Articles | Volume 13, issue 11
https://doi.org/10.5194/bg-13-3319-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-13-3319-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
07 Jun 2016
Research article |
| 07 Jun 2016
Temperature-mediated changes in microbial carbon use efficiency and 13C discrimination
Christoph A. Lehmeier
Department of Ecology and Evolutionary Biology, Kansas Biological
Survey, University of Kansas, 2101 Constant Ave., Lawrence, KS 66047, USA
Ford Ballantyne IV
Department of Ecology and Evolutionary Biology, Kansas Biological
Survey, University of Kansas, 2101 Constant Ave., Lawrence, KS 66047, USA
now at: Odum School of Ecology, University of Georgia, 140 E. Green St.,
Athens, GA 30602, USA
Kyungjin Min
Department of Ecology and Evolutionary Biology, Kansas Biological
Survey, University of Kansas, 2101 Constant Ave., Lawrence, KS 66047, USA
Sharon A. Billings
CORRESPONDING AUTHOR
Department of Ecology and Evolutionary Biology, Kansas Biological
Survey, University of Kansas, 2101 Constant Ave., Lawrence, KS 66047, USA
Related authors
S. A. Billings, L. K. Tiemann, F. Ballantyne IV, C. A. Lehmeier, and K. Min
SOIL, 1, 313–330, https://doi.org/10.5194/soil-1-313-2015, https://doi.org/10.5194/soil-1-313-2015, 2015
Short summary
Short summary
We highlight observations relevant to soil organic matter (SOM) decay and retention but often emanating from disparate fields. First, we describe relevant natural and artificial aquatic environments. Second, we describe how intrinsic patterns of decay kinetics for purified soil substrates are useful for defining baseline rates. Third, we describe theoretical advances important for the discipline. Last, we describe how these advances can be used to unravel the mysteries of deep SOM persistence.
Kachinga Silwimba, Alejandro N. Flores, Irene Cionni, Sharon A. Billings, Pamela L. Sullivan, Hoori Ajami, Daniel R. Hirmas, and Li Li
EGUsphere, https://doi.org/10.5194/egusphere-2025-713, https://doi.org/10.5194/egusphere-2025-713, 2025
This preprint is open for discussion and under review for Geoscientific Model Development (GMD).
Short summary
Short summary
This study evaluates the influence of soil hydraulic parameterizations on soil moisture simulations in CLM5 across the CONUS (1980–2010) using Empirical Orthogonal Function (EOF) analysis. Results reveal significant regional discrepancies, particularly in the Great Plains, where parameter uncertainty drives biases in soil moisture variability. Comparisons with ERA5-Land highlight seasonal mismatches, underscoring the need for improved soil parameterization to enhance land surface model accuracy.
William R. Wieder, Derek Pierson, Stevan Earl, Kate Lajtha, Sara G. Baer, Ford Ballantyne, Asmeret Asefaw Berhe, Sharon A. Billings, Laurel M. Brigham, Stephany S. Chacon, Jennifer Fraterrigo, Serita D. Frey, Katerina Georgiou, Marie-Anne de Graaff, A. Stuart Grandy, Melannie D. Hartman, Sarah E. Hobbie, Chris Johnson, Jason Kaye, Emily Kyker-Snowman, Marcy E. Litvak, Michelle C. Mack, Avni Malhotra, Jessica A. M. Moore, Knute Nadelhoffer, Craig Rasmussen, Whendee L. Silver, Benjamin N. Sulman, Xanthe Walker, and Samantha Weintraub
Earth Syst. Sci. Data, 13, 1843–1854, https://doi.org/10.5194/essd-13-1843-2021, https://doi.org/10.5194/essd-13-1843-2021, 2021
Short summary
Short summary
Data collected from research networks present opportunities to test theories and develop models about factors responsible for the long-term persistence and vulnerability of soil organic matter (SOM). Here we present the SOils DAta Harmonization database (SoDaH), a flexible database designed to harmonize diverse SOM datasets from multiple research networks.
Hang Wen, Pamela L. Sullivan, Gwendolyn L. Macpherson, Sharon A. Billings, and Li Li
Biogeosciences, 18, 55–75, https://doi.org/10.5194/bg-18-55-2021, https://doi.org/10.5194/bg-18-55-2021, 2021
Short summary
Short summary
Carbonate weathering is essential in regulating carbon cycle at the century timescale. Plant roots accelerate weathering by elevating soil CO2 via respiration. It however remains poorly understood how and how much rooting characteristics modify flow paths and weathering. This work indicates that deepening roots in woodlands can enhance carbonate weathering by promoting recharge and CO2–carbonate contact in the deep, carbonate-abundant subsurface.
Kate M. Buckeridge, Kate A. Edwards, Kyungjin Min, Susan E. Ziegler, and Sharon A. Billings
SOIL, 6, 399–412, https://doi.org/10.5194/soil-6-399-2020, https://doi.org/10.5194/soil-6-399-2020, 2020
Short summary
Short summary
We do not understand the short- and long-term temperature response of soil denitrifiers, which produce and consume N2O. Boreal forest soils from a long-term climate gradient were incubated in short-term warming experiments. We found stronger N2O consumption at depth, inconsistent microbial gene abundance and function, and consistent higher N2O emissions from warmer-climate soils at warmer temperatures. Consideration of our results in models will contribute to improved climate projections.
S. A. Billings, L. K. Tiemann, F. Ballantyne IV, C. A. Lehmeier, and K. Min
SOIL, 1, 313–330, https://doi.org/10.5194/soil-1-313-2015, https://doi.org/10.5194/soil-1-313-2015, 2015
Short summary
Short summary
We highlight observations relevant to soil organic matter (SOM) decay and retention but often emanating from disparate fields. First, we describe relevant natural and artificial aquatic environments. Second, we describe how intrinsic patterns of decay kinetics for purified soil substrates are useful for defining baseline rates. Third, we describe theoretical advances important for the discipline. Last, we describe how these advances can be used to unravel the mysteries of deep SOM persistence.
Related subject area
Biogeochemistry: Stable Isotopes & Other Tracers
Stable iron isotope signals indicate a “pseudo-abiotic” process driving deep iron release in methanic sediments
How long does carbon stay in a near-pristine central Amazon forest? An empirical estimate with radiocarbon
No increase is detected and modeled for the seasonal cycle amplitude of δ13C of atmospheric carbon dioxide
Sea ice and mixed layer depth influence on nitrate depletion and associated isotopic effects in the Drake Passage – Weddell Sea region, Southern Ocean
Fungi present distinguishable isotopic signals when grown on glycolytic versus tricarboxylic acid cycle intermediates
Bias in calculating gross nitrification rates in forested catchments using the triple oxygen isotopic composition (Δ17O) of stream nitrate
Position-specific kinetic isotope effects for nitrous oxide: a new expansion of the Rayleigh model
Technical note: A Bayesian mixing model to unravel isotopic data and quantify trace gas production and consumption pathways for time series data – Time-resolved FRactionation And Mixing Evaluation (TimeFRAME)
Separating above-canopy CO2 and O2 measurements into their atmospheric and biospheric signatures
Climatic controls on leaf wax hydrogen isotope ratios in terrestrial and marine sediments along a hyperarid-to-humid gradient
Fractionation of stable carbon isotopes during microbial propionate consumption in anoxic rice paddy soils
Sources and sinks of carbonyl sulfide inferred from tower and mobile atmospheric observations in the Netherlands
Downpour dynamics: outsized impacts of storm events on unprocessed atmospheric nitrate export in an urban watershed
The hidden role of dissolved organic carbon in the biogeochemical cycle of carbon in modern redox-stratified lakes
Biogeochemical processes captured by carbon isotopes in redox-stratified water columns: a comparative study of four modern stratified lakes along an alkalinity gradient
Partitioning of carbon export in the euphotic zone of the oligotrophic South China Sea
Determination of respiration and photosynthesis fractionation factors for atmospheric dioxygen inferred from a vegetation–soil–atmosphere analogue of the terrestrial biosphere in closed chambers
Permafrost degradation and nitrogen cycling in Arctic rivers: insights from stable nitrogen isotope studies
Neodymium budget in the Mediterranean Sea: evaluating the role of atmospheric dusts using a high-resolution dynamical-biogeochemical model
Nitrate isotope investigations reveal future impacts of climate change on nitrogen inputs and cycling in Arctic fjords: Kongsfjorden and Rijpfjorden (Svalbard)
Mineralization of autochthonous particulate organic carbon is a fast channel of organic matter turnover in Germany's largest drinking water reservoir
Carbon isotopic ratios of modern C3 and C4 vegetation on the Indian peninsula and changes along the plant–soil–river continuum – implications for vegetation reconstructions
Controls on nitrite oxidation in the upper Southern Ocean: insights from winter kinetics experiments in the Indian sector
Tracing the source of nitrate in a forested stream showing elevated concentrations during storm events
Intra-skeletal variability in phosphate oxygen isotope composition reveals regional heterothermies in marine vertebrates
Isotopic differences in soil–plant–atmosphere continuum composition and control factors of different vegetation zones on the northern slope of the Qilian Mountains
An analysis of the variability in δ13C in macroalgae from the Gulf of California: indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation
Summertime productivity and carbon export potential in the Weddell Sea, with a focus on the waters adjacent to Larsen C Ice Shelf
Particulate biogenic barium tracer of mesopelagic carbon remineralization in the Mediterranean Sea (PEACETIME project)
Hydrogen and carbon isotope fractionation factors of aerobic methane oxidation in deep-sea water
Host-influenced geochemical signature in the parasitic foraminifera Hyrrokkin sarcophaga
Comparing modified substrate-induced respiration with selective inhibition (SIRIN) and N2O isotope approaches to estimate fungal contribution to denitrification in three arable soils under anoxic conditions
How are oxygen budgets influenced by dissolved iron and growth of oxygenic phototrophs in an iron-rich spring system? Initial results from the Espan Spring in Fürth, Germany
Stable isotope ratios in seawater nitrate reflect the influence of Pacific water along the northwest Atlantic margin
High-resolution 14C bomb peak dating and climate response analyses of subseasonal stable isotope signals in wood of the African baobab – a case study from Oman
Geographic variability in freshwater methane hydrogen isotope ratios and its implications for global isotopic source signatures
Seasonality of nitrogen sources, cycling, and loading in a New England river discerned from nitrate isotope ratios
Evaluating the response of δ13C in Haloxylon ammodendron, a dominant C4 species in Asian desert ecosystems, to water and nitrogen addition as well as the availability of its δ13C as an indicator of water use efficiency
Modern silicon dynamics of a small high-latitude subarctic lake
Radium-228-derived ocean mixing and trace element inputs in the South Atlantic
Nitrogen isotopic fractionations during nitric oxide production in an agricultural soil
Silicon uptake and isotope fractionation dynamics by crop species
Barium stable isotopes as a fingerprint of biological cycling in the Amazon River basin
Bottomland hardwood forest growth and stress response to hydroclimatic variation: evidence from dendrochronology and tree ring Δ13C values
N2O isotope approaches for source partitioning of N2O production and estimation of N2O reduction – validation with the 15N gas-flux method in laboratory and field studies
Technical note: Single-shell δ11B analysis of Cibicidoides wuellerstorfi using femtosecond laser ablation MC-ICPMS and secondary ion mass spectrometry
Biogeochemical evidence of anaerobic methane oxidation and anaerobic ammonium oxidation in a stratified lake using stable isotopes
Effects of 238U variability and physical transport on water column 234Th downward fluxes in the coastal upwelling system off Peru
Do degree and rate of silicate weathering depend on plant productivity?
Alpine Holocene tree-ring dataset: age-related trends in the stable isotopes of cellulose show species-specific patterns
Susann Henkel, Bo Liu, Michael Staubwasser, Simone A. Kasemann, Anette Meixner, David A. Aromokeye, Michael W. Friedrich, and Sabine Kasten
Biogeosciences, 22, 1673–1696, https://doi.org/10.5194/bg-22-1673-2025, https://doi.org/10.5194/bg-22-1673-2025, 2025
Short summary
Short summary
We intend to unravel iron (Fe) reduction pathways in high-deposition methanic sediments because pools of Fe minerals could stimulate methane oxidation and also generation. Our data from the North Sea show that Fe release takes place mechanistically differently to Fe reduction in shallow sediments, which typically fractionates Fe isotopes. We conclude that fermentation of organic matter involving interspecies electron transfer, partly through conductive Fe oxides, could play an important role.
Ingrid Chanca, Ingeborg Levin, Susan Trumbore, Kita Macario, Jost Lavric, Carlos Alberto Quesada, Alessandro Carioca de Araújo, Cléo Quaresma Dias Júnior, Hella van Asperen, Samuel Hammer, and Carlos A. Sierra
Biogeosciences, 22, 455–472, https://doi.org/10.5194/bg-22-455-2025, https://doi.org/10.5194/bg-22-455-2025, 2025
Short summary
Short summary
Assessing the net carbon (C) budget of the Amazon entails considering the magnitude and timing of C absorption and losses through respiration (transit time of C). Radiocarbon-based estimates of the transit time of C in the Amazon Tall Tower Observatory (ATTO) suggest a change in the transit time from 6 ± 2 years and 18 ± 4 years within 2 years (October 2019 and December 2021, respectively). This variability indicates that only a fraction of newly fixed C can be stored for decades or longer.
Fortunat Joos, Sebastian Lienert, and Sönke Zaehle
Biogeosciences, 22, 19–39, https://doi.org/10.5194/bg-22-19-2025, https://doi.org/10.5194/bg-22-19-2025, 2025
Short summary
Short summary
How plants regulate their exchange of CO2 and water with the atmosphere under global warming is critical for their carbon uptake and their cooling influence. We analyze the isotope ratio of atmospheric CO2 and detect no significant decadal trends in the seasonal cycle amplitude. The data are consistent with the regulation towards leaf CO2 and intrinsic water use efficiency growing proportionally to atmospheric CO2, in contrast to recent suggestions of downregulation of CO2 and water fluxes.
Aymeric Pierre Marie Servettaz, Yuta Isaji, Chisato Yoshikawa, Yanghee Jang, Boo-Keun Khim, Yeongjun Ryu, Daniel M. Sigman, Nanako O. Ogawa, Francisco J. Jiménez-Espejo, and Naohiko Ohkouchi
EGUsphere, https://doi.org/10.5194/egusphere-2024-3687, https://doi.org/10.5194/egusphere-2024-3687, 2024
Short summary
Short summary
Phytoplankton blooms occur after sea ice retreats in the Southern Ocean. In this study we investigate the influence of seasonal cycle of sea ice concentration on nitrate depletion, testing the hypothesis that meltwater release stabilizes the water column and favors nutrient utilization. We find that, at a regional scale, nitrate depletion and vertical mixing are weakly correlated with sea ice cycle. Nitrate depletion is rather linked to other oceanographic processes controlling mixing depth.
Stanislav Jabinski, Vítězslav Kučera, Marek Kopáček, Jan Jansa, and Travis B. Meador
EGUsphere, https://doi.org/10.5194/egusphere-2024-3153, https://doi.org/10.5194/egusphere-2024-3153, 2024
Short summary
Short summary
Microbial production is a key parameter in estimations of organic matter cycling in environmental systems, and fungi play a major role as decomposers. In order to investigate fungal production and turnover times in soils, we incubated fungal pure cultures with isotopically labelled water and bicarbonate to investigate growth signals encoded into lipid biomarkers, which can be applied to improve flux estimates in environmental studies.
Weitian Ding, Urumu Tsunogai, and Fumiko Nakagawa
Biogeosciences, 21, 4717–4722, https://doi.org/10.5194/bg-21-4717-2024, https://doi.org/10.5194/bg-21-4717-2024, 2024
Short summary
Short summary
Past studies have used the Δ17O of stream nitrate to estimate the gross nitrification rates (GNRs) in each forested catchment by approximating the Δ17O value of soil nitrate to be equal to that of stream nitrate. Based on inference and calculation of measured data, we found that this approximation resulted in an overestimated GNR. Therefore, it is essential to clarify and verify the Δ17O NO3− values in forested soils and streams before applying the Δ17O values of stream NO3− to GNR estimation.
Elise D. Rivett, Wenjuan Ma, Nathaniel E. Ostrom, and Eric L. Hegg
Biogeosciences, 21, 4549–4567, https://doi.org/10.5194/bg-21-4549-2024, https://doi.org/10.5194/bg-21-4549-2024, 2024
Short summary
Short summary
Many different processes produce nitrous oxide (N2O), a potent greenhouse gas. Measuring the ratio of heavy and light nitrogen isotopes (15N/14N) for the non-exchangeable central and outer N atoms of N2O helps to distinguish sources of N2O. To accurately calculate the position-specific isotopic preference, we developed an expansion of the widely used Rayleigh model. Application of our new model to simulated and experimental data demonstrates its improved accuracy for analyzing N2O synthesis.
Eliza Harris, Philipp Fischer, Maciej P. Lewicki, Dominika Lewicka-Szczebak, Stephen J. Harris, and Fernando Perez-Cruz
Biogeosciences, 21, 3641–3663, https://doi.org/10.5194/bg-21-3641-2024, https://doi.org/10.5194/bg-21-3641-2024, 2024
Short summary
Short summary
Greenhouse gases are produced and consumed via a number of pathways. Quantifying these pathways helps reduce the climate and environmental footprint of anthropogenic activities. The contribution of the pathways can be estimated from the isotopic composition, which acts as a fingerprint for these pathways. We have developed the Time-resolved FRactionation And Mixing Evaluation (TimeFRAME) model to simplify interpretation and estimate the contribution of different pathways and their uncertainty.
Kim A. P. Faassen, Jordi Vilà-Guerau de Arellano, Raquel González-Armas, Bert G. Heusinkveld, Ivan Mammarella, Wouter Peters, and Ingrid T. Luijkx
Biogeosciences, 21, 3015–3039, https://doi.org/10.5194/bg-21-3015-2024, https://doi.org/10.5194/bg-21-3015-2024, 2024
Short summary
Short summary
The ratio between atmospheric O2 and CO2 can be used to characterize the carbon balance at the surface. By combining a model and observations from the Hyytiälä forest (Finland), we show that using atmospheric O2 and CO2 measurements from a single height provides a weak constraint on the surface CO2 exchange because large-scale processes such as entrainment confound this signal. We therefore recommend always using multiple heights of O2 and CO2 measurements to study surface CO2 exchange.
Nestor Gaviria-Lugo, Charlotte Läuchli, Hella Wittmann, Anne Bernhardt, Patrick Frings, Mahyar Mohtadi, Oliver Rach, and Dirk Sachse
Biogeosciences, 20, 4433–4453, https://doi.org/10.5194/bg-20-4433-2023, https://doi.org/10.5194/bg-20-4433-2023, 2023
Short summary
Short summary
We analyzed how leaf wax hydrogen isotopes in continental and marine sediments respond to climate along one of the strongest aridity gradients in the world, from hyperarid to humid, along Chile. We found that under extreme aridity, the relationship between hydrogen isotopes in waxes and climate is non-linear, suggesting that we should be careful when reconstructing past hydrological changes using leaf wax hydrogen isotopes so as to avoid overestimating how much the climate has changed.
Ralf Conrad and Peter Claus
Biogeosciences, 20, 3625–3635, https://doi.org/10.5194/bg-20-3625-2023, https://doi.org/10.5194/bg-20-3625-2023, 2023
Short summary
Short summary
Knowledge of carbon isotope fractionation is important for the assessment of the pathways involved in the degradation of organic matter. Propionate is an important intermediate. In the presence of sulfate, it was degraded by Syntrophobacter species via acetate to CO2. In the absence of sulfate, it was mainly consumed by Smithella and methanogenic archaeal species via butyrate and acetate to CH4. However, stable carbon isotope fractionation during the degradation process was quite small.
Alessandro Zanchetta, Linda M. J. Kooijmans, Steven van Heuven, Andrea Scifo, Hubertus A. Scheeren, Ivan Mammarella, Ute Karstens, Jin Ma, Maarten Krol, and Huilin Chen
Biogeosciences, 20, 3539–3553, https://doi.org/10.5194/bg-20-3539-2023, https://doi.org/10.5194/bg-20-3539-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) has been suggested as a tool to estimate carbon dioxide (CO2) uptake by plants during photosynthesis. However, understanding its sources and sinks is critical to preventing biases in this estimate. Combining observations and models, this study proves that regional sources occasionally influence the measurements at the 60 m tall Lutjewad tower (1 m a.s.l.; 53°24′ N, 6°21′ E) in the Netherlands. Moreover, it estimates nighttime COS fluxes to be −3.0 ± 2.6 pmol m−2 s−1.
Joel T. Bostic, David M. Nelson, and Keith N. Eshleman
Biogeosciences, 20, 2485–2498, https://doi.org/10.5194/bg-20-2485-2023, https://doi.org/10.5194/bg-20-2485-2023, 2023
Short summary
Short summary
Land-use changes can affect water quality. We used tracers of pollution sources and water flow paths to show that an urban watershed exports variable sources during storm events relative to a less developed watershed. Our results imply that changing precipitation patterns combined with increasing urbanization may alter sources of pollution in the future.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2405–2424, https://doi.org/10.5194/bg-20-2405-2023, https://doi.org/10.5194/bg-20-2405-2023, 2023
Short summary
Short summary
Dissolved organic carbon (DOC) is a reservoir of prime importance in the C cycle of both continental and marine systems. It has also been suggested to influence the past Earth climate but is still poorly characterized in ancient-Earth-like environments. In this paper we show how DOC analyses from modern redox-stratified lakes can evidence specific metabolic reactions and environmental factors and how these can help us to interpret the C cycle of specific periods in the Earth's past.
Robin Havas, Christophe Thomazo, Miguel Iniesto, Didier Jézéquel, David Moreira, Rosaluz Tavera, Jeanne Caumartin, Elodie Muller, Purificación López-García, and Karim Benzerara
Biogeosciences, 20, 2347–2367, https://doi.org/10.5194/bg-20-2347-2023, https://doi.org/10.5194/bg-20-2347-2023, 2023
Short summary
Short summary
We describe the C cycle of four modern stratified water bodies from Mexico, a necessary step to better understand the C cycle of primitive-Earth-like environments, which were dominated by these kinds of conditions. We highlight the importance of local external factors on the C cycle of these systems. Notably, they influence the sensitivity of the carbonate record to environmental changes. We also show the strong C-cycle variability among these lakes and their organic C sediment record.
Yifan Ma, Kuanbo Zhou, Weifang Chen, Junhui Chen, Jin-Yu Terence Yang, and Minhan Dai
Biogeosciences, 20, 2013–2030, https://doi.org/10.5194/bg-20-2013-2023, https://doi.org/10.5194/bg-20-2013-2023, 2023
Short summary
Short summary
We distinguished particulate organic carbon (POC) export fluxes out of the nutrient-depleted layer (NDL) and the euphotic zone. The amount of POC export flux at the NDL base suggests that the NDL could be a hotspot of particle export. The substantial POC export flux at the NDL base challenges traditional concepts that the NDL was limited in terms of POC export. The dominant nutrient source for POC export fluxes should be subsurface nutrients, which was determined by 15N isotopic mass balance.
Clémence Paul, Clément Piel, Joana Sauze, Nicolas Pasquier, Frédéric Prié, Sébastien Devidal, Roxanne Jacob, Arnaud Dapoigny, Olivier Jossoud, Alexandru Milcu, and Amaëlle Landais
Biogeosciences, 20, 1047–1062, https://doi.org/10.5194/bg-20-1047-2023, https://doi.org/10.5194/bg-20-1047-2023, 2023
Short summary
Short summary
To improve the interpretation of the δ18Oatm and Δ17O of O2 in air bubbles in ice cores, we need to better quantify the oxygen fractionation coefficients associated with biological processes. We performed a simplified analogue of the terrestrial biosphere in a closed chamber. We found a respiration fractionation in agreement with the previous estimates at the microorganism scale, and a terrestrial photosynthetic fractionation was found. This has an impact on the estimation of the Dole effect.
Adam Francis, Raja S. Ganeshram, Robyn E. Tuerena, Robert G. M. Spencer, Robert M. Holmes, Jennifer A. Rogers, and Claire Mahaffey
Biogeosciences, 20, 365–382, https://doi.org/10.5194/bg-20-365-2023, https://doi.org/10.5194/bg-20-365-2023, 2023
Short summary
Short summary
Climate change is causing extensive permafrost degradation and nutrient releases into rivers with great ecological impacts on the Arctic Ocean. We focused on nitrogen (N) release from this degradation and associated cycling using N isotopes, an understudied area. Many N species are released at degradation sites with exchanges between species. N inputs from permafrost degradation and seasonal river N trends were identified using isotopes, helping to predict climate change impacts.
Mohamed Ayache, Jean-Claude Dutay, Kazuyo Tachikawa, Thomas Arsouze, and Catherine Jeandel
Biogeosciences, 20, 205–227, https://doi.org/10.5194/bg-20-205-2023, https://doi.org/10.5194/bg-20-205-2023, 2023
Short summary
Short summary
The neodymium (Nd) is one of the most useful tracers to fingerprint water mass provenance. However, the use of Nd is hampered by the lack of adequate quantification of the external sources. Here, we present the first simulation of dissolved Nd concentration and Nd isotopic composition in the Mediterranean Sea using a high-resolution model. We aim to better understand how the various external sources affect the Nd cycle and particularly assess how it is impacted by atmospheric inputs.
Marta Santos-Garcia, Raja S. Ganeshram, Robyn E. Tuerena, Margot C. F. Debyser, Katrine Husum, Philipp Assmy, and Haakon Hop
Biogeosciences, 19, 5973–6002, https://doi.org/10.5194/bg-19-5973-2022, https://doi.org/10.5194/bg-19-5973-2022, 2022
Short summary
Short summary
Terrestrial sources of nitrate are important contributors to the nutrient pool in the fjords of Kongsfjorden and Rijpfjorden in Svalbard during the summer, and they sustain most of the fjord primary productivity. Ongoing tidewater glacier retreat is postulated to favour light limitation and less dynamic circulation in fjords. This is suggested to encourage the export of nutrients to the middle and outer part of the fjord system, which may enhance primary production within and in offshore areas.
Marlene Dordoni, Michael Seewald, Karsten Rinke, Kurt Friese, Robert van Geldern, Jakob Schmidmeier, and Johannes A. C. Barth
Biogeosciences, 19, 5343–5355, https://doi.org/10.5194/bg-19-5343-2022, https://doi.org/10.5194/bg-19-5343-2022, 2022
Short summary
Short summary
Organic matter (OM) turnover into dissolved inorganic carbon (DIC) was investigated by means of carbon isotope mass balances in Germany's largest water reservoir. This includes a metalimnetic oxygen minimum (MOM). Autochthonous particulate organic carbon (POC) was the main contributor to DIC, with rates that were highest for the MOM. Generally low turnover rates outline the environmental fragility of this water body in the case that OM loads increase due to storm events or land use changes.
Frédérique M. S. A. Kirkels, Hugo J. de Boer, Paulina Concha Hernández, Chris R. T. Martes, Marcel T. J. van der Meer, Sayak Basu, Muhammed O. Usman, and Francien Peterse
Biogeosciences, 19, 4107–4127, https://doi.org/10.5194/bg-19-4107-2022, https://doi.org/10.5194/bg-19-4107-2022, 2022
Short summary
Short summary
The distinct carbon isotopic values of C3 and C4 plants are widely used to reconstruct past hydroclimate, where more C3 plants reflect wetter and C4 plants drier conditions. Here we examine the impact of regional hydroclimatic conditions on plant isotopic values in the Godavari River basin, India. We find that it is crucial to identify regional plant isotopic values and consider drought stress, which introduces a bias in C3 / C4 plant estimates and associated hydroclimate reconstructions.
Mhlangabezi Mdutyana, Tanya Marshall, Xin Sun, Jessica M. Burger, Sandy J. Thomalla, Bess B. Ward, and Sarah E. Fawcett
Biogeosciences, 19, 3425–3444, https://doi.org/10.5194/bg-19-3425-2022, https://doi.org/10.5194/bg-19-3425-2022, 2022
Short summary
Short summary
Nitrite-oxidizing bacteria in the winter Southern Ocean show a high affinity for nitrite but require a minimum (i.e., "threshold") concentration before they increase their rates of nitrite oxidation significantly. The classic Michaelis–Menten model thus cannot be used to derive the kinetic parameters, so a modified equation was employed that also yields the threshold nitrite concentration. Dissolved iron availability may play an important role in limiting nitrite oxidation.
Weitian Ding, Urumu Tsunogai, Fumiko Nakagawa, Takashi Sambuichi, Hiroyuki Sase, Masayuki Morohashi, and Hiroki Yotsuyanagi
Biogeosciences, 19, 3247–3261, https://doi.org/10.5194/bg-19-3247-2022, https://doi.org/10.5194/bg-19-3247-2022, 2022
Short summary
Short summary
Excessive leaching of nitrate from forested catchments during storm events degrades water quality and causes eutrophication in downstream areas. Thus, tracing the source of nitrate increase during storm events in forested streams is important for sustainable forest management. Based on the isotopic compositions of stream nitrate, including Δ17O, this study clarifies that the source of stream nitrate increase during storm events was soil nitrate in the riparian zone.
Nicolas Séon, Romain Amiot, Guillaume Suan, Christophe Lécuyer, François Fourel, Fabien Demaret, Arnauld Vinçon-Laugier, Sylvain Charbonnier, and Peggy Vincent
Biogeosciences, 19, 2671–2681, https://doi.org/10.5194/bg-19-2671-2022, https://doi.org/10.5194/bg-19-2671-2022, 2022
Short summary
Short summary
We analysed the oxygen isotope composition of bones and teeth of four marine species possessing regional heterothermies. We observed a consistent link between oxygen isotope composition and temperature heterogeneities recorded by classical methods. This opens up new perspectives on the determination of the thermoregulatory strategies of extant marine vertebrates where conventional methods are difficult to apply, but also allows us to investigate thermophysiologies of extinct vertebrates.
Yuwei Liu, Guofeng Zhu, Zhuanxia Zhang, Zhigang Sun, Leilei Yong, Liyuan Sang, Lei Wang, and Kailiang Zhao
Biogeosciences, 19, 877–889, https://doi.org/10.5194/bg-19-877-2022, https://doi.org/10.5194/bg-19-877-2022, 2022
Short summary
Short summary
We took the water cycle process of soil–plant–atmospheric precipitation as the research objective. In the water cycle of soil–plant–atmospheric precipitation, precipitation plays the main controlling role. The main source of replenishment for alpine meadow plants is precipitation and alpine meltwater; the main source of replenishment for forest plants is soil water; and the plants in the arid foothills mainly use groundwater.
Roberto Velázquez-Ochoa, María Julia Ochoa-Izaguirre, and Martín Federico Soto-Jiménez
Biogeosciences, 19, 1–27, https://doi.org/10.5194/bg-19-1-2022, https://doi.org/10.5194/bg-19-1-2022, 2022
Short summary
Short summary
Our research is the first approximation to understand the δ13C macroalgal variability in one of the most diverse marine ecosystems in the world, the Gulf of California. The life-form is the principal cause of δ13C macroalgal variability, mainly taxonomy. However, changes in habitat characteristics and environmental conditions also influence the δ13C macroalgal variability. The δ13C macroalgae is indicative of carbon concentration mechanisms and isotope discrimination during carbon assimilation.
Raquel F. Flynn, Thomas G. Bornman, Jessica M. Burger, Shantelle Smith, Kurt A. M. Spence, and Sarah E. Fawcett
Biogeosciences, 18, 6031–6059, https://doi.org/10.5194/bg-18-6031-2021, https://doi.org/10.5194/bg-18-6031-2021, 2021
Short summary
Short summary
Biological activity in the shallow Weddell Sea affects the biogeochemistry of recently formed deep waters. To investigate the drivers of carbon and nutrient export, we measured rates of primary production and nitrogen uptake, characterized the phytoplankton community, and estimated nutrient depletion ratios across the under-sampled western Weddell Sea in mid-summer. Carbon export was highest at the ice shelves and was determined by a combination of physical, chemical, and biological factors.
Stéphanie H. M. Jacquet, Christian Tamburini, Marc Garel, Aurélie Dufour, France Van Vambeke, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 5891–5902, https://doi.org/10.5194/bg-18-5891-2021, https://doi.org/10.5194/bg-18-5891-2021, 2021
Short summary
Short summary
We compared carbon remineralization rates (MRs) in the western and central Mediterranean Sea in late spring during the PEACETIME cruise, as assessed using the barium tracer. We reported higher and deeper (up to 1000 m depth) MRs in the western basin, potentially sustained by an additional particle export event driven by deep convection. The central basin is the site of a mosaic of blooming and non-blooming water masses and showed lower MRs that were restricted to the upper mesopelagic layer.
Shinsuke Kawagucci, Yohei Matsui, Akiko Makabe, Tatsuhiro Fukuba, Yuji Onishi, Takuro Nunoura, and Taichi Yokokawa
Biogeosciences, 18, 5351–5362, https://doi.org/10.5194/bg-18-5351-2021, https://doi.org/10.5194/bg-18-5351-2021, 2021
Short summary
Short summary
Hydrogen and carbon isotope ratios of methane as well as the relevant biogeochemical parameters and microbial community compositions in hydrothermal plumes in the Okinawa Trough were observed. We succeeded in simultaneously determining hydrogen and carbon isotope fractionation factors associated with aerobic oxidation of methane in seawater (εH = 49.4 ± 5.0 ‰, εC = 5.2 ± 0.4 ‰) – the former being the first of its kind ever reported.
Nicolai Schleinkofer, David Evans, Max Wisshak, Janina Vanessa Büscher, Jens Fiebig, André Freiwald, Sven Härter, Horst R. Marschall, Silke Voigt, and Jacek Raddatz
Biogeosciences, 18, 4733–4753, https://doi.org/10.5194/bg-18-4733-2021, https://doi.org/10.5194/bg-18-4733-2021, 2021
Short summary
Short summary
We have measured the chemical composition of the carbonate shells of the parasitic foraminifera Hyrrokkin sarcophaga in order to test if it is influenced by the host organism (bivalve or coral). We find that both the chemical and isotopic composition is influenced by the host organism. For example strontium is enriched in foraminifera that grew on corals, whose skeleton is built from aragonite, which is naturally enriched in strontium compared to the bivalves' calcite shell.
Lena Rohe, Traute-Heidi Anderson, Heinz Flessa, Anette Goeske, Dominika Lewicka-Szczebak, Nicole Wrage-Mönnig, and Reinhard Well
Biogeosciences, 18, 4629–4650, https://doi.org/10.5194/bg-18-4629-2021, https://doi.org/10.5194/bg-18-4629-2021, 2021
Short summary
Short summary
This is the first experimental setup combining a complex set of methods (microbial inhibitors and isotopic approaches) to differentiate between N2O produced by fungi or bacteria during denitrification in three soils. Quantifying the fungal fraction with inhibitors was not successful due to large amounts of uninhibited N2O production. All successful methods suggested a small or missing fungal contribution. Artefacts occurring with microbial inhibition to determine N2O fluxes are discussed.
Inga Köhler, Raul E. Martinez, David Piatka, Achim J. Herrmann, Arianna Gallo, Michelle M. Gehringer, and Johannes A. C. Barth
Biogeosciences, 18, 4535–4548, https://doi.org/10.5194/bg-18-4535-2021, https://doi.org/10.5194/bg-18-4535-2021, 2021
Short summary
Short summary
We investigated how high Fe(II) levels influence the O2 budget of a circum-neutral Fe(II)-rich spring and if a combined study of dissolved O (DO) and its isotopic composition can help assess this effect. We showed that dissolved Fe(II) can exert strong effects on the δ18ODO even though a constant supply of atmospheric O2 occurs. In the presence of photosynthesis, direct effects of Fe oxidation become masked. Critical Fe(II) concentrations indirectly control the DO by enhancing photosynthesis.
Owen A. Sherwood, Samuel H. Davin, Nadine Lehmann, Carolyn Buchwald, Evan N. Edinger, Moritz F. Lehmann, and Markus Kienast
Biogeosciences, 18, 4491–4510, https://doi.org/10.5194/bg-18-4491-2021, https://doi.org/10.5194/bg-18-4491-2021, 2021
Short summary
Short summary
Pacific water flowing eastward through the Canadian Arctic plays an important role in redistributing nutrients to the northwest Atlantic Ocean. Using samples collected from northern Baffin Bay to the southern Labrador Shelf, we show that stable isotopic ratios in seawater nitrate reflect the fraction of Pacific to Atlantic water. These results provide a new framework for interpreting patterns of nitrogen isotopic variability recorded in modern and archival organic materials in the region.
Franziska Slotta, Lukas Wacker, Frank Riedel, Karl-Uwe Heußner, Kai Hartmann, and Gerhard Helle
Biogeosciences, 18, 3539–3564, https://doi.org/10.5194/bg-18-3539-2021, https://doi.org/10.5194/bg-18-3539-2021, 2021
Short summary
Short summary
The African baobab is a challenging climate and environmental archive for its semi-arid habitat due to dating uncertainties and parenchyma-rich wood anatomy. Annually resolved F14C data of tree-ring cellulose (1941–2005) from a tree in Oman show the annual character of the baobab’s growth rings but were up to 8.8 % lower than expected for 1964–1967. Subseasonal δ13C and δ18O patterns reveal years with low average monsoon rain as well as heavy rainfall events from pre-monsoonal cyclones.
Peter M. J. Douglas, Emerald Stratigopoulos, Sanga Park, and Dawson Phan
Biogeosciences, 18, 3505–3527, https://doi.org/10.5194/bg-18-3505-2021, https://doi.org/10.5194/bg-18-3505-2021, 2021
Short summary
Short summary
Hydrogen isotopes could be a useful tool to help resolve the geographic distribution of methane emissions from freshwater environments. We analyzed an expanded global dataset of freshwater methane hydrogen isotope ratios and found significant geographic variation linked to water isotopic composition. This geographic variability could be used to resolve changing methane fluxes from freshwater environments and provide more accurate estimates of the relative balance of global methane sources.
Veronica R. Rollinson, Julie Granger, Sydney C. Clark, Mackenzie L. Blanusa, Claudia P. Koerting, Jamie M. P. Vaudrey, Lija A. Treibergs, Holly C. Westbrook, Catherine M. Matassa, Meredith G. Hastings, and Craig R. Tobias
Biogeosciences, 18, 3421–3444, https://doi.org/10.5194/bg-18-3421-2021, https://doi.org/10.5194/bg-18-3421-2021, 2021
Short summary
Short summary
We measured nutrients and the naturally occurring nitrogen (N) and oxygen (O) stable isotope ratios of nitrate discharged from a New England river over an annual cycle, to monitor N loading and identify dominant sources from the watershed. We uncovered a seasonality to loading and sources of N from the watershed. Seasonality in the nitrate isotope ratios also informed on N cycling, conforming to theoretical expectations of riverine nutrient cycling.
Zixun Chen, Xuejun Liu, Xiaoqing Cui, Yaowen Han, Guoan Wang, and Jiazhu Li
Biogeosciences, 18, 2859–2870, https://doi.org/10.5194/bg-18-2859-2021, https://doi.org/10.5194/bg-18-2859-2021, 2021
Short summary
Short summary
δ13C in plants is a sensitive long-term indicator of physiological acclimatization. The present study suggests that precipitation change and increasing atmospheric N deposition have little impact on δ13C of H. ammodendron, a dominant plant in central Asian deserts, but affect its gas exchange. In addition, this study shows that δ13C of H. ammodendron could not indicate its water use efficiency (WUE), suggesting that whether δ13C of C4 plants indicates WUE is species-specific.
Petra Zahajská, Carolina Olid, Johanna Stadmark, Sherilyn C. Fritz, Sophie Opfergelt, and Daniel J. Conley
Biogeosciences, 18, 2325–2345, https://doi.org/10.5194/bg-18-2325-2021, https://doi.org/10.5194/bg-18-2325-2021, 2021
Short summary
Short summary
The drivers of high accumulation of single-cell siliceous algae (diatoms) in a high-latitude lake have not been fully characterized before. We studied silicon cycling of the lake through water, radon, silicon, and stable silicon isotope balances. Results showed that groundwater brings 3 times more water and dissolved silica than the stream inlet. We demonstrate that groundwater discharge and low sediment deposition have driven the high diatom accumulation in the studied lake in the past century.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671, https://doi.org/10.5194/bg-18-1645-2021, https://doi.org/10.5194/bg-18-1645-2021, 2021
Short summary
Short summary
The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Zhongjie Yu and Emily M. Elliott
Biogeosciences, 18, 805–829, https://doi.org/10.5194/bg-18-805-2021, https://doi.org/10.5194/bg-18-805-2021, 2021
Short summary
Short summary
In this study, we demonstrated distinct nitrogen isotope effects for nitric oxide (NO) production from major microbial and chemical NO sources in an agricultural soil. These results highlight characteristic bond-forming and breaking mechanisms associated with microbial and chemical NO production and implicate that simultaneous isotopic analyses of NO and nitrous oxide (N2O) can lead to unprecedented insights into the sources and processes controlling NO and N2O emissions from agricultural soils.
Daniel A. Frick, Rainer Remus, Michael Sommer, Jürgen Augustin, Danuta Kaczorek, and Friedhelm von Blanckenburg
Biogeosciences, 17, 6475–6490, https://doi.org/10.5194/bg-17-6475-2020, https://doi.org/10.5194/bg-17-6475-2020, 2020
Short summary
Short summary
Silicon is taken up by some plants to increase structural stability and to develop stress resistance and is rejected by others. To explore the underlying mechanisms, we used the stable isotopes of silicon that shift in their relative abundance depending on the biochemical transformation involved. On species with a rejective (tomato, mustard) and active (wheat) uptake mechanism, grown in hydroculture, we found that the transport of silicic acid is controlled by the precipitation of biogenic opal.
Quentin Charbonnier, Julien Bouchez, Jérôme Gaillardet, and Éric Gayer
Biogeosciences, 17, 5989–6015, https://doi.org/10.5194/bg-17-5989-2020, https://doi.org/10.5194/bg-17-5989-2020, 2020
Short summary
Short summary
The abundance and isotope composition of the trace metal barium (Ba) allows us to track and quantify nutrient cycling throughout the Amazon Basin. In particular, we show that the Ba biological fingerprint evolves from that of a strong net nutrient uptake in the mountainous area of the Andes towards efficient nutrient recycling on the plains of the Lower Amazon. Our study highlights the fact that the geochemical signature of rock-derived nutrients transported by the Amazon is scarred by life.
Ajinkya G. Deshpande, Thomas W. Boutton, Ayumi Hyodo, Charles W. Lafon, and Georgianne W. Moore
Biogeosciences, 17, 5639–5653, https://doi.org/10.5194/bg-17-5639-2020, https://doi.org/10.5194/bg-17-5639-2020, 2020
Short summary
Short summary
Wetland forests in the southern USA are threatened by changing climate and human-induced pressures. We used tree ring widths and C isotopes as indicators of forest growth and physiological stress, respectively, and compared these to past climate data. We observed that vegetation growing in the drier patches is susceptible to stress, while vegetation growth and physiology in wetter patches is less sensitive to unfavorable environmental conditions, highlighting the importance of optimal wetness.
Dominika Lewicka-Szczebak, Maciej Piotr Lewicki, and Reinhard Well
Biogeosciences, 17, 5513–5537, https://doi.org/10.5194/bg-17-5513-2020, https://doi.org/10.5194/bg-17-5513-2020, 2020
Short summary
Short summary
We present the first validation of N2O isotopic approaches for estimating N2O source pathways and N2O reduction. These approaches are widely used for tracing soil nitrogen cycling, but the results of these estimations are very uncertain. Here we report the results from parallel treatments allowing for precise validation of these approaches, and we propose the best strategies for results interpretation, including the new idea of an isotope model integrating three isotopic signatures of N2O.
Markus Raitzsch, Claire Rollion-Bard, Ingo Horn, Grit Steinhoefel, Albert Benthien, Klaus-Uwe Richter, Matthieu Buisson, Pascale Louvat, and Jelle Bijma
Biogeosciences, 17, 5365–5375, https://doi.org/10.5194/bg-17-5365-2020, https://doi.org/10.5194/bg-17-5365-2020, 2020
Short summary
Short summary
The isotopic composition of boron in carbonate shells of marine unicellular organisms is a popular tool to estimate seawater pH. Usually, many shells need to be dissolved and measured for boron isotopes, but the information on their spatial distribution is lost. Here, we investigate two techniques that allow for measuring boron isotopes within single shells and show that they yield robust mean values but provide additional information on the heterogeneity within and between single shells.
Florian Einsiedl, Anja Wunderlich, Mathieu Sebilo, Ömer K. Coskun, William D. Orsi, and Bernhard Mayer
Biogeosciences, 17, 5149–5161, https://doi.org/10.5194/bg-17-5149-2020, https://doi.org/10.5194/bg-17-5149-2020, 2020
Short summary
Short summary
Nitrate pollution of freshwaters and methane emissions into the atmosphere are crucial factors in deteriorating the quality of drinking water and in contributing to global climate change. Here, we report vertical concentration and stable isotope profiles of CH4, NO3-, NO2-, and NH4+ in the water column of Fohnsee (southern Bavaria, Germany) that may indicate linkages between nitrate-dependent anaerobic methane oxidation and the anaerobic oxidation of ammonium.
Ruifang C. Xie, Frédéric A. C. Le Moigne, Insa Rapp, Jan Lüdke, Beat Gasser, Marcus Dengler, Volker Liebetrau, and Eric P. Achterberg
Biogeosciences, 17, 4919–4936, https://doi.org/10.5194/bg-17-4919-2020, https://doi.org/10.5194/bg-17-4919-2020, 2020
Short summary
Short summary
Thorium-234 (234Th) is widely used to study carbon fluxes from the surface ocean to depth. But few studies stress the relevance of oceanic advection and diffusion on the downward 234Th fluxes in nearshore environments. Our study in offshore Peru showed strong temporal variations in both the importance of physical processes on 234Th flux estimates and the oceanic residence time of 234Th, whereas salinity-derived seawater 238U activities accounted for up to 40 % errors in 234Th flux estimates.
Ralf A. Oeser and Friedhelm von Blanckenburg
Biogeosciences, 17, 4883–4917, https://doi.org/10.5194/bg-17-4883-2020, https://doi.org/10.5194/bg-17-4883-2020, 2020
Short summary
Short summary
We present a novel strategy to decipher the relative impact of biogenic and abiotic drivers of weathering. We parameterized the nutrient fluxes in four ecosystems along a climate and vegetation gradient situated on the Chilean Coastal Cordillera. We investigated how nutrient demand by plants drives weathering. We found that the increase in biomass nutrient demand is accommodated by faster nutrient recycling rather than an increase in the weathering–release rates.
Tito Arosio, Malin M. Ziehmer, Kurt Nicolussi, Christian Schlüchter, and Markus Leuenberger
Biogeosciences, 17, 4871–4882, https://doi.org/10.5194/bg-17-4871-2020, https://doi.org/10.5194/bg-17-4871-2020, 2020
Short summary
Short summary
Stable isotopes in tree-ring cellulose are tools for climatic reconstructions, but interpretation is challenging due to nonclimate trends. We analyzed the tree-age trends in tree-ring isotopes of deciduous larch and evergreen cembran pine. Samples covering the whole Holocene were collected at the tree line in the Alps. For cambial ages over 100 years, we prove the absence of age trends in δD, δ18O, and δ13C for both species. For lower cambial ages, trends differ for each isotope and species.
Cited articles
Abraham, W.-R., Hesse, C., and Pelz, O.: Ratios of carbon isotopes in microbial lipids as an indicator of substrate usage, Appl. Environ. Microb., 64, 4202–4209, 1998.
Allison, S. D., Wallenstein, M. D., and Bradford, M. A.: Soil-carbon response to warming dependent on microbial physiology, Nat. Geosci., 3, 336–340, 2010.
Apple, J. K., del Giorgio, P. A., and Kemp, W. M.: Temperature regulation of bacterial production, respiration, and growth efficiency in a temperate salt-marsh estuary, Aquat. Microb. Ecol., 43, 243–254, 2006.
Barbosa, Î. C. R., Köhler, I. H., Auerswald, K., Lüps, P., and Schnyder, H.: Last-century changes of alpine grassland water-use efficiency: a reconstruction through carbon isotope analysis of a time -series of Capra ibex horns, Glob. Change Biol., 16, 1171–1180, 2010.
Bathellier, C., Tcherkez, G., Bligny, R., Gout, E., Cornic, G., and Ghashghaie, J.: Metabolic origin of the δ13C of respired CO2 in roots of Phaseolus vulgaris, New Phytol., 181, 387–399, 2009.
Billings, S.: Soil organic matter dynamics and land use change at a grassland/forest ecotone, Soil Biol. Biochem., 38, 2934–2943, 2006.
Blair, N., Leu, A., Muñoz, E., Olsen, J., Kwong, E., and Des Marais, D.: Carbon isotopic fractionation in heterotrophic microbial metabolism, Appl. Environ. Microb., 50, 996–1001, 1985.
Bowling, D. R., Pataki, D. E., and Randerson, J. T.: Carbon isotopes in terrestrial ecosystem pools and CO2 fluxes, New Phytol., 178, 24–40, 2008.
Brüggemann, N., Gessler, A., Kayler, Z., Keel, S. G., Badeck, F., Barthel, M., Boeckx, P., Buchmann, N., Brugnoli, E., Esperschütz, J., Gavrichkova, O., Ghashghaie, J., Gomez-Casanovas, N., Keitel, C., Knohl, A., Kuptz, D., Palacio, S., Salmon, Y., Uchida, Y., and Bahn, M.: Carbon allocation and carbon isotope fluxes in the plant-soil-atmosphere continuum: a review, Biogeosciences, 8, 3457–3489, https://doi.org/10.5194/bg-8-3457-2011, 2011.
Bull, A. T.: The renaissance of continuous culture in the post-genomics age, J. Ind. Microbiol. Biot., 37, 993–1021, 2010.
Chrzanowski, T. H. and Grover, J. P.: Element content of Pseudomonas fluorescens varies with growth rate and temperature: A replicated chemostat study addressing ecological stoichiometry, Limnol. Oceanogr., 53, 1242–1251, 2008.
Chung, B. H., Cannon, R. Y., and Smith, R. C.: Influence of growth temperature on glucose metabolism of a psychrotrophic strain of Bacillus cereus, Appl. Environ. Microb., 31, 39–45, 1976.
Cleland, W. W.: The use of isotope effects to determine enzyme mechanisms, Arch. Biochem. Biophys., 433, 2–12, 2005.
Cole, J. J., Findlay, S., and Pace, M. L.: Bacterial production in fresh and saltwater ecosystems: a cross-system overview, Mar. Ecol.-Prog. Ser., 43, 1–10, 1988.
Cotner, J. B. and Biddanda, B. A.: Small players, large role: microbial influence on biogeochemical processes in pelagic aquatic ecosystems, Ecosystems, 5, 105–121, 2002.
Cotner, J. B., Makino, W., and Biddanda, B. A.: Temperature affects stoichiometry and biochemical composition of Escherichia coli, Microb. Ecol., 52, 26–33, 2006.
Craig, H. and Gordon, L. I.: Deuterium and 18 oxygen variations in the ocean and the marine atmosphere, in: Proceedings of a conference on stable isotopes in oceanographic studies and paleotemperatures, edited by: Tongiori, E., V. Lischi and sons, Pisa, 1965.
Dawson, P. S. S.: Microbial growth, Dowden, Hutchinson & Ross, Stroudsburg, 1974.
del Giorgio, P. A. and Cole, J. J.: Bacterial growth efficiency in natural aquatic systems, Annu. Rev. Ecol. Syst., 29, 503–541, 1998.
Dijkstra, F. A., Hobbie, S. E., Knops, J. M. H., and Reich, P. B.: Nitrogen stabilization and plant species interact to influence soil carbon stabilization, Ecol. Lett., 7, 1192–1198, 2004.
Dijkstra, P., Thomas, S. C., Heinrich, P. L., Koch, G. W., Schwartz, E., and Hungate, B. A.: Effect of temperature on metabolic activity of intact microbial communities: evidence for altered metabolic pathway activity but not for increased maintenance respiration and reduced carbon use efficiency, Soil Biol. Biochem., 43, 2023–2031, 2011.
Egli, T.: Microbial growth and physiology: a call for better craftsmanship, Front. Microbiol., 6, 287, https://doi.org/10.3389/fmicb.2015.00287, 2015.
El-Mansi, E. M. T. and Holms, W. H.: Control of carbon flux to acetate excretion during growth of Escherichia coli in batch and continuous cultures, J. General Microbiol., 135, 2875–883, 1989.
Farquhar, G. D., and Richards, R. A.: Isotopic composition of plant carbon correlates with water-use efficiency of wheat genotypes, Aust. J. Plant Physiol., 11, 539–552, 1984.
Farquhar, G. D., O'Leary, M. H., and Berry, J. A.: On the relationship between carbon isotope discrimination and the intercellular carbon dioxide concentration in leaves, Aust. J. Plant Physiol., 9, 121–137, 1982.
Ferenci, T.: Bacterial physiology, regulation and mutational adaptation in a chemostat environment, Adv. Microb. Physiol., 53, 169–230, 2008.
Fernandez, I. and Cadisch, G.: Discrimination against 13C during degradation of simple and complex substrates by two white rot fungi, Rapid Commun. Mass Sp., 17, 2614–2620, 2003.
Frey, S., Lee, J., Melillo, J. M., and Six, J.: The temperature response of soil microbial efficiency and its feedback to climate, Nature Climate Change, 3, 395–398, 2013.
Fry, B.: Stable Isotope Ecology, Springer, New York, 2006.
Gamnitzer, U., Moyes, A. B., Bowling, D. R., and Schnyder, H.: Measuring and modelling the isotopic composition of soil respiration: insights from a grassland tracer experiment, Biogeosciences, 8, 1333–1350, https://doi.org/10.5194/bg-8-1333-2011, 2011.
Ghashghaie, J. and Badeck, F. W.: Opposite carbon isotope discrimination during dark respiration in leaves versus roots – a review, New Phytol., 201, 751–769, 2014.
Gillooly, J. F., Brown, J. H., West, G. B., Savage, V. M., and Charnov, E. L.: Effects of size and temperature on metabolic rate, Science, 293, 2248–2251, 2001.
Gleixner, G. and Schmidt H.-L.: Carbon isotope effects on the Fructose-1,6-bisphosphate aldolase reaction, origin for non-statistical 13C distributions in carbohydrates, J. Biol. Chem., 272, 5382–5387, 1997.
Goldman, J. C. and Dennet, M. R.: Growth of marine bacteria in batch and continuous culture under carbon and nitrogen limitation, Limnol. Oceanogr., 45, 789–800, 2000.
Hall, E. K., Neuhauser, C., and Cotner, J. B.: Toward a mechanistic understanding of how natural bacterial communities respond to changes in temperature in aquatic ecosystems, ISME J., 2, 471–481, 2008.
Hanson, P. J., Edwards, N. T., Garten, C. T., and Andrews, J. A.: Separating root and microbial contributions to soil respiration: a review of methods and observations, Biogeochemistry, 48, 115–146, 2000.
Hedges, J. I., Eglinton, G., Hatcher, P. G., Kirchman, D. L., Arnosti, C., Derenne, S., Evershed, R. P., Kögel-Knabner, I., de Leeuw, J. W., Littke, R., Michaelis, W., and Rullkötter, J.: The molecularly-uncharacterized component of nonliving organic matter in natural environments, Org. Geochem., 31, 945–958, 2000.
Hobbie, J. E. and Hobbie, E. A.: Microbes in nature are limited by carbon and energy: the starving-survival lifestyle in soil and consequences for estimating microbial rates, Front. Microbiol., 4, 324, https://doi.org/10.3389/fmicb.2013.00324, 2013.
Kayser, A., Weber, J., Hecht, V., and Rinas, U.: Metabolic flux analysis of Escherichia coli in glucose-limited continuous culture. I. Growth-rate dependent metabolic efficiency at steady-state, Microbiology, 151, 693–706, 2005.
Kirschbaum, M. U. F.: The temperature-dependence of organic-matter decomposition – still a topic of debate, Soil Biol. Biochem., 38, 2510–2518, 2006.
Klumpp, K., Schäufele, R., Lötscher, M., Lattanzi, F. A., Feneis, W., and Schnyder, H.: C-isotope composition of CO2 respired by shoots and roots: fractionation during dark respiration?, Plant Cell Environ., 28, 241–250, 2005.
Kucera, C. L. and Kirkham, D. R.: Soil respiration studies in tallgrass prairie in Missouri, Ecology, 52, 912–915, 1971.
Lehmeier, C. A., Min, K., Niehues, N. D., Ballantyne IV, F., and Billings, S. A.: Temperature-mediated changes of exoenzyme-substrate reaction rates and their consequences for the carbon to nitrogen flow ration of liberated resources, Soil Biol. Biochem., 57, 374–382, 2013.
Manzoni, S., Taylor, P., Richter, A., Porporato, A., and Ågren, G. I.: Environmental and stoichiometric controls on microbial carbon-use efficiency in soils, New Phytol., 196, 79–91, 2012.
Min, K., Lehmeier, C. A., Ballantyne, F., Tatarko, A., and Billings, S. A.: Differential effects of pH on temperature sensitivity of organic carbon and nitrogen decay, Soil Biol. Biochem., 76, 193–200, 2014.
Mook, W. G., Bommerson, J. C., and Staverman, W. H.: Carbon isotope fractionation between dissolved bicarbonate and gaseous carbon dioxide, Earth Planet. Sc. Lett., 22, 169–176, 1974.
Nanchen, A., Schicker A., and Sauer U.: Nonlinear dependency of intracellular fluxes on growth rate in miniaturized continuous cultures of Escherichia coli, Appl. Environ. Microb., 73, 1164–1172, 2006.
Nickerson, N., Egan, J., and Risk, D.: Iso-FD: A novel method for measuring the isotopic signature of surface flux, Soil Biol. Biochem., 62, 99–106, 2013.
O'Leary, M. H.: Carbon isotope fractionation in plants, Phytochemistry, 20, 553–567, 1981.
Park, R. and Epstein, S.: Metabolic fractionation of C13 & C12 in plants, Plant Physiol., 36, 133–138, 1961.
Pataki, D. E., Ehleringer, J. E., Flanagan, L. B., Yakir, D., Bowling, D. R., Still, C. J., Buchmann, N., Kaplan, J. O., and Berry, J. A.: The application and interpretation of Keeling plots in terrestrial carbon cycle research, Global Biogeochem. Cy., 17, 1022, https://doi.org/10.1029/2001GB001850, 2003.
Pomeroy, L. R. and Wiebe, W. J.: Temperature and substrate as interactive limiting factors for marine heterotrophic bacteria, Aquat. Microb. Ecol., 23, 187–204, 2001.
Rivkin, R. B. and Legendre, L.: Biogenic carbon cycling in the upper ocean: effects of microbial respiration, Science, 291, 2398–2400, 2001.
Rossmann, A., Butzenlechner, M., and Schmidt, H. L.: Evidence for a nonstatistical carbon isotope distribution in natural glucose, Plant Physiol., 96, 609–614, 1991.
Ŝantrůčková, H., Bird, M. I., and Lloyd, J.: Microbial processes and carbon-isotope fractionation in tropical and temperate grassland soils, Funct. Ecol., 14, 108–114, 2000.
Schimel, D. S.: Terrestrial ecosystems and the carbon-cycle, Glob. Change Biol., 1, 77–91, 1995.
Smith, H. L. and Waltman, P. E.: The theory of the chemostat: dynamics of microbial competition, Cambridge University Press, New York, 1995.
Stumm, W. and Morgan, J. J.: Aquatic Chemistry: An introduction emphasizing chemical equilibria in natural waters, John Wiley & Sons, New York, 1981.
Subke, J.-A., Inglima, I., and Cotrufo, M. F.: Trends and methodological impacts in soil CO2 flux partitioning: A metaanalytical review, Glob. Change Biol., 12, 921–943, 2006.
Szaran, J.: Achievement of carbon isotope equilibrium in the system HCO3− (solution) – CO2 (gas), Chem. Geol., 142, 79–86, 1997.
Tcherkez, G., Mahé, A., and Hodges, M.: 12C/13C fractionations in plant primary metabolism, Trends Plant Sci., 16, 499–506, 2012.
Tempest, D. W. and Neijssel, O. M.: Eco-physiological aspects of microbial growth in aerobic nutrient-limited environments, Adv. Microb. Ecol., 2, 105–153, 1978.
Trumbore, S.: Carbon respired by terrestrial ecosystems – recent progress and challenges, Glob. Change Biol., 12, 141–153, 2006.
Tucker, C. L., Bell, J., Pendall, E., and Ogle, K.: Does declining carbon-use efficiency explain thermal acclimation of soil respiration with warming?, Glob. Change Biol., 19, 252–263, 2013.
Vogel, J. C., Grootes, P. M., and Mook, W. G.: Isotopic fractionation between gaseous and dissolved carbon dioxide, Z. Physik, 230, 225–238, 1970.
Werner, C. and Gessler, A.: Diel variations in the carbon isotope composition of respired CO2 and associated carbon sources: a review of dynamics and mechanisms, Biogeosciences, 8, 2437–2459, https://doi.org/10.5194/bg-8-2437-2011, 2011.
Werner, R. A., Buchmann, N., Siegwolf, R. T. W., Kornexl, B. E., and Gessler, A.: Metabolic fluxes, carbon isotope fractionation and respiration – lessons to be learned from plant biochemistry, New Phytol., 191, 10–15, 2011.
Werth, M. and Kuzyakov, Y.: 13C fractionation at the root-microorganisms-soil interface: a review and outlook for partitioning studies, Soil Biol. Biochem., 42, 1372–1384, 2010.
Wieder, W. R., Bonan, G. B., and Allison, S. D.: Global soil carbon projections are improved by modelling microbial processes, Nature Climate Change, 3, 909–912, 2013.
Wittmann, C., Weber, J., Betiku, E., Krömer, J., Böhm, D., and Rinas, U.: Response of fluxome and metabolome to temperature-induced recombinant protein synthesis in Escherichia coli, J. Biotechnol., 132, 375–384, 2007.
Altmetrics
Final-revised paper
Preprint