal variations in μ and m, and their coupling were closely related to environmental variables under the influence of the East Asian monsoon.
A. M. Womack, P. E. Artaxo, F. Y. Ishida, R. C. Mueller, S. R. Saleska, K. T. Wiedemann, B. J. M. Bohannan, and J. L. Green
Biogeosciences, 12, 6337–6349, https://doi.org/10.5194/bg-12-6337-2015, https://doi.org/10.5194/bg-12-6337-2015, 2015
Short summary
Short summary
Fungi in the atmosphere can affect precipitation by nucleating the formation of clouds and ice. This process is important over the Amazon rainforest where precipitation is limited by the types and amount of airborne particles. We found that the total and metabolically active fungi communities were dominated by different taxonomic groups, and the active community unexpectedly contained many lichen fungi, which are effective at nucleating ice.
W. Y. Dong, X. Y. Zhang, X. Y. Liu, X. L. Fu, F. S. Chen, H. M. Wang, X. M. Sun, and X. F. Wen
Biogeosciences, 12, 5537–5546, https://doi.org/10.5194/bg-12-5537-2015, https://doi.org/10.5194/bg-12-5537-2015, 2015
Short summary
Short summary
We examined how N and P addition influenced soil microbial community composition and enzyme activities in subtropical China. The results showed that C and N cycling enzymes were more sensitive to nutrient additions than P cycling enzymes and Gram-positive bacteria were most closely related to soil nutrient cycling enzymes. Combined additions of N and P fertilizer are recommended to promote soil fertility and microbial activity in this kind of plantation.
T. Bush, I. B. Butler, A. Free, and R. J. Allen
Biogeosciences, 12, 3713–3724, https://doi.org/10.5194/bg-12-3713-2015, https://doi.org/10.5194/bg-12-3713-2015, 2015
Short summary
Short summary
Despite their global importance, redox reactions mediated by microorganisms are often crudely represented in biogeochemical models. We show that including the dynamics of microbial growth in such a model can cause sudden shifts between redox states in response to an environmental change. We identify the conditions required for these redox regime shifts, and predict that they are likely in the modern day sulfur and nitrogen cycles, and potentially the iron cycle in the ancient ocean.
P. K. Gao, G. Q. Li, H. M. Tian, Y. S. Wang, H. W. Sun, and T. Ma
Biogeosciences, 12, 3403–3414, https://doi.org/10.5194/bg-12-3403-2015, https://doi.org/10.5194/bg-12-3403-2015, 2015
Short summary
Short summary
Microbial communities in injected water are expected to have a significant influence on those of reservoir strata in long-term water-flooding petroleum reservoirs. We thereby investigated the similarities and differences in microbial communities in water samples collected from the wellhead and downhole of injection wells, and from production wells in a homogeneous reservoir and a heterogeneous reservoir using high-throughput sequencing.
Cited articles
Alpermann, T. J., Beszteri, B., John, U., Tillmann U., and Cembella, A. D.: Implications of life-history transitions on the population genetic structure of the toxigenic marine dinoflagellate Alexandrium tamarense, Mol. Ecol., 18, 2122–2133, 2009.
Arnaud-Haond, S. and Belkhir K..: GenClone 1.0 a new program to analyse genetics data on clonal organisms, Mol. Ecol. Notes, 7, 15–17, 2007.
Balestreri C. and Schroeder D.: Coccolithophore culture collection and DNA/RNA isolation from samples and bioassays during UKOA cruise D366 around the British Isles, British Oceanographic Data Centre, Nat. Environ. Res. Coun., UK, https://doi.org/10/ts8, 2014.
Bruvo, R., Michiels N. K., D'Souza, T. G., and Schulenburg, H.: A simple method for the calculation of microsatellite genotype distances irrespective of ploidy level, Mol. Ecol., 13, 2101–2106, 2004.
Boissinot, S. and Boursot, P.: Discordant phylogeographic patterns between the Y chromosome and mitochondrial DNA in the house mouse: selection on the Y chromosome?, Genetics, 146, 1019–1034, 1997.
Casabianca, S., Penna, A., Pecchioli, E., Jordi, A., Basterretxea, G., and Vernesi, C.: Population genetic structure and connectivity of the harmful dinoflagellate Alexandrium minutum in the Mediterranean Sea, Proc. R. Soc. B, 279, 129–138, 2010.
Chepurnov, V. A., Mann, D. G., Sabbe, K., Vannerum, K., Casteleyn, G., Verleyen E., Peperzak, L., and Vyverman, W.: Sexual reproduction, mating system, chloroplast dynamics and abrupt cell size reduction in Pseudo-nitzschia pungens from the North Sea (Bacillariophyta), Eur. J. Phycol., 40, 379–395, 2005.
Clark, L. V. and Jasieniuk, M.: Polysat an R package for polyploid microsatellite analysis, Mol. Ecol. Res., 11, 562–-566, 2011.
Cook, S. S., Whittock, L., Wright, S. W., and Hallegraeff, G. M.: Photosynthetic pigment and genetic differences between two Southern Ocean morphotypes of Emiliania huxleyi (Haptophyta), J. Phycol., 47, 615–626, 2011.
Cook, S. S., Jones, R. C., Vaillancourt, R. E., and Hallegraeff, G. M.: Genetic differentiation among Australian and Southern Ocean populations of the eubiquitous coccolithophore Emiliania huxleyi (Haptophyta), Phycologia, 52, 368–374, 2013.
Corstjens, P., van der Kooij, A., Linschooten, C., Brouwers, G. J., Westbroek, P., and deVrind-de Jong, E. W.: GPA, a calcium binding protein in the coccolithophorid Emiliania huxleyi (Prymnesiophyceae), J. Phycol., 34, 622–630, 1998.
Coxall, H. K., Wilson, P. A., Pälike, H., Lear, C. H., and Backman, J.: Rapid stepwise onset of Antarctic glaciation and deeper calcite compensation in the Pacific Ocean, Nature, 433, 53–57, 2005.
Cutter, A. D., Jovelin, R., and Dey, A.: Molecular hyperdiversity and evolution in very large populations, Mol. Ecol. 22, 2074–2095, 2013.
Dorken, M. E. and Eckert, C. G.: Severely reduced sexual reproduction in northern populations of a clonal plant, J. Ecol., 89, 339–350, 2001.
Ellstrand, N. C. and Roose, M. L.: Patterns of genotypic diversity in clonal plant species, Am. J. Bot., 74, 123–131, 1987.
Erdner, D. L., Richlen, M., McCauley, L. A. R., and Anderson, D. M.: Diversity and dynamics of a widespread bloom of the toxic dinoflagellate Alexandrium fundyense, PLoS ONE, 6, e22965, https://doi.org/10.1371/journal.pone.0022965, 2011.
Evans, K. M., Kühn, S. F., and Hayes, P. K.: High levels of genetic diversity and low levels of genetic differentiation in North Sea Pseudo-nitzchia pungens (Bacillariophyceae) populations, J. Phycol., 41, 506–514, 2005.
Excoffier, L., Smouse, P., and Quattro, J.: Analysis of molecular variance inferred from metric distances among DNA haplotypes: Application to human mitochondrial DNA restriction data, Genetics, 131, 479–491, 1992.
Frada, M., Probert, I., Allen, A. E., Wilson, W. H., and deVargas, C.: The "Cheshire Cat" escape strategy of the coccolithophore Emiliania huxleyi in response to viral infection, Proc. Natl. Acad. Sci. USA, 105, 15944–15949, 2008.
Frada, M. J., Bidle, K. D., Probert I., and de Vargas C.: In situ survey of life cycle phases of the coccolithophore Emiliania huxleyi (Haptophyta), Environ. Microbiol., 14, 1558–1569, 2012.
Guillard, R. R. L.: Culture of phytoplankton for feeding marine invertebrates, edited by: Smith, W. L. and Chanley, M. H., Culture of Marine Invertebrates Animals, Plenum, New York, 296–360, 1975.
Hagino, K., Bendif, E. M., Young, J. R., Kogame, K., Probert, I., Takano, Y., Horiguchi, T., De Vargas, C., and Okada, H.: New evidence for morphological and genetic variation in the cosmopolitan coccolithophore Emiliania huxleyi (Prymnesiophyceae) from the cox1b-ATP4 genes, J. Phycol., 47, 1164–1176, 2011.
Halkett, F., Simon, J. C., and Balloux, F.: Tackling the population genetics of clonal and partially clonal organisms. Trends Ecol. Evol., 20, 194–201, 2005.
Helaouët, P., Beaugrand, G., and Reid, P. C.: Macrophysiology of Calanus finmarchicus in the North Atlantic Ocean, Prog. Oceanogr., 91, 217–228, 201.
Hinz, D. J.: Emiliania huxleyi and climate change: a genetic and biogeographic investigation of bloom dynamics for a key phytoplankton species in the global carbon cycle, University of Southampton, PhD Thesis, 169 pp., 2010.
Iglesias-Rodriguez, M. D., Garcia Saez, A., Groben, R., Edwards, K. J., Batley, J., Medlin, L. K., and Hayes, P. K.: Polymorphic microsatellite loci in global populations of the marine coccolithophorid Emiliania huxleyi, Mol. Ecol. Notes, 2, 495–497, 2002.
Iglesias-Rodriguez, M. D., Schofield, O. M., Batley, J., Medlin, L. K., and Hayes, P. K.: Intraspecific genetic diversity in the marine coccolithophore Emiliania huxleyi (Prymnesiophyceae): the use of microsatellite analysis in marine phytoplankton population studies, J. Phycol., 42, 526–536, 2006.
IPCC: Climate Change 2007: Synthesis report, Contribution of working groups I, 2007.
Kalinowski, S. T.: HP-RARE 1.0 a computer program for performing rarefaction on measures of allelic richness, Mol. Ecol. Notes, 5, 187–189, 2005.
Kalinowski, S. T. and Taper, M. L..: Maximum likelihood estimation of the frequency of null alleles at microsatellite loci, Conserv. Genetics, 7, 991–995, 2006.
Krueger-Hadfield, S. A.: Structure des populations chez l'algue rouge haploid-diploïde Chondrus crispus: système de reproduction, differérenciation génétique et épidémiologie. Université de Pierre et Marie Curie, Paris, Pontificia Universidad Católica de Chile, Santiago, PhD Thesis, 2011.
Krueger-Hadfield, S. A., Collén, J., Daguin, C., and Valero, M.: Distinguishing among gents and genetic population structure in the haploid-diploid seaweed Chondrus crispus (Rhodophyta), J. Phycol., 47, 440–450, 2011.
Krueger-Hadfield, S. A., Roze, D., Mauger, S., and Valero, M.: Intergametophytic selfing and microgeographic genetic structure shape populations of the intertidal red seaweed Chondrus crispus (Rhodophyta), Mol. Ecol., 22, 3242–3260, 2013.
Langer, G., Nehrke, G., Probert, I., Ly, J., and Ziveri, P.: Strain-specific responses of Emiliania huxleyi to changing seawater carbonate chemistry, Biogeosciences, 6, 2637–2646, https://doi.org/10.5194/bg-6-2637-2009, 2009.
Le Quéré, C., Peters, G. P., Andres, R. J., Andrew, R. M., Boden, T. A., Ciais, P., Friedlingstein, P., Houghton, R. A., Marland, G., Moriarty, R., Sitch, S., Tans, P., Arneth, A., Arvanitis, A., Bakker, D. C. E., Bopp, L., Canadell, J. G., Chini, L. P., Doney, S. C., Harper, A., Harris, I., House, J. I., Jain, A. K., Jones, S. D., Kato, E., Keeling, R. F., Klein Goldewijk, K., Körtzinger, A., Koven, C., Lefèvre, N., Maignan, F., Omar, A., Ono, T., Park, G.-H., Pfeil, B., Poulter, B., Raupach, M. R., Regnier, P., Rödenbeck, C., Saito, S., Schwinger, J., Segschneider, J., Stocker, B. D., Takahashi, T., Tilbrook, B., van Heuven, S., Viovy, N., Wanninkhof, R., Wiltshire, A., and Zaehle, S.: Global carbon budget 2013, Earth Syst. Sci. Data, 6, 235–263, https://doi.org/10.5194/essd-6-235-2014, 2014.
Li, Y-C., Korol, A. B., Fahima, T., Beiles, A., and Nevo, E.: Microsatellites: genomic distribution, putative functions and mutational mechanisms: a review, Mol. Ecol., 11, 2453–2465, 2002.
Lin, X., Hull, C. M., and Heitman, J.: Sexual reproduction between partners of the same mating type in Cryptococcus neoformans, Nature, 434, 1017–1021, 2005.
Lohbeck, K. T., Riebesell, U., and Reusch, T. B. H.: Adaptive evolution of a key phytoplankton species to ocean acidification, Nature Geoscience, 5, 346–351, 2012.
Lohbeck, K. T., Riebesell, U., Collins, S., and Reusch. T. B. H.: Functional Genetic Divergence in high CO2 adapted Emiliania huxleyi populations, Evolution, 67, 1892–1900, 2013.
Mackinder, L., Bach, L, Schulz, K., Wheeler, G., Schroeder, D., Riebesell, U., and Brownlee, C.: The molecular basis of inorganic carbon uptake mechanisms in the coccolithophore Emiliania huxleyi, Eur. J. Phycol., 46, 142–143, 2011a.
Mackinder, L., Wheeler, G., Schroeder, D., von Dassow, P., Riebesell, U., and Brownlee, C.: Expression of biomineralization-related ion transport genes in Emiliania huxleyi, Environ. Microbiol., 13, 3250–3265, 2011b.
Martínez-Martínez, J., Schroeder, D. C., Larsen, A., Bratbak, G., and Wilson, W. H.: Molecular dynamics of Emiliania huxleyi and co-occurring viruses during two separate mesocosm studies, Appl. Environ. Microbiol., 73, 554–562, 2007.
Martinez-Martinez, J., Schroeder, D., and Wilson, W. H.: Dynamics and genotypic composition of Emiliania huxleyi and their co-occurring viruses during a coccolithophore bloom in the North Sea, FEMS Microbiol. Ecol., 81, 315–323, 2012.
Miller, P., Groom, S., McManus, A., Selley, J., and Mironnet, N.: Panorama: a semi-automated AVHRR and CZCS system for observation of coastal and ocean processes, RSS97: Observations and Interactions, P. Rem. Sens. Soc., Reading, 539–544, 1997.
Oksanen, J., Blanchet, F. G., Kindt, R., Legendre, P., Minchin, P. R., O'Hara, R. B , Simpson, G. L., Solymos, P., Stevens, M. H. H., and Wagner, H.: vegan Community ecology package, R package version 2.0-5., http://CRAN.R-project.org/package=vegan, 2012.
Peakall, R. and Smouse, P. E,: GENALEX 6.2: genetic analysis in Excel. Population genetic software for teaching and research, Mol. Ecol. Notes, 6, 288–295, 2006.
Peakall, R. and Smouse, P. E.: GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research-an update, Bioinformatics, 28, 2537–2539, 2012.
Poulton, A. J., Stinchcombe, M. C., Achterberg, E. P., Bakker, D. C. E., Dumousseaud, C., Lawson, H. E., Lee, G. A., Richier, S., Suggett, D. J., and Young, J. R.: Coccolithophores on the north-west European shelf: calcification rates and environmental controls, Biogeosciences, 11, 3919–3940, https://doi.org/10.5194/bg-11-3919-2014, 2014.
Raffi, I., Backman, J., Fornaciari, E., Pälike, H., Rio, D., Lourens, L., and Hilgen, F.: A review of calcareous nannofossil astrobiochronology encompassing the past 25 million years, Quat. Sci. Rev., 25, 3113–3137, 2006.
Riebesell, U., Körtzinger, A., and Oschlies, A.: Sensitivities of marine carbon fluxes to ocean change, Proc. Natl Acad. Sci. USA, 106, 20802–20809, 2009.
Riebesell, U. and Tortell, P. D.: Effects of ocean acidification on pelagic organisms and ecosystems, in: Ocean Acidification, edited by: Gattuso, J.-P. and Hansson, L., Oxford University Press, 99–121, 2011.
Robertson, J. E., Robinson, C., Turner, D. R., Holligan, P., Watson, A. J., Boyd, P., Fernandez, E., and Finch M.: The impact of a coccolithophore bloom on oceanic carbon uptake in the northeast Atlantic during summer 1991, Deep-Sea Res. Part I, 41, 297–314, 1994.
Rokitta, S. D., de Nooijer, L. J., Trimborn, S., de Vargas, C., Rost, B., and John, U.: Transcriptome analyses reveal differential gene expression patterns between the life-cycle stages of Emiliania huxleyi (Haptophyta) and reflect specialization to different ecological niches, J. Phycol., 47, 829–838, 2011.
Rousset, F.: Genepop'007: a complete reimplementation of the Genepop software for Windows and Linux, Mol. Ecol. Res., 8, 103–106, 2008.
Rynearson, T. A. and Armbrust, E. V.: DNA fingerprinting reveals extensive genetic diversity in a field population of the centric diatom Ditylum brightwellii, Limnol. Oceanogr., 45, 1329–1340, 2000.
Rynearson, T. A. and Armbrust. E. V.: Genetic differentiation among populations of the planktonic marine diatom Ditylum brightwellii (bacillariophyceae), J Phycology, 40, 34–43, 2004.
Rynearson, T. A and Armbrust, E. V.: Maintenance of clonal diversity during a spring bloom of the centric diatom Ditylum brightwellii, Mol. Ecol., 14, 1631–1640, 2005.
Rynearson, T. A., Lin, E. O., Horner, R. A., and Armbrust. E. V.: Gene flow and metapopulation structure in the planktonic diatom Ditylum brightwellii, Protist, 160, 111–121, 2009.
Schlötterer, C.: Are microsatellites really simple sequences?, Current Biology, 8, 132–134, 1998.
Schroeder, D. C., Oke, J., Malin, G., and Wilson, W. H.: Coccolithovirus (Phycodnaviridae): characterisation of a new large dsDNA algal virus that infects Emiliania huxleyi, Archiv. Virol., 147, 1685–1698, 2002.
Schroeder, D. C., Oke, J., Hall, M., Malin, G. and Wilson, W. H.: Virus succession observed during an Emiliania huxleyi bloom, Appl. Environ. Microbiol., 69, 2484–2490, 2003.
Schroeder, D. C., Biggi, G. F., Hall, M., Davy, J., Martinez Martinez, J., Richardson, A., Malin G., and Wilson, W. H.: A genetic marker to separate Emiliania huxleyi (Prymnesiophyceae) morphotypes, J. Phycol., 41, 874–879, 2005.
Schuller, D., Cardoso, F., Sousa, S., Gomes, P., Gomes, A. C. , Santos, M. A. S., and Casal, M.: Genetic diversity and population structure of Saccharomyces cerevisiae strains isolated from different grape varieties and winemaking regions, PLoS ONE, 7, e32507, https://doi.org/10.1371/journal.pone.0032507, 2012.
Shutler, J. D., Smyth, T. J., Land, P. E., and Groom, S. B.: A near-real time automatic MODIS data processing system, I. J. Rem. Sens., 26, 1049–1055, 2005.
Selkoe, K. A. and Toonen, R. J.: Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers, Ecol. Lett., 9, 615–629, 2006.
Sokal, R. R. and Rohlf, F. J.: Biometry: the principles and practice of statistics in biological research, 3rd Edn., W. H. Freeman and Co., New York, 1995.
Tesson, S. V. M., Legrand, C., van Oosterhout, C., Montresor, M., Kooistra, W., and Procaccini, G.: Mendelian inheritance pattern and high mutation rates of microsatellite alleles in the diatom Pseudo-nitzschia multistriata, Protist, 164, 89–100, 2013.
Turley, C., Brownlee, C., Findlay, H.S., Mangi, S., Ridgwell, A., Schmidt, D. N., and Schroeder, D. C.: Ocean Acidification in MCCIP Annual Report Card 2010-11, MCCIP Science Review, www.mccip.org.uk/, 27 pp., 2010.
Tsai, I. J., Bensasson, D., Burt, A., and Koufopanou, V.: Population genomics of the wild yeast Saccharomyces paradoxus quantifying the life cycle, Proc. Natl Acad. Sci. USA, 105, 4957–4962, 2008.
van Bleijswijk, J. D. L., van der Wal, P., Kempers, E. S., Veldhuis, M.J.W, Young, J. R., Muyzer, G., de Vrind-De Jong, E., and Westbroek, P.: Distribution of two types of Emiliania huxleyi (Prymnesiophyceae) in the Northeast Atlantic region as determined by immunofluorescence and coccolithmorphology, J. Phycol., 27, 566–570, 1991.
van Bleijswijk, J. D. L., Kempers, R., Veldhuis, M. J., and Westbroek, P.: Cell and growth characteristics of types A and B of Erniliania huxleyi (Prymnesiophyceae) as determined by flow cytometry and chemical analysis, J. Phycol., 30, 230–240, 1994.
Van Kuren, N. W., den Bakker, H. C., Morton, J. B., and Pawlowska, T. E.: Ribosomal RNA gene diversity, effective population size, and evolutionary longevity in asexual Glomeromycota, Evolution, 67, 207–224, 2012.
Walser, B. and Haag, C. R.: Strong intraspecific variation in genetic diversity and genetic differentiation in Daphnia magna – the effects of population turnover and population size, Mol. Ecol., 21, 851–861, 2012.
Ward, J. H.: Hierarchical grouping to optimize an objective function, J. Amer. Statistical Assn., 58, 236–244, 1963.
Westbroek, P., Brown C. W., van Bleijswijk J., Brownlee C., Brummer G.J., Conte M., Egge J., Fernández E., Jordan R., Knappertsbusch M., Stefels J., Veldhuis M., van der Wal P., and Young, J.: A model system approach to biological climate forcing. The example of Emiliania huxleyi, Glob. Planet. Change, 8, 27–46, 1993.
Young, J., Geisen, M., Cros, L., Kleijne, A., Probert, I., Sprengel, C., and Ostergaard, J. B.: A guide to extant coccolithophore taxonomy, J. Nannoplankton. Res., 1, 1–124 Special Issue, 2003.
Young, J. R., Poulton, A. J., and Tyrrell, T.: Morphology of Emiliania huxleyi coccoliths on the North West European shelf – is there an influence of carbonate chemistry?, Biogeosciences Discuss., 11, 4531–4561, https://doi.org/10.5194/bgd-11-4531-2014, 2014.
Yu, Y. N., Breitbart, M., McNairnie, P., and Rohwer, F: FastGroupII: a web-based bioinformatics platform for analyses of large 16S rDNA libraries, BMC Bioinformatics, 7–57, 2006.
Altmetrics
Final-revised paper
Preprint