Articles | Volume 19, issue 2
https://doi.org/10.5194/bg-19-415-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-19-415-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
25 Jan 2022
Research article |
| 25 Jan 2022
| 25 Jan 2022
N2 fixation in the Mediterranean Sea related to the composition of the diazotrophic community and impact of dust under present and future environmental conditions
Céline Ridame
CORRESPONDING AUTHOR
Laboratoire d'Océanographie et du Climat: Expérimentation et Approches Numériques (LOCEAN-IPSL), Sorbonne University, CNRS-IRD-MNHN, 75005 Paris, France
Julie Dinasquet
Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA
Sorbonne University, CNRS, Laboratoire d'Océanographie Microbienne, LOMIC, 66650 Banyuls-sur-Mer, France
Søren Hallstrøm
Marine Biology Section, Department of Biology, University of Copenhagen, 3000 Helsingør, Denmark
Estelle Bigeard
Sorbonne University, CNRS, Station Biologique de Roscoff, UMR 7144 Adaptation et Diversité en Milieu Marin, Roscoff, France
Lasse Riemann
Marine Biology Section, Department of Biology, University of Copenhagen, 3000 Helsingør, Denmark
France Van Wambeke
Aix-Marseille Université, Université de Toulon, CNRS/INSU, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, 13288, Marseille, France
Matthieu Bressac
Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, 06230 Villefranche-sur-Mer, France
Elvira Pulido-Villena
Aix-Marseille Université, Université de Toulon, CNRS/INSU, IRD, Mediterranean Institute of Oceanography (MIO), UM 110, 13288, Marseille, France
Vincent Taillandier
Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, 06230 Villefranche-sur-Mer, France
Fréderic Gazeau
Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, 06230 Villefranche-sur-Mer, France
Antonio Tovar-Sanchez
Department of Ecology and Coastal Management, Institute of Marine Sciences of Andalusia (CSIC), 11510 Puerto Real, Cádiz, Spain
Anne-Claire Baudoux
Sorbonne University, CNRS, Station Biologique de Roscoff, UMR 7144 Adaptation et Diversité en Milieu Marin, Roscoff, France
Cécile Guieu
Sorbonne Université, CNRS, Laboratoire d'Océanographie de Villefranche, LOV, 06230 Villefranche-sur-Mer, France
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Cale A. Miller, Pierre Urrutti, Jean-Pierre Gattuso, Steeve Comeau, Anaïs Lebrun, Samir Alliouane, Robert W. Schlegel, and Frédéric Gazeau
Biogeosciences, 21, 315–333, https://doi.org/10.5194/bg-21-315-2024, https://doi.org/10.5194/bg-21-315-2024, 2024
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This work describes an experimental system that can replicate and manipulate environmental conditions in marine or aquatic systems. Here, we show how the temperature and salinity of seawater delivered from a fjord is manipulated to experimental tanks on land. By constantly monitoring temperature and salinity in each tank via a computer program, the system continuously adjusts automated flow valves to ensure the seawater in each tank matches the targeted experimental conditions.
Nicolas Metzl, Jonathan Fin, Claire Lo Monaco, Claude Mignon, Samir Alliouane, David Antoine, Guillaume Bourdin, Jacqueline Boutin, Yann Bozec, Pascal Conan, Laurent Coppola, Frédéric Diaz, Eric Douville, Xavier Durrieu de Madron, Jean-Pierre Gattuso, Frédéric Gazeau, Melek Golbol, Bruno Lansard, Dominique Lefèvre, Nathalie Lefèvre, Fabien Lombard, Férial Louanchi, Liliane Merlivat, Léa Olivier, Anne Petrenko, Sébastien Petton, Mireille Pujo-Pay, Christophe Rabouille, Gilles Reverdin, Céline Ridame, Aline Tribollet, Vincenzo Vellucci, Thibaut Wagener, and Cathy Wimart-Rousseau
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Zhibo Shao, Yangchun Xu, Hua Wang, Weicheng Luo, Lice Wang, Yuhong Huang, Nona Sheila R. Agawin, Ayaz Ahmed, Mar Benavides, Mikkel Bentzon-Tilia, Ilana Berman-Frank, Hugo Berthelot, Isabelle C. Biegala, Mariana B. Bif, Antonio Bode, Sophie Bonnet, Deborah A. Bronk, Mark V. Brown, Lisa Campbell, Douglas G. Capone, Edward J. Carpenter, Nicolas Cassar, Bonnie X. Chang, Dreux Chappell, Yuh-ling Lee Chen, Matthew J. Church, Francisco M. Cornejo-Castillo, Amália Maria Sacilotto Detoni, Scott C. Doney, Cecile Dupouy, Marta Estrada, Camila Fernandez, Bieito Fernández-Castro, Debany Fonseca-Batista, Rachel A. Foster, Ken Furuya, Nicole Garcia, Kanji Goto, Jesús Gago, Mary R. Gradoville, M. Robert Hamersley, Britt A. Henke, Cora Hörstmann, Amal Jayakumar, Zhibing Jiang, Shuh-Ji Kao, David M. Karl, Leila R. Kittu, Angela N. Knapp, Sanjeev Kumar, Julie LaRoche, Hongbin Liu, Jiaxing Liu, Caroline Lory, Carolin R. Löscher, Emilio Marañón, Lauren F. Messer, Matthew M. Mills, Wiebke Mohr, Pia H. Moisander, Claire Mahaffey, Robert Moore, Beatriz Mouriño-Carballido, Margaret R. Mulholland, Shin-ichiro Nakaoka, Joseph A. Needoba, Eric J. Raes, Eyal Rahav, Teodoro Ramírez-Cárdenas, Christian Furbo Reeder, Lasse Riemann, Virginie Riou, Julie C. Robidart, Vedula V. S. S. Sarma, Takuya Sato, Himanshu Saxena, Corday Selden, Justin R. Seymour, Dalin Shi, Takuhei Shiozaki, Arvind Singh, Rachel E. Sipler, Jun Sun, Koji Suzuki, Kazutaka Takahashi, Yehui Tan, Weiyi Tang, Jean-Éric Tremblay, Kendra Turk-Kubo, Zuozhu Wen, Angelicque E. White, Samuel T. Wilson, Takashi Yoshida, Jonathan P. Zehr, Run Zhang, Yao Zhang, and Ya-Wei Luo
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Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
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Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Flavienne Bruyant, Rémi Amiraux, Marie-Pier Amyot, Philippe Archambault, Lise Artigue, Lucas Barbedo de Freitas, Guislain Bécu, Simon Bélanger, Pascaline Bourgain, Annick Bricaud, Etienne Brouard, Camille Brunet, Tonya Burgers, Danielle Caleb, Katrine Chalut, Hervé Claustre, Véronique Cornet-Barthaux, Pierre Coupel, Marine Cusa, Fanny Cusset, Laeticia Dadaglio, Marty Davelaar, Gabrièle Deslongchamps, Céline Dimier, Julie Dinasquet, Dany Dumont, Brent Else, Igor Eulaers, Joannie Ferland, Gabrielle Filteau, Marie-Hélène Forget, Jérome Fort, Louis Fortier, Martí Galí, Morgane Gallinari, Svend-Erik Garbus, Nicole Garcia, Catherine Gérikas Ribeiro, Colline Gombault, Priscilla Gourvil, Clémence Goyens, Cindy Grant, Pierre-Luc Grondin, Pascal Guillot, Sandrine Hillion, Rachel Hussherr, Fabien Joux, Hannah Joy-Warren, Gabriel Joyal, David Kieber, Augustin Lafond, José Lagunas, Patrick Lajeunesse, Catherine Lalande, Jade Larivière, Florence Le Gall, Karine Leblanc, Mathieu Leblanc, Justine Legras, Keith Lévesque, Kate-M. Lewis, Edouard Leymarie, Aude Leynaert, Thomas Linkowski, Martine Lizotte, Adriana Lopes dos Santos, Claudie Marec, Dominique Marie, Guillaume Massé, Philippe Massicotte, Atsushi Matsuoka, Lisa A. Miller, Sharif Mirshak, Nathalie Morata, Brivaela Moriceau, Philippe-Israël Morin, Simon Morisset, Anders Mosbech, Alfonso Mucci, Gabrielle Nadaï, Christian Nozais, Ingrid Obernosterer, Thimoté Paire, Christos Panagiotopoulos, Marie Parenteau, Noémie Pelletier, Marc Picheral, Bernard Quéguiner, Patrick Raimbault, Joséphine Ras, Eric Rehm, Llúcia Ribot Lacosta, Jean-François Rontani, Blanche Saint-Béat, Julie Sansoulet, Noé Sardet, Catherine Schmechtig, Antoine Sciandra, Richard Sempéré, Caroline Sévigny, Jordan Toullec, Margot Tragin, Jean-Éric Tremblay, Annie-Pier Trottier, Daniel Vaulot, Anda Vladoiu, Lei Xue, Gustavo Yunda-Guarin, and Marcel Babin
Earth Syst. Sci. Data, 14, 4607–4642, https://doi.org/10.5194/essd-14-4607-2022, https://doi.org/10.5194/essd-14-4607-2022, 2022
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This paper presents a dataset acquired during a research cruise held in Baffin Bay in 2016. We observed that the disappearance of sea ice in the Arctic Ocean increases both the length and spatial extent of the phytoplankton growth season. In the future, this will impact the food webs on which the local populations depend for their food supply and fisheries. This dataset will provide insight into quantifying these impacts and help the decision-making process for policymakers.
Nicolas Metzl, Claire Lo Monaco, Coraline Leseurre, Céline Ridame, Jonathan Fin, Claude Mignon, Marion Gehlen, and Thi Tuyet Trang Chau
Biogeosciences, 19, 1451–1468, https://doi.org/10.5194/bg-19-1451-2022, https://doi.org/10.5194/bg-19-1451-2022, 2022
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During an oceanographic cruise conducted in January 2020 in the south-western Indian Ocean, we observed very low CO2 concentrations associated with a strong phytoplankton bloom that occurred south-east of Madagascar. This biological event led to a strong regional CO2 ocean sink not previously observed.
Julie Dinasquet, Estelle Bigeard, Frédéric Gazeau, Farooq Azam, Cécile Guieu, Emilio Marañón, Céline Ridame, France Van Wambeke, Ingrid Obernosterer, and Anne-Claire Baudoux
Biogeosciences, 19, 1303–1319, https://doi.org/10.5194/bg-19-1303-2022, https://doi.org/10.5194/bg-19-1303-2022, 2022
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Saharan dust deposition of nutrients and trace metals is crucial to microbes in the Mediterranean Sea. Here, we tested the response of microbial and viral communities to simulated dust deposition under present and future conditions of temperature and pH. Overall, the effect of the deposition was dependent on the initial microbial assemblage, and future conditions will intensify microbial responses. We observed effects on trophic interactions, cascading all the way down to viral processes.
Karine Desboeufs, Franck Fu, Matthieu Bressac, Antonio Tovar-Sánchez, Sylvain Triquet, Jean-François Doussin, Chiara Giorio, Patrick Chazette, Julie Disnaquet, Anaïs Feron, Paola Formenti, Franck Maisonneuve, Araceli Rodríguez-Romero, Pascal Zapf, François Dulac, and Cécile Guieu
Atmos. Chem. Phys., 22, 2309–2332, https://doi.org/10.5194/acp-22-2309-2022, https://doi.org/10.5194/acp-22-2309-2022, 2022
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This article reports the first concurrent sampling of wet deposition samples and surface seawater and was performed during the PEACETIME cruise in the remote Mediterranean (May–June 2017). Through the chemical composition of trace metals (TMs) in these samples, it emphasizes the decrease of atmospheric metal pollution in this area during the last few decades and the critical role of wet deposition as source of TMs for Mediterranean surface seawater, especially for intense dust deposition events.
Delaney B. Kilgour, Gordon A. Novak, Jon S. Sauer, Alexia N. Moore, Julie Dinasquet, Sarah Amiri, Emily B. Franklin, Kathryn Mayer, Margaux Winter, Clare K. Morris, Tyler Price, Francesca Malfatti, Daniel R. Crocker, Christopher Lee, Christopher D. Cappa, Allen H. Goldstein, Kimberly A. Prather, and Timothy H. Bertram
Atmos. Chem. Phys., 22, 1601–1613, https://doi.org/10.5194/acp-22-1601-2022, https://doi.org/10.5194/acp-22-1601-2022, 2022
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We report measurements of gas-phase volatile organosulfur molecules made during a mesocosm phytoplankton bloom experiment. Dimethyl sulfide (DMS), methanethiol (MeSH), and benzothiazole accounted for on average over 90 % of total gas-phase sulfur emissions. This work focuses on factors controlling the production and emission of DMS and MeSH and the role of non-DMS molecules (such as MeSH and benzothiazole) in secondary sulfate formation in coastal marine environments.
Matthieu Bressac, Thibaut Wagener, Nathalie Leblond, Antonio Tovar-Sánchez, Céline Ridame, Vincent Taillandier, Samuel Albani, Sophie Guasco, Aurélie Dufour, Stéphanie H. M. Jacquet, François Dulac, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 18, 6435–6453, https://doi.org/10.5194/bg-18-6435-2021, https://doi.org/10.5194/bg-18-6435-2021, 2021
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Phytoplankton growth is limited by the availability of iron in about 50 % of the ocean. Atmospheric deposition of desert dust represents a key source of iron. Here, we present direct observations of dust deposition in the Mediterranean Sea. A key finding is that the input of iron from dust primarily occurred in the deep ocean, while previous studies mainly focused on the ocean surface. This new insight will enable us to better represent controls on global marine productivity in models.
Stéphanie H. M. Jacquet, Christian Tamburini, Marc Garel, Aurélie Dufour, France Van Vambeke, Frédéric A. C. Le Moigne, Nagib Bhairy, and Sophie Guasco
Biogeosciences, 18, 5891–5902, https://doi.org/10.5194/bg-18-5891-2021, https://doi.org/10.5194/bg-18-5891-2021, 2021
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We compared carbon remineralization rates (MRs) in the western and central Mediterranean Sea in late spring during the PEACETIME cruise, as assessed using the barium tracer. We reported higher and deeper (up to 1000 m depth) MRs in the western basin, potentially sustained by an additional particle export event driven by deep convection. The central basin is the site of a mosaic of blooming and non-blooming water masses and showed lower MRs that were restricted to the upper mesopelagic layer.
Elvira Pulido-Villena, Karine Desboeufs, Kahina Djaoudi, France Van Wambeke, Stéphanie Barrillon, Andrea Doglioli, Anne Petrenko, Vincent Taillandier, Franck Fu, Tiphanie Gaillard, Sophie Guasco, Sandra Nunige, Sylvain Triquet, and Cécile Guieu
Biogeosciences, 18, 5871–5889, https://doi.org/10.5194/bg-18-5871-2021, https://doi.org/10.5194/bg-18-5871-2021, 2021
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We report on phosphorus dynamics in the surface layer of the Mediterranean Sea. Highly sensitive phosphate measurements revealed vertical gradients above the phosphacline. The relative contribution of diapycnal fluxes to total external supply of phosphate to the mixed layer decreased towards the east, where atmospheric deposition dominated. Taken together, external sources of phosphate contributed little to total supply, which was mainly sustained by enzymatic hydrolysis of organic phosphorus.
France Van Wambeke, Vincent Taillandier, Karine Desboeufs, Elvira Pulido-Villena, Julie Dinasquet, Anja Engel, Emilio Marañón, Céline Ridame, and Cécile Guieu
Biogeosciences, 18, 5699–5717, https://doi.org/10.5194/bg-18-5699-2021, https://doi.org/10.5194/bg-18-5699-2021, 2021
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Simultaneous in situ measurements of (dry and wet) atmospheric deposition and biogeochemical stocks and fluxes in the sunlit waters of the open Mediterranean Sea revealed complex physical and biological processes occurring within the mixed layer. Nitrogen (N) budgets were computed to compare the sources and sinks of N in the mixed layer. The transitory effect observed after a wet dust deposition impacted the microbial food web down to the deep chlorophyll maximum.
Frédéric Gazeau, France Van Wambeke, Emilio Marañón, Maria Pérez-Lorenzo, Samir Alliouane, Christian Stolpe, Thierry Blasco, Nathalie Leblond, Birthe Zäncker, Anja Engel, Barbara Marie, Julie Dinasquet, and Cécile Guieu
Biogeosciences, 18, 5423–5446, https://doi.org/10.5194/bg-18-5423-2021, https://doi.org/10.5194/bg-18-5423-2021, 2021
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Our study shows that the impact of dust deposition on primary production depends on the initial composition and metabolic state of the tested community and is constrained by the amount of nutrients added, to sustain both the fast response of heterotrophic prokaryotes and the delayed one of phytoplankton. Under future environmental conditions, heterotrophic metabolism will be more impacted than primary production, therefore reducing the capacity of surface waters to sequester anthropogenic CO2.
Frédéric Gazeau, Céline Ridame, France Van Wambeke, Samir Alliouane, Christian Stolpe, Jean-Olivier Irisson, Sophie Marro, Jean-Michel Grisoni, Guillaume De Liège, Sandra Nunige, Kahina Djaoudi, Elvira Pulido-Villena, Julie Dinasquet, Ingrid Obernosterer, Philippe Catala, and Cécile Guieu
Biogeosciences, 18, 5011–5034, https://doi.org/10.5194/bg-18-5011-2021, https://doi.org/10.5194/bg-18-5011-2021, 2021
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This paper shows that the impacts of Saharan dust deposition in different Mediterranean basins are as strong as those observed in coastal waters but differed substantially between the three tested stations, differences attributed to variable initial metabolic states. A stronger impact of warming and acidification on mineralization suggests a decreased capacity of Mediterranean surface communities to sequester CO2 following the deposition of atmospheric particles in the coming decades.
Evelyn Freney, Karine Sellegri, Alessia Nicosia, Leah R. Williams, Matteo Rinaldi, Jonathan T. Trueblood, André S. H. Prévôt, Melilotus Thyssen, Gérald Grégori, Nils Haëntjens, Julie Dinasquet, Ingrid Obernosterer, France Van Wambeke, Anja Engel, Birthe Zäncker, Karine Desboeufs, Eija Asmi, Hilkka Timonen, and Cécile Guieu
Atmos. Chem. Phys., 21, 10625–10641, https://doi.org/10.5194/acp-21-10625-2021, https://doi.org/10.5194/acp-21-10625-2021, 2021
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In this work, we present observations of the organic aerosol content in primary sea spray aerosols (SSAs) continuously generated along a 5-week cruise in the Mediterranean. This information is combined with seawater biogeochemical properties also measured continuously along the ship track to develop a number of parametrizations that can be used in models to determine SSA organic content in oligotrophic waters that represent 60 % of the oceans from commonly measured seawater variables.
Charlotte M. Beall, Jennifer M. Michaud, Meredith A. Fish, Julie Dinasquet, Gavin C. Cornwell, M. Dale Stokes, Michael D. Burkart, Thomas C. Hill, Paul J. DeMott, and Kimberly A. Prather
Atmos. Chem. Phys., 21, 9031–9045, https://doi.org/10.5194/acp-21-9031-2021, https://doi.org/10.5194/acp-21-9031-2021, 2021
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Ice-nucleating particles (INPs) can influence multiple climate-relevant cloud properties by triggering droplet freezing at relative humidities below or temperatures above the freezing point of water. The ocean is a significant INP source; however, the specific identities of marine INPs remain largely unknown. Here, we identify 14 ice-nucleating microbes from aerosol and precipitation samples collected at a coastal site in southern California, two or more of which are likely marine.
Matthieu Roy-Barman, Lorna Foliot, Eric Douville, Nathalie Leblond, Fréderic Gazeau, Matthieu Bressac, Thibaut Wagener, Céline Ridame, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 18, 2663–2678, https://doi.org/10.5194/bg-18-2663-2021, https://doi.org/10.5194/bg-18-2663-2021, 2021
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The release of insoluble elements such as aluminum (Al), iron (Fe), rare earth elements (REEs), thorium (Th) and protactinium (Pa) when Saharan dust falls over the Mediterranean Sea was studied during tank experiments under present and future climate conditions. Each element exhibited different dissolution kinetics and dissolution fractions (always lower than a few percent). Changes in temperature and/or pH under greenhouse conditions lead to a lower Th release and a higher light REE release.
France Van Wambeke, Elvira Pulido, Philippe Catala, Julie Dinasquet, Kahina Djaoudi, Anja Engel, Marc Garel, Sophie Guasco, Barbara Marie, Sandra Nunige, Vincent Taillandier, Birthe Zäncker, and Christian Tamburini
Biogeosciences, 18, 2301–2323, https://doi.org/10.5194/bg-18-2301-2021, https://doi.org/10.5194/bg-18-2301-2021, 2021
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Michaelis–Menten kinetics were determined for alkaline phosphatase, aminopeptidase and β-glucosidase in the Mediterranean Sea. Although the ectoenzymatic-hydrolysis contribution to heterotrophic prokaryotic needs was high in terms of N, it was low in terms of C. This study points out the biases in interpretation of the relative differences in activities among the three tested enzymes in regard to the choice of added concentrations of fluorogenic substrates.
Jonathan V. Trueblood, Alessia Nicosia, Anja Engel, Birthe Zäncker, Matteo Rinaldi, Evelyn Freney, Melilotus Thyssen, Ingrid Obernosterer, Julie Dinasquet, Franco Belosi, Antonio Tovar-Sánchez, Araceli Rodriguez-Romero, Gianni Santachiara, Cécile Guieu, and Karine Sellegri
Atmos. Chem. Phys., 21, 4659–4676, https://doi.org/10.5194/acp-21-4659-2021, https://doi.org/10.5194/acp-21-4659-2021, 2021
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Sea spray aerosols (SSAs) can be an important source of ice-nucleating particles (INPs) that impact cloud properties over the oceans. In the Mediterranean Sea, we found that the INPs in the seawater surface microlayer increased by an order of magnitude after a rain dust event that impacted iron and bacterial abundances. The INP properties of SSA (INPSSA) increased after a 3 d delay. Outside this event, INPSSA could be parameterized as a function of the seawater biogeochemistry.
Emilio Marañón, France Van Wambeke, Julia Uitz, Emmanuel S. Boss, Céline Dimier, Julie Dinasquet, Anja Engel, Nils Haëntjens, María Pérez-Lorenzo, Vincent Taillandier, and Birthe Zäncker
Biogeosciences, 18, 1749–1767, https://doi.org/10.5194/bg-18-1749-2021, https://doi.org/10.5194/bg-18-1749-2021, 2021
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The concentration of chlorophyll is commonly used as an indicator of the abundance of photosynthetic plankton (phytoplankton) in lakes and oceans. Our study investigates why a deep chlorophyll maximum, located near the bottom of the upper, illuminated layer develops in the Mediterranean Sea. We find that the acclimation of cells to low light is the main mechanism involved and that this deep maximum represents also a maximum in the biomass and carbon fixation activity of phytoplankton.
Kahina Djaoudi, France Van Wambeke, Aude Barani, Nagib Bhairy, Servanne Chevaillier, Karine Desboeufs, Sandra Nunige, Mohamed Labiadh, Thierry Henry des Tureaux, Dominique Lefèvre, Amel Nouara, Christos Panagiotopoulos, Marc Tedetti, and Elvira Pulido-Villena
Biogeosciences, 17, 6271–6285, https://doi.org/10.5194/bg-17-6271-2020, https://doi.org/10.5194/bg-17-6271-2020, 2020
Cécile Guieu, Fabrizio D'Ortenzio, François Dulac, Vincent Taillandier, Andrea Doglioli, Anne Petrenko, Stéphanie Barrillon, Marc Mallet, Pierre Nabat, and Karine Desboeufs
Biogeosciences, 17, 5563–5585, https://doi.org/10.5194/bg-17-5563-2020, https://doi.org/10.5194/bg-17-5563-2020, 2020
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We describe here the objectives and strategy of the PEACETIME project and cruise, dedicated to dust deposition and its impacts in the Mediterranean Sea. Our strategy to go a step further forward than in previous approaches in understanding these impacts by catching a real deposition event at sea is detailed. We summarize the work performed at sea, the type of data acquired and their valorization in the papers published in the special issue.
Yuri Galletti, Silvia Becagli, Alcide di Sarra, Margherita Gonnelli, Elvira Pulido-Villena, Damiano M. Sferlazzo, Rita Traversi, Stefano Vestri, and Chiara Santinelli
Biogeosciences, 17, 3669–3684, https://doi.org/10.5194/bg-17-3669-2020, https://doi.org/10.5194/bg-17-3669-2020, 2020
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This paper reports the first data about atmospheric deposition of dissolved organic matter (DOM) on the island of Lampedusa. It also shows the implications for the surface marine layer by studying the impact of atmospheric organic carbon deposition in the marine ecosystem. It is a preliminary study, but it is pioneering and important for having new data that can be crucial in order to understand the impact of atmospheric deposition on the marine carbon cycle in a global climate change scenario.
Vincent Taillandier, Louis Prieur, Fabrizio D'Ortenzio, Maurizio Ribera d'Alcalà, and Elvira Pulido-Villena
Biogeosciences, 17, 3343–3366, https://doi.org/10.5194/bg-17-3343-2020, https://doi.org/10.5194/bg-17-3343-2020, 2020
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This study addresses the role played by vertical diffusion in the nutrient enrichment of the Levantine intermediate waters, a process particularly relevant inside thermohaline staircases. Thanks to a high profiling frequency over a 4-year period, BGC-Argo float observations reveal the temporal continuity of the layering patterns encountered during the cruise PEACETIME and their impact on vertical and lateral transfers of nitrate between the deep reservoir and the surface productive zone.
Antonio Tovar-Sánchez, Araceli Rodríguez-Romero, Anja Engel, Birthe Zäncker, Franck Fu, Emilio Marañón, María Pérez-Lorenzo, Matthieu Bressac, Thibaut Wagener, Sylvain Triquet, Guillaume Siour, Karine Desboeufs, and Cécile Guieu
Biogeosciences, 17, 2349–2364, https://doi.org/10.5194/bg-17-2349-2020, https://doi.org/10.5194/bg-17-2349-2020, 2020
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Residence times of particulate metals derived from aerosol deposition in the Sea Surface Microlayer of the Mediterranean Sea ranged from a couple of minutes (e.g., for Fe) to a few hours (e.g., for Cu). Microbial activity seems to play an important role in in this process and in the concentration and distribution of metals between diferent water layers.
Miguel Gómez Batista, Marc Metian, François Oberhänsli, Simon Pouil, Peter W. Swarzenski, Eric Tambutté, Jean-Pierre Gattuso, Carlos M. Alonso Hernández, and Frédéric Gazeau
Biogeosciences, 17, 887–899, https://doi.org/10.5194/bg-17-887-2020, https://doi.org/10.5194/bg-17-887-2020, 2020
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In this paper, we assessed four methods (total alkalinity anomaly, calcium anomaly, 45Ca incorporation, and 13C incorporation) to determine coral calcification of a reef-building coral. Under all conditions (light vs. dark incubations and ambient vs. lowered pH levels), calcification rates estimated using the alkalinity and calcium anomaly techniques as well as 45Ca incorporation were highly correlated, while significantly different results were obtained with the 13C incorporation technique.
Marie Barbieux, Julia Uitz, Bernard Gentili, Orens Pasqueron de Fommervault, Alexandre Mignot, Antoine Poteau, Catherine Schmechtig, Vincent Taillandier, Edouard Leymarie, Christophe Penkerc'h, Fabrizio D'Ortenzio, Hervé Claustre, and Annick Bricaud
Biogeosciences, 16, 1321–1342, https://doi.org/10.5194/bg-16-1321-2019, https://doi.org/10.5194/bg-16-1321-2019, 2019
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As commonly observed in oligotrophic stratified waters, a subsurface (or deep) chlorophyll maximum (SCM) frequently characterizes the vertical distribution of phytoplankton chlorophyll in the Mediterranean Sea. SCMs often result from photoacclimation of the phytoplankton organisms. However they can also result from an actual increase in phytoplankton carbon biomass. Our results also suggest that a variety of intermediate types of SCMs are encountered between these two endmember situations.
Charles Troupin, Ananda Pascual, Simon Ruiz, Antonio Olita, Benjamin Casas, Félix Margirier, Pierre-Marie Poulain, Giulio Notarstefano, Marc Torner, Juan Gabriel Fernández, Miquel Àngel Rújula, Cristian Muñoz, Eva Alou, Inmaculada Ruiz, Antonio Tovar-Sánchez, John T. Allen, Amala Mahadevan, and Joaquín Tintoré
Earth Syst. Sci. Data, 11, 129–145, https://doi.org/10.5194/essd-11-129-2019, https://doi.org/10.5194/essd-11-129-2019, 2019
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The AlborEX (the Alboran Sea Experiment) consisted of an experiment in the Alboran Sea (western Mediterranean Sea) that took place between 25 and 31 May 2014, and use a wide range of oceanographic sensors. The dataset provides information on mesoscale and sub-mesoscale processes taking place in a frontal area. This paper presents the measurements obtained from these sensors and describes their particularities: scale, spatial and temporal resolutions, measured variables, etc.
Christos Panagiotopoulos, Mireille Pujo-Pay, Mar Benavides, France Van Wambeke, and Richard Sempéré
Biogeosciences, 16, 105–116, https://doi.org/10.5194/bg-16-105-2019, https://doi.org/10.5194/bg-16-105-2019, 2019
Stelios Myriokefalitakis, Akinori Ito, Maria Kanakidou, Athanasios Nenes, Maarten C. Krol, Natalie M. Mahowald, Rachel A. Scanza, Douglas S. Hamilton, Matthew S. Johnson, Nicholas Meskhidze, Jasper F. Kok, Cecile Guieu, Alex R. Baker, Timothy D. Jickells, Manmohan M. Sarin, Srinivas Bikkina, Rachel Shelley, Andrew Bowie, Morgane M. G. Perron, and Robert A. Duce
Biogeosciences, 15, 6659–6684, https://doi.org/10.5194/bg-15-6659-2018, https://doi.org/10.5194/bg-15-6659-2018, 2018
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The first atmospheric iron (Fe) deposition model intercomparison is presented in this study, as a result of the deliberations of the United Nations Joint Group of Experts on the Scientific Aspects of Marine Environmental Protection (GESAMP; http://www.gesamp.org/) Working Group 38. We conclude that model diversity over remote oceans reflects uncertainty in the Fe content parameterizations of dust aerosols, combustion aerosol emissions and the size distribution of transported aerosol Fe.
Kyle R. Frischkorn, Andreas Krupke, Cécile Guieu, Justine Louis, Mónica Rouco, Andrés E. Salazar Estrada, Benjamin A. S. Van Mooy, and Sonya T. Dyhrman
Biogeosciences, 15, 5761–5778, https://doi.org/10.5194/bg-15-5761-2018, https://doi.org/10.5194/bg-15-5761-2018, 2018
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Trichodesmium is a keystone genus of marine cyanobacteria that is estimated to supply nearly half of the ocean’s fixed nitrogen, fuelling primary productivity and the cycling of carbon and nitrogen in the ocean. In our study we characterize Trichodesmium ecology across the western tropical South Pacific using gene and genome sequencing and geochemistry. We detected genes for phosphorus reduction, providing a mechanism for the noted importance of this organism in the ocean's phosphorus cycle.
Sophie Bonnet, Mathieu Caffin, Hugo Berthelot, Olivier Grosso, Mar Benavides, Sandra Helias-Nunige, Cécile Guieu, Marcus Stenegren, and Rachel Ann Foster
Biogeosciences, 15, 4215–4232, https://doi.org/10.5194/bg-15-4215-2018, https://doi.org/10.5194/bg-15-4215-2018, 2018
Nicholas Bock, France Van Wambeke, Moïra Dion, and Solange Duhamel
Biogeosciences, 15, 3909–3925, https://doi.org/10.5194/bg-15-3909-2018, https://doi.org/10.5194/bg-15-3909-2018, 2018
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We report the distribution of major nano- and pico-plankton groups in the western tropical South Pacific. We found microbial community structure to be typical of highly stratified regions of the open ocean, with significant contributions to total biomass by picophytoeukaryotes, and N2 fixation playing a central role in regulating ecosystem processes. Our results also suggest a reduction in the importance of predation in regulating bacteria populations under nutrient-limited conditions.
France Van Wambeke, Audrey Gimenez, Solange Duhamel, Cécile Dupouy, Dominique Lefevre, Mireille Pujo-Pay, and Thierry Moutin
Biogeosciences, 15, 2669–2689, https://doi.org/10.5194/bg-15-2669-2018, https://doi.org/10.5194/bg-15-2669-2018, 2018
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The western tropical South Pacific Ocean has recently been shown to be a hotspot for biological nitrogen fixation. In this study, we examined the horizontal and vertical distribution of heterotrophic prokaryotic production alongside photosynthetic rates, nitrogen fixation rates and phosphate turnover times across the western tropical South Pacific Ocean, in order to relate these fluxes to bottom–up controls (related to nitrogen, phosphate and labile C availability).
Mathieu Caffin, Thierry Moutin, Rachel Ann Foster, Pascale Bouruet-Aubertot, Andrea Michelangelo Doglioli, Hugo Berthelot, Cécile Guieu, Olivier Grosso, Sandra Helias-Nunige, Nathalie Leblond, Audrey Gimenez, Anne Alexandra Petrenko, Alain de Verneil, and Sophie Bonnet
Biogeosciences, 15, 2565–2585, https://doi.org/10.5194/bg-15-2565-2018, https://doi.org/10.5194/bg-15-2565-2018, 2018
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We performed N budgets to assess the role of N2 fixation on production and export in the western tropical South Pacific Ocean. We deployed a combination of techniques including high-sensitivity measurements of N input and sediment traps deployment. We demonstrated that N2 fixation was the major source of new N before atmospheric deposition and upward nitrate fluxes. It contributed significantly to organic matter export, indicating a high efficiency of this region to export carbon.
Vincent Taillandier, Thibaut Wagener, Fabrizio D'Ortenzio, Nicolas Mayot, Hervé Legoff, Joséphine Ras, Laurent Coppola, Orens Pasqueron de Fommervault, Catherine Schmechtig, Emilie Diamond, Henry Bittig, Dominique Lefevre, Edouard Leymarie, Antoine Poteau, and Louis Prieur
Earth Syst. Sci. Data, 10, 627–641, https://doi.org/10.5194/essd-10-627-2018, https://doi.org/10.5194/essd-10-627-2018, 2018
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We report on data from an oceanographic cruise, covering western, central and eastern parts of the Mediterranean Sea. This cruise was fully dedicated to the maintenance and the metrological verification of a biogeochemical observing system based on a fleet of BGC-Argo floats.
Lydia Kapsenberg, Samir Alliouane, Frédéric Gazeau, Laure Mousseau, and Jean-Pierre Gattuso
Ocean Sci., 13, 411–426, https://doi.org/10.5194/os-13-411-2017, https://doi.org/10.5194/os-13-411-2017, 2017
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In the interest of global ocean change, weekly water samples were collected at a coastal site in the northwestern Mediterranean Sea (2007–2015). Seawater pH declined faster than expected from anthropogenic carbon dioxide increase. Total alkalinity increased, but the driver could not be identified, and it may be linked to changes in freshwater chemistry of watersheds. This is the first coastal acidification time-series providing multiyear data at high temporal resolution.
Angela Wulff, Maria Karlberg, Malin Olofsson, Anders Torstensson, Lasse Riemann, Franciska Steinhoff, Malin Mohlin, Nina Ekstrand, and Melissa Chierici
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-383, https://doi.org/10.5194/bg-2016-383, 2016
Manuscript not accepted for further review
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The Baltic Sea could expect increased precipitation (lower salinity) and increased concentration of atmospheric CO2 over the next 100 years. In a 12-day outdoor experiment, we tested the combined effects of lower salinity and increased CO2 concentrations on a natural summer microplanktonic community. Lower salinity seemed more important than increased pCO2. Thus, we do not expect any dramatic effects of increased pCO2 in combination with decreased salinity on the Baltic microplanktonic food web.
Julie Vincent, Benoit Laurent, Rémi Losno, Elisabeth Bon Nguyen, Pierre Roullet, Stéphane Sauvage, Servanne Chevaillier, Patrice Coddeville, Noura Ouboulmane, Alcide Giorgio di Sarra, Antonio Tovar-Sánchez, Damiano Sferlazzo, Ana Massanet, Sylvain Triquet, Rafael Morales Baquero, Michel Fornier, Cyril Coursier, Karine Desboeufs, François Dulac, and Gilles Bergametti
Atmos. Chem. Phys., 16, 8749–8766, https://doi.org/10.5194/acp-16-8749-2016, https://doi.org/10.5194/acp-16-8749-2016, 2016
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To investigate dust deposition dynamics at the regional scale, five automatic deposition collectors named CARAGA have been deployed in the western Mediterranean basin (Lampedusa, Majorca, Corsica, Frioul and Le Casset) during 1 to 3 years depending on the station. Complementary observations provided by both satellite and air mass trajectories are used to identify the dust provenance areas and the transport pathways from the Sahara to the stations for the studied period.
Ilana Berman-Frank, Dina Spungin, Eyal Rahav, France Van Wambeke, Kendra Turk-Kubo, and Thierry Moutin
Biogeosciences, 13, 3793–3805, https://doi.org/10.5194/bg-13-3793-2016, https://doi.org/10.5194/bg-13-3793-2016, 2016
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In the marine environment, sticky sugar-containing gels, termed transparent exopolymeric particles (TEP), are produced from biological sources and physical and chemical processes. These compounds are essential vectors enhancing downward flow of organic matter and its storage at depth. Spatial and temporal dynamics of TEPs were followed for 23 days during the VAHINE mesocosm experiment that investigated the fate of nitrogen and carbon derived from organisms fixing atmospheric N2 (diazotrophs).
Marc Tedetti, Lauriane Marie, Rüdiger Röttgers, Martine Rodier, France Van Wambeke, Sandra Helias, Mathieu Caffin, Véronique Cornet-Barthaux, and Cécile Dupouy
Biogeosciences, 13, 3283–3303, https://doi.org/10.5194/bg-13-3283-2016, https://doi.org/10.5194/bg-13-3283-2016, 2016
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In the framework of the VAHINE project, we investigated the spectral characteristics and the variability of dissolved and particulate chromophoric materials throughout a 23-day mesocosm experiment conducted in the south-west Pacific at the mouth of the New Caledonian coral lagoon. We found that the dynamics of CDOM and particulate matter absorption were strongly coupled with those of cyanobacteria Synechococcus spp. and bacterial production.
France Van Wambeke, Ulrike Pfreundt, Aude Barani, Hugo Berthelot, Thierry Moutin, Martine Rodier, Wolfgang R. Hess, and Sophie Bonnet
Biogeosciences, 13, 3187–3202, https://doi.org/10.5194/bg-13-3187-2016, https://doi.org/10.5194/bg-13-3187-2016, 2016
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The phytoplankton is at the base of the plankton food web in large parts of oceanic "deserts" such as the South Pacific Ocean, where nitrogen sources limit activity. Mesocosms were fertilized with phosphorus to stimulate diazotrophy (atmospheric N2 fixation). Mostly diazotroph-derived nitrogen fuelled the heterotrophic bacterial community through indirect processes generating dissolved organic matter and detritus, such as mortality, lysis and grazing of both diazotrophs and non-diazotrophs.
Ulrike Pfreundt, France Van Wambeke, Mathieu Caffin, Sophie Bonnet, and Wolfgang R. Hess
Biogeosciences, 13, 2319–2337, https://doi.org/10.5194/bg-13-2319-2016, https://doi.org/10.5194/bg-13-2319-2016, 2016
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The Southwest Pacific has one of the highest N2 fixation rates in the global ocean, yet information is scarce on the bacterioplankton interrelationships. We detected high microbial diversity in the New Caledonia lagoon and inside a 50 000 L experimental enclosure of the same water mass over 3 weeks and give evidence for previously unknown niche partitioning. Phosphate fertilization promoted the growth of efficient N2 fixing cyanobacteria triggering the growth of most heterotrophic bacteria.
T. Erin Cox, Frédéric Gazeau, Samir Alliouane, Iris E. Hendriks, Paul Mahacek, Arnaud Le Fur, and Jean-Pierre Gattuso
Biogeosciences, 13, 2179–2194, https://doi.org/10.5194/bg-13-2179-2016, https://doi.org/10.5194/bg-13-2179-2016, 2016
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The ocean absorbs atmospheric carbon dioxide (CO2) which increases the concentrations of CO2 and decreases pH in a process called ocean acidification. Because seagrass rely on carbon for photosynthesis they are expected to benefit under future ocean acidification. We manipulated pH in a Posidonia oceanica seagrass meadow. Seagrass traits, photosynthesis, and growth were not affected. Any benefit from ocean acidification over the next century on Posidonia physiology and growth may be minimal.
A. N. Schwier, C. Rose, E. Asmi, A. M. Ebling, W. M. Landing, S. Marro, M.-L. Pedrotti, A. Sallon, F. Iuculano, S. Agusti, A. Tsiola, P. Pitta, J. Louis, C. Guieu, F. Gazeau, and K. Sellegri
Atmos. Chem. Phys., 15, 7961–7976, https://doi.org/10.5194/acp-15-7961-2015, https://doi.org/10.5194/acp-15-7961-2015, 2015
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The effect of ocean acidification and changing water conditions on primary (and secondary) marine aerosol emissions is not well understood on a regional or a global scale. To investigate this effect, we deployed mesocosms in the Mediterranean Sea for several weeks during both winter pre-bloom and summer oligotrophic conditions and subjected them to various levels of CO2. We observed larger effects due to the differences between a pre-bloom and oligotrophic environment than due to CO2 levels.
C. Lo Monaco, N. Metzl, F. D'Ovidio, J. Llort, and C. Ridame
Biogeosciences Discuss., https://doi.org/10.5194/bgd-11-17543-2014, https://doi.org/10.5194/bgd-11-17543-2014, 2014
Revised manuscript has not been submitted
E. Pulido-Villena, A.-C. Baudoux, I. Obernosterer, M. Landa, J. Caparros, P. Catala, C. Georges, J. Harmand, and C. Guieu
Biogeosciences, 11, 5607–5619, https://doi.org/10.5194/bg-11-5607-2014, https://doi.org/10.5194/bg-11-5607-2014, 2014
C. Guieu, C. Ridame, E. Pulido-Villena, M. Bressac, K. Desboeufs, and F. Dulac
Biogeosciences, 11, 5621–5635, https://doi.org/10.5194/bg-11-5621-2014, https://doi.org/10.5194/bg-11-5621-2014, 2014
K. Desboeufs, N. Leblond, T. Wagener, E. Bon Nguyen, and C. Guieu
Biogeosciences, 11, 5581–5594, https://doi.org/10.5194/bg-11-5581-2014, https://doi.org/10.5194/bg-11-5581-2014, 2014
C. Ridame, J. Dekaezemacker, C. Guieu, S. Bonnet, S. L'Helguen, and F. Malien
Biogeosciences, 11, 4783–4800, https://doi.org/10.5194/bg-11-4783-2014, https://doi.org/10.5194/bg-11-4783-2014, 2014
M. Bressac, C. Guieu, D. Doxaran, F. Bourrin, K. Desboeufs, N. Leblond, and C. Ridame
Biogeosciences, 11, 1007–1020, https://doi.org/10.5194/bg-11-1007-2014, https://doi.org/10.5194/bg-11-1007-2014, 2014
P. Pondaven, P. Pivière, C. Ridame, and C. Guien
Biogeosciences Discuss., https://doi.org/10.5194/bgd-11-2933-2014, https://doi.org/10.5194/bgd-11-2933-2014, 2014
Revised manuscript has not been submitted
C. Guieu, F. Dulac, C. Ridame, and P. Pondaven
Biogeosciences, 11, 425–442, https://doi.org/10.5194/bg-11-425-2014, https://doi.org/10.5194/bg-11-425-2014, 2014
D. S. Maat, N. J. Bale, E. C. Hopmans, A.-C. Baudoux, J. S. Sinninghe Damsté, S. Schouten, and C. P. D. Brussaard
Biogeosciences, 11, 185–194, https://doi.org/10.5194/bg-11-185-2014, https://doi.org/10.5194/bg-11-185-2014, 2014
C. Ridame, C. Guieu, and S. L'Helguen
Biogeosciences, 10, 7333–7346, https://doi.org/10.5194/bg-10-7333-2013, https://doi.org/10.5194/bg-10-7333-2013, 2013
V. Giovagnetti, C. Brunet, F. Conversano, F. Tramontano, I. Obernosterer, C. Ridame, and C. Guieu
Biogeosciences, 10, 2973–2991, https://doi.org/10.5194/bg-10-2973-2013, https://doi.org/10.5194/bg-10-2973-2013, 2013
K. Wuttig, T. Wagener, M. Bressac, A. Dammshäuser, P. Streu, C. Guieu, and P. L. Croot
Biogeosciences, 10, 2583–2600, https://doi.org/10.5194/bg-10-2583-2013, https://doi.org/10.5194/bg-10-2583-2013, 2013
Related subject area
Biogeochemistry: Open Ocean
Sedimentary organic matter signature hints at the phytoplankton-driven biological carbon pump in the central Arabian Sea
Hydrological cycle amplification imposes spatial patterns on the climate change response of ocean pH and carbonate chemistry
Assessing the tropical Atlantic biogeochemical processes in the Norwegian Earth System Model
Evolution of oxygen and stratification and their relationship in the North Pacific Ocean in CMIP6 Earth system models
Evaluation of CMIP6 model performance in simulating historical biogeochemistry across the southern South China Sea
Drivers of decadal trends in the ocean carbon sink in the past, present, and future in Earth system models
Anthropogenic carbon storage and its decadal changes in the Atlantic between 1990–2020
Ocean alkalinity enhancement impacts: regrowth of marine microalgae in alkaline mineral concentrations simulating the initial concentrations after ship-based dispersions
Climatic controls on metabolic constraints in the ocean
Effects of grain size and seawater salinity on magnesium hydroxide dissolution and secondary calcium carbonate precipitation kinetics: implications for ocean alkalinity enhancement
Short-term response of Emiliania huxleyi growth and morphology to abrupt salinity stress
Assessing the impact of CO2-equilibrated ocean alkalinity enhancement on microbial metabolic rates in an oligotrophic system
Ocean Acidification trends and Carbonate System dynamics in the North Atlantic Subpolar Gyre during 2009–2019
Phosphomonoesterase and phosphodiesterase activities in the eastern Mediterranean in two contrasting seasonal situations
Net primary production annual maxima in the North Atlantic projected to shift in the 21st century
Testing the influence of light on nitrite cycling in the eastern tropical North Pacific
Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary
Technical note: Assessment of float pH data quality control methods – a case study in the subpolar northwest Atlantic Ocean
Linking northeastern North Pacific oxygen changes to upstream surface outcrop variations
Underestimation of multi-decadal global O2 loss due to an optimal interpolation method
Reviews and syntheses: expanding the global coverage of gross primary production and net community production measurements using Biogeochemical-Argo floats
Characteristics of surface physical and biogeochemical parameters within mesoscale eddies in the Southern Ocean
Seasonal dynamics and annual budget of dissolved inorganic carbon in the northwestern Mediterranean deep-convection region
The fingerprint of climate variability on the surface ocean cycling of iron and its isotopes
Reconstructing the ocean's mesopelagic zone carbon budget: sensitivity and estimation of parameters associated with prokaryotic remineralization
Seasonal cycles of biogeochemical fluxes in the Scotia Sea, Southern Ocean: a stable isotope approach
Absence of photophysiological response to iron addition in autumn phytoplankton in the Antarctic sea-ice zone
Optimal parameters for the ocean's nutrient, carbon, and oxygen cycles compensate for circulation biases but replumb the biological pump
Importance of multiple sources of iron for the upper-ocean biogeochemistry over the northern Indian Ocean
Exploring the role of different data types and timescales in the quality of marine biogeochemical model calibration
All about nitrite: exploring nitrite sources and sinks in the eastern tropical North Pacific oxygen minimum zone
Fossil coccolith morphological attributes as a new proxy for deep ocean carbonate chemistry
Reconstructing ocean carbon storage with CMIP6 Earth system models and synthetic Argo observations
Using machine learning and Biogeochemical-Argo (BGC-Argo) floats to assess biogeochemical models and optimize observing system design
The representation of alkalinity and the carbonate pump from CMIP5 to CMIP6 Earth system models and implications for the carbon cycle
Model estimates of metazoans' contributions to the biological carbon pump
Tracing differences in iron supply to the Mid-Atlantic Ridge valley between hydrothermal vent sites: implications for the addition of iron to the deep ocean
Nitrite cycling in the primary nitrite maxima of the eastern tropical North Pacific
Hotspots and drivers of compound marine heatwaves and low net primary production extremes
Ecosystem impacts of marine heat waves in the northeast Pacific
Tracing the role of Arctic shelf processes in Si and N cycling and export through the Fram Strait: insights from combined silicon and nitrate isotopes
Controls on the relative abundances and rates of nitrifying microorganisms in the ocean
The response of diazotrophs to nutrient amendment in the South China Sea and western North Pacific
Influence of GEOTRACES data distribution and misfit function choice on objective parameter retrieval in a marine zinc cycle model
Physiological flexibility of phytoplankton impacts modelled chlorophyll and primary production across the North Pacific Ocean
Observation-constrained estimates of the global ocean carbon sink from Earth system models
Early winter barium excess in the southern Indian Ocean as an annual remineralisation proxy (GEOTRACES GIPr07 cruise)
Controlling factors on the global distribution of a representative marine non-cyanobacterial diazotroph phylotype (Gamma A)
Summer trends and drivers of sea surface fCO2 and pH changes observed in the southern Indian Ocean over the last two decades (1998–2019)
Global nutrient cycling by commercially targeted marine fish
Medhavi Pandey, Haimanti Biswas, Daniel Birgel, Nicole Burdanowitz, and Birgit Gaye
Biogeosciences, 21, 4681–4698, https://doi.org/10.5194/bg-21-4681-2024, https://doi.org/10.5194/bg-21-4681-2024, 2024
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We analysed sea surface temperature (SST) proxy and plankton biomarkers in sediments that accumulate sinking material signatures from surface waters in the central Arabian Sea (21°–11° N, 64° E), a tropical basin impacted by monsoons. We saw a north–south SST gradient, and the biological proxies showed more organic matter from larger algae in the north. Smaller algae and zooplankton were more numerous in the south. These trends were related to ocean–atmospheric processes and oxygen availability.
Allison Hogikyan and Laure Resplandy
Biogeosciences, 21, 4621–4636, https://doi.org/10.5194/bg-21-4621-2024, https://doi.org/10.5194/bg-21-4621-2024, 2024
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Rising atmospheric CO2 influences ocean carbon chemistry, leading to ocean acidification. Global warming introduces spatial patterns in the intensity of ocean acidification. We show that the most prominent spatial patterns are controlled by warming-driven changes in rainfall and evaporation, not by the direct effect of warming on carbon chemistry and pH. These evaporation and rainfall patterns oppose acidification in saltier parts of the ocean and enhance acidification in fresher regions.
Shunya Koseki, Lander R. Crespo, Jerry Tjiputra, Filippa Fransner, Noel S. Keenlyside, and David Rivas
Biogeosciences, 21, 4149–4168, https://doi.org/10.5194/bg-21-4149-2024, https://doi.org/10.5194/bg-21-4149-2024, 2024
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We investigated how the physical biases of an Earth system model influence the marine biogeochemical processes in the tropical Atlantic. With four different configurations of the model, we have shown that the versions with better SST reproduction tend to better represent the primary production and air–sea CO2 flux in terms of climatology, seasonal cycle, and response to climate variability.
Lyuba Novi, Annalisa Bracco, Takamitsu Ito, and Yohei Takano
Biogeosciences, 21, 3985–4005, https://doi.org/10.5194/bg-21-3985-2024, https://doi.org/10.5194/bg-21-3985-2024, 2024
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We explored the relationship between oxygen and stratification in the North Pacific Ocean using a combination of data mining and machine learning. We used isopycnic potential vorticity (IPV) as an indicator to quantify ocean ventilation and analyzed its predictability, a strong O2–IPV connection, and predictability for IPV in the tropical Pacific. This opens new routes for monitoring ocean O2 through few observational sites co-located with more abundant IPV measurements in the tropical Pacific.
Winfred Marshal, Jing Xiang Chung, Nur Hidayah Roseli, Roswati Md Amin, and Mohd Fadzil Bin Mohd Akhir
Biogeosciences, 21, 4007–4035, https://doi.org/10.5194/bg-21-4007-2024, https://doi.org/10.5194/bg-21-4007-2024, 2024
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This study stands out for thoroughly examining CMIP6 ESMs' ability to simulate biogeochemical variables in the southern South China Sea, an economically important region. It assesses variables like chlorophyll, phytoplankton, nitrate, and oxygen on annual and seasonal scales. While global assessments exist, this study addresses a gap by objectively ranking 13 CMIP6 ocean biogeochemistry models' performance at a regional level, focusing on replicating specific observed biogeochemical variables.
Jens Terhaar
Biogeosciences, 21, 3903–3926, https://doi.org/10.5194/bg-21-3903-2024, https://doi.org/10.5194/bg-21-3903-2024, 2024
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Despite the ocean’s importance in the carbon cycle and hence the climate, observing the ocean carbon sink remains challenging. Here, I use an ensemble of 12 models to understand drivers of decadal trends of the past, present, and future ocean carbon sink. I show that 80 % of the decadal trends in the multi-model mean ocean carbon sink can be explained by changes in decadal trends in atmospheric CO2. The remaining 20 % are due to internal climate variability and ocean heat uptake.
Reiner Steinfeldt, Monika Rhein, and Dagmar Kieke
Biogeosciences, 21, 3839–3867, https://doi.org/10.5194/bg-21-3839-2024, https://doi.org/10.5194/bg-21-3839-2024, 2024
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We calculate the amount of anthropogenic carbon (Cant) in the Atlantic for the years 1990, 2000, 2010 and 2020. Cant is the carbon that is taken up by the ocean as a result of humanmade CO2 emissions. To determine the amount of Cant, we apply a technique that is based on the observations of other humanmade gases (e.g., chlorofluorocarbons). Regionally, changes in ocean ventilation have an impact on the storage of Cant. Overall, the increase in Cant is driven by the rising CO2 in the atmosphere.
Stephanie Delacroix, Tor Jensen Nystuen, August E. Dessen Tobiesen, Andrew L. King, and Erik Höglund
Biogeosciences, 21, 3677–3690, https://doi.org/10.5194/bg-21-3677-2024, https://doi.org/10.5194/bg-21-3677-2024, 2024
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The addition of alkaline minerals into the ocean might reduce excessive anthropogenic CO2 emissions. Magnesium hydroxide can be added in large amounts because of its low seawater solubility without reaching harmful pH levels. The toxicity effect results of magnesium hydroxide, by simulating the expected concentrations from a ship's dispersion scenario, demonstrated low impacts on both sensitive and local assemblages of marine microalgae when compared to calcium hydroxide.
Precious Mongwe, Matthew Long, Takamitsu Ito, Curtis Deutsch, and Yeray Santana-Falcón
Biogeosciences, 21, 3477–3490, https://doi.org/10.5194/bg-21-3477-2024, https://doi.org/10.5194/bg-21-3477-2024, 2024
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We use a collection of measurements that capture the physiological sensitivity of organisms to temperature and oxygen and a CESM1 large ensemble to investigate how natural climate variations and climate warming will impact the ability of marine heterotrophic marine organisms to support habitats in the future. We find that warming and dissolved oxygen loss over the next several decades will reduce the volume of ocean habitats and will increase organisms' vulnerability to extremes.
Charly A. Moras, Tyler Cyronak, Lennart T. Bach, Renaud Joannes-Boyau, and Kai G. Schulz
Biogeosciences, 21, 3463–3475, https://doi.org/10.5194/bg-21-3463-2024, https://doi.org/10.5194/bg-21-3463-2024, 2024
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We investigate the effects of mineral grain size and seawater salinity on magnesium hydroxide dissolution and calcium carbonate precipitation kinetics for ocean alkalinity enhancement. Salinity did not affect the dissolution, but calcium carbonate formed earlier at lower salinities due to the lower magnesium and dissolved organic carbon concentrations. Smaller grain sizes dissolved faster but calcium carbonate precipitated earlier, suggesting that medium grain sizes are optimal for kinetics.
Rosie M. Sheward, Christina Gebühr, Jörg Bollmann, and Jens O. Herrle
Biogeosciences, 21, 3121–3141, https://doi.org/10.5194/bg-21-3121-2024, https://doi.org/10.5194/bg-21-3121-2024, 2024
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How quickly do marine microorganisms respond to salinity stress? Our experiments with the calcifying marine plankton Emiliania huxleyi show that growth and cell morphology responded to salinity stress within as little as 24–48 hours, demonstrating that morphology and calcification are sensitive to salinity over a range of timescales. Our results have implications for understanding the short-term role of E. huxleyi in biogeochemical cycles and in size-based paleoproxies for salinity.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, Joaquín Ortiz, Stephen D. Archer, Andrea Ludwig, and Ulf Riebesell
Biogeosciences, 21, 2859–2876, https://doi.org/10.5194/bg-21-2859-2024, https://doi.org/10.5194/bg-21-2859-2024, 2024
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Our planet is facing a climate crisis. Scientists are working on innovative solutions that will aid in capturing the hard to abate emissions before it is too late. Exciting research reveals that ocean alkalinity enhancement, a key climate change mitigation strategy, does not harm phytoplankton, the cornerstone of marine ecosystems. Through meticulous study, we may have uncovered a positive relationship: up to a specific limit, enhancing ocean alkalinity boosts photosynthesis by certain species.
David Curbelo-Hernández, Fiz F. Pérez, Melchor González-Dávila, Sergey V. Gladyshev, Aridane G. González, David González-Santana, Antón Velo, Alexey Sokov, and J. Magdalena Santana-Casiano
EGUsphere, https://doi.org/10.5194/egusphere-2024-1388, https://doi.org/10.5194/egusphere-2024-1388, 2024
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The study evaluated CO2-carbonate system dynamics in the North Atlantic Subpolar Gyre from 2009 to 2019. Significant ocean acidification, largely due to rising anthropogenic CO2 levels, was found. Cooling, freshening, and enhanced convective processes intensified this trend, affecting calcite and aragonite saturation. The findings contribute to a deeper understanding of Ocean Acidification and improve our knowledge about its impact on marine ecosystems.
France Van Wambeke, Pascal Conan, Mireille Pujo-Pay, Vincent Taillandier, Olivier Crispi, Alexandra Pavlidou, Sandra Nunige, Morgane Didry, Christophe Salmeron, and Elvira Pulido-Villena
Biogeosciences, 21, 2621–2640, https://doi.org/10.5194/bg-21-2621-2024, https://doi.org/10.5194/bg-21-2621-2024, 2024
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Phosphomonoesterase (PME) and phosphodiesterase (PDE) activities over the epipelagic zone are described in the eastern Mediterranean Sea in winter and autumn. The types of concentration kinetics obtained for PDE (saturation at 50 µM, high Km, high turnover times) compared to those of PME (saturation at 1 µM, low Km, low turnover times) are discussed in regard to the possible inequal distribution of PDE and PME in the size continuum of organic material and accessibility to phosphodiesters.
Jenny Hieronymus, Magnus Hieronymus, Matthias Gröger, Jörg Schwinger, Raffaele Bernadello, Etienne Tourigny, Valentina Sicardi, Itzel Ruvalcaba Baroni, and Klaus Wyser
Biogeosciences, 21, 2189–2206, https://doi.org/10.5194/bg-21-2189-2024, https://doi.org/10.5194/bg-21-2189-2024, 2024
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The timing of the net primary production annual maxima in the North Atlantic in the period 1750–2100 is investigated using two Earth system models and the high-emissions scenario SSP5-8.5. It is found that, for most of the region, the annual maxima occur progressively earlier, with the most change occurring after the year 2000. Shifts in the seasonality of the primary production may impact the entire ecosystem, which highlights the need for long-term monitoring campaigns in this area.
Nicole M. Travis, Colette L. Kelly, and Karen L. Casciotti
Biogeosciences, 21, 1985–2004, https://doi.org/10.5194/bg-21-1985-2024, https://doi.org/10.5194/bg-21-1985-2024, 2024
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We conducted experimental manipulations of light level on microbial communities from the primary nitrite maximum. Overall, while individual microbial processes have different directions and magnitudes in their response to increasing light, the net community response is a decline in nitrite production with increasing light. We conclude that while increased light may decrease net nitrite production, high-light conditions alone do not exclude nitrification from occurring in the surface ocean.
Zoë Rebecca van Kemenade, Zeynep Erdem, Ellen Christine Hopmans, Jaap Smede Sinninghe Damsté, and Darci Rush
Biogeosciences, 21, 1517–1532, https://doi.org/10.5194/bg-21-1517-2024, https://doi.org/10.5194/bg-21-1517-2024, 2024
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The California Current system (CCS) hosts the eastern subtropical North Pacific oxygen minimum zone (ESTNP OMZ). This study shows anaerobic ammonium oxidizing (anammox) bacteria cause a loss of bioavailable nitrogen (N) in the ESTNP OMZ throughout the late Quaternary. Anammox occurred during both glacial and interglacial periods and was driven by the supply of organic matter and changes in ocean currents. These findings may have important consequences for biogeochemical models of the CCS.
Cathy Wimart-Rousseau, Tobias Steinhoff, Birgit Klein, Henry Bittig, and Arne Körtzinger
Biogeosciences, 21, 1191–1211, https://doi.org/10.5194/bg-21-1191-2024, https://doi.org/10.5194/bg-21-1191-2024, 2024
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The marine CO2 system can be measured independently and continuously by BGC-Argo floats since numerous pH sensors have been developed to suit these autonomous measurements platforms. By applying the Argo correction routines to float pH data acquired in the subpolar North Atlantic Ocean, we report the uncertainty and lack of objective criteria associated with the choice of the reference method as well the reference depth for the pH correction.
Sabine Mecking and Kyla Drushka
Biogeosciences, 21, 1117–1133, https://doi.org/10.5194/bg-21-1117-2024, https://doi.org/10.5194/bg-21-1117-2024, 2024
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This study investigates whether northeastern North Pacific oxygen changes may be caused by surface density changes in the northwest as water moves along density horizons from the surface into the subsurface ocean. A correlation is found with a lag that about matches the travel time of water from the northwest to the northeast. Salinity is the main driver causing decadal changes in surface density, whereas salinity and temperature contribute about equally to long-term declining density trends.
Takamitsu Ito, Hernan E. Garcia, Zhankun Wang, Shoshiro Minobe, Matthew C. Long, Just Cebrian, James Reagan, Tim Boyer, Christopher Paver, Courtney Bouchard, Yohei Takano, Seth Bushinsky, Ahron Cervania, and Curtis A. Deutsch
Biogeosciences, 21, 747–759, https://doi.org/10.5194/bg-21-747-2024, https://doi.org/10.5194/bg-21-747-2024, 2024
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This study aims to estimate how much oceanic oxygen has been lost and its uncertainties. One major source of uncertainty comes from the statistical gap-filling methods. Outputs from Earth system models are used to generate synthetic observations where oxygen data are extracted from the model output at the location and time of historical oceanographic cruises. Reconstructed oxygen trend is approximately two-thirds of the true trend.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
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This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Qian Liu, Yingjie Liu, and Xiaofeng Li
Biogeosciences, 20, 4857–4874, https://doi.org/10.5194/bg-20-4857-2023, https://doi.org/10.5194/bg-20-4857-2023, 2023
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In the Southern Ocean, abundant eddies behave opposite to our expectations. That is, anticyclonic (cyclonic) eddies are cold (warm). By investigating the variations of physical and biochemical parameters in eddies, we find that abnormal eddies have unique and significant effects on modulating the parameters. This study fills a gap in understanding the effects of abnormal eddies on physical and biochemical parameters in the Southern Ocean.
Caroline Ulses, Claude Estournel, Patrick Marsaleix, Karline Soetaert, Marine Fourrier, Laurent Coppola, Dominique Lefèvre, Franck Touratier, Catherine Goyet, Véronique Guglielmi, Fayçal Kessouri, Pierre Testor, and Xavier Durrieu de Madron
Biogeosciences, 20, 4683–4710, https://doi.org/10.5194/bg-20-4683-2023, https://doi.org/10.5194/bg-20-4683-2023, 2023
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Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, considered to be a hotspot of biodiversity and climate change. In this study, we investigate the seasonal and annual budget of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea.
Daniela König and Alessandro Tagliabue
Biogeosciences, 20, 4197–4212, https://doi.org/10.5194/bg-20-4197-2023, https://doi.org/10.5194/bg-20-4197-2023, 2023
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Using model simulations, we show that natural and anthropogenic changes in the global climate leave a distinct fingerprint in the isotopic signatures of iron in the surface ocean. We find that these climate effects on iron isotopes are often caused by the redistribution of iron from different external sources to the ocean, due to changes in ocean currents, and by changes in algal growth, which take up iron. Thus, isotopes may help detect climate-induced changes in iron supply and algal uptake.
Chloé Baumas, Robin Fuchs, Marc Garel, Jean-Christophe Poggiale, Laurent Memery, Frédéric A. C. Le Moigne, and Christian Tamburini
Biogeosciences, 20, 4165–4182, https://doi.org/10.5194/bg-20-4165-2023, https://doi.org/10.5194/bg-20-4165-2023, 2023
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Through the sink of particles in the ocean, carbon (C) is exported and sequestered when reaching 1000 m. Attempts to quantify C exported vs. C consumed by heterotrophs have increased. Yet most of the conducted estimations have led to C demands several times higher than C export. The choice of parameters greatly impacts the results. As theses parameters are overlooked, non-accurate values are often used. In this study we show that C budgets can be well balanced when using appropriate values.
Anna Belcher, Sian F. Henley, Katharine Hendry, Marianne Wootton, Lisa Friberg, Ursula Dallman, Tong Wang, Christopher Coath, and Clara Manno
Biogeosciences, 20, 3573–3591, https://doi.org/10.5194/bg-20-3573-2023, https://doi.org/10.5194/bg-20-3573-2023, 2023
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The oceans play a crucial role in the uptake of atmospheric carbon dioxide, particularly the Southern Ocean. The biological pumping of carbon from the surface to the deep ocean is key to this. Using sediment trap samples from the Scotia Sea, we examine biogeochemical fluxes of carbon, nitrogen, and biogenic silica and their stable isotope compositions. We find phytoplankton community structure and physically mediated processes are important controls on particulate fluxes to the deep ocean.
Asmita Singh, Susanne Fietz, Sandy J. Thomalla, Nicolas Sanchez, Murat V. Ardelan, Sébastien Moreau, Hanna M. Kauko, Agneta Fransson, Melissa Chierici, Saumik Samanta, Thato N. Mtshali, Alakendra N. Roychoudhury, and Thomas J. Ryan-Keogh
Biogeosciences, 20, 3073–3091, https://doi.org/10.5194/bg-20-3073-2023, https://doi.org/10.5194/bg-20-3073-2023, 2023
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Despite the scarcity of iron in the Southern Ocean, seasonal blooms occur due to changes in nutrient and light availability. Surprisingly, during an autumn bloom in the Antarctic sea-ice zone, the results from incubation experiments showed no significant photophysiological response of phytoplankton to iron addition. This suggests that ambient iron concentrations were sufficient, challenging the notion of iron deficiency in the Southern Ocean through extended iron-replete post-bloom conditions.
Benoît Pasquier, Mark Holzer, Matthew A. Chamberlain, Richard J. Matear, Nathaniel L. Bindoff, and François W. Primeau
Biogeosciences, 20, 2985–3009, https://doi.org/10.5194/bg-20-2985-2023, https://doi.org/10.5194/bg-20-2985-2023, 2023
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Modeling the ocean's carbon and oxygen cycles accurately is challenging. Parameter optimization improves the fit to observed tracers but can introduce artifacts in the biological pump. Organic-matter production and subsurface remineralization rates adjust to compensate for circulation biases, changing the pathways and timescales with which nutrients return to the surface. Circulation biases can thus strongly alter the system’s response to ecological change, even when parameters are optimized.
Priyanka Banerjee
Biogeosciences, 20, 2613–2643, https://doi.org/10.5194/bg-20-2613-2023, https://doi.org/10.5194/bg-20-2613-2023, 2023
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This study shows that atmospheric deposition is the most important source of iron to the upper northern Indian Ocean for phytoplankton growth. This is followed by iron from continental-shelf sediment. Phytoplankton increase following iron addition is possible only with high background levels of nitrate. Vertical mixing is the most important physical process supplying iron to the upper ocean in this region throughout the year. The importance of ocean currents in supplying iron varies seasonally.
Iris Kriest, Julia Getzlaff, Angela Landolfi, Volkmar Sauerland, Markus Schartau, and Andreas Oschlies
Biogeosciences, 20, 2645–2669, https://doi.org/10.5194/bg-20-2645-2023, https://doi.org/10.5194/bg-20-2645-2023, 2023
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Global biogeochemical ocean models are often subjectively assessed and tuned against observations. We applied different strategies to calibrate a global model against observations. Although the calibrated models show similar tracer distributions at the surface, they differ in global biogeochemical fluxes, especially in global particle flux. Simulated global volume of oxygen minimum zones varies strongly with calibration strategy and over time, rendering its temporal extrapolation difficult.
John C. Tracey, Andrew R. Babbin, Elizabeth Wallace, Xin Sun, Katherine L. DuRussel, Claudia Frey, Donald E. Martocello III, Tyler Tamasi, Sergey Oleynik, and Bess B. Ward
Biogeosciences, 20, 2499–2523, https://doi.org/10.5194/bg-20-2499-2023, https://doi.org/10.5194/bg-20-2499-2023, 2023
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Nitrogen (N) is essential for life; thus, its availability plays a key role in determining marine productivity. Using incubations of seawater spiked with a rare form of N measurable on a mass spectrometer, we quantified microbial pathways that determine marine N availability. The results show that pathways that recycle N have higher rates than those that result in its loss from biomass and present new evidence for anaerobic nitrite oxidation, a process long thought to be strictly aerobic.
Amanda Gerotto, Hongrui Zhang, Renata Hanae Nagai, Heather M. Stoll, Rubens César Lopes Figueira, Chuanlian Liu, and Iván Hernández-Almeida
Biogeosciences, 20, 1725–1739, https://doi.org/10.5194/bg-20-1725-2023, https://doi.org/10.5194/bg-20-1725-2023, 2023
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Based on the analysis of the response of coccolithophores’ morphological attributes in a laboratory dissolution experiment and surface sediment samples from the South China Sea, we proposed that the thickness shape (ks) factor of fossil coccoliths together with the normalized ks variation, which is the ratio of the standard deviation of ks (σ) over the mean ks (σ/ks), is a robust and novel proxy to reconstruct past changes in deep ocean carbon chemistry.
Katherine E. Turner, Doug M. Smith, Anna Katavouta, and Richard G. Williams
Biogeosciences, 20, 1671–1690, https://doi.org/10.5194/bg-20-1671-2023, https://doi.org/10.5194/bg-20-1671-2023, 2023
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We present a new method for reconstructing ocean carbon using climate models and temperature and salinity observations. To test this method, we reconstruct modelled carbon using synthetic observations consistent with current sampling programmes. Sensitivity tests show skill in reconstructing carbon trends and variability within the upper 2000 m. Our results indicate that this method can be used for a new global estimate for ocean carbon content.
Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
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Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
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Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Jérôme Pinti, Tim DeVries, Tommy Norin, Camila Serra-Pompei, Roland Proud, David A. Siegel, Thomas Kiørboe, Colleen M. Petrik, Ken H. Andersen, Andrew S. Brierley, and André W. Visser
Biogeosciences, 20, 997–1009, https://doi.org/10.5194/bg-20-997-2023, https://doi.org/10.5194/bg-20-997-2023, 2023
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Large numbers of marine organisms such as zooplankton and fish perform daily vertical migration between the surface (at night) and the depths (in the daytime). This fascinating migration is important for the carbon cycle, as these organisms actively bring carbon to depths where it is stored away from the atmosphere for a long time. Here, we quantify the contributions of different animals to this carbon drawdown and storage and show that fish are important to the biological carbon pump.
Alastair J. M. Lough, Alessandro Tagliabue, Clément Demasy, Joseph A. Resing, Travis Mellett, Neil J. Wyatt, and Maeve C. Lohan
Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, https://doi.org/10.5194/bg-20-405-2023, 2023
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Iron is a key nutrient for ocean primary productivity. Hydrothermal vents are a source of iron to the oceans, but the size of this source is poorly understood. This study examines the variability in iron inputs between hydrothermal vents in different geological settings. The vents studied release different amounts of Fe, resulting in plumes with similar dissolved iron concentrations but different particulate concentrations. This will help to refine modelling of iron-limited ocean productivity.
Nicole M. Travis, Colette L. Kelly, Margaret R. Mulholland, and Karen L. Casciotti
Biogeosciences, 20, 325–347, https://doi.org/10.5194/bg-20-325-2023, https://doi.org/10.5194/bg-20-325-2023, 2023
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The primary nitrite maximum is a ubiquitous upper ocean feature where nitrite accumulates, but we still do not understand its formation and the co-occurring microbial processes involved. Using correlative methods and rates measurements, we found strong spatial patterns between environmental conditions and depths of the nitrite maxima, but not the maximum concentrations. Nitrification was the dominant source of nitrite, with occasional high nitrite production from phytoplankton near the coast.
Natacha Le Grix, Jakob Zscheischler, Keith B. Rodgers, Ryohei Yamaguchi, and Thomas L. Frölicher
Biogeosciences, 19, 5807–5835, https://doi.org/10.5194/bg-19-5807-2022, https://doi.org/10.5194/bg-19-5807-2022, 2022
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Compound events threaten marine ecosystems. Here, we investigate the potentially harmful combination of marine heatwaves with low phytoplankton productivity. Using satellite-based observations, we show that these compound events are frequent in the low latitudes. We then investigate the drivers of these compound events using Earth system models. The models share similar drivers in the low latitudes but disagree in the high latitudes due to divergent factors limiting phytoplankton production.
Abigale M. Wyatt, Laure Resplandy, and Adrian Marchetti
Biogeosciences, 19, 5689–5705, https://doi.org/10.5194/bg-19-5689-2022, https://doi.org/10.5194/bg-19-5689-2022, 2022
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Marine heat waves (MHWs) are a frequent event in the northeast Pacific, with a large impact on the region's ecosystems. Large phytoplankton in the North Pacific Transition Zone are greatly affected by decreased nutrients, with less of an impact in the Alaskan Gyre. For small phytoplankton, MHWs increase the spring small phytoplankton population in both regions thanks to reduced light limitation. In both zones, this results in a significant decrease in the ratio of large to small phytoplankton.
Margot C. F. Debyser, Laetitia Pichevin, Robyn E. Tuerena, Paul A. Dodd, Antonia Doncila, and Raja S. Ganeshram
Biogeosciences, 19, 5499–5520, https://doi.org/10.5194/bg-19-5499-2022, https://doi.org/10.5194/bg-19-5499-2022, 2022
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We focus on the exchange of key nutrients for algae production between the Arctic and Atlantic oceans through the Fram Strait. We show that the export of dissolved silicon here is controlled by the availability of nitrate which is influenced by denitrification on Arctic shelves. We suggest that any future changes in the river inputs of silica and changes in denitrification due to climate change will impact the amount of silicon exported, with impacts on Atlantic algal productivity and ecology.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Zuozhu Wen, Thomas J. Browning, Rongbo Dai, Wenwei Wu, Weiying Li, Xiaohua Hu, Wenfang Lin, Lifang Wang, Xin Liu, Zhimian Cao, Haizheng Hong, and Dalin Shi
Biogeosciences, 19, 5237–5250, https://doi.org/10.5194/bg-19-5237-2022, https://doi.org/10.5194/bg-19-5237-2022, 2022
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Fe and P are key factors controlling the biogeography and activity of marine N2-fixing microorganisms. We found lower abundance and activity of N2 fixers in the northern South China Sea than around the western boundary of the North Pacific, and N2 fixation rates switched from Fe–P co-limitation to P limitation. We hypothesize the Fe supply rates and Fe utilization strategies of each N2 fixer are important in regulating spatial variability in community structure across the study area.
Claudia Eisenring, Sophy E. Oliver, Samar Khatiwala, and Gregory F. de Souza
Biogeosciences, 19, 5079–5106, https://doi.org/10.5194/bg-19-5079-2022, https://doi.org/10.5194/bg-19-5079-2022, 2022
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Given the sparsity of observational constraints on micronutrients such as zinc (Zn), we assess the sensitivities of a framework for objective parameter optimisation in an oceanic Zn cycling model. Our ensemble of optimisations towards synthetic data with varying kinds of uncertainty shows that deficiencies related to model complexity and the choice of the misfit function generally have a greater impact on the retrieval of model Zn uptake behaviour than does the limitation of data coverage.
Yoshikazu Sasai, Sherwood Lan Smith, Eko Siswanto, Hideharu Sasaki, and Masami Nonaka
Biogeosciences, 19, 4865–4882, https://doi.org/10.5194/bg-19-4865-2022, https://doi.org/10.5194/bg-19-4865-2022, 2022
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We have investigated the adaptive response of phytoplankton growth to changing light, nutrients, and temperature over the North Pacific using two physical-biological models. We compare modeled chlorophyll and primary production from an inflexible control model (InFlexPFT), which assumes fixed carbon (C):nitrogen (N):chlorophyll (Chl) ratios, to a recently developed flexible phytoplankton functional type model (FlexPFT), which incorporates photoacclimation and variable C:N:Chl ratios.
Jens Terhaar, Thomas L. Frölicher, and Fortunat Joos
Biogeosciences, 19, 4431–4457, https://doi.org/10.5194/bg-19-4431-2022, https://doi.org/10.5194/bg-19-4431-2022, 2022
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Estimates of the ocean sink of anthropogenic carbon vary across various approaches. We show that the global ocean carbon sink can be estimated by three parameters, two of which approximate the ocean ventilation in the Southern Ocean and the North Atlantic, and one of which approximates the chemical capacity of the ocean to take up carbon. With observations of these parameters, we estimate that the global ocean carbon sink is 10 % larger than previously assumed, and we cut uncertainties in half.
Natasha René van Horsten, Hélène Planquette, Géraldine Sarthou, Thomas James Ryan-Keogh, Nolwenn Lemaitre, Thato Nicholas Mtshali, Alakendra Roychoudhury, and Eva Bucciarelli
Biogeosciences, 19, 3209–3224, https://doi.org/10.5194/bg-19-3209-2022, https://doi.org/10.5194/bg-19-3209-2022, 2022
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The remineralisation proxy, barite, was measured along 30°E in the southern Indian Ocean during early austral winter. To our knowledge this is the first reported Southern Ocean winter study. Concentrations throughout the water column were comparable to observations during spring to autumn. By linking satellite primary production to this proxy a possible annual timescale is proposed. These findings also suggest possible carbon remineralisation from satellite data on a basin scale.
Zhibo Shao and Ya-Wei Luo
Biogeosciences, 19, 2939–2952, https://doi.org/10.5194/bg-19-2939-2022, https://doi.org/10.5194/bg-19-2939-2022, 2022
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Non-cyanobacterial diazotrophs (NCDs) may be an important player in fixing N2 in the ocean. By conducting meta-analyses, we found that a representative marine NCD phylotype, Gamma A, tends to inhabit ocean environments with high productivity, low iron concentration and high light intensity. It also appears to be more abundant inside cyclonic eddies. Our study suggests a niche differentiation of NCDs from cyanobacterial diazotrophs as the latter prefers low-productivity and high-iron oceans.
Coraline Leseurre, Claire Lo Monaco, Gilles Reverdin, Nicolas Metzl, Jonathan Fin, Claude Mignon, and Léa Benito
Biogeosciences, 19, 2599–2625, https://doi.org/10.5194/bg-19-2599-2022, https://doi.org/10.5194/bg-19-2599-2022, 2022
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Decadal trends of fugacity of CO2 (fCO2), total alkalinity (AT), total carbon (CT) and pH in surface waters are investigated in different domains of the southern Indian Ocean (45°S–57°S) from ongoing and station observations regularly conducted in summer over the period 1998–2019. The fCO2 increase and pH decrease are mainly driven by anthropogenic CO2 estimated just below the summer mixed layer, as well as by a warming south of the polar front or in the fertilized waters near Kerguelen Island.
Priscilla Le Mézo, Jérôme Guiet, Kim Scherrer, Daniele Bianchi, and Eric Galbraith
Biogeosciences, 19, 2537–2555, https://doi.org/10.5194/bg-19-2537-2022, https://doi.org/10.5194/bg-19-2537-2022, 2022
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This study quantifies the role of commercially targeted fish biomass in the cycling of three important nutrients (N, P, and Fe), relative to nutrients otherwise available in water and to nutrients required by primary producers, and the impact of fishing. We use a model of commercially targeted fish biomass constrained by fish catch and stock assessment data to assess the contributions of fish at the global scale, at the time of the global peak catch and prior to industrial fishing.
Cited articles
Aminot, A. and Kérouel, R.:
Dosage automatique des nutriments dans les eaux marines,
in: Méthodes d'analyses en milieu marin,
edited by: edited by: IFREMER, Editions Quae, Versailles, 188 pp., 2007.
Angel, R., Nepel, M., Panhölzl, C., Schmidt, H., Herbold, C. W., Eichorst, S. A., and Woebken, D.:
Evaluation of primers targeting the diazotroph functional gene and development of NifMAP–A bioinformatics pipeline for analyzing nifH amplicon data,
Front. Microbiol.,
9, 703, https://doi.org/10.3389/fmicb.2018.00703, 2018.
Bar Zeev, E., Yogev, T., Man-Aharonovich, D., Kress, N., Herut, B., Beja, O., and Berman-Frank, I.:
Seasonal dynamics of the endosymbiotic, nitrogen-fixing cyanobacterium Richelia intracellularis in the Eastern Mediterranean Sea,
ISME J.,
2, 911–923, https://doi.org/10.1038/ismej.2008.56, 2008.
Benavides, M., Bonnet, S., Hernández, N., Martínez-Pérez, A. M., Nieto-Cid, M., and Álvarez-Salgado, X. A.:
Basin-wide N2 fixation in the deep waters of the Mediterranean Sea,
Global Biogeochem. Cy.,
30, 952–961, https://doi.org/10.1002/2015GB005326, 2016.
Bentzon-Tilia, M., Traving, S. J., Mantikci, M., Knudsen-Leerbeck, H., Hansen, J. L. S., Markager, S., and Riemann, L.:
Significant N2 fixation by heterotrophs, photoheterotrophs and heterocystous cyanobacteria in two temperate estuaries,
ISME J.,
9, 273–285, https://doi.org/10.1038/ismej.2014.119, 2015.
Berman-Frank, I. A., Quigg, A., Finkel, Z. V, Irwin, A. J., and Haramaty, L.:
Nitrogen-fixation strategies and Fe requirements in cyanobacteria,
Limnol. Oceanogr.,
52, 2260–2269, 2007.
Bigeard, E., Lopes Dos Santos, A., and Ribeiro, C.:
nifH amplification for Illumina sequencing,
protocols.io,
https://doi.org/10.17504/protocols.io.bkipkudn, 2021.
Bonnet, S. and Guieu, C.:
Atmospheric forcing on the annual in the Mediterranean Sea. A one year survey,
J. Geophys. Res.,
111, C09010, https://doi.org/10.1029/2005JC003213, 2006.
Bonnet, S., Grosso, O., and Moutin, T.: Planktonic dinitrogen fixation along a longitudinal gradient across the Mediterranean Sea during the stratified period (BOUM cruise), Biogeosciences, 8, 2257–2267, https://doi.org/10.5194/bg-8-2257-2011, 2011.
Bosc, E., Bricaud, A., and Antoine, D.:
Seasonal and interannual variability in algal biomass and primary production in the Mediterranean Sea, as derived from 4 years of SeaWiFS observations,
Global Biogeochem. Cy.,
18, GB1005, https://doi.org/10.1029/2003GB002034, 2004.
Bombar, D., Heller, P., Sanchez-Baracaldo, P., Carter, B. J., and Zehr, J. P.:
Comparative genomics reveals surprising divergence of two closely related strains of uncultivated UCYN-A cyanobacteria,
ISME J.,
8, 2530–2542, https://doi.org/10.1038/ismej.2014.167, 2014.
Böttjer, D., Karl, D. M., Letelier, R. M., Viviani, D. A., and Church, M. J.:
Experimental assessment of diazotroph responses to elevated seawater pCO2 in the North Pacific Subtropical Gyre,
Global Biogeochem. Cy.,
28, 601–616, https://doi.org/10.1002/2013GB004690, 2014.
Bressac, M., Wagener, T., Leblond, N., Tovar-Sánchez, A., Ridame, C., Taillandier, V., Albani, S., Guasco, S., Dufour, A., Jacquet, S. H. M., Dulac, F., Desboeufs, K., and Guieu, C.: Subsurface iron accumulation and rapid aluminum removal in the Mediterranean following African dust deposition, Biogeosciences, 18, 6435–6453, https://doi.org/10.5194/bg-18-6435-2021, 2021.
Buchfink, B., Xie, C., and Huson, D. H.:
Fast and sensitive protein alignment using DIAMOND,
Nat. Methods,
12, 1, 59–60, https://doi.org/10.1038/nmeth.3176, 2015.
Callahan, B. J., Mc Murdie, P. J., Rosen, M. J., Han, A. W., Johnson, A. J. A., and Holmes, S.:
DADA2: High-resolution sample inference from Illumina amplicon data,
Nat. Methods,
13, 581, https://doi.org/10.1038/nmeth.3869, 2016.
Calvo-Díaz, A., Díaz-Pérez, L., Suárez, L. Á., Morán, X. A. G., Teira, E., and Marañón, E.:
Decrease in the autotrophic-to-heterotrophic biomass ratio of picoplankton in oligotrophic marine waters due to bottle enclosure,
Appl. Environ. Microbiol.,
77, 5739–5746, https://doi.org/10.1128/AEM.00066-11, 2011.
Clarke, K. R. and Warwick, P. E.:
Change in Marine Communities: An Approach to Statistical Analysis and Interpretation,
Primer-E Ltd, Plymouth, UK, 2001.
Cornejo-Castillo, F. M., Munoz-Marin, M. D. C., Turk-Kubo, K. A., Royo-Llonch, M., Farnelid, H., Acinas, S. G., and Zehr, J. P.:
UCYN-A3, a newly characterized open ocean sublineage of the symbiotic N2-fixing cyanobacterium Candidatus Atelocyanobacterium Thalassa,
Environ. Microbiol.,
21, 111–124, https://doi.org/10.1111/1462-2920.14429, 2019.
Desboeufs, K. V., Losno, R., and Colin, J.-L.:
Factors influencing aerosol solubility during cloud processes,
Atmos. Environ.,
35, 3529–3537, https://doi.org/10.1016/S1352-2310(00)00472-6, 2001.
Desboeufs, K., Leblond, N., Wagener, T., Bon Nguyen, E., and Guieu, C.: Chemical fate and settling of mineral dust in surface seawater after atmospheric deposition observed from dust seeding experiments in large mesocosms, Biogeosciences, 11, 5581–5594, https://doi.org/10.5194/bg-11-5581-2014, 2014.
Dinasquet, J., Bigeard, E., Gazeau, F., Azam, F., Guieu, C., Marañón, E., Ridame, C., Van Wambeke, F., Obernosterer, I., and Baudoux, A.-C.: Impact of dust addition on the microbial food web under present and future conditions of pH and temperature, Biogeosciences Discuss. [preprint], https://doi.org/10.5194/bg-2021-143, in review, 2021.
D'Ortenzio, F. and Ribera d'Alcalà, M.: On the trophic regimes of the Mediterranean Sea: a satellite analysis, Biogeosciences, 6, 139–148, https://doi.org/10.5194/bg-6-139-2009, 2009.
D'Ortenzio, F., Iudicone, D., de Boyer Montegut, C., Testor, P., Antoine, D., Marullo, S., Santoleri, R., and Madec, G.:
Seasonal variability of the mixed layer depth in the Mediterranean Sea as derived from in situ profiles,
Geophys. Res. Lett., 32, L12605, https://doi.org/10.1029/2005GL022463, 2005.
Eichner, M., Rost, B., and Kranz, S.:
Diversity of ocean acidification effects on marine N2 fixers,
J. Exp. Mar. Biol. Ecol.,
457, 199–207, https://doi.org/10.1016/j.jembe.2014.04.015, 2014.
El Hourany, R., Abboud-Abi Saab, M., Faour, G., Mejia, C., Crépon, M., and Thiria, S.:
Phytoplankton diversity in the Mediterranean Sea from satellite data using self-organizing maps,
J. Geophys. Res.-Oceans,
124, 5827–5843, https://doi.org/10.1029/2019JC015131, 2019.
Farnelid, H., Turk-Kubo, K. A., del Carmen Muñoz-Marín, M., and Zehr, J. P.:
New insights into the ecology of the globally significant uncultured nitrogen-fixing symbiont UCYN-A,
Aquat. Microb. Ecol.,
77, 125–138, https://doi.org/10.3354/ame01794, 2016.
Fonseca-Batista, D., Li, X., Riou, V., Michotey, V., Deman, F., Fripiat, F., Guasco, S., Brion, N., Lemaitre, N., Tonnard, M., Gallinari, M., Planquette, H., Planchon, F., Sarthou, G., Elskens, M., LaRoche, J., Chou, L., and Dehairs, F.: Evidence of high N2 fixation rates in the temperate northeast Atlantic, Biogeosciences, 16, 999–1017, https://doi.org/10.5194/bg-16-999-2019, 2019.
Frank, I. E., Turk-Kubo, K. A., and Zehr, J. P.:
Rapid annotation of nif H gene sequences using classification and regression trees facilitates environmental functional gene analysis,
Env. Microbiol. Rep.,
8, 905–916. https://doi.org/10.1111/1758-2229.12455, 2016.
Fu, F.-X., Mulholland, M. R., Garcia, N. S., Beck, A., Bernhardt, P. W., Warner, M. E., Sanudo-Wilhelmy, S. A., and Hutchins, D. A.:
Interactions between changing pCO2, N2 fixation, and Fe limitation in the marine unicellular cyanobacterium Crocosphaera,
Limnol. Oceanogr.,
53, 2472–2484, https://doi.org/10.4319/lo.2008.53.6.2472, 2008.
Fu, F.-X., Yu, E., Garcia, N. S., Gale, Y., Luo, Y., Webb, E. A., and Hutchins, D. A.:
Differing responses of marine N2 fixers to warming and consequences for future diazotroph community structure,
Aquat. Microb. Ecol.,
72, 33–46, https://doi.org/10.3354/ame01683, 2014.
Fukuda, R., Ogawa, H., Nagata, T., and Koike, I.:
Direct determination of carbon and nitrogen contents of natural bacterial assemblages in marine environments,
Appl. Environ. Microb.,
64, 3352–3358, https://doi.org/10.1128/aem.64.9.3352-3358.1998, 1998.
Garcia, N., Raimbault, P., Gouze, E., and Sandroni, V.:
Nitrogen fixation and primary production in Western Mediterranean,
C. R. Biol.,
329, 742–750, https://doi.org/10.1016/j.crvi.2006.06.006, 2006.
Gazeau, F., Ridame, C., Van Wambeke, F., Alliouane, S., Stolpe, C., Irisson, J.-O., Marro, S., Grisoni, J.-M., De Liège, G., Nunige, S., Djaoudi, K., Pulido-Villena, E., Dinasquet, J., Obernosterer, I., Catala, P., and Guieu, C.: Impact of dust addition on Mediterranean plankton communities under present and future conditions of pH and temperature: an experimental overview, Biogeosciences, 18, 5011–5034, https://doi.org/10.5194/bg-18-5011-2021, 2021a.
Gazeau, F., Van Wambeke, F., Marañón, E., Pérez-Lorenzo, M., Alliouane, S., Stolpe, C., Blasco, T., Leblond, N., Zäncker, B., Engel, A., Marie, B., Dinasquet, J., and Guieu, C.: Impact of dust addition on the metabolism of Mediterranean plankton communities and carbon export under present and future conditions of pH and temperature, Biogeosciences, 18, 5423–5446, https://doi.org/10.5194/bg-18-5423-2021, 2021b.
Giorgi, F.:
Climate change Hot-spots,
Geophys. Res. Lett.,
33, L08707, https://doi.org/10.1029/2006GL025734, 2006.
Guieu, C. and Ridame, C.:
Impact of atmospheric deposition on marine chemistry and biogeochemistry,
in: Atmospheric Chemistry in the Mediterranean Region: Comprehensive Diagnosis and Impacts,
edited by: Dulac, F., Sauvage, S., and Hamonou, E.,
Springer, Cham, Switzerland, 2020.
Guieu, C., Dulac, F., Desboeufs, K., Wagener, T., Pulido-Villena, E., Grisoni, J.-M., Louis, F., Ridame, C., Blain, S., Brunet, C., Bon Nguyen, E., Tran, S., Labiadh, M., and Dominici, J.-M.: Large clean mesocosms and simulated dust deposition: a new methodology to investigate responses of marine oligotrophic ecosystems to atmospheric inputs, Biogeosciences, 7, 2765–2784, https://doi.org/10.5194/bg-7-2765-2010, 2010.
Guieu, C., D'Ortenzio, F., Dulac, F., Taillandier, V., Doglioli, A., Petrenko, A., Barrillon, S., Mallet, M., Nabat, P., and Desboeufs, K.: Introduction: Process studies at the air–sea interface after atmospheric deposition in the Mediterranean Sea – objectives and strategy of the PEACETIME oceanographic campaign (May–June 2017), Biogeosciences, 17, 5563–5585, https://doi.org/10.5194/bg-17-5563-2020, 2020a.
Guieu, C., Desboeufs, K., Albani, S., Alliouane, S., Aumont, O., Barbieux, M., Barrillon, S., Baudoux, A.-C., Berline, L., Bhairy, N., Bigeard, E., Bloss, M., Bressac, M., Brito, J., Carlotti, F., de Liege, G., Dinasquet, J., Djaoudi, K., Doglioli, A., D’Ortenzio, F., Doussin, J.-F., Duforet, L., Dulac, F., Dutay, J.-C., Engel, A., Feliu-Brito, G., Ferre, H., Formenti, P., Fu, F., Garcia, D., Garel, M., Gazeau, F., Giorio, C., Gregori, G., Grisoni, J.-M., Guasco, S., Guittonneau, J., Haëntjens, N., Heimburger, L.-E., Helias, S., Jacquet, S., Laurent, B., Leblond, N., Lefevre, D., Mallet, M., Marañón, E., Nabat, P., Nicosia, A., Obernosterer, I., Perez, L. M., Petrenko, A., Pulido-Villena, E., Raimbault, P., Ridame, C., Riffault, V., Rougier, G., Rousselet, L., Roy-Barman, M., Saiz-Lopez, A., Schmechtig, C., Sellegri, K., Siour, G., Taillandier, V., Tamburini, C., Thyssen, M., Tovar-Sanchez, A., Triquet, S., Uitz, J., Van Wambeke, F., Wagener, T., and Zaencker, B.: BIOGEOCHEMICAL dataset collected during the PEACETIME cruis, SEANOE [data set], https://doi.org/10.17882/75747, 2020b.
Hama, T., Miyazaki, T., Ogawa, Y., Iwakuma, T., Takahashi, M., Otsuki, A., and Ichimura, S.:
Measurement of photosynthetic production of a marine phytopklankton population using a stable 13C isotope,
Mar. Biol.,
73, 31–36, https://doi.org/10.1007/BF00396282, 1983.
Henke, B. A., Turk-Kubo, K. A., Bonnet, S., and Zehr, J. P.:
Distributions and Abundances of Sublineages of the N2-Fixing Cyanobacterium Candidatus Atelocyanobacterium thalassa (UCYN-A) in the New Caledonian Coral Lagoon,
Front. Microbiol.,
9, 554, https://doi.org/10.3389/fmicb.2018.00554, 2018.
Herut, B., Zohary, T., Krom, M. D., Mantoura, R. F., Pitta, P., Psarra, S., Rassoulzadegan, F., Tanaka, T., and Thingstad, T. F.:
Response of East Mediterranean surface water to Saharan dust: On-board microcosm experiment and field observations,
Deep-Sea Res. Pt. II,
52, 3024–3040, https://doi.org/10.1016/j.dsr2.2005.09.003, 2005.
Herut, B., Rahav, E., Tsagaraki, T. M., Giannakourou, A., Tsiola, A., Psarra, S., Lagaria, A., Papageorgiou, N., Mihalopoulos, N., Theodosi, C. N., Violaki, K., Stathopoulou, E., Scoullos, M., Krom, M. D., Stockdale, A., Shi, Z., Berman-Frank, I., Meador, T. B., Tanaka, T., and Paraskevi, P.:
The potential impact of Saharan dust and polluted aerosols on microbial populations in the East Mediterranean Sea, an overview of a mesocosm experimental approach,
Front. Mar. Sci.,
3, 226, https://doi.org/10.3389/fmars.2016.00226, 2016.
Hutchins, D., Fu, F.-X., Webb, E., Walworth, N., and Tagliabue, A.:
Taxon-specific response of marine nitrogen fixers to elevated carbon dioxide concentrations,
Nat. Geosci.,
6, 790–795, https://doi.org/10.1038/ngeo1858, 2013.
Ibello, V., Cantoni, C., Cozzi, S., and Civitarese, G.:
First basin-wide experimental results on N2 fixation in the open Mediterranean Sea,
Geophys. Res. Lett.,
37, L03608, https://doi.org/10.1029/2009GL041635, 2010.
Ignatiades, L., Gotsis-Skretas, O., Pagou, K., and Krasakopoulou, E.:
Diversification of phytoplankton community structure and related parameters along a large-scale longitudinal east-west transect of the Mediterranean Sea,
J. Plankton. Res.,
31, 411–428, https://doi.org/10.1093/plankt/fbn124, 2009.
IPCC: IPCC Special Report on the Ocean and Cryosphere in a Changing Climate, edited by: Pörtner, H.-O., Roberts, D. C., Masson-Delmotte, V., Zhai, P., Tignor, M., Poloczanska, E., Mintenbeck, K., Alegría, A., Nicolai, M., Okem, A., Petzold, J., Rama, B., and Weyer, N. M., in press, 2019.
Jiang, H. B., Fu, F.-X., Rivero-Calle, S., Levine. N. M., Sañudo-Wilhelmy, S. A., Qu, P. P., Wang, X. W., Pinedo-Gonzalez, P., Zhu, Z., and Hutchins, D. A.:
Ocean warming alleviates iron limitation of marine nitrogen fixation,
Nat, Clim. Change,
8, 709–712, https://doi.org/10.1038/s41558-018-0216-8, 2018.
Klingmüller, K., Pozzer, A., Metzger, S., Stenchikov, G. L., and Lelieveld, J.: Aerosol optical depth trend over the Middle East, Atmos. Chem. Phys., 16, 5063–5073, https://doi.org/10.5194/acp-16-5063-2016, 2016.
Krom, M. D., Herut, B., and Mantoura, R. F. C.:
Nutrient budget for the Eastern Mediterranean: Implications for phosphorus limitation,
Limnol. Oceanogr.,
49, 1582–1592, https://doi.org/10.4319/lo.2004.49.5.1582, 2004.
Krom, M. D., Emeis, K. C., and Van Cappellen, P.:
Why is the Eastern Mediterranean phosphorus limited?,
Prog. Oceanogr.,
85, 236–244, https://doi.org/10.1016/j.pocean.2010.03.003, 2010.
Langlois, R. J., Hümmer, D., and LaRoche, J.:
Abundances and Distributions of the Dominant nifH Phylotypes in the Northern Atlantic Ocean,
Appl. Environ. Microb.,
74, 1922–1931, https://doi.org/10.1128/AEM.01720-07, 2008.
Langlois, R. J., Mills, M. M., Ridame, C., Croot, P., and LaRoche, J.:
Diazotrophic bacteria respond to Saharan dust additions,
Mar. Ecol. Prog. Ser.,
470, 1–14, https://doi.org/10.3354/meps10109, 2012.
Law, C. S., Breitbarth, E., Hoffmann, L. J., McGraw, C. M. Langlois, R. J., LaRoche, J., Marriner, A., and Safi, K. A.:
No stimulation of nitrogen fixation by non-filamentous diazotrophs under elevated CO2 in the South Pacific,
Glob. Change Biol.,
18, 3004–3014, https://doi.org/10.1111/j.1365-2486.2012.02777.x, 2012.
Lazzari, P., Solidoro, C., Ibello, V., Salon, S., Teruzzi, A., Béranger, K., Colella, S., and Crise, A.: Seasonal and inter-annual variability of plankton chlorophyll and primary production in the Mediterranean Sea: a modelling approach, Biogeosciences, 9, 217–233, https://doi.org/10.5194/bg-9-217-2012, 2012.
Le Moal, M., Collin, H., and Biegala, I. C.: Intriguing diversity among diazotrophic picoplankton along a Mediterranean transect: a dominance of rhizobia, Biogeosciences, 8, 827–840, https://doi.org/10.5194/bg-8-827-2011, 2011.
Lekunberri, I., Lefort, T., Romero, E., Vázquez-Domínguez, E., Romera-Castillo, C., Marrasé, C., Peters, F., Weinbauer, M., and Gasol, J. M.:
Effects of a dust deposition event on coastal marine microbial abundance and activity, bacterial community structure and ecosystem function,
J. Plankton Res.,
32, 381–396, https://doi.org/10.1093/plankt/fbp137, 2010.
Louis, J., Bressac, M., Pedrotti, M. L., and Guieu, C.:
Dissolved inorganic nitrogen and phosphorus dynamics in abiotic seawater following an artificial Saharan dust deposition,
Front. Mar. Sci., 2, 27, https://doi.org/10.3389/fmars.2015.00027, 2015.
Manca, B., Burca, M., Giorgetti, A., Coatanoan, C., Garcia, M.-J., and Iona, A.:
Physical and biochemical averaged vertical profiles in the Mediterranean regions: An important tool to trace the climatology of water masses and to validate incoming data from operational oceanography,
J. Marine Syst.,
48, 83–116, https://doi.org/10.1016/j.jmarsys.2003.11.025, 2004.
Man-Aharonovich, D., Kress, N., Bar Zeev, E., Berman-Frank, I., and Beja, O.:
Molecular ecology of nifH genes and transcripts in the Eastern Mediterranean Sea,
Environ. Microbiol.,
9, 2354–2363, https://doi.org/10.1111/j.1462-2920.2007.01353.x, 2007.
Marañón, E., Van Wambeke, F., Uitz, J., Boss, E. S., Dimier, C., Dinasquet, J., Engel, A., Haëntjens, N., Pérez-Lorenzo, M., Taillandier, V., and Zäncker, B.: Deep maxima of phytoplankton biomass, primary production and bacterial production in the Mediterranean Sea, Biogeosciences, 18, 1749–1767, https://doi.org/10.5194/bg-18-1749-2021, 2021.
Martinez-Perez, C., Mohr, W., Loscher, C. R., Dekaezemacker, J., Littmann, S., Yilmaz, P., Lehnen, N., Fuchs, B. M., Lavik, G., Schmitz, R. A., LaRoche, J., and Kuypers, M. M.:
The small unicellular diazotrophic symbiont, UCYN-A, is a key player in the marine nitrogen cycle,
Nat. Microbiol.,
1, 16163, https://doi.org/10.1038/nmicrobiol.2016.163, 2016.
Mas, J. L., Martin, J., Pham, M. K., Chamizo, E., Miquel, J-C., Osvath, I., Povinec, P. P., Eriksson, M., and Villa-Alfageme, M.:
Analysis of a major Aeolian dust input event and its impact on element fluxes and inventories at the DYFAMED site (Northwestern Mediterranean),
Mar. Chem.,
223, 103792, https://doi.org/10.1016/j.marchem.2020.103792, 2020.
Mermex Group, De Madron, X. D., Guieu, C., Sempere, R., Conan, P., Cossa, D., D'Ortenzio, F., Estournel, C., Gazeau, F., Rabouille, C., Stemmann, L., Bonnet, S., Diaz, F., Koubbi, P., Radakovitch, O., Babin, M., Baklouti, M., Bancon-Montigny, C., Belviso, S., Bensoussan, N., Bonsang, B., Bouloubassi, I., Brunet, C., Cadiou, J. F., Carlotti, F., Chami, M., Charmasson, S., Charriere, B., Dachs, J., Doxaran, D., Dutay, J. C., Elbaz-Poulichet, F., Eleaume, M., Eyrolles, F., Fernandez, C., Fowler, S., Francour, P., Gaertner, J. C., Galzin, R., Gasparini, S., Ghiglione, J. F., Gonzalez, J. L., Goyet, C., Guidi, L., Guizien, K., Heimburger, L. E., Jacquet, S. H. M., Jeffrey, W. H., Joux, F., Le Hir, P., Leblanc, K., Lefevre, D., Lejeusne, C., Leme, R., Loye-Pilot, M. D., Mallet, M., Mejanelle, L., Melin, F., Mellon, C., Merigot, B., Merle, P. L., Migon, C., Miller, W. L., Mortier, L., Mostajir, B., Mousseau, L., Moutin, T., Para, J., Perez, T., Petrenko, A., Poggiale, J. C., Prieur, L., Pujo-Pay, M., Pulido, V., Raimbault, P., Rees, A. P., Ridame, C., Rontani, J. F., Pino, D. R., Sicre, M. A., Taillandier, V., Tamburini, C., Tanaka, T., Taupier-Letage, I., Tedetti, M., Testor, P., Thebault, H., Thouvenin, B., Touratier, F., Tronczynski, J., Ulses, C., Van Wambeke, F., Vantrepotte, V., Vaz, S., and Verney, R.:
Marine ecosystems' responses to climatic and anthropogenic forcings in the Mediterranean,
Prog. Oceanogr.,
91, 97–166, https://doi.org/10.1016/j.pocean.2011.02.003, 2011.
Messer, L. F., Doubell, M., Jeffries, T. C., Brown, M. V., and Seymour, J. R.:
Prokaryotic and diazotrophic population dynamics within a large oligotrophic inverse estuary,
Aquat. Microb. Ecol.,
74, 1–15, https://doi.org/10.3354/ame01726, 2015.
Mills, M. M., Turk-Kubo, K. A., van Dijken, G. L., Henke, B. A., Harding, K., Wilson, S. T., Arrigo K. R., and Zehr, J. P.:
Unusual marine cyanobacteria/haptophyte symbiosis relies on N2 fixation even in N-rich environments,
ISME J.,
14, 2395–2406, https://doi.org/10.1038/s41396-020-0691-6, 2020.
Mohr, W., Grosskopf, T., Wallace, D. R. W., and LaRoche, J.:
Methodological underestimation of oceanic nitrogen fixation rates,
PLoS One,
5, 1–7, https://doi.org/10.1371/journal.pone.0012583, 2010.
Moisander, P. H., Beinart, R. A., Hewson, I., White, A. E., Johnson, K. S., Carlson, C. A., Montoya, J. P., and Zehr, J. P.:
Unicellular cyanobacterial distributions broaden the oceanic N2 fixation domain,
Science, 327,
5972, 1512–1514, https://doi.org/10.1126/science.1185468, 2010.
Moisander, P. H., Serros, T., Paerl, R. W., Beinart, R. A., Zehr, J. P.:
Gammaproteobacterial diazotrophs and nifH gene expression in surface waters of the South Pacific Ocean,
ISME J.,
8, 1962–1973, https://doi.org/10.1038/ismej.2014.49, 2014.
Montoya, J. P., Voss, M., Kahler, P., and Capone, D. G.:
A simple, high-precision, high-sensitivity tracer assay for N2 fixation,
Appl. Environ. Microb.,
62, 986–993, https://doi.org/10.1128/AEM.62.3.986-993.1996, 1996.
Moreira-Coello, V., Mouriño-Carballido, B., Marañón, E., Fernández-Carrera, A., Bode, A., and Varela, M. M.:
Biological N2 Fixation in the Upwelling Region off NW Iberia: Magnitude, Relevance, and Players,
Front. Mar. Sci.,
4, 303, https://doi.org/10.3389/fmars.2017.00303, 2017.
Moreira-Coello, V., Mouriño-Carballido, B., Marañón, E., Fernández-Carrera, A. Bode, A., Sintes, E., Zehr, J. P., Turk-Kubo, K., and Varela, M. M.:
Temporal variability of diazotroph community composition in the upwelling region off NW Iberia,
Sci. Rep.-UK,
9, 3737, https://doi.org/10.1038/s41598-019-39586-4, 2019.
Moulin, C. and Chiapello, I.:
Impact of human-induced desertification on the intensification of Sahel dust emission and export over the last decades,
Geophys. Res. Lett.,
33, L18808, https://doi.org/10.1029/2006GL025923, 2006.
Moynihan, M. A.:
nifHdada2 GitHub repository,
Zenodo,
https://doi.org/10.5281/zenodo.3958370, 2020.
Paerl, R. W., Hansen, T. N. G., Henriksen, N. S. E., Olesen, A. K., and Riemann, L.:
N-fixation and related O2 constraints on model marine diazotroph Pseudomonas stutzeri BAL361,
Aquat. Microb. Ecol.,
81, 125–136, https://doi.org/10.3354/ame01867, 2018.
Pierella Karlusich, J. J., Pelletier, E., Lombard, F., Carsique, M., Dvorak, E., Colin, S., Picheral, M., Cornejo-Castillo, F. M., Acinas, S. G., Pepperkok, R., Karsenti, E., de Vargas, C., Wincker, P., Bowler, C., and Foster, R. A.:
Global distribution patterns of marine nitrogen-fixers by imaging and molecular methods,
Nat. Commun.,
12, 4160, https://doi.org/10.1038/s41467-021-24299-y, 2021.
Pulido-Villena, E., Wagener, T., and Guieu, C.:
Bacterial response to dust pulses in the western Mediterranean: Implications for carbon cycling in the oligotrophic ocean,
Global Biogeochem. Cy.,
22, GB1020, https://doi.org/10.1029/2007GB003091, 2008.
Pulido-Villena, E., Rérolle, V., and Guieu, C.:
Transient fertilizing effect of dust in P-deficient LNLC surface ocean,
Geophys. Res. Lett.,
37, L01603, https://doi.org/10.1029/2009GL041415, 2010.
Pulido-Villena, E., Baudoux, A.-C., Obernosterer, I., Landa, M., Caparros, J., Catala, P., Georges, C., Harmand, J., and Guieu, C.: Microbial food web dynamics in response to a Saharan dust event: results from a mesocosm study in the oligotrophic Mediterranean Sea, Biogeosciences, 11, 5607–5619, https://doi.org/10.5194/bg-11-5607-2014, 2014.
Pulido-Villena, E., Desboeufs, K., Djaoudi, K., Van Wambeke, F., Barrillon, S., Doglioli, A., Petrenko, A., Taillandier, V., Fu, F., Gaillard, T., Guasco, S., Nunige, S., Triquet, S., and Guieu, C.: Phosphorus cycling in the upper waters of the Mediterranean Sea (PEACETIME cruise): relative contribution of external and internal sources, Biogeosciences, 18, 5871–5889, https://doi.org/10.5194/bg-18-5871-2021, 2021.
Rahav, E., Herut, B., Levi, A., Mulholland, M. R., and Berman-Frank, I.: Springtime contribution of dinitrogen fixation to primary production across the Mediterranean Sea, Ocean Sci., 9, 489–498, https://doi.org/10.5194/os-9-489-2013, 2013.
Rahav, E., Shun-Yan, C., Cui, G., Liu, H., Tsagaraki, T. M., Giannakourou, A., Tsiola, A., Psarra, S., Lagaria, A., Mulholland, M. R., Stathopoulou, E., Paraskevi, P., Herut, B., and Berman-Frank, I.:
Evaluating the impact of atmospheric depositions on springtime dinitrogen fixation in the Cretan Sea (eastern Mediterranean)—A mesocosm approach,
Front. Mar. Sci.,
3, 180, https://doi.org/10.3389/fmars.2016.00180, 2016a.
Rahav, E., Giannetto, J. M., and Bar-Zeev,E.:
Contribution of mono and polysaccharides to heterotrophic N2 fixation at the eastern Mediterranean coastline,
Sci. Rep.-UK,
6, 27858, https://doi.org/10.1038/srep27858, 2016b.
Rees, A. P., Law, C. S., and Woodward, E. M. S.:
High rates of nitrogen fixation during an in-situ phosphate release experiment in the Eastern Mediterranean Sea,
Geophys. Res. Lett.,
33, L10607, https://doi.org/10.1029/2006GL025791, 2006.
Rees, A. P., Turk-Kubo, K. A., Al-Moosawi, L., Alliouane, S., Gazeau, F., Hogan, M. E. and Zehr, J. P.:
Ocean acidification impacts on nitrogen fixation in the coastal western Mediterranean Sea,
Estuar. Coast. Shelf S.,
186, 45–57, https://doi.org/10.1016/j.ecss.2016.01.020, 2017.
Ridame, C., Le Moal, M., Guieu, C., Ternon, E., Biegala, I. C., L'Helguen, S., and Pujo-Pay, M.: Nutrient control of N2 fixation in the oligotrophic Mediterranean Sea and the impact of Saharan dust events, Biogeosciences, 8, 2773–2783, https://doi.org/10.5194/bg-8-2773-2011, 2011.
Ridame, C., Guieu, C., and L'Helguen, S.: Strong stimulation of N2 fixation in oligotrophic Mediterranean Sea: results from dust addition in large in situ mesocosms, Biogeosciences, 10, 7333–7346, https://doi.org/10.5194/bg-10-7333-2013, 2013.
Ridame, C., Dekaezemacker, J., Guieu, C., Bonnet, S., L'Helguen, S., and Malien, F.: Contrasted Saharan dust events in LNLC environments: impact on nutrient dynamics and primary production, Biogeosciences, 11, 4783–4800, https://doi.org/10.5194/bg-11-4783-2014, 2014.
Robidart, J., Church, M., Ryan, J., Ascani, F., Wilson, S. T., Bombar, D., Marin III, R., Richards, K. J., Karl, D. M., Scholin, C. A., and Zehr, J. P.:
Ecogenomic sensor reveals controls on N2-fixing microorganisms in the North Pacific Ocean,
ISME J.,
8, 1175–1185, https://doi.org/10.1038/ismej.2013.244, 2014.
Roy-Barman, M., Foliot, L., Douville, E., Leblond, N., Gazeau, F., Bressac, M., Wagener, T., Ridame, C., Desboeufs, K., and Guieu, C.: Contrasted release of insoluble elements (Fe, Al, rare earth elements, Th, Pa) after dust deposition in seawater: a tank experiment approach, Biogeosciences, 18, 2663–2678, https://doi.org/10.5194/bg-18-2663-2021, 2021.
Sherr, E. B., Sherr, B. F., and Sigmon, C. T.:
Activity of marine bacteria under incubated and in situ conditions,
Aquat. Microb. Ecol.,
20, 213–223, 1999.
Siokou-Frangou, I., Christaki, U., Mazzocchi, M. G., Montresor, M., Ribera d'Alcalá, M., Vaqué, D., and Zingone, A.: Plankton in the open Mediterranean Sea: a review, Biogeosciences, 7, 1543–1586, https://doi.org/10.5194/bg-7-1543-2010, 2010.
Smith, D. C. and Azam, F.:
A simple, economical method for measuring bacterial protein synthesis rates in sea water using 3H-Leucine,
Mar. Microb. Food Webs,
6, 107–114, 1992.
Somot, S., Sevault, F., Deque, M., and Crepon, M.:
21st century climate change scenario for the Mediterranean using a coupled atmosphere – ocean regional climate model,
Global Planet. Change,
63, 112–126, https://doi.org/10.1016/j.gloplacha.2007.10.003, 2008.
Tang, W., Wang, S., Fonseca-Batista, D., Dehairs, F., Gifford, S., Gonzalez, A. G., Gallinari, M., Planquette, H., Sarthou, G., and Cassar, N.:
Revisiting the distribution of oceanic N2 fixation and estimating diazotrophic contribution to marine production,
Nat. Commun.,
10, 831, https://doi.org/10.1038/s41467-019-08640-0, 2019.
Tegen, I., Werner, M., Harrison, S. P., and Kohfeld, K. E.:
Relative importance of climate and land use in determining present and future global soil dust emissions,
Geophys. Res. Lett.,
31, L05105, https://doi.org/10.1029/2003GL019216, 2004.
Ternon, E., Guieu, C., Ridame, C., L'Helguen, S., and Catala, P.: Longitudinal variability of the biogeochemical role of Mediterranean aerosols in the Mediterranean Sea, Biogeosciences, 8, 1067–1080, https://doi.org/10.5194/bg-8-1067-2011, 2011.
Thompson, A., Carter, B. J., Turk-Kubo, K., Malfatti, F., Azam, F., and Zehr, J. P.:
Genetic diversity of the unicellular nitrogen-fixing cyanobacteria UCYN-A and its prymnesiophyte host,
Environ. Microbiol.,
16, 3238–3249, https://doi.org/10.1111/1462-2920.12490, 2014.
Thompson, A. W., Foster, R. A., Krupke, A., Carter, B. J., Musat, N., Vaulot, D., Kuypers, M. M. M., and Zehr, J. P.:
Unicellular cyanobacterium symbiotic with a single-celled eukaryotic alga,
Science,
337, 1546–1550, https://doi.org/10.1126/science.1222700, 2012.
Tovar-Sánchez, A., Rodríguez-Romero, A., Engel, A., Zäncker, B., Fu, F., Marañón, E., Pérez-Lorenzo, M., Bressac, M., Wagener, T., Triquet, S., Siour, G., Desboeufs, K., and Guieu, C.: Characterizing the surface microlayer in the Mediterranean Sea: trace metal concentrations and microbial plankton abundance, Biogeosciences, 17, 2349–2364, https://doi.org/10.5194/bg-17-2349-2020, 2020.
Tripp, H. J., Bench, S. R., Turk, K. A., Foster, R. A., Desany, B. A., Niazi, F., Affourtit, J. P., and Zehr, J. P.:
Metabolic streamlining in an open-ocean nitrogen-fixing cyanobacterium,
Nature,
464, 90–94, https://doi.org/10.1038/nature08786, 2010.
Tuit, C., Waterbury, J., and Ravizza, G.:
Diel variation of molybdenum and iron in marine diazotrophic cyanobacteria,
Limnol. Oceanogr.,
49, 978–990, https://doi.org/10.4319/lo.2004.49.4.0978, 2004.
Turk-Kubo, K. A., Karamchandani, M., Capone, D. G., and Zehr, J. P.:
The paradox of marine heterotrophic nitrogen fixation: abundances of heterotrophic diazotrophs do not account for nitrogen fixation rates in the Eastern Tropical South Pacific,
Environ. Microbiol.,
16, 3095–3114, https://doi.org/10.1111/1462-2920.12346, 2014.
Turk-Kubo, K. A., Farnelid, H. M., Shilova, I. N., Henke, B., and Zehr, J. P.:
Distinct ecological niches of marine symbiotic N2-fixing cyanobacterium Candidatus Atelocyanobacterium thalassa sublineages,
J. Phycol.,
53, 2, 451–461, https://doi.org/10.1111/jpy.12505, 2017.
Van Wambeke, F., Taillandier, V., Desboeufs, K., Pulido-Villena, E., Dinasquet, J., Engel, A., Marañón, E., Ridame, C., and Guieu, C.: Influence of atmospheric deposition on biogeochemical cycles in an oligotrophic ocean system, Biogeosciences, 18, 5699–5717, https://doi.org/10.5194/bg-18-5699-2021, 2021.
Wang, Q., Quensen, J. F., Fish, J. A., Lee, T. K., Sun, Y., Tiedje, J. M., and Cole, J. R.:
Ecological patterns of nifH genes in four terrestrial climatic zones explored with targeted metagenomics using FrameBot, a new informatics tool,
MBio,
4, e00592-13, https://doi.org/10.1128/mBio.00592-13, 2013.
Webb, E. A., Ehrenreich, I. A., Brown, S. L., Valois, F. W., and Waterbury, J. B.:
Phenotypic and genotypic characterization of multiple strains of the diazotrophic cyanobacterium, Crocosphaera watsonii, isolated from the open ocean,
Environ. Microbiol.,
11, 2, 338–348, https://doi.org/10.1111/j.1462-2920.2008.01771.x, 2008.
Yogev, T., Rahav, E., Bar-Zeev, E., Man-Aharonovich, D., Stambler, N., Kress, N., Béjà, O., Mulholland, M. R., Herut, B., and Berman-Frank, I.:
Is dinitrogen fixation significant in the Levantine Basin, East Mediterranean Sea?,
Environ. Microbiol.,
13, 4, 854–871, https://doi.org/10.1111/j.1462-2920.2010.02402.x, 2011.
Zehr, J. P., Mellon, M. T., and Zani, S.:
New nitrogen fixing microorganisms detected in oligotrophic oceans by the amplification of nitrogenase (nifH) genes,
Appl. Environ. Microb.,
64, 3444–3450, https://doi.org/10.1128/AEM.64.9.3444-3450.1998, 1998.
Zehr, J. P., Bench, S. R., Carter, B. J., Hewson, I. and Niazi, F.:
Globally Distributed Uncultivated Oceanic N2-Fixing Cyanobacteria Lack Oxygenic Photosystem II,
Science,
322, 1110, https://doi.org/10.1126/science.1165340, 2008.
Short summary
We show that in the Mediterranean Sea spatial variability in N2 fixation is related to the diazotrophic community composition reflecting different nutrient requirements among species. Nutrient supply by Saharan dust is of great importance to diazotrophs, as shown by the strong stimulation of N2 fixation after a simulated dust event under present and future climate conditions; the magnitude of stimulation depends on the degree of limitation related to the diazotrophic community composition.
We show that in the Mediterranean Sea spatial variability in N2 fixation is related to the...
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