Articles | Volume 11, issue 23
https://doi.org/10.5194/bg-11-6873-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-6873-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
10 Dec 2014
Research article |
| 10 Dec 2014
Insights into biogeochemical cycling from a soil evolution model and long-term chronosequences
M. O. Johnson
CORRESPONDING AUTHOR
School of Geography, University of Leeds, Leeds, LS2 9JT, UK
M. Gloor
School of Geography, University of Leeds, Leeds, LS2 9JT, UK
M. J. Kirkby
School of Geography, University of Leeds, Leeds, LS2 9JT, UK
Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot, UK
Related authors
Anja Rammig, Jens Heinke, Florian Hofhansl, Hans Verbeeck, Timothy R. Baker, Bradley Christoffersen, Philippe Ciais, Hannes De Deurwaerder, Katrin Fleischer, David Galbraith, Matthieu Guimberteau, Andreas Huth, Michelle Johnson, Bart Krujit, Fanny Langerwisch, Patrick Meir, Phillip Papastefanou, Gilvan Sampaio, Kirsten Thonicke, Celso von Randow, Christian Zang, and Edna Rödig
Geosci. Model Dev., 11, 5203–5215, https://doi.org/10.5194/gmd-11-5203-2018, https://doi.org/10.5194/gmd-11-5203-2018, 2018
Short summary
Short summary
We propose a generic approach for a pixel-to-point comparison applicable for evaluation of models and remote-sensing products. We provide statistical measures accounting for the uncertainty in ecosystem variables. We demonstrate our approach by comparing simulated values of aboveground biomass, woody productivity and residence time of woody biomass from four dynamic global vegetation models (DGVMs) with measured inventory data from permanent plots in the Amazon rainforest.
Santiago Botía, Saqr Munassar, Thomas Koch, Danilo Custodio, Luana S. Basso, Shujiro Komiya, Jost V. Lavric, David Walter, Manuel Gloor, Giordane Martins, Stijn Naus, Gerbrand Koren, Ingrid Luijkx, Stijn Hantson, John B. Miller, Wouter Peters, Christian Rödenbeck, and Christoph Gerbig
EGUsphere, https://doi.org/10.5194/egusphere-2024-1735, https://doi.org/10.5194/egusphere-2024-1735, 2024
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
Short summary
Short summary
This study uses CO2 data from the Amazon Tall Tower Observatory and airborne profiles to estimate net carbon exchange. We found that the biogeographic Amazon is a net carbon sink, while the Cerrado and Caatinga biomes are net carbon sources, resulting in an overall neutral balance. To further reduce the uncertainty in our estimates we call for an expansion of the monitoring capacity, especially in the Amazon-Andes foothills.
Emily Dowd, Alistair J. Manning, Bryn Orth-Lashley, Marianne Girard, James France, Rebecca E. Fisher, Dave Lowry, Mathias Lanoisellé, Joseph R. Pitt, Kieran M. Stanley, Simon O'Doherty, Dickon Young, Glen Thistlethwaite, Martyn P. Chipperfield, Emanuel Gloor, and Chris Wilson
Atmos. Meas. Tech., 17, 1599–1615, https://doi.org/10.5194/amt-17-1599-2024, https://doi.org/10.5194/amt-17-1599-2024, 2024
Short summary
Short summary
We provide the first validation of the satellite-derived emission estimates using surface-based mobile greenhouse gas surveys of an active gas leak detected near Cheltenham, UK. GHGSat’s emission estimates broadly agree with the surface-based mobile survey and steps were taken to fix the leak, highlighting the importance of satellite data in identifying emissions and helping to reduce our human impact on climate change.
Luana S. Basso, Chris Wilson, Martyn P. Chipperfield, Graciela Tejada, Henrique L. G. Cassol, Egídio Arai, Mathew Williams, T. Luke Smallman, Wouter Peters, Stijn Naus, John B. Miller, and Manuel Gloor
Atmos. Chem. Phys., 23, 9685–9723, https://doi.org/10.5194/acp-23-9685-2023, https://doi.org/10.5194/acp-23-9685-2023, 2023
Short summary
Short summary
The Amazon’s carbon balance may have changed due to forest degradation, deforestation and warmer climate. We used an atmospheric model and atmospheric CO2 observations to quantify Amazonian carbon emissions (2010–2018). The region was a small carbon source to the atmosphere, mostly due to fire emissions. Forest uptake compensated for ~ 50 % of the fire emissions, meaning that the remaining forest is still a small carbon sink. We found no clear evidence of weakening carbon uptake over the period.
Emily Dowd, Chris Wilson, Martyn P. Chipperfield, Emanuel Gloor, Alistair Manning, and Ruth Doherty
Atmos. Chem. Phys., 23, 7363–7382, https://doi.org/10.5194/acp-23-7363-2023, https://doi.org/10.5194/acp-23-7363-2023, 2023
Short summary
Short summary
Surface observations of methane show that the seasonal cycle amplitude (SCA) of methane is decreasing in the northern high latitudes (NHLs) but increased globally (1995–2020). The NHL decrease is counterintuitive, as we expect the SCA to increase with increasing concentrations. We use a chemical transport model to investigate changes in SCA in the NHLs. We find well-mixed methane and changes in emissions from Canada, the Middle East, and Europe are the largest contributors to the SCA in NHLs.
Peter Joyce, Cristina Ruiz Villena, Yahui Huang, Alex Webb, Manuel Gloor, Fabien H. Wagner, Martyn P. Chipperfield, Rocío Barrio Guilló, Chris Wilson, and Hartmut Boesch
Atmos. Meas. Tech., 16, 2627–2640, https://doi.org/10.5194/amt-16-2627-2023, https://doi.org/10.5194/amt-16-2627-2023, 2023
Short summary
Short summary
Methane emissions are responsible for a lot of the warming caused by the greenhouse effect, much of which comes from a small number of point sources. We can identify methane point sources by analysing satellite data, but it requires a lot of time invested by experts and is prone to very high errors. Here, we produce a neural network that can automatically identify methane point sources and estimate the mass of methane that is being released per hour and are able to do so with far smaller errors.
Stijn Naus, Lucas G. Domingues, Maarten Krol, Ingrid T. Luijkx, Luciana V. Gatti, John B. Miller, Emanuel Gloor, Sourish Basu, Caio Correia, Gerbrand Koren, Helen M. Worden, Johannes Flemming, Gabrielle Pétron, and Wouter Peters
Atmos. Chem. Phys., 22, 14735–14750, https://doi.org/10.5194/acp-22-14735-2022, https://doi.org/10.5194/acp-22-14735-2022, 2022
Short summary
Short summary
We assimilate MOPITT CO satellite data in the TM5-4D-Var inverse modelling framework to estimate Amazon fire CO emissions for 2003–2018. We show that fire emissions have decreased over the analysis period, coincident with a decrease in deforestation rates. However, interannual variations in fire emissions are large, and they correlate strongly with soil moisture. Our results reveal an important role for robust, top-down fire CO emissions in quantifying and attributing Amazon fire intensity.
Chris Wilson, Martyn P. Chipperfield, Manuel Gloor, Robert J. Parker, Hartmut Boesch, Joey McNorton, Luciana V. Gatti, John B. Miller, Luana S. Basso, and Sarah A. Monks
Atmos. Chem. Phys., 21, 10643–10669, https://doi.org/10.5194/acp-21-10643-2021, https://doi.org/10.5194/acp-21-10643-2021, 2021
Short summary
Short summary
Methane (CH4) is an important greenhouse gas emitted from wetlands like those found in the basin of the Amazon River. Using an atmospheric model and observations from GOSAT, we quantified CH4 emissions from Amazonia during the previous decade. We found that the largest emissions came from a region in the eastern basin and that emissions there were rising faster than in other areas of South America. This finding was supported by CH4 observations made on aircraft within the basin.
Jessica C. A. Baker, Luis Garcia-Carreras, Manuel Gloor, John H. Marsham, Wolfgang Buermann, Humberto R. da Rocha, Antonio D. Nobre, Alessandro Carioca de Araujo, and Dominick V. Spracklen
Hydrol. Earth Syst. Sci., 25, 2279–2300, https://doi.org/10.5194/hess-25-2279-2021, https://doi.org/10.5194/hess-25-2279-2021, 2021
Short summary
Short summary
Evapotranspiration (ET) is a vital part of the Amazon water cycle, but it is difficult to measure over large areas. In this study, we compare spatial patterns, seasonality, and recent trends in Amazon ET from a water-budget analysis with estimates from satellites, reanalysis, and global climate models. We find large differences between products, showing that many widely used datasets and climate models may not provide a reliable representation of this crucial variable over the Amazon.
Keith J. Beven, Mike J. Kirkby, Jim E. Freer, and Rob Lamb
Hydrol. Earth Syst. Sci., 25, 527–549, https://doi.org/10.5194/hess-25-527-2021, https://doi.org/10.5194/hess-25-527-2021, 2021
Short summary
Short summary
The theory that forms the basis of TOPMODEL was first outlined by Mike Kirkby some 45 years ago. This paper recalls some of the early developments: the rejection of the first journal paper, the early days of digital terrain analysis, model calibration and validation, the various criticisms of the simplifying assumptions, and the relaxation of those assumptions in the dynamic forms of TOPMODEL, and it considers what we might do now with the benefit of hindsight.
Carlos Alberto Quesada, Claudia Paz, Erick Oblitas Mendoza, Oliver Lawrence Phillips, Gustavo Saiz, and Jon Lloyd
SOIL, 6, 53–88, https://doi.org/10.5194/soil-6-53-2020, https://doi.org/10.5194/soil-6-53-2020, 2020
Short summary
Short summary
Amazon soils hold as much carbon (C) as is contained in the vegetation. In this work we sampled soils across 8 different Amazonian countries to try to understand which soil properties control current Amazonian soil C concentrations. We confirm previous knowledge that highly developed soils hold C through clay content interactions but also show a previously unreported mechanism of soil C stabilization in the younger Amazonian soil types which hold C through aluminium organic matter interactions.
Amelie Baomalgré Bougma, Korodjouma Ouattara, Halidou Compaore, Hassan Bismarck Nacro, Caleb Melenya, Samuel Ayodele Mesele, Vincent Logah, Azeez Jamiu Oladipupo, Elmar Veenendaal, and Jonathan Lloyd
SOIL Discuss., https://doi.org/10.5194/soil-2019-87, https://doi.org/10.5194/soil-2019-87, 2020
Preprint withdrawn
Short summary
Short summary
To better understand the development of forest islands in west Africa, our study focused on soil aggregates stability of these patches across a precipitation transect. Soil samples were taken from 0 to 5 cm and 5 to 10 cm depths and aggregate fractions with diameters: > 500, 500–250 μm and 250–53 μm determined using the water sieving method. The results showed significant higher proportion of stable meso and macroaggregates in forest islands and natural savanna compared to agricultural soil.
Richard Coppell, Emanuel Gloor, and Joseph Holden
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2019-51, https://doi.org/10.5194/gmd-2019-51, 2019
Publication in GMD not foreseen
Short summary
Short summary
(1) We developed a new Sphagnum model for ecosystem exchange. (2) The model is implemented in TRIFFID which is part of the JULES land surface model. (3) Outputs compare well to empirical field data. (4) JULES can now better incorporate peatland-climate feedbacks.
Joe McNorton, Chris Wilson, Manuel Gloor, Rob J. Parker, Hartmut Boesch, Wuhu Feng, Ryan Hossaini, and Martyn P. Chipperfield
Atmos. Chem. Phys., 18, 18149–18168, https://doi.org/10.5194/acp-18-18149-2018, https://doi.org/10.5194/acp-18-18149-2018, 2018
Short summary
Short summary
Since 2007 atmospheric methane (CH4) has been unexpectedly increasing following a 6-year hiatus. We have used an atmospheric model to attribute regional sources and global sinks of CH4 using observations for the 2003–2015 period. Model results show the renewed growth is best explained by decreased atmospheric removal, decreased biomass burning emissions, and an increased energy sector (mainly from Africa–Middle East and Southern Asia–Oceania) and wetland emissions (mainly from northern Eurasia).
Anja Rammig, Jens Heinke, Florian Hofhansl, Hans Verbeeck, Timothy R. Baker, Bradley Christoffersen, Philippe Ciais, Hannes De Deurwaerder, Katrin Fleischer, David Galbraith, Matthieu Guimberteau, Andreas Huth, Michelle Johnson, Bart Krujit, Fanny Langerwisch, Patrick Meir, Phillip Papastefanou, Gilvan Sampaio, Kirsten Thonicke, Celso von Randow, Christian Zang, and Edna Rödig
Geosci. Model Dev., 11, 5203–5215, https://doi.org/10.5194/gmd-11-5203-2018, https://doi.org/10.5194/gmd-11-5203-2018, 2018
Short summary
Short summary
We propose a generic approach for a pixel-to-point comparison applicable for evaluation of models and remote-sensing products. We provide statistical measures accounting for the uncertainty in ecosystem variables. We demonstrate our approach by comparing simulated values of aboveground biomass, woody productivity and residence time of woody biomass from four dynamic global vegetation models (DGVMs) with measured inventory data from permanent plots in the Amazon rainforest.
Paul I. Palmer, Simon O'Doherty, Grant Allen, Keith Bower, Hartmut Bösch, Martyn P. Chipperfield, Sarah Connors, Sandip Dhomse, Liang Feng, Douglas P. Finch, Martin W. Gallagher, Emanuel Gloor, Siegfried Gonzi, Neil R. P. Harris, Carole Helfter, Neil Humpage, Brian Kerridge, Diane Knappett, Roderic L. Jones, Michael Le Breton, Mark F. Lunt, Alistair J. Manning, Stephan Matthiesen, Jennifer B. A. Muller, Neil Mullinger, Eiko Nemitz, Sebastian O'Shea, Robert J. Parker, Carl J. Percival, Joseph Pitt, Stuart N. Riddick, Matthew Rigby, Harjinder Sembhi, Richard Siddans, Robert L. Skelton, Paul Smith, Hannah Sonderfeld, Kieran Stanley, Ann R. Stavert, Angelina Wenger, Emily White, Christopher Wilson, and Dickon Young
Atmos. Chem. Phys., 18, 11753–11777, https://doi.org/10.5194/acp-18-11753-2018, https://doi.org/10.5194/acp-18-11753-2018, 2018
Short summary
Short summary
This paper provides an overview of the Greenhouse gAs Uk and Global Emissions (GAUGE) experiment. GAUGE was designed to quantify nationwide GHG emissions of the UK, bringing together measurements and atmospheric transport models. This novel experiment is the first of its kind. We anticipate it will inform the blueprint for countries that are building a measurement infrastructure in preparation for global stocktakes, which are a key part of the Paris Agreement.
Demerval S. Moreira, Karla M. Longo, Saulo R. Freitas, Marcia A. Yamasoe, Lina M. Mercado, Nilton E. Rosário, Emauel Gloor, Rosane S. M. Viana, John B. Miller, Luciana V. Gatti, Kenia T. Wiedemann, Lucas K. G. Domingues, and Caio C. S. Correia
Atmos. Chem. Phys., 17, 14785–14810, https://doi.org/10.5194/acp-17-14785-2017, https://doi.org/10.5194/acp-17-14785-2017, 2017
Short summary
Short summary
Fire in the Amazon forest produces a large amount of smoke that is released into the atmosphere and covers a large portion of South America for about 3 months each year. The smoke affects the energy and CO2 budgets. Using a numerical atmospheric model, we demonstrated that the smoke changes the forest from a source to a sink of CO2 to the atmosphere. The smoke ultimately acts to at least partially compensate for the forest carbon lost due to fire emissions.
Liang Feng, Paul I. Palmer, Hartmut Bösch, Robert J. Parker, Alex J. Webb, Caio S. C. Correia, Nicholas M. Deutscher, Lucas G. Domingues, Dietrich G. Feist, Luciana V. Gatti, Emanuel Gloor, Frank Hase, Rigel Kivi, Yi Liu, John B. Miller, Isamu Morino, Ralf Sussmann, Kimberly Strong, Osamu Uchino, Jing Wang, and Andreas Zahn
Atmos. Chem. Phys., 17, 4781–4797, https://doi.org/10.5194/acp-17-4781-2017, https://doi.org/10.5194/acp-17-4781-2017, 2017
Short summary
Short summary
We use the GEOS-Chem global 3-D model of atmospheric chemistry and transport and an ensemble Kalman filter to simultaneously infer regional fluxes of methane (CH4) and carbon dioxide (CO2) directly from GOSAT retrievals of XCH4:XCO2, using sparse ground-based CH4 and CO2 mole fraction data to anchor the ratio. Our results show that assimilation of GOSAT data significantly reduced the posterior uncertainty and changed the a priori spatial distribution of CH4 emissions.
M. J. Kirkby
SOIL, 2, 631–645, https://doi.org/10.5194/soil-2-631-2016, https://doi.org/10.5194/soil-2-631-2016, 2016
Short summary
Short summary
The review paper surveys the state of the art with respect to water in the critical zone, taking a broad view that concentrates on the global range of natural soils, identifying some areas of currently active research.
Bradley O. Christoffersen, Manuel Gloor, Sophie Fauset, Nikolaos M. Fyllas, David R. Galbraith, Timothy R. Baker, Bart Kruijt, Lucy Rowland, Rosie A. Fisher, Oliver J. Binks, Sanna Sevanto, Chonggang Xu, Steven Jansen, Brendan Choat, Maurizio Mencuccini, Nate G. McDowell, and Patrick Meir
Geosci. Model Dev., 9, 4227–4255, https://doi.org/10.5194/gmd-9-4227-2016, https://doi.org/10.5194/gmd-9-4227-2016, 2016
Short summary
Short summary
We developed a plant hydraulics model for tropical forests based on established plant physiological theory, and parameterized it by conducting a pantropical hydraulic trait survey. We show that a substantial amount of trait diversity can be represented in the model by a reduced set of trait dimensions. The fully parameterized model is able capture tree-level variation in water status and improves simulations of total ecosystem transpiration, showing how to incorporate hydraulic traits in models.
M. N. Deeter, S. Martínez-Alonso, L. V. Gatti, M. Gloor, J. B. Miller, L. G. Domingues, and C. S. C. Correia
Atmos. Meas. Tech., 9, 3999–4012, https://doi.org/10.5194/amt-9-3999-2016, https://doi.org/10.5194/amt-9-3999-2016, 2016
Short summary
Short summary
Satellite methods allow biomass burning emissions to be accurately quantified with high spatial and temporal resolution. With that ultimate goal, we analyze satellite retrievals of carbon monoxide from the MOPITT instrument over the Amazon Basin. Validation results for four Amazonian sites indicate a significant negative bias in retrieved lower-tropospheric CO concentrations. The interannual variability of biomass burning emissions from 2000 to 2015 is also studied using the MOPITT record.
Sudhanshu Pandey, Sander Houweling, Maarten Krol, Ilse Aben, Frédéric Chevallier, Edward J. Dlugokencky, Luciana V. Gatti, Emanuel Gloor, John B. Miller, Rob Detmers, Toshinobu Machida, and Thomas Röckmann
Atmos. Chem. Phys., 16, 5043–5062, https://doi.org/10.5194/acp-16-5043-2016, https://doi.org/10.5194/acp-16-5043-2016, 2016
Short summary
Short summary
This study investigates the constraint provided by measurements of Xratio (XCH4/XCO2) from space on surface fluxes of CH4 and CO2. We apply the ratio inversion method described in Pandey et al. (2015) to Xratio retrievals from the GOSAT with the TM5-4DVAR inverse modeling system, to constrain the surface fluxes of CH4 and CO2 for 2009 and 2010. The results are compared to proxy CH4 inversions using model-derived-XCO2 mixing ratios from CarbonTracker and MACC.
J. Lloyd and E. M. Veenendaal
Biogeosciences Discuss., https://doi.org/10.5194/bg-2015-660, https://doi.org/10.5194/bg-2015-660, 2016
Revised manuscript not accepted
Short summary
Short summary
Fire has been proposed as the key driver of tropical forest and savanna biome distributions with many tropical ecologists believing that these biomes constitute alternate stable states (ASS). Contributing to an ongoing debate as evidence supporting the existence of ASS in the terrestrial tropics, we find all current arguments presented as supporting the existence of ASS to be flawed, with five specific fallacious argumentation types identified.
J. Lloyd, T. F. Domingues, F. Schrodt, F. Y. Ishida, T. R. Feldpausch, G. Saiz, C. A. Quesada, M. Schwarz, M. Torello-Raventos, M. Gilpin, B. S. Marimon, B. H. Marimon-Junior, J. A. Ratter, J. Grace, G. B. Nardoto, E. Veenendaal, L. Arroyo, D. Villarroel, T. J. Killeen, M. Steininger, and O. L. Phillips
Biogeosciences, 12, 6529–6571, https://doi.org/10.5194/bg-12-6529-2015, https://doi.org/10.5194/bg-12-6529-2015, 2015
Short summary
Short summary
Across tropical South America, forest soils are typically of a higher cation status than their savanna equivalents with soil exchangeable potassium a key soil nutrient differentiating these two vegetation types. Differences in soil water storage capacity are also important – interacting with both potassium availability and precipitation regimes in a relatively complex manner.
G. Saiz, M. Bird, C. Wurster, C. A. Quesada, P. Ascough, T. Domingues, F. Schrodt, M. Schwarz, T. R. Feldpausch, E. Veenendaal, G. Djagbletey, G. Jacobsen, F. Hien, H. Compaore, A. Diallo, and J. Lloyd
Biogeosciences, 12, 5041–5059, https://doi.org/10.5194/bg-12-5041-2015, https://doi.org/10.5194/bg-12-5041-2015, 2015
Short summary
Short summary
We demonstrate and explain differential patterns in SOM dynamics in C3/C4 mixed ecosystems at various spatial scales across contrasting climate and soils. This study shows that the interdependence between biotic and abiotic factors ultimately determines whether SOM dynamics of C3- and C4-derived vegetation are at variance in ecosystems where both vegetation types coexist. The results also highlight the far-reaching implications that vegetation thickening may have for the stability of deep SOM.
E. M. Veenendaal, M. Torello-Raventos, T. R. Feldpausch, T. F. Domingues, F. Gerard, F. Schrodt, G. Saiz, C. A. Quesada, G. Djagbletey, A. Ford, J. Kemp, B. S. Marimon, B. H. Marimon-Junior, E. Lenza, J. A. Ratter, L. Maracahipes, D. Sasaki, B. Sonké, L. Zapfack, D. Villarroel, M. Schwarz, F. Yoko Ishida, M. Gilpin, G. B. Nardoto, K. Affum-Baffoe, L. Arroyo, K. Bloomfield, G. Ceca, H. Compaore, K. Davies, A. Diallo, N. M. Fyllas, J. Gignoux, F. Hien, M. Johnson, E. Mougin, P. Hiernaux, T. Killeen, D. Metcalfe, H. S. Miranda, M. Steininger, K. Sykora, M. I. Bird, J. Grace, S. Lewis, O. L. Phillips, and J. Lloyd
Biogeosciences, 12, 2927–2951, https://doi.org/10.5194/bg-12-2927-2015, https://doi.org/10.5194/bg-12-2927-2015, 2015
Short summary
Short summary
When nearby forest and savanna stands are compared, they are not as structurally different as first seems. Moreover, savanna-forest transition zones typically occur at higher rainfall for South America than for Africa but with coexistence confined to a well-defined edaphic-climate envelope. With interacting soil cation-soil water storage–precipitations effects on canopy cover also observed we argue that both soils and climate influence the location of the two major tropical vegetation types.
S. Sitch, P. Friedlingstein, N. Gruber, S. D. Jones, G. Murray-Tortarolo, A. Ahlström, S. C. Doney, H. Graven, C. Heinze, C. Huntingford, S. Levis, P. E. Levy, M. Lomas, B. Poulter, N. Viovy, S. Zaehle, N. Zeng, A. Arneth, G. Bonan, L. Bopp, J. G. Canadell, F. Chevallier, P. Ciais, R. Ellis, M. Gloor, P. Peylin, S. L. Piao, C. Le Quéré, B. Smith, Z. Zhu, and R. Myneni
Biogeosciences, 12, 653–679, https://doi.org/10.5194/bg-12-653-2015, https://doi.org/10.5194/bg-12-653-2015, 2015
K. J. Bloomfield, T. F. Domingues, G. Saiz, M. I. Bird, D. M. Crayn, A. Ford, D. J. Metcalfe, G. D. Farquhar, and J. Lloyd
Biogeosciences, 11, 7331–7347, https://doi.org/10.5194/bg-11-7331-2014, https://doi.org/10.5194/bg-11-7331-2014, 2014
C. Wilson, M. P. Chipperfield, M. Gloor, and F. Chevallier
Geosci. Model Dev., 7, 2485–2500, https://doi.org/10.5194/gmd-7-2485-2014, https://doi.org/10.5194/gmd-7-2485-2014, 2014
N. M. Fyllas, E. Gloor, L. M. Mercado, S. Sitch, C. A. Quesada, T. F. Domingues, D. R. Galbraith, A. Torre-Lezama, E. Vilanova, H. Ramírez-Angulo, N. Higuchi, D. A. Neill, M. Silveira, L. Ferreira, G. A. Aymard C., Y. Malhi, O. L. Phillips, and J. Lloyd
Geosci. Model Dev., 7, 1251–1269, https://doi.org/10.5194/gmd-7-1251-2014, https://doi.org/10.5194/gmd-7-1251-2014, 2014
M. R. Raupach, M. Gloor, J. L. Sarmiento, J. G. Canadell, T. L. Frölicher, T. Gasser, R. A. Houghton, C. Le Quéré, and C. M. Trudinger
Biogeosciences, 11, 3453–3475, https://doi.org/10.5194/bg-11-3453-2014, https://doi.org/10.5194/bg-11-3453-2014, 2014
R. Locatelli, P. Bousquet, F. Chevallier, A. Fortems-Cheney, S. Szopa, M. Saunois, A. Agusti-Panareda, D. Bergmann, H. Bian, P. Cameron-Smith, M. P. Chipperfield, E. Gloor, S. Houweling, S. R. Kawa, M. Krol, P. K. Patra, R. G. Prinn, M. Rigby, R. Saito, and C. Wilson
Atmos. Chem. Phys., 13, 9917–9937, https://doi.org/10.5194/acp-13-9917-2013, https://doi.org/10.5194/acp-13-9917-2013, 2013
D. S. Moreira, S. R. Freitas, J. P. Bonatti, L. M. Mercado, N. M. É. Rosário, K. M. Longo, J. B. Miller, M. Gloor, and L. V. Gatti
Geosci. Model Dev., 6, 1243–1259, https://doi.org/10.5194/gmd-6-1243-2013, https://doi.org/10.5194/gmd-6-1243-2013, 2013
D. A. Belikov, S. Maksyutov, M. Krol, A. Fraser, M. Rigby, H. Bian, A. Agusti-Panareda, D. Bergmann, P. Bousquet, P. Cameron-Smith, M. P. Chipperfield, A. Fortems-Cheiney, E. Gloor, K. Haynes, P. Hess, S. Houweling, S. R. Kawa, R. M. Law, Z. Loh, L. Meng, P. I. Palmer, P. K. Patra, R. G. Prinn, R. Saito, and C. Wilson
Atmos. Chem. Phys., 13, 1093–1114, https://doi.org/10.5194/acp-13-1093-2013, https://doi.org/10.5194/acp-13-1093-2013, 2013
Related subject area
Biogeochemistry: Modelling, Terrestrial
Integration of tree hydraulic processes and functional impairment to capture the drought resilience of a semiarid pine forest
The effect of temperature on photosystem II efficiency across plant functional types and climate
Modeling microbial carbon fluxes and stocks in global soils from 1901 to 2016
Elevated atmospheric CO2 concentration and vegetation structural changes contributed to gross primary productivity increase more than climate and forest cover changes in subtropical forests of China
Non-steady-state stomatal conductance modeling and its implications: from leaf to ecosystem
Modelled forest ecosystem carbon–nitrogen dynamics with integrated mycorrhizal processes under elevated CO2
A chemical kinetics theory for interpreting the non-monotonic temperature dependence of enzymatic reactions
Using Free Air CO2 Enrichment data to constrain land surface model projections of the terrestrial carbon cycle
Multiscale assessment of North American terrestrial carbon balance
Simulating net ecosystem exchange under seasonal snow cover at an Arctic tundra site
When and why microbial-explicit soil organic carbon models can be unstable
Spatial biases reduce the ability of Earth system models to simulate soil heterotrophic respiration fluxes
Tropical dry forest response to nutrient fertilization: a model validation and sensitivity analysis
Connecting competitor, stress-tolerator and ruderal (CSR) theory and Lund Potsdam Jena managed Land 5 (LPJmL 5) to assess the role of environmental conditions, management and functional diversity for grassland ecosystem functions
Optimizing the terrestrial ecosystem gross primary productivity using carbonyl sulfide (COS) within a “two-leaf” modeling framework
A global fuel characteristic model and dataset for wildfire prediction
Can models adequately reflect how long-term nitrogen enrichment alters the forest soil carbon cycle?
Temporal variability of observed and simulated gross primary productivity, modulated by vegetation state and hydrometeorological drivers
The impacts of modelling prescribed vs. dynamic land cover in a high CO2 future scenario – greening of the Arctic and Amazonian dieback
Empirical upscaling of OzFlux eddy covariance for high-resolution monitoring of terrestrial carbon uptake in Australia
A modeling approach to investigate drivers, variability and uncertainties in O2 fluxes and O2 : CO2 exchange ratios in a temperate forest
Modeling coupled nitrification–denitrification in soil with an organic hotspot
A new method for estimating carbon dioxide emissions from drained peatland forest soils for the greenhouse gas inventory of Finland
Wood microclimate as a predictor of carbon dioxide fluxes from deadwood in tropical Australia
Enabling a process-oriented hydro-biogeochemical model to simulate soil erosion and nutrient losses
A robust DayCent model calibration to assess the potential impact of integrated soil fertility management on maize yields, soil carbon stocks and greenhouse gas emissions in Kenya
Potassium limitation of forest productivity – Part 1: A mechanistic model simulating the effects of potassium availability on canopy carbon and water fluxes in tropical eucalypt stands
Potassium limitation of forest productivity – Part 2: CASTANEA-MAESPA-K shows a reduction in photosynthesis rather than a stoichiometric limitation of tissue formation
Global evaluation of terrestrial biogeochemistry in the Energy Exascale Earth System Model (E3SM) and the role of the phosphorus cycle in the historical terrestrial carbon balance
Assessing carbon storage capacity and saturation across six central US grasslands using data–model integration
Optimizing the carbonic anhydrase temperature response and stomatal conductance of carbonyl sulfide leaf uptake in the Simple Biosphere model (SiB4)
Exploring environmental and physiological drivers of the annual carbon budget of biocrusts from various climatic zones with a mechanistic data-driven model
Improved process representation of leaf phenology significantly shifts climate sensitivity of ecosystem carbon balance
Mapping of ESA's Climate Change Initiative land cover data to plant functional types for use in the CLASSIC land model
Exploring the impacts of unprecedented climate extremes on forest ecosystems: hypotheses to guide modeling and experimental studies
Effect of droughts and climate change on future soil weathering rates in Sweden
Information content in time series of litter decomposition studies and the transit time of litter in arid lands
Long-term changes of nitrogen leaching and the contributions of terrestrial nutrient sources to lake eutrophication dynamics on the Yangtze Plain of China
Towards an ensemble-based evaluation of land surface models in light of uncertain forcings and observations
Effect of land-use legacy on the future carbon sink for the conterminous US
Peatlands and their carbon dynamics in northern high latitudes from 1990 to 2300: a process-based biogeochemistry model analysis
Improved representation of phosphorus exchange on soil mineral surfaces reduces estimates of phosphorus limitation in temperate forest ecosystems
A coupled ground heat flux–surface energy balance model of evaporation using thermal remote sensing observations
Modeling nitrous oxide emissions from agricultural soil incubation experiments using CoupModel
Local-scale evaluation of the simulated interactions between energy, water and vegetation in ISBA, ORCHIDEE and a diagnostic model
Implementation and initial calibration of carbon-13 soil organic matter decomposition in the Yasso model
The carbon budget of the managed grasslands of Great Britain – informed by earth observations
Accounting for non-rainfall moisture and temperature improves litter decay model performance in a fog-dominated dryland system
Ideas and perspectives: Allocation of carbon from net primary production in models is inconsistent with observations of the age of respired carbon
Exploring the role of bedrock representation on plant transpiration response during dry periods at four forested sites in Europe
Daniel Nadal-Sala, Rüdiger Grote, David Kraus, Uri Hochberg, Tamir Klein, Yael Wagner, Fedor Tatarinov, Dan Yakir, and Nadine K. Ruehr
Biogeosciences, 21, 2973–2994, https://doi.org/10.5194/bg-21-2973-2024, https://doi.org/10.5194/bg-21-2973-2024, 2024
Short summary
Short summary
A hydraulic model approach is presented that can be added to any physiologically based ecosystem model. Simulated plant water potential triggers stomatal closure, photosynthesis decline, root–soil resistance increases, and sapwood and foliage senescence. The model has been evaluated at an extremely dry site stocked with Aleppo pine and was able to represent gas exchange, soil water content, and plant water potential. The model also responded realistically regarding leaf senescence.
Patrick Neri, Lianhong Gu, and Yang Song
Biogeosciences, 21, 2731–2758, https://doi.org/10.5194/bg-21-2731-2024, https://doi.org/10.5194/bg-21-2731-2024, 2024
Short summary
Short summary
A first-of-its-kind global-scale model of temperature resilience and tolerance of photosystem II maximum quantum yield informs how plants maintain their efficiency of converting light energy to chemical energy for photosynthesis under temperature changes. Our finding explores this variation across plant functional types and habitat climatology, highlighting diverse temperature response strategies and a method to improve global-scale photosynthesis modeling under climate change.
Liyuan He, Jorge L. Mazza Rodrigues, Melanie A. Mayes, Chun-Ta Lai, David A. Lipson, and Xiaofeng Xu
Biogeosciences, 21, 2313–2333, https://doi.org/10.5194/bg-21-2313-2024, https://doi.org/10.5194/bg-21-2313-2024, 2024
Short summary
Short summary
Soil microbes are the driving engine for biogeochemical cycles of carbon and nutrients. This study applies a microbial-explicit model to quantify bacteria and fungal biomass carbon in soils from 1901 to 2016. Results showed substantial increases in bacterial and fungal biomass carbon over the past century, jointly influenced by vegetation growth and soil temperature and moisture. This pioneering century-long estimation offers crucial insights into soil microbial roles in global carbon cycling.
Tao Chen, Félicien Meunier, Marc Peaucelle, Guoping Tang, Ye Yuan, and Hans Verbeeck
Biogeosciences, 21, 2253–2272, https://doi.org/10.5194/bg-21-2253-2024, https://doi.org/10.5194/bg-21-2253-2024, 2024
Short summary
Short summary
Chinese subtropical forest ecosystems are an extremely important component of global forest ecosystems and hence crucial for the global carbon cycle and regional climate change. However, there is still great uncertainty in the relationship between subtropical forest carbon sequestration and its drivers. We provide first quantitative estimates of the individual and interactive effects of different drivers on the gross primary productivity changes of various subtropical forest types in China.
Ke Liu, Yujie Wang, Troy S. Magney, and Christian Frankenberg
Biogeosciences, 21, 1501–1516, https://doi.org/10.5194/bg-21-1501-2024, https://doi.org/10.5194/bg-21-1501-2024, 2024
Short summary
Short summary
Stomata are pores on leaves that regulate gas exchange between plants and the atmosphere. Existing land models unrealistically assume stomata can jump between steady states when the environment changes. We implemented dynamic modeling to predict gradual stomatal responses at different scales. Results suggested that considering this effect on plant behavior patterns in diurnal cycles was important. Our framework also simplified simulations and can contribute to further efficiency improvements.
Melanie A. Thurner, Silvia Caldararu, Jan Engel, Anja Rammig, and Sönke Zaehle
Biogeosciences, 21, 1391–1410, https://doi.org/10.5194/bg-21-1391-2024, https://doi.org/10.5194/bg-21-1391-2024, 2024
Short summary
Short summary
Due to their crucial role in terrestrial ecosystems, we implemented mycorrhizal fungi into the QUINCY terrestrial biosphere model. Fungi interact with mineral and organic soil to support plant N uptake and, thus, plant growth. Our results suggest that the effect of mycorrhizal interactions on simulated ecosystem dynamics is minor under constant environmental conditions but necessary to reproduce and understand observed patterns under changing conditions, such as rising atmospheric CO2.
Jinyun Tang and William J. Riley
Biogeosciences, 21, 1061–1070, https://doi.org/10.5194/bg-21-1061-2024, https://doi.org/10.5194/bg-21-1061-2024, 2024
Short summary
Short summary
A chemical kinetics theory is proposed to explain the non-monotonic relationship between temperature and biochemical rates. It incorporates the observed thermally reversible enzyme denaturation that is ensured by the ceaseless thermal motion of molecules and ions in an enzyme solution and three well-established theories: (1) law of mass action, (2) diffusion-limited chemical reaction theory, and (3) transition state theory.
Nina Raoult, Louis-Axel Edouard-Rambaut, Nicolas Vuichard, Vladislav Bastrikov, Anne Sofie Lansø, Bertrand Guenet, and Philippe Peylin
Biogeosciences, 21, 1017–1036, https://doi.org/10.5194/bg-21-1017-2024, https://doi.org/10.5194/bg-21-1017-2024, 2024
Short summary
Short summary
Observations are used to reduce uncertainty in land surface models (LSMs) by optimising poorly constraining parameters. However, optimising against current conditions does not necessarily ensure that the parameters treated as invariant will be robust in a changing climate. Manipulation experiments offer us a unique chance to optimise our models under different (here atmospheric CO2) conditions. By using these data in optimisations, we gain confidence in the future projections of LSMs.
Kelsey T. Foster, Wu Sun, Yoichi P. Shiga, Jiafu Mao, and Anna M. Michalak
Biogeosciences, 21, 869–891, https://doi.org/10.5194/bg-21-869-2024, https://doi.org/10.5194/bg-21-869-2024, 2024
Short summary
Short summary
Assessing agreement between bottom-up and top-down methods across spatial scales can provide insights into the relationship between ensemble spread (difference across models) and model accuracy (difference between model estimates and reality). We find that ensemble spread is unlikely to be a good indicator of actual uncertainty in the North American carbon balance. However, models that are consistent with atmospheric constraints show stronger agreement between top-down and bottom-up estimates.
Victoria R. Dutch, Nick Rutter, Leanne Wake, Oliver Sonnentag, Gabriel Hould Gosselin, Melody Sandells, Chris Derksen, Branden Walker, Gesa Meyer, Richard Essery, Richard Kelly, Phillip Marsh, Julia Boike, and Matteo Detto
Biogeosciences, 21, 825–841, https://doi.org/10.5194/bg-21-825-2024, https://doi.org/10.5194/bg-21-825-2024, 2024
Short summary
Short summary
We undertake a sensitivity study of three different parameters on the simulation of net ecosystem exchange (NEE) during the snow-covered non-growing season at an Arctic tundra site. Simulations are compared to eddy covariance measurements, with near-zero NEE simulated despite observed CO2 release. We then consider how to parameterise the model better in Arctic tundra environments on both sub-seasonal timescales and cumulatively throughout the snow-covered non-growing season.
Erik Schwarz, Samia Ghersheen, Salim Belyazid, and Stefano Manzoni
EGUsphere, https://doi.org/10.5194/egusphere-2024-348, https://doi.org/10.5194/egusphere-2024-348, 2024
Short summary
Short summary
Occurrence of unstable equilibrium points (EPs) could impede applicability of microbial-explicit soil organic carbon models. For archetypal model versions we identified when instability can occur and describe mathematical conditions to avoid such unstable EPs. We discuss implications for further model development, highlighting the important role of considering basic ecological principles to ensure biologically meaningful models.
Bertrand Guenet, Jérémie Orliac, Lauric Cécillon, Olivier Torres, Laura Sereni, Philip A. Martin, Pierre Barré, and Laurent Bopp
Biogeosciences, 21, 657–669, https://doi.org/10.5194/bg-21-657-2024, https://doi.org/10.5194/bg-21-657-2024, 2024
Short summary
Short summary
Heterotrophic respiration fluxes are a major flux between surfaces and the atmosphere, but Earth system models do not yet represent them correctly. Here we benchmarked Earth system models against observation-based products, and we identified the important mechanisms that need to be improved in the next-generation Earth system models.
Shuyue Li, Bonnie Waring, Jennifer Powers, and David Medvigy
Biogeosciences, 21, 455–471, https://doi.org/10.5194/bg-21-455-2024, https://doi.org/10.5194/bg-21-455-2024, 2024
Short summary
Short summary
We used an ecosystem model to simulate primary production of a tropical forest subjected to 3 years of nutrient fertilization. Simulations parameterized such that relative allocation to fine roots increased with increasing soil phosphorus had leaf, wood, and fine root production consistent with observations. However, these simulations seemed to over-allocate to fine roots on multidecadal timescales, affecting aboveground biomass. Additional observations across timescales would benefit models.
Stephen Björn Wirth, Arne Poyda, Friedhelm Taube, Britta Tietjen, Christoph Müller, Kirsten Thonicke, Anja Linstädter, Kai Behn, Sibyll Schaphoff, Werner von Bloh, and Susanne Rolinski
Biogeosciences, 21, 381–410, https://doi.org/10.5194/bg-21-381-2024, https://doi.org/10.5194/bg-21-381-2024, 2024
Short summary
Short summary
In dynamic global vegetation models (DGVMs), the role of functional diversity in forage supply and soil organic carbon storage of grasslands is not explicitly taken into account. We introduced functional diversity into the Lund Potsdam Jena managed Land (LPJmL) DGVM using CSR theory. The new model reproduced well-known trade-offs between plant traits and can be used to quantify the role of functional diversity in climate change mitigation using different functional diversity scenarios.
Huajie Zhu, Xiuli Xing, Mousong Wu, Weimin Ju, and Fei Jiang
EGUsphere, https://doi.org/10.5194/egusphere-2023-3032, https://doi.org/10.5194/egusphere-2023-3032, 2024
Short summary
Short summary
In this study, ecosystem COS fluxes data were employed to optimize GPP estimation across various ecosystems with the Boreal Ecosystem Productivity Simulator (BEPS), which was further developed for simulating the leaf COS uptake under its state-of-the-art ‘two-leaf’ framework. our results showcased the efficacy of COS in enhancing model prediction and reducing prediction uncertainty of GPP, and deepened insights into the sensitivity, identifiability, and interactions of parameters related to COS.
Joe R. McNorton and Francesca Di Giuseppe
Biogeosciences, 21, 279–300, https://doi.org/10.5194/bg-21-279-2024, https://doi.org/10.5194/bg-21-279-2024, 2024
Short summary
Short summary
Wildfires have wide-ranging consequences for local communities, air quality and ecosystems. Vegetation amount and moisture state are key components to forecast wildfires. We developed a combined model and satellite framework to characterise vegetation, including the type of fuel, whether it is alive or dead, and its moisture content. The daily data is at high resolution globally (~9 km). Our characteristics correlate with active fire data and can inform fire danger and spread modelling efforts.
Brooke A. Eastman, William R. Wieder, Melannie D. Hartman, Edward R. Brzostek, and William T. Peterjohn
Biogeosciences, 21, 201–221, https://doi.org/10.5194/bg-21-201-2024, https://doi.org/10.5194/bg-21-201-2024, 2024
Short summary
Short summary
We compared soil model performance to data from a long-term nitrogen addition experiment in a forested ecosystem. We found that in order for soil carbon models to accurately predict future forest carbon sequestration, two key processes must respond dynamically to nitrogen availability: (1) plant allocation of carbon to wood versus roots and (2) rates of soil organic matter decomposition. Long-term experiments can help improve our predictions of the land carbon sink and its climate impact.
Jan De Pue, Sebastian Wieneke, Ana Bastos, José Miguel Barrios, Liyang Liu, Philippe Ciais, Alirio Arboleda, Rafiq Hamdi, Maral Maleki, Fabienne Maignan, Françoise Gellens-Meulenberghs, Ivan Janssens, and Manuela Balzarolo
Biogeosciences, 20, 4795–4818, https://doi.org/10.5194/bg-20-4795-2023, https://doi.org/10.5194/bg-20-4795-2023, 2023
Short summary
Short summary
The gross primary production (GPP) of the terrestrial biosphere is a key source of variability in the global carbon cycle. To estimate this flux, models can rely on remote sensing data (RS-driven), meteorological data (meteo-driven) or a combination of both (hybrid). An intercomparison of 11 models demonstrated that RS-driven models lack the sensitivity to short-term anomalies. Conversely, the simulation of soil moisture dynamics and stress response remains a challenge in meteo-driven models.
Sian Kou-Giesbrecht, Vivek Arora, Christian Seiler, and Libo Wang
EGUsphere, https://doi.org/10.5194/egusphere-2023-2711, https://doi.org/10.5194/egusphere-2023-2711, 2023
Short summary
Short summary
Terrestrial biosphere models can either prescribe the geographical distribution of biomes or simulate them dynamically, capturing climate change-driven biome shifts. We isolate and examine the differences between these different land cover implementations. We find that the simulated terrestrial carbon sink at the end of the 21st century is twice as large in simulations with dynamic land cover than in simulations with prescribed land cover due to important range shifts in the Arctic and Amazon.
Chad A. Burton, Luigi J. Renzullo, Sami W. Rifai, and Albert I. J. M. Van Dijk
Biogeosciences, 20, 4109–4134, https://doi.org/10.5194/bg-20-4109-2023, https://doi.org/10.5194/bg-20-4109-2023, 2023
Short summary
Short summary
Australia's land-based ecosystems play a critical role in controlling the variability in the global land carbon sink. However, uncertainties in the methods used for quantifying carbon fluxes limit our understanding. We develop high-resolution estimates of Australia's land carbon fluxes using machine learning methods and find that Australia is, on average, a stronger carbon sink than previously thought and that the seasonal dynamics of the fluxes differ from those described by other methods.
Yuan Yan, Anne Klosterhalfen, Fernando Moyano, Matthias Cuntz, Andrew C. Manning, and Alexander Knohl
Biogeosciences, 20, 4087–4107, https://doi.org/10.5194/bg-20-4087-2023, https://doi.org/10.5194/bg-20-4087-2023, 2023
Short summary
Short summary
A better understanding of O2 fluxes, their exchange ratios with CO2 and their interrelations with environmental conditions would provide further insights into biogeochemical ecosystem processes. We, therefore, used the multilayer canopy model CANVEG to simulate and analyze the flux exchange for our forest study site for 2012–2016. Based on these simulations, we further successfully tested the application of various micrometeorological methods and the prospects of real O2 flux measurements.
Jie Zhang, Elisabeth Larsen Kolstad, Wenxin Zhang, Iris Vogeler, and Søren O. Petersen
Biogeosciences, 20, 3895–3917, https://doi.org/10.5194/bg-20-3895-2023, https://doi.org/10.5194/bg-20-3895-2023, 2023
Short summary
Short summary
Manure application to agricultural land often results in large and variable N2O emissions. We propose a model with a parsimonious structure to investigate N transformations around such N2O hotspots. The model allows for new detailed insights into the interactions between transport and microbial activities regarding N2O emissions in heterogeneous soil environments. It highlights the importance of solute diffusion to N2O emissions from such hotspots which are often ignored by process-based models.
Jukka Alm, Antti Wall, Jukka-Pekka Myllykangas, Paavo Ojanen, Juha Heikkinen, Helena M. Henttonen, Raija Laiho, Kari Minkkinen, Tarja Tuomainen, and Juha Mikola
Biogeosciences, 20, 3827–3855, https://doi.org/10.5194/bg-20-3827-2023, https://doi.org/10.5194/bg-20-3827-2023, 2023
Short summary
Short summary
In Finland peatlands cover one-third of land area. For half of those, with 4.3 Mha being drained for forestry, Finland reports sinks and sources of greenhouse gases in forest lands on organic soils following its UNFCCC commitment. We describe a new method for compiling soil CO2 balance that follows changes in tree volume, tree harvests and temperature. An increasing trend of emissions from 1.4 to 7.9 Mt CO2 was calculated for drained peatland forest soils in Finland for 1990–2021.
Elizabeth S. Duan, Luciana Chavez Rodriguez, Nicole Hemming-Schroeder, Baptiste Wijas, Habacuc Flores-Moreno, Alexander W. Cheesman, Lucas A. Cernusak, Michael J. Liddell, Paul Eggleton, Amy E. Zanne, and Steven D. Allison
EGUsphere, https://doi.org/10.5194/egusphere-2023-1952, https://doi.org/10.5194/egusphere-2023-1952, 2023
Short summary
Short summary
Understanding the link between climate and carbon fluxes is crucial in predicting how climate change will impact carbon sinks. We estimated CO2 fluxes from deadwood in tropical Australia using wood microclimate variables (wood moisture content and temperature). Our model predicted that the majority of deadwood carbon is released as CO2, except when termite activity is detected. Future models should also incorporate wood traits, like species and chemical composition, to better predict fluxes.
Siqi Li, Bo Zhu, Xunhua Zheng, Pengcheng Hu, Shenghui Han, Jihui Fan, Tao Wang, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, Wei Zhang, and Yong Li
Biogeosciences, 20, 3555–3572, https://doi.org/10.5194/bg-20-3555-2023, https://doi.org/10.5194/bg-20-3555-2023, 2023
Short summary
Short summary
Physical soil erosion and particulate carbon, nitrogen and phosphorus loss modules were incorporated into the process-oriented hydro-biogeochemical model CNMM-DNDC to realize the accurate simulation of water-induced erosion and subsequent particulate nutrient losses at high spatiotemporal resolution.
Moritz Laub, Magdalena Necpalova, Marijn Van de Broek, Marc Corbeels, Samuel Mathu Ndungu, Monicah Wanjiku Mucheru-Muna, Daniel Mugendi, Rebecca Yegon, Wycliffe Waswa, Bernard Vanlauwe, and Johan Six
EGUsphere, https://doi.org/10.5194/egusphere-2023-1738, https://doi.org/10.5194/egusphere-2023-1738, 2023
Short summary
Short summary
We used the DayCent model to assess the potential impact of integrated soil fertility management (ISFM) on maize production, soil fertility and greenhouse gas emission in Kenya. After needed adjustments, DayCent could adequately represent the measured mean yields, soil carbon stock changes, and N2O emissions. Our results showed that soil fertility losses could be reduced with ISFM and that, while N2O emissions increased with ISFM, emissions per kg of yield decreased.
Ivan Cornut, Nicolas Delpierre, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, Otavio Campoe, Jose Luiz Stape, Vitoria Fernanda Santos, and Guerric le Maire
Biogeosciences, 20, 3093–3117, https://doi.org/10.5194/bg-20-3093-2023, https://doi.org/10.5194/bg-20-3093-2023, 2023
Short summary
Short summary
Potassium is an essential element for living organisms. Trees are dependent upon this element for certain functions that allow them to build their trunks using carbon dioxide. Using data from experiments in eucalypt plantations in Brazil and a simplified computer model of the plantations, we were able to investigate the effect that a lack of potassium can have on the production of wood. Understanding nutrient cycles is useful to understand the response of forests to environmental change.
Ivan Cornut, Guerric le Maire, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, and Nicolas Delpierre
Biogeosciences, 20, 3119–3135, https://doi.org/10.5194/bg-20-3119-2023, https://doi.org/10.5194/bg-20-3119-2023, 2023
Short summary
Short summary
After simulating the effects of low levels of potassium on the canopy of trees and the uptake of carbon dioxide from the atmosphere by leaves in Part 1, here we tried to simulate the way the trees use the carbon they have acquired and the interaction with the potassium cycle in the tree. We show that the effect of low potassium on the efficiency of the trees in acquiring carbon is enough to explain why they produce less wood when they are in soils with low levels of potassium.
Xiaojuan Yang, Peter Thornton, Daniel Ricciuto, Yilong Wang, and Forrest Hoffman
Biogeosciences, 20, 2813–2836, https://doi.org/10.5194/bg-20-2813-2023, https://doi.org/10.5194/bg-20-2813-2023, 2023
Short summary
Short summary
We evaluated the performance of a land surface model (ELMv1-CNP) that includes both nitrogen (N) and phosphorus (P) limitation on carbon cycle processes. We show that ELMv1-CNP produces realistic estimates of present-day carbon pools and fluxes. We show that global C sources and sinks are significantly affected by P limitation. Our study suggests that introduction of P limitation in land surface models is likely to have substantial consequences for projections of future carbon uptake.
Kevin R. Wilcox, Scott L. Collins, Alan K. Knapp, William Pockman, Zheng Shi, Melinda D. Smith, and Yiqi Luo
Biogeosciences, 20, 2707–2725, https://doi.org/10.5194/bg-20-2707-2023, https://doi.org/10.5194/bg-20-2707-2023, 2023
Short summary
Short summary
The capacity for carbon storage (C capacity) is an attribute that determines how ecosystems store carbon in the future. Here, we employ novel data–model integration techniques to identify the carbon capacity of six grassland sites spanning the US Great Plains. Hot and dry sites had low C capacity due to less plant growth and high turnover of soil C, so they may be a C source in the future. Alternately, cooler and wetter ecosystems had high C capacity, so these systems may be a future C sink.
Ara Cho, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Richard Wehr, and Maarten C. Krol
Biogeosciences, 20, 2573–2594, https://doi.org/10.5194/bg-20-2573-2023, https://doi.org/10.5194/bg-20-2573-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) is a useful constraint for estimating photosynthesis. To simulate COS leaf flux better in the SiB4 model, we propose a novel temperature function for enzyme carbonic anhydrase (CA) activity and optimize conductances using observations. The optimal activity of CA occurs below 40 °C, and Ball–Woodrow–Berry parameters are slightly changed. These reduce/increase uptakes in the tropics/higher latitudes and contribute to resolving discrepancies in the COS global budget.
Yunyao Ma, Bettina Weber, Alexandra Kratz, José Raggio, Claudia Colesie, Maik Veste, Maaike Y. Bader, and Philipp Porada
Biogeosciences, 20, 2553–2572, https://doi.org/10.5194/bg-20-2553-2023, https://doi.org/10.5194/bg-20-2553-2023, 2023
Short summary
Short summary
We found that the modelled annual carbon balance of biocrusts is strongly affected by both the environment (mostly air temperature and CO2 concentration) and physiology, such as temperature response of respiration. However, the relative impacts of these drivers vary across regions with different climates. Uncertainty in driving factors may lead to unrealistic carbon balance estimates, particularly in temperate climates, and may be explained by seasonal variation of physiology due to acclimation.
Alexander J. Norton, A. Anthony Bloom, Nicholas C. Parazoo, Paul A. Levine, Shuang Ma, Renato K. Braghiere, and T. Luke Smallman
Biogeosciences, 20, 2455–2484, https://doi.org/10.5194/bg-20-2455-2023, https://doi.org/10.5194/bg-20-2455-2023, 2023
Short summary
Short summary
This study explores how the representation of leaf phenology affects our ability to predict changes to the carbon balance of land ecosystems. We calibrate a new leaf phenology model against a diverse range of observations at six forest sites, showing that it improves the predictive capability of the processes underlying the ecosystem carbon balance. We then show how changes in temperature and rainfall affect the ecosystem carbon balance with this new model.
Libo Wang, Vivek K. Arora, Paul Bartlett, Ed Chan, and Salvatore R. Curasi
Biogeosciences, 20, 2265–2282, https://doi.org/10.5194/bg-20-2265-2023, https://doi.org/10.5194/bg-20-2265-2023, 2023
Short summary
Short summary
Plant functional types (PFTs) are groups of plant species used to represent vegetation distribution in land surface models. There are large uncertainties associated with existing methods for mapping land cover datasets to PFTs. This study demonstrates how fine-resolution tree cover fraction and land cover datasets can be used to inform the PFT mapping process and reduce the uncertainties. The proposed largely objective method makes it easier to implement new land cover products in models.
Jennifer A. Holm, David M. Medvigy, Benjamin Smith, Jeffrey S. Dukes, Claus Beier, Mikhail Mishurov, Xiangtao Xu, Jeremy W. Lichstein, Craig D. Allen, Klaus S. Larsen, Yiqi Luo, Cari Ficken, William T. Pockman, William R. L. Anderegg, and Anja Rammig
Biogeosciences, 20, 2117–2142, https://doi.org/10.5194/bg-20-2117-2023, https://doi.org/10.5194/bg-20-2117-2023, 2023
Short summary
Short summary
Unprecedented climate extremes (UCEs) are expected to have dramatic impacts on ecosystems. We present a road map of how dynamic vegetation models can explore extreme drought and climate change and assess ecological processes to measure and reduce model uncertainties. The models predict strong nonlinear responses to UCEs. Due to different model representations, the models differ in magnitude and trajectory of forest loss. Therefore, we explore specific plant responses that reflect knowledge gaps.
Veronika Kronnäs, Klas Lucander, Giuliana Zanchi, Nadja Stadlinger, Salim Belyazid, and Cecilia Akselsson
Biogeosciences, 20, 1879–1899, https://doi.org/10.5194/bg-20-1879-2023, https://doi.org/10.5194/bg-20-1879-2023, 2023
Short summary
Short summary
In a future climate, extreme droughts might become more common. Climate change and droughts can have negative effects on soil weathering and plant health.
In this study, climate change effects on weathering were studied on sites in Sweden using the model ForSAFE, a climate change scenario and an extreme drought scenario. The modelling shows that weathering is higher during summer and increases with global warming but that weathering during drought summers can become as low as winter weathering.
Agustín Sarquis and Carlos A. Sierra
Biogeosciences, 20, 1759–1771, https://doi.org/10.5194/bg-20-1759-2023, https://doi.org/10.5194/bg-20-1759-2023, 2023
Short summary
Short summary
Although plant litter is chemically and physically heterogenous and undergoes multiple transformations, models that represent litter dynamics often ignore this complexity. We used a multi-model inference framework to include information content in litter decomposition datasets and studied the time it takes for litter to decompose as measured by the transit time. In arid lands, the median transit time of litter is about 3 years and has a negative correlation with mean annual temperature.
Qi Guan, Jing Tang, Lian Feng, Stefan Olin, and Guy Schurgers
Biogeosciences, 20, 1635–1648, https://doi.org/10.5194/bg-20-1635-2023, https://doi.org/10.5194/bg-20-1635-2023, 2023
Short summary
Short summary
Understanding terrestrial sources of nitrogen is vital to examine lake eutrophication changes. Combining process-based ecosystem modeling and satellite observations, we found that land-leached nitrogen in the Yangtze Plain significantly increased from 1979 to 2018, and terrestrial nutrient sources were positively correlated with eutrophication trends observed in most lakes, demonstrating the necessity of sustainable nitrogen management to control eutrophication.
Vivek K. Arora, Christian Seiler, Libo Wang, and Sian Kou-Giesbrecht
Biogeosciences, 20, 1313–1355, https://doi.org/10.5194/bg-20-1313-2023, https://doi.org/10.5194/bg-20-1313-2023, 2023
Short summary
Short summary
The behaviour of natural systems is now very often represented through mathematical models. These models represent our understanding of how nature works. Of course, nature does not care about our understanding. Since our understanding is not perfect, evaluating models is challenging, and there are uncertainties. This paper illustrates this uncertainty for land models and argues that evaluating models in light of the uncertainty in various components provides useful information.
Benjamin S. Felzer
Biogeosciences, 20, 573–587, https://doi.org/10.5194/bg-20-573-2023, https://doi.org/10.5194/bg-20-573-2023, 2023
Short summary
Short summary
The future of the terrestrial carbon sink depends upon the legacy of past land use, which determines the stand age of the forest and nutrient levels in the soil, both of which affect vegetation growth. This study uses a modeling approach to determine the effects of land-use legacy in the conterminous US from 1750 to 2099. Not accounting for land legacy results in a low carbon sink and high biomass, while water variables are not as highly affected.
Bailu Zhao and Qianlai Zhuang
Biogeosciences, 20, 251–270, https://doi.org/10.5194/bg-20-251-2023, https://doi.org/10.5194/bg-20-251-2023, 2023
Short summary
Short summary
In this study, we use a process-based model to simulate the northern peatland's C dynamics in response to future climate change during 1990–2300. Northern peatlands are projected to be a C source under all climate scenarios except for the mildest one before 2100 and C sources under all scenarios afterwards.
We find northern peatlands are a C sink until pan-Arctic annual temperature reaches −2.09 to −2.89 °C. This study emphasizes the vulnerability of northern peatlands to climate change.
Lin Yu, Silvia Caldararu, Bernhard Ahrens, Thomas Wutzler, Marion Schrumpf, Julian Helfenstein, Chiara Pistocchi, and Sönke Zaehle
Biogeosciences, 20, 57–73, https://doi.org/10.5194/bg-20-57-2023, https://doi.org/10.5194/bg-20-57-2023, 2023
Short summary
Short summary
In this study, we addressed a key weakness in current ecosystem models regarding the phosphorus exchange in the soil and developed a new scheme to describe this process. We showed that the new scheme improved the model performance for plant productivity, soil organic carbon, and soil phosphorus content at five beech forest sites in Germany. We claim that this new model could be used as a better tool to study ecosystems under future climate change, particularly phosphorus-limited systems.
Bimal K. Bhattacharya, Kaniska Mallick, Devansh Desai, Ganapati S. Bhat, Ross Morrison, Jamie R. Clevery, William Woodgate, Jason Beringer, Kerry Cawse-Nicholson, Siyan Ma, Joseph Verfaillie, and Dennis Baldocchi
Biogeosciences, 19, 5521–5551, https://doi.org/10.5194/bg-19-5521-2022, https://doi.org/10.5194/bg-19-5521-2022, 2022
Short summary
Short summary
Evaporation retrieval in heterogeneous ecosystems is challenging due to empirical estimation of ground heat flux and complex parameterizations of conductances. We developed a parameter-sparse coupled ground heat flux-evaporation model and tested it across different limits of water stress and vegetation fraction in the Northern/Southern Hemisphere. The model performed particularly well in the savannas and showed good potential for evaporative stress monitoring from thermal infrared satellites.
Jie Zhang, Wenxin Zhang, Per-Erik Jansson, and Søren O. Petersen
Biogeosciences, 19, 4811–4832, https://doi.org/10.5194/bg-19-4811-2022, https://doi.org/10.5194/bg-19-4811-2022, 2022
Short summary
Short summary
In this study, we relied on a properly controlled laboratory experiment to test the model’s capability of simulating the dominant microbial processes and the emissions of one greenhouse gas (nitrous oxide, N2O) from agricultural soils. This study reveals important processes and parameters that regulate N2O emissions in the investigated model framework and also suggests future steps of model development, which have implications on the broader communities of ecosystem modelers.
Jan De Pue, José Miguel Barrios, Liyang Liu, Philippe Ciais, Alirio Arboleda, Rafiq Hamdi, Manuela Balzarolo, Fabienne Maignan, and Françoise Gellens-Meulenberghs
Biogeosciences, 19, 4361–4386, https://doi.org/10.5194/bg-19-4361-2022, https://doi.org/10.5194/bg-19-4361-2022, 2022
Short summary
Short summary
The functioning of ecosystems involves numerous biophysical processes which interact with each other. Land surface models (LSMs) are used to describe these processes and form an essential component of climate models. In this paper, we evaluate the performance of three LSMs and their interactions with soil moisture and vegetation. Though we found room for improvement in the simulation of soil moisture and drought stress, the main cause of errors was related to the simulated growth of vegetation.
Jarmo Mäkelä, Laura Arppe, Hannu Fritze, Jussi Heinonsalo, Kristiina Karhu, Jari Liski, Markku Oinonen, Petra Straková, and Toni Viskari
Biogeosciences, 19, 4305–4313, https://doi.org/10.5194/bg-19-4305-2022, https://doi.org/10.5194/bg-19-4305-2022, 2022
Short summary
Short summary
Soils account for the largest share of carbon found in terrestrial ecosystems, and accurate depiction of soil carbon decomposition is essential in understanding how permanent these carbon storages are. We present a straightforward way to include carbon isotope concentrations into soil decomposition and carbon storages for the Yasso model, which enables the model to use 13C as a natural tracer to track changes in the underlying soil organic matter decomposition.
Vasileios Myrgiotis, Thomas Luke Smallman, and Mathew Williams
Biogeosciences, 19, 4147–4170, https://doi.org/10.5194/bg-19-4147-2022, https://doi.org/10.5194/bg-19-4147-2022, 2022
Short summary
Short summary
This study shows that livestock grazing and grass cutting can determine whether a grassland is adding (source) or removing (sink) carbon (C) to/from the atmosphere. The annual C balance of 1855 managed grassland fields in Great Britain was quantified for 2017–2018 using process modelling and earth observation data. The examined fields were, on average, small C sinks, but the summer drought of 2018 led to a 9-fold increase in the number of fields that became C sources in 2018 compared to 2017.
J. Robert Logan, Kathe E. Todd-Brown, Kathryn M. Jacobson, Peter J. Jacobson, Roland Vogt, and Sarah E. Evans
Biogeosciences, 19, 4129–4146, https://doi.org/10.5194/bg-19-4129-2022, https://doi.org/10.5194/bg-19-4129-2022, 2022
Short summary
Short summary
Understanding how plants decompose is important for understanding where the atmospheric CO2 they absorb ends up after they die. In forests, decomposition is controlled by rain but not in deserts. We performed a 2.5-year study in one of the driest places on earth (the Namib desert in southern Africa) and found that fog and dew, not rainfall, closely controlled how quickly plants decompose. We also created a model to help predict decomposition in drylands with lots of fog and/or dew.
Carlos A. Sierra, Verónika Ceballos-Núñez, Henrik Hartmann, David Herrera-Ramírez, and Holger Metzler
Biogeosciences, 19, 3727–3738, https://doi.org/10.5194/bg-19-3727-2022, https://doi.org/10.5194/bg-19-3727-2022, 2022
Short summary
Short summary
Empirical work that estimates the age of respired CO2 from vegetation tissue shows that it may take from years to decades to respire previously produced photosynthates. However, many ecosystem models represent respiration processes in a form that cannot reproduce these observations. In this contribution, we attempt to provide compelling evidence, based on recent research, with the aim to promote a change in the predominant paradigm implemented in ecosystem models.
César Dionisio Jiménez-Rodríguez, Mauro Sulis, and Stanislaus Schymanski
Biogeosciences, 19, 3395–3423, https://doi.org/10.5194/bg-19-3395-2022, https://doi.org/10.5194/bg-19-3395-2022, 2022
Short summary
Short summary
Vegetation relies on soil water reservoirs during dry periods. However, when this source is depleted, the plants may access water stored deeper in the rocks. This rock moisture contribution is usually omitted in large-scale models, which affects modeled plant water use during dry periods. Our study illustrates that including this additional source of water in the Community Land Model improves the model's ability to reproduce observed plant water use at seasonally dry sites.
Cited articles
April, R., Newton, R., and Truettner Coles, L.: Chemical weathering in two Adirondack watersheds: Past and present-day rates, Geol. Soc. Am. Bull., 97, 1232–1238, 1986.
Arora, V. K. and Boer, G. J.: A Representation of Variable Root Distribution in Dynamic Vegetation Models, Earth Interact., 7, 1–19, 2003.
Austin, A. T.: Differential effects of precipitation on production and decomposition along a rainfall gradient in Hawaii, Ecology, 83, 328–338, 2002.
Berg, B. and McClaugherty, C.: Plant litter, Springer-Verlag, Berlin Heidelberg, Germany, 2nd Edn., 2008.
Berner, R. A.: The Rise of Plants and Their Effect on Weathering and Atmospheric CO2, Science, 276, 544–546, 1997.
Brimhall, G. H. and Dietrich, W. E.: Constitutive mass balance relations between chemical composition, volume, density, porosity, and strain in metasomatic hydrochemical systems: Results on weathering and pedogenesis, Geochim. Cosmochim. Ac., 51, 567–587, 1987.
Busacca, A. J. and Singer, M. J.: Pedogenesis of a chronosequence in the S}acramento Valley, California, U.S.A., II. {Elemental chemistry of silt fractions, Geoderma, 44, 43–75, 1989.
Chadwick, O. A., Derry, L. A., Vitousek, P. M., Huebert, B. J., and Hedin, L. O.: Changing sources of nutrients during four million years of ecosystem development, Nature, 397, 491–497, 1999.
Chadwick, O. A., Gavenda, R. T., Kelly, E. F., Ziegler, K., Olson, C. G., Elliott, W. C., and Hendricks, D. M.: The impact of climate on the biogeochemical functioning of volcanic soils, Chem. Geol., 202, 195–223, 2003.
Chen, Z. and Wang, A. Y. X.: Effects of intergranular additions of oxides on the coercivity, thermal stability and microstructure of N}d-Fe-{B magnets, J. Magn. Magn. Mater., 162, 307–313, 1996.
Cohen, S., Willgoose, G., and Hancock, G.: The mARM3D spatially distributed soil evolution model: Three-dimensional model framework and analysis of hillslope and landform reponses, J. Geophys. Res., 115, F04013, https://doi.org/10.1029/2009JF001536, 2010.
Craig, H. and Poreda, R. J.: Cosmogenic 3He in terrestrial rocks: The summit lavas of Maui, Proc. Natl. Acad. Sci., 83, 1970–1974, 1986.
Dietrich, W. E., Reiss, R., Hsu, M., and Montgomery, D. R.: A process-based model for colluvial soil depth and shallow landsliding using digital elevation data, Hydrol. Proc., 9, 383–400, 1995.
Finke, P. A. and Hutson, J. L.: Modelling soil genesis in calcareous loess, Geoderma, 145, 462–479, 2008.
Gabet, E. J., Reichman, O. J., and Seabloom, E. W.: The Effects of Bioturbation on Soil Processes and Sediment Transport, Ann. Rev. Earth Planet. Sci., 31, 249–273, 2003.
Gaillardet, J., Dupré, B., Louvat, P., and Allègre, C. J.: Global silicate weathering and CO2 consumption rates deduced from the chemistry of large rivers, Chem. Geol., 159, 3–30, 1999.
Garrels, R. M. and Christ, C. L.: Solutions, Minerals and Equilibria, Harper, New York, 1965.
Goddéris, Y. and Donnadieu, Y.: Climatic plant power, Nature, 460, 40–41, 2009.
Goddéris, Y., Francois, L. M., Probst, A., Schott, J., Moncoulon, D., Labat, D., and Viville, D.: Modelling weathering processes at the catchment scale: The WITCH numerical model, Geochim. Cosmochim. Ac., 70, 1128–1147, 2006.
Hargreaves, G. H. and Samani, Z. A.: Reference crop evapotranspiration from temperature, Appl. Engin. Agr., 1, 96–99, 1985.
Haynes, W. M. and Lide, D. R. (Eds.): CRC handbook of chemistry and physics: a ready-reference book of chemical and physical data, CRC: press, London, 91st Edn., 2011.
Hedin, L. O., Vitousek, P. M., and Matson, P. A.: Nutrient losses over four million years of tropical forest development, Ecology, 84, 2231–2255, 2003.
Hillel, D.: Introduction to environmental soil physics, Elsevier Academic Press, San Diego, 2004.
Hinsinger, P. and Jaillard, B.: Root-induced release of interlayer potassium and vermiculitization of phlogopite as related to potassium depletion in the rhizosphere of ryegrass, J. Soil Sci., 44, 525–534, 1993.
Hinsinger, P., Elsass, F., Jaillard, B., and Robert, M.: Root-induced irreversible transformation of a trioctahedral mica in the rhizosphere of rape, J. Soil Sci., 44, 535–545, 1993.
Hinsinger, P., Bengough, A. G., Vetterlein, D., and Young, I. M.: Rhizosphere: biophysics, biogeochemistry and ecological relevance, Plant Soil, 321, 117–152, 2009.
Hoosbeek, M. R. and Bryant, R. B.: Towards the quantitative modeling of pedogenesis - A review, Geoderma, 55, 183–210, 1992.
Hotchkiss, S., Vitousek, P. M., Chadwick, O. A., and Price, J.: Geomorphological Change, and the Interpretation of Soil and Ecosystem, Ecosystems, 3, 522–533, 2000.
Hughes, C. J.: Igneous Petrology, Elsevier, Amsterdam, 1982.
Humphreys, G. S. and Field, R.: Mixing, mounding and other aspects of bioturbation: Implications for pedogenesis, in: 16th World Congress of Soil Science, International Society of Soil Science, Montpellier, registered paper no. 18, 1998.
Hutchens, E.: Microbial selectivity on mineral surfaces: possible implications for weathering processes, Fung. Biol. Rev., 2009, 115–121, 2009.
Jackson, R. B., Canadell, J., Ehleringer, J. R., Mooney, H. A., Sala, O. E., and Schulze, E. D.: A global analysis of root distributions for terrestrial biomes, Oecologia, 108, 389–411, 1996.
Jobbágy, E. G. and Jackson, R. B.: The distribution of soil nutrients with depth: Global patterns and the imprint of plants, Biogeochemistry, 53, 51–77, 2001.
Johnson, M. O., Mudd, S. M., Pillans, B., Spooner, N. A., Fifield, L. K., Kirkby, M. J., and Gloor, M.: Quantifying the rate and depth dependence of bioturbation based on optically-stimulated luminescence (OSL) dates and meteoric 10-Be, Earth Surf. Proc., https://doi.org/10.1002/esp.3520, 2014.
Jones, H. G.: Plants and microclimate, Cambridge University Press, Cambridge, 1992.
Kirkby, M. J.: Soil Development Models as a Component of Slope Models, Earth Surf. Proc., 2, 203–230, 1977.
Kirkby, M. J.: A basis for soil-profile modeling, J. Soil Sci., 36, 97–121, 1985.
Knecht, M. F. and Goransson, A.: Terrestrial plants require nutrients in similar proportions, Tree Physiol., 24, 447–460, 2004.
Kouwen, N.: WATFLOOD: Hydrological Model Routing and Flow Forcasting System, user Manual, 2010.
Kurz, M. D.: In situ production of terrestrial cosmogenic helium and some applications to geochronology, Geochim. Cosmochim. Ac., 50, 2855–2862, 1986.
Lenton, T. M., Crouch, M., Johnson, M., Pires, N., and Dolan, L.: First plants cooled the Ordivician, Nat. Geosci., 5, 86–89, 2012.
Linder, S.: Analysis for Detecting and Correcting Nutrient Imbalances in Norway Spruce, Ecol. Bullet., 44, 178–190, 1995.
Lindsay, W. L.: Chemical Equilibria in Soils, John Wiley & Sons, New York, 1979.
Lucas, Y.: The role of plants in controlling rates and products of weathering: Importance of biological pumping, Ann. Rev. Earth Planet. Sci., 29, 135–163, 2001.
Malhi, Y., Aragão, L. E. O. C., Metcalfe, D. B., Paiva, R., Quesada, C. A., Almeida, S., Anderson, L., Brando, P., Chambers, J. Q., Da Costa, A. C. L., Hutyra, L. R., Oliveira, P., Patiño, S., Pyle, E. H., Robertson, A. L., and Teixeira, L. M.: Comprehensive assessment of carbon productivity, allocation and storage in three Amazonian forests, Glob. Change Biol., 15, 1255–1274, 2009.
McBirney, A. R.: Igneous Petrology, Jones and Bartlett Publishers, Boston, 3rd Edn., 2007.
Millot, R., Gaillardet, J., Dupré, B., and Allègre, C. J.: The global control of silicate weathering rates and the coupling with physical erosion: new insights from rivers of the Canadian Shield, Earth Planet. Sci., 196, 83–98, 2002.
Minasny, B. and McBratney, A. B.: A rudimentary mechanistic model for soil production and landscape development, Geoderma, 90, 3–21, 1999.
Minasny, B. and McBratney, A. B.: A rudimentary mechanistic model for soil formation and landscape development II. A two-dimensional model incorporating chemical weathering, Geoderma, 103, 161–179, 2001.
Minasny, B., McBratney, A. B., and Salvador-Blanes, S.: Quantitative models for pedogenesis – A review, Geoderma, 144, 140–157, 2008.
Morton, K. W. and Mayers, D. F.: Numerical solution of partial differential equations, Cambridge University Press, Cambridge, UK, 2nd Edn., 2005.
Moulton, K. L., West, J., and Berner, R. A.: Solute flux and mineral mass balance approaches to the quantification of plant effects on silicate weathering, Am. J. Sci., 300, 539–570, 2000.
Nesbitt, H. W. and Young, G. M.: Prediction of some weathering trends of plutonic and volcanic rocks based on thermodynamic and kinetic considerations, Geochim. Cosmochim. Ac., 48, 1523–1534, 1984.
Nishiizumi, K., Klein, J., Middleton, R., and Craig, H.: Cosmogenic 10Be, 26Al, and 3He in olivine from Maui lavas, Earth Planet. Sci. Lett., 98, 263–266, 1990.
Pagani, M., Caldeira, K., Berner, R., and Beerling, D.: The role of terrestrial plants in limiting atmospheric CO2 decline over the past 24 million years, Nature, 460, 85–89, 2009.
Parkhurst, D. L. and Appelo, C. A. J.: User's Guide to PHREEQC (Version 2) - A Computer Program for Speciation, Batch-Reaction, One-Dimensional Transport, and Inverse Geochemical Calculations, U.S. Department of the interior, U.S. Geological Survey, Denver, Colorado, water Resources Investigations Report 99-4259, 1999.
Penman, H. L.: Gas and vapour movements in the soil: I. the diffusion of vapours through porous solids., J. Agr. Soc., 30, 437–462, 1940.
Porder, S. and Chadwick, O. A.: Climate and soil-age constraints on nutrient uplift and retention by plants, Ecol. Soc. Am., 90, 623–636, 2009.
Porder, S., Hilley, G. E., and Chadwick, O. A.: Chemical weathering, mass loss, and dust inputs across a climate by time matrix in the Hawaiian Islands, Earth Planet. Sci. Lett., 258, 414–427, 2007.
Quesada, C. A., Phillips, O. L., Schwarz, M., Czimczik, C. I., Baker, T. R., Patiño, S., Fyllas, N. M., Hodnett, M. G., Herrera, R., Almeida, S., Alvarez Dávila, E., Arneth, A., Arroyo, L., Chao, K. J., Dezzeo, N., Erwin, T., di Fiore, A., Higuchi, N., Honorio Coronado, E., Jimenez, E. M., Killeen, T., Lezama, A. T., Lloyd, G., López-González, G., Luizão, F. J., Mahli, Y., Monteagudo, A., Neill, D. A., Núñez Vargas, P., Paiva, R., Peacock, J., Peñuela, M. C., Peña Cruz, A., Pitman, N., Priante Filho, N., Prieto, A., Ramíez, H., Rudas, A., Salomão, R., Santos, A. J. B., Schmerler, J., Silva, N., Silveira, M., Vásquez, R., Vieira, I., Terborgh, J., and Lloyd, J.: Basin-wide variations in Amazon forest structure and function are mediated by both soils and climate, Biogeosciences, 9, 2203–2246, https://doi.org/10.5194/bg-9-2203-2012, 2012.
Raich, J. W.: Aboveground productivity and soil respiration in three Hawaiian rain forests, For. Ecol. Manag., 107, 309–318, 1998.
Raymo, M. E. and Ruddiman, W. F.: Tectonic forcing of late Cenozoic climate, Nature, 359, 117–122, 1992.
Raymo, M. E., Ruddiman, W. F., and Froelich, P. N.: Influence of late Cenozoic mountain building on ocean geochemical cycles, Geology, 16, 649–653, 1988.
Riebe, C. S., Kirchner, J. W., Granger, D. E., and Finkel, R. C.: Strong tectonic and weak climatic control of long-term chemical weathering rates, Geology, 29, 511–514, 2001.
Riebe, C. S., Kirchner, J., and Finkel, R.: Sharp decrease in long-term chemical weathering rates along an altitudinal transect, Earth Planet. Sci. Lett., 218, 421–434, 2004a.
Riebe, C. S., Kirchner, J. W., and Finkel, R. C.: Erosional and climatic effects on long-term chemical weathering rates in granitic landscapes spanning diverse climatic regimes, Earth Planet. Sci. Lett., 224, 547–562, 2004b.
Salvador-Blanes, S., Minasny, B., and McBratney, A.: Modelling long-term in situ soil profile evolution: application to the genesis of soil profiles containing stone layers, Europ. J. Soil Sci., 58, 1535–1548, 2007.
Sander, H.: The porosity of tropical soils and implications for geomorphological and pedogenetic processes and the movement of solutions within the weathering cover, Catena, 42, 129–137, 2002.
Schuur, A. G. and Matson, P. A.: Net primary productivity and nutrient cycling across a mesic to wet precipitation gradient in Hawaiian montane forest, Oecologia, 128, 431–442, 2001.
Tardy, Y., Bocquier, G., Paquet, H., and Millot, G.: Formation of clay from granite and its distribution in relation to climate and topography, Geoderma, 10, 271–284, 1973.
Taylor, A. and Blum, J. D.: Relation between soil age and silicate weathering rates determined from the chemical evolution of a glacial chronosequence, Geology, 23, 979–982, 1995.
Townsend, A. R., Vitousek, P. M., and Trumbore, S. E.: Soil organic matter dynamics along gradients in temperature and land use on the island of Hawaii, Ecology, 76, 721–733, 1995.
Trumbore, S. E., Davidson, E. A., Barbosa de Camargo, P., Nepstad, D. C., and Martinelli, A. L.: Belowground cycling of carbon in forests and pastures of Eastern Amazonia, Global Biogeochem. Cy., 9, 515–528, 1995.
Urey, H. C.: The planets: their origin and development, Yale University Press, New Haven, Connecticut, 1952.
Van Dam, D., Veldkamp, E., and Van Breemen, N.: Soil organic carbon dynamics: variability with depth in forested and deforested soils under pasture in Costa Rica, Biogeochemistry, 39, 343–375, 1997.
Vanwalleghem, T., Stockmann, U., Minasny, B., and McBratney, A. B.: A quantitative model for integrating landscape evolution and soil formation, J. Geophys. Res.-Earth Surf., 118, 331–347, 2013.
Veldkamp, E.: Organic-carbon turnover in three tropical soils under pasture after deforestation, Soil Sci. Soc. Am. J., 58, 175–180, 1994.
Vitousek, P. M. and Farrington, H.: Nutrient limitation and soil development: Experimental test of a biogeochemical theory, Biogeochemistry, 37, 63–75, 1997.
Vitousek, P. M. and Sanford Jr, R. L.: Nutrient cycling in moist tropical forest, Ann. Rev. Ecol. System., 17, 137–167, 1986.
Vitousek, P. M., Walker, L. R., Whiteaker, L. D., and Matson, P. A.: Nutrient limitations to plant growth during primary succession in Hawaii Volcanoes National Park, Biogeochemistry, 23, 197–215, 1993.
Vitousek, P. M., Turner, D. R., Parton, W. J., and Sanford, R. L.: Litter decomposition on the Mauna Loa environmental matrix, Hawai'i: patterns, mechanisms and models, Ecology, 75, 418–429, 1994.
von Blackenburg, F.: The control mechanisms of erosion and weathering at basin scale from cosmogenic nuclides in river sediment, Earth Planet. Sci. Lett., 237, 462–479, 2005.
Walker, J. C. G., Hays, P. B., and Kasting, J. F.: A negative feedback mechanism for the long-term stabilization of Earth's surface temperature, J. Geophys. Res., 86, 9776–9782, 1981.
Wallman, P., Svensson, M. G. E., Sverdrup, H., and Belyazid, S.: ForSAFE-an integrated process-orientated forest model for long-term sustainability assessments, For. Ecol. Manag., 207, 19–36, 2005.
Warfvinge, P. and Sverdrup, H.: Calculating critical loads of acid deposition with PROFILE – a steady-state soil chemistry model, Water Air Soil Pollut., 63, 119–143, 1992.
White, A. F., Bullen, T. D., Schulz, M. S., Blum, A. E., Huntington, T. G., and Peters, N. E.: Differential rates of feldspar weathering in granitic regoliths, Geochim. Cosmochim. Ac., 65, 847–869, 2001.
White, A. F., Schulz, M. S., Vivit, D. V., Blum, A. E., Stonestrom, D. A., and Anderson, S. P.: Chemical weathering of a marine terrace chronosequence, Santa Cruz, California I: Interpreting rates and controls based on soil concentration-depth profiles, Geochim. Cosmochim. Ac., 72, 36–68, 2008.
Wilkinson, M. T. and Humphreys, G. S.: Exploring pedogenesis via nuclide-based soil production rates and OSL-based bioturbation rates, Austr. J. Soil Res., 43, 767–779, 2005.
Yoo, K. and Mudd, S. M.: Toward process-based modeling of geochemical soil formation across diverse landforms: A new mathematical framework, Geoderma, 146, 248–260, 2008.
Yoo, K., Amundson, R., Heimsath, A. M., and Dietrich, W. E.: Process-based model linking pocket gopher (Thomomys bottae) activity to sediment transport and soil thickness, Geology, 33, 917–920, 2005.
Short summary
We present a soil evolution model which incorporates the major processes of pedogenesis: mineral weathering, leaching, erosion, bioturbation, nutrient cycling and organic carbon inputs. We compare the modelled soil properties with soil chronosequences from Hawaii and demonstrate that the model captures well the key components of soil development. The model also highlights the important role that vegetation plays in accelerating the weathering and the release of globally important nutrients.
We present a soil evolution model which incorporates the major processes of pedogenesis: mineral...
Altmetrics
Final-revised paper
Preprint