Articles | Volume 20, issue 23
https://doi.org/10.5194/bg-20-4737-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-20-4737-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
29 Nov 2023
Research article |
| 29 Nov 2023
| 29 Nov 2023
Dark septate endophytic fungi associated with pioneer grass inhabiting volcanic deposits and their functions in promoting plant growth
Han Sun
CORRESPONDING AUTHOR
United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu-shi, Tokyo 183-8509, Japan
College of Agriculture, Ibaraki University, 3-21-1 Chuo, Ami-machi, Ibaraki 300-0393, Japan
Tomoyasu Nishizawa
United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu-shi, Tokyo 183-8509, Japan
College of Agriculture, Ibaraki University, 3-21-1 Chuo, Ami-machi, Ibaraki 300-0393, Japan
Hiroyuki Ohta
United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu-shi, Tokyo 183-8509, Japan
College of Agriculture, Ibaraki University, 3-21-1 Chuo, Ami-machi, Ibaraki 300-0393, Japan
Kazuhiko Narisawa
United Graduate School of Agricultural Science, Tokyo University of Agriculture and Technology, 3-5-8 Saiwai-cho, Fuchu-shi, Tokyo 183-8509, Japan
College of Agriculture, Ibaraki University, 3-21-1 Chuo, Ami-machi, Ibaraki 300-0393, Japan
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Violeta Mendoza-Martinez, Scott L. Collins, and Jennie R. McLaren
Biogeosciences, 21, 2655–2667, https://doi.org/10.5194/bg-21-2655-2024, https://doi.org/10.5194/bg-21-2655-2024, 2024
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We examine the impacts of multi-decadal nitrogen additions on a dryland ecosystem N budget, including the soil, microbial, and plant N pools. After 26 years, there appears to be little impact on the soil microbial or plant community and only minimal increases in N pools within the soil. While perhaps encouraging from a conservation standpoint, we calculate that greater than 95 % of the nitrogen added to the system is not retained and is instead either lost deeper in the soil or emitted as gas.
Sean Fettrow, Andrew Wozniak, Holly A. Michael, and Angelia L. Seyfferth
Biogeosciences, 21, 2367–2384, https://doi.org/10.5194/bg-21-2367-2024, https://doi.org/10.5194/bg-21-2367-2024, 2024
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Biogeosciences, 21, 1277–1299, https://doi.org/10.5194/bg-21-1277-2024, https://doi.org/10.5194/bg-21-1277-2024, 2024
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EGUsphere, https://doi.org/10.5194/egusphere-2024-578, https://doi.org/10.5194/egusphere-2024-578, 2024
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Because of its importance for climate regulation and soil health, many studies are focusing on carbon dynamics in soils. However, quantifying organic and inorganic carbon remains an issue in carbonated soils. In this technical note, we propose a validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis. With this correction, Rock-Eval® method has the potential to become the standard method for quantifying carbon in carbonate soils.
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Biogeosciences, 21, 1037–1059, https://doi.org/10.5194/bg-21-1037-2024, https://doi.org/10.5194/bg-21-1037-2024, 2024
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Haoli Zhang, Doudou Chang, Zhifeng Zhu, Chunmei Meng, and Kaiyong Wang
Biogeosciences, 21, 1–11, https://doi.org/10.5194/bg-21-1-2024, https://doi.org/10.5194/bg-21-1-2024, 2024
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Soil salinity mediates microorganisms and soil processes like soil organic carbon (SOC) cycling. We observed that negative priming effects at the early stages might be due to the preferential utilization of cottonseed meal. The positive priming that followed decreased with the increase in salinity.
Joséphine Hazera, David Sebag, Isabelle Kowalewski, Eric Verrecchia, Herman Ravelojaona, and Tiphaine Chevallier
Biogeosciences, 20, 5229–5242, https://doi.org/10.5194/bg-20-5229-2023, https://doi.org/10.5194/bg-20-5229-2023, 2023
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This study adapts the Rock-Eval® protocol to quantify soil organic carbon (SOC) and soil inorganic carbon (SIC) on a non-pretreated soil aliquot. The standard protocol properly estimates SOC contents once the TOC parameter is corrected. However, it cannot complete the thermal breakdown of SIC amounts > 4 mg, leading to an underestimation of high SIC contents by the MinC parameter, even after correcting for this. Thus, the final oxidation isotherm is extended to 7 min to quantify any SIC amount.
Bo Zhao, Amin Dou, Zhiwei Zhang, Zhenyu Chen, Wenbo Sun, Yanli Feng, Xiaojuan Wang, and Qiang Wang
Biogeosciences, 20, 4761–4774, https://doi.org/10.5194/bg-20-4761-2023, https://doi.org/10.5194/bg-20-4761-2023, 2023
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This study provided a comprehensive analysis of the spatial variability and determinants of Fe-bound organic carbon (Fe-OC) among terrestrial, wetland, and marine ecosystems and its governing factors globally. We illustrated that reactive Fe was not only an important sequestration mechanism for OC in terrestrial ecosystems but also an effective “rusty sink” of OC preservation in wetland and marine ecosystems, i.e., a key factor for long-term OC storage in global ecosystems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
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We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Imane Slimani, Xia Zhu-Barker, Patricia Lazicki, and William Horwath
Biogeosciences, 20, 3873–3894, https://doi.org/10.5194/bg-20-3873-2023, https://doi.org/10.5194/bg-20-3873-2023, 2023
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There is a strong link between nitrogen availability and iron minerals in soils. These minerals have multiple outcomes for nitrogen availability depending on soil conditions and properties. For example, iron can limit microbial degradation of nitrogen in aerated soils but has opposing outcomes in non-aerated soils. This paper focuses on the multiple ways iron can affect nitrogen bioavailability in soils.
Peter Levy, Laura Bentley, Bridget Emmett, Angus Garbutt, Aidan Keith, Inma Lebron, and David Robinson
EGUsphere, https://doi.org/10.5194/egusphere-2023-1681, https://doi.org/10.5194/egusphere-2023-1681, 2023
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We collated a large data set (15790 soil cores) on soil carbon stock in different land uses. Soil carbon stocks were highest in woodlands and lowest in croplands. The variability in the effects were large. This has important implications for agri-environment schemes, seeking to sequester carbon in the soil by altering land use, because the effect of a given intervention is very hard to verify.
Shane W. Stoner, Marion Schrumpf, Alison Hoyt, Carlos A. Sierra, Sebastian Doetterl, Valier Galy, and Susan Trumbore
Biogeosciences, 20, 3151–3163, https://doi.org/10.5194/bg-20-3151-2023, https://doi.org/10.5194/bg-20-3151-2023, 2023
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Soils store more carbon (C) than any other terrestrial C reservoir, but the processes that control how much C stays in soil, and for how long, are very complex. Here, we used a recent method that involves heating soil in the lab to measure the range of C ages in soil. We found that most C in soil is decades to centuries old, while some stays for much shorter times (days to months), and some is thousands of years old. Such detail helps us to estimate how soil C may react to changing climate.
Adetunji Alex Adekanmbi, Laurence Dale, Liz Shaw, and Tom Sizmur
Biogeosciences, 20, 2207–2219, https://doi.org/10.5194/bg-20-2207-2023, https://doi.org/10.5194/bg-20-2207-2023, 2023
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The decomposition of soil organic matter and flux of carbon dioxide are expected to increase as temperatures rise. However, soil organic matter decomposition is a two-step process whereby large molecules are first broken down outside microbial cells and then respired within microbial cells. We show here that these two steps are not equally sensitive to increases in soil temperature and that global warming may cause a shift in the rate-limiting step from outside to inside the microbial cell.
Mercedes Román Dobarco, Alexandre M. J-C. Wadoux, Brendan Malone, Budiman Minasny, Alex B. McBratney, and Ross Searle
Biogeosciences, 20, 1559–1586, https://doi.org/10.5194/bg-20-1559-2023, https://doi.org/10.5194/bg-20-1559-2023, 2023
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Soil organic carbon (SOC) is of a heterogeneous nature and varies in chemistry, stabilisation mechanisms, and persistence in soil. In this study we mapped the stocks of SOC fractions with different characteristics and turnover rates (presumably PyOC >= MAOC > POC) across Australia, combining spectroscopy and digital soil mapping. The SOC stocks (0–30 cm) were estimated as 13 Pg MAOC, 2 Pg POC, and 5 Pg PyOC.
Frederick Büks
Biogeosciences, 20, 1529–1535, https://doi.org/10.5194/bg-20-1529-2023, https://doi.org/10.5194/bg-20-1529-2023, 2023
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Ultrasonication with density fractionation of soils is a commonly used method to separate soil organic matter pools, which is, e.g., important to calculate carbon turnover in landscapes. It is shown that the approach that merges soil and dense solution without mixing has a low recovery rate and causes co-extraction of parts of the retained labile pool along with the intermediate pool. An alternative method with high recovery rates and no cross-contamination was recommended.
Tino Peplau, Christopher Poeplau, Edward Gregorich, and Julia Schroeder
Biogeosciences, 20, 1063–1074, https://doi.org/10.5194/bg-20-1063-2023, https://doi.org/10.5194/bg-20-1063-2023, 2023
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We buried tea bags and temperature loggers in a paired-plot design in soils under forest and agricultural land and retrieved them after 2 years to quantify the effect of land-use change on soil temperature and litter decomposition in subarctic agricultural systems. We could show that agricultural soils were on average 2 °C warmer than forests and that litter decomposition was enhanced. The results imply that deforestation amplifies effects of climate change on soil organic matter dynamics.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
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The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Johanna Pihlblad, Louise C. Andresen, Catriona A. Macdonald, David S. Ellsworth, and Yolima Carrillo
Biogeosciences, 20, 505–521, https://doi.org/10.5194/bg-20-505-2023, https://doi.org/10.5194/bg-20-505-2023, 2023
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Elevated CO2 in the atmosphere increases forest biomass productivity when growth is not limited by soil nutrients. This study explores how mature trees stimulate soil availability of nitrogen and phosphorus with free-air carbon dioxide enrichment after 5 years of fumigation. We found that both nutrient availability and processes feeding available pools increased in the rhizosphere, and phosphorus increased at depth. This appears to not be by decomposition but by faster recycling of nutrients.
Rodrigo Vargas and Van Huong Le
Biogeosciences, 20, 15–26, https://doi.org/10.5194/bg-20-15-2023, https://doi.org/10.5194/bg-20-15-2023, 2023
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Quantifying the role of soils in nature-based solutions requires accurate estimates of soil greenhouse gas (GHG) fluxes. We suggest that multiple GHG fluxes should not be simultaneously measured at a few fixed time intervals, but an optimized sampling approach can reduce bias and uncertainty. Our results have implications for assessing GHG fluxes from soils and a better understanding of the role of soils in nature-based solutions.
Kristine Karstens, Benjamin Leon Bodirsky, Jan Philipp Dietrich, Marta Dondini, Jens Heinke, Matthias Kuhnert, Christoph Müller, Susanne Rolinski, Pete Smith, Isabelle Weindl, Hermann Lotze-Campen, and Alexander Popp
Biogeosciences, 19, 5125–5149, https://doi.org/10.5194/bg-19-5125-2022, https://doi.org/10.5194/bg-19-5125-2022, 2022
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Soil organic carbon (SOC) has been depleted by anthropogenic land cover change and agricultural management. While SOC models often simulate detailed biochemical processes, the management decisions are still little investigated at the global scale. We estimate that soils have lost around 26 GtC relative to a counterfactual natural state in 1975. Yet, since 1975, SOC has been increasing again by 4 GtC due to a higher productivity, recycling of crop residues and manure, and no-tillage practices.
Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari Laurén
Biogeosciences, 19, 5041–5058, https://doi.org/10.5194/bg-19-5041-2022, https://doi.org/10.5194/bg-19-5041-2022, 2022
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Peatlands are large carbon stocks. Emissions of carbon dioxide and methane from peatlands may increase due to changes in management and climate. We studied the variation in the gas diffusivity of peat with depth using pore network simulations and laboratory experiments. Gas diffusivity was found to be lower in deeper peat with smaller pores and lower pore connectivity. However, gas diffusivity was not extremely low in wet conditions, which may reflect the distinctive structure of peat.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
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Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Giuseppe Cipolla, Salvatore Calabrese, Amilcare Porporato, and Leonardo V. Noto
Biogeosciences, 19, 3877–3896, https://doi.org/10.5194/bg-19-3877-2022, https://doi.org/10.5194/bg-19-3877-2022, 2022
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Enhanced weathering (EW) is a promising strategy for carbon sequestration. Since models may help to characterize field EW, the present work applies a hydro-biogeochemical model to four case studies characterized by different rainfall seasonality, vegetation and soil type. Rainfall seasonality strongly affects EW dynamics, but low carbon sequestration suggests that an in-depth analysis at the global scale is required to see if EW may be effective to mitigate climate change.
Vao Fenotiana Razanamahandry, Marjolein Dewaele, Gerard Govers, Liesa Brosens, Benjamin Campforts, Liesbet Jacobs, Tantely Razafimbelo, Tovonarivo Rafolisy, and Steven Bouillon
Biogeosciences, 19, 3825–3841, https://doi.org/10.5194/bg-19-3825-2022, https://doi.org/10.5194/bg-19-3825-2022, 2022
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In order to shed light on possible past vegetation shifts in the Central Highlands of Madagascar, we measured stable isotope ratios of organic carbon in soil profiles along both forested and grassland hillslope transects in the Lake Alaotra region. Our results show that the landscape of this region was more forested in the past: soils in the C4-dominated grasslands contained a substantial fraction of C3-derived carbon, increasing with depth.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
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Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Alessandro Montemagno, Christophe Hissler, Victor Bense, Adriaan J. Teuling, Johanna Ziebel, and Laurent Pfister
Biogeosciences, 19, 3111–3129, https://doi.org/10.5194/bg-19-3111-2022, https://doi.org/10.5194/bg-19-3111-2022, 2022
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We investigated the biogeochemical processes that dominate the release and retention of elements (nutrients and potentially toxic elements) during litter degradation. Our results show that toxic elements are retained in the litter, while nutrients are released in solution during the first stages of degradation. This seems linked to the capability of trees to distribute the elements between degradation-resistant and non-degradation-resistant compounds of leaves according to their chemical nature.
Laura Sereni, Bertrand Guenet, Charlotte Blasi, Olivier Crouzet, Jean-Christophe Lata, and Isabelle Lamy
Biogeosciences, 19, 2953–2968, https://doi.org/10.5194/bg-19-2953-2022, https://doi.org/10.5194/bg-19-2953-2022, 2022
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This study focused on the modellisation of two important drivers of soil greenhouse gas emissions: soil contamination and soil moisture change. The aim was to include a Cu function in the soil biogeochemical model DNDC for different soil moisture conditions and then to estimate variation in N2O, NO2 or NOx emissions. Our results show a larger effect of Cu on N2 and N2O emissions than on the other nitrogen species and a higher effect for the soils incubated under constant constant moisture.
Marie Spohn and Johan Stendahl
Biogeosciences, 19, 2171–2186, https://doi.org/10.5194/bg-19-2171-2022, https://doi.org/10.5194/bg-19-2171-2022, 2022
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We explored the ratios of carbon (C), nitrogen (N), and phosphorus (P) of organic matter in Swedish forest soils. The N : P ratio of the organic layer was most strongly related to the mean annual temperature, while the C : N ratios of the organic layer and mineral soil were strongly related to tree species even in the subsoil. The organic P concentration in the mineral soil was strongly affected by soil texture, which diminished the effect of tree species on the C to organic P (C : OP) ratio.
Moritz Mainka, Laura Summerauer, Daniel Wasner, Gina Garland, Marco Griepentrog, Asmeret Asefaw Berhe, and Sebastian Doetterl
Biogeosciences, 19, 1675–1689, https://doi.org/10.5194/bg-19-1675-2022, https://doi.org/10.5194/bg-19-1675-2022, 2022
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The largest share of terrestrial carbon is stored in soils, making them highly relevant as regards global change. Yet, the mechanisms governing soil carbon stabilization are not well understood. The present study contributes to a better understanding of these processes. We show that qualitative changes in soil organic matter (SOM) co-vary with alterations of the soil matrix following soil weathering. Hence, the type of SOM that is stabilized in soils might change as soils develop.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
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As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Karis J. McFarlane, Heather M. Throckmorton, Jeffrey M. Heikoop, Brent D. Newman, Alexandra L. Hedgpeth, Marisa N. Repasch, Thomas P. Guilderson, and Cathy J. Wilson
Biogeosciences, 19, 1211–1223, https://doi.org/10.5194/bg-19-1211-2022, https://doi.org/10.5194/bg-19-1211-2022, 2022
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Planetary warming is increasing seasonal thaw of permafrost, making this extensive old carbon stock vulnerable. In northern Alaska, we found more and older dissolved organic carbon in small drainages later in summer as more permafrost was exposed by deepening thaw. Younger and older carbon did not differ in chemical indicators related to biological lability suggesting this carbon can cycle through aquatic systems and contribute to greenhouse gas emissions as warming increases permafrost thaw.
Pengzhi Zhao, Daniel Joseph Fallu, Sara Cucchiaro, Paolo Tarolli, Clive Waddington, David Cockcroft, Lisa Snape, Andreas Lang, Sebastian Doetterl, Antony G. Brown, and Kristof Van Oost
Biogeosciences, 18, 6301–6312, https://doi.org/10.5194/bg-18-6301-2021, https://doi.org/10.5194/bg-18-6301-2021, 2021
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We investigate the factors controlling the soil organic carbon (SOC) stability and temperature sensitivity of abandoned prehistoric agricultural terrace soils. Results suggest that the burial of former topsoil due to terracing provided an SOC stabilization mechanism. Both the soil C : N ratio and SOC mineral protection regulate soil SOC temperature sensitivity. However, which mechanism predominantly controls SOC temperature sensitivity depends on the age of the buried terrace soils.
Heleen Deroo, Masuda Akter, Samuel Bodé, Orly Mendoza, Haichao Li, Pascal Boeckx, and Steven Sleutel
Biogeosciences, 18, 5035–5051, https://doi.org/10.5194/bg-18-5035-2021, https://doi.org/10.5194/bg-18-5035-2021, 2021
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We assessed if and how incorporation of exogenous organic carbon (OC) such as straw could affect decomposition of native soil organic carbon (SOC) under different irrigation regimes. Addition of exogenous OC promoted dissolution of native SOC, partly because of increased Fe reduction, leading to more net release of Fe-bound SOC. Yet, there was no proportionate priming of SOC-derived DOC mineralisation. Water-saving irrigation can retard both priming of SOC dissolution and mineralisation.
Frances A. Podrebarac, Sharon A. Billings, Kate A. Edwards, Jérôme Laganière, Matthew J. Norwood, and Susan E. Ziegler
Biogeosciences, 18, 4755–4772, https://doi.org/10.5194/bg-18-4755-2021, https://doi.org/10.5194/bg-18-4755-2021, 2021
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Soil respiration is a large and temperature-responsive flux in the global carbon cycle. We found increases in microbial use of easy to degrade substrates enhanced the temperature response of respiration in soils layered as they are in situ. This enhanced response is consistent with soil composition differences in warm relative to cold climate forests. These results highlight the importance of the intact nature of soils rarely studied in regulating responses of CO2 fluxes to changing temperature.
Elisa Bruni, Bertrand Guenet, Yuanyuan Huang, Hugues Clivot, Iñigo Virto, Roberta Farina, Thomas Kätterer, Philippe Ciais, Manuel Martin, and Claire Chenu
Biogeosciences, 18, 3981–4004, https://doi.org/10.5194/bg-18-3981-2021, https://doi.org/10.5194/bg-18-3981-2021, 2021
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Increasing soil organic carbon (SOC) stocks is beneficial for climate change mitigation and food security. One way to enhance SOC stocks is to increase carbon input to the soil. We estimate the amount of carbon input required to reach a 4 % annual increase in SOC stocks in 14 long-term agricultural experiments around Europe. We found that annual carbon input should increase by 43 % under current temperature conditions, by 54 % for a 1 °C warming scenario and by 120 % for a 5 °C warming scenario.
Rainer Brumme, Bernd Ahrends, Joachim Block, Christoph Schulz, Henning Meesenburg, Uwe Klinck, Markus Wagner, and Partap K. Khanna
Biogeosciences, 18, 3763–3779, https://doi.org/10.5194/bg-18-3763-2021, https://doi.org/10.5194/bg-18-3763-2021, 2021
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In order to study the fate of litter nitrogen in forest soils, we combined a leaf litterfall exchange experiment using 15N-labeled leaf litter with long-term element budgets at seven European beech sites in Germany. It appears that fructification intensity, which has increased in recent decades, has a distinct impact on N retention in forest soils. Despite reduced nitrogen deposition, about 6 and 10 kg ha−1 of nitrogen were retained annually in the soils and in the forest stands, respectively.
Lorenz Gfeller, Andrea Weber, Isabelle Worms, Vera I. Slaveykova, and Adrien Mestrot
Biogeosciences, 18, 3445–3465, https://doi.org/10.5194/bg-18-3445-2021, https://doi.org/10.5194/bg-18-3445-2021, 2021
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Our incubation experiment shows that flooding of polluted floodplain soils may induce pulses of both mercury (Hg) and methylmercury to the soil solution and threaten downstream ecosystems. We demonstrate that mobilization of Hg bound to manganese oxides is a relevant process in organic-matter-poor soils. Addition of organic amendments accelerates this mobilization but also facilitates the formation of nanoparticulate Hg and the subsequent fixation of Hg from soil solution to the soil.
Yao Zhang, Jocelyn M. Lavallee, Andy D. Robertson, Rebecca Even, Stephen M. Ogle, Keith Paustian, and M. Francesca Cotrufo
Biogeosciences, 18, 3147–3171, https://doi.org/10.5194/bg-18-3147-2021, https://doi.org/10.5194/bg-18-3147-2021, 2021
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Soil organic matter (SOM) is essential for the health of soils, and the accumulation of SOM helps removal of CO2 from the atmosphere. Here we present the result of the continued development of a mathematical model that simulates SOM and its measurable fractions. In this study, we simulated several grassland sites in the US, and the model generally captured the carbon and nitrogen amounts in SOM and their distribution between the measurable fractions throughout the entire soil profile.
Zhongkui Luo, Raphael A. Viscarra-Rossel, and Tian Qian
Biogeosciences, 18, 2063–2073, https://doi.org/10.5194/bg-18-2063-2021, https://doi.org/10.5194/bg-18-2063-2021, 2021
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Using the data from 141 584 whole-soil profiles across the globe, we disentangled the relative importance of biotic, climatic and edaphic variables in controlling global SOC stocks. The results suggested that soil properties and climate contributed similarly to the explained global variance of SOC in four sequential soil layers down to 2 m. However, the most important individual controls are consistently soil-related, challenging current climate-driven framework of SOC dynamics.
Debjani Sihi, Xiaofeng Xu, Mónica Salazar Ortiz, Christine S. O'Connell, Whendee L. Silver, Carla López-Lloreda, Julia M. Brenner, Ryan K. Quinn, Jana R. Phillips, Brent D. Newman, and Melanie A. Mayes
Biogeosciences, 18, 1769–1786, https://doi.org/10.5194/bg-18-1769-2021, https://doi.org/10.5194/bg-18-1769-2021, 2021
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Humid tropical soils are important sources and sinks of methane. We used model simulation to understand how different kinds of microbes and observed soil moisture and oxygen dynamics contribute to production and consumption of methane along a wet tropical hillslope during normal and drought conditions. Drought alters the diffusion of oxygen and microbial substrates into and out of soil microsites, resulting in enhanced methane release from the entire hillslope during drought recovery.
Mathieu Chassé, Suzanne Lutfalla, Lauric Cécillon, François Baudin, Samuel Abiven, Claire Chenu, and Pierre Barré
Biogeosciences, 18, 1703–1718, https://doi.org/10.5194/bg-18-1703-2021, https://doi.org/10.5194/bg-18-1703-2021, 2021
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Evolution of organic carbon content in soils could be a major driver of atmospheric greenhouse gas concentrations over the next century. Understanding factors controlling carbon persistence in soil is a challenge. Our study of unique long-term bare-fallow samples, depleted in labile organic carbon, helps improve the separation, evaluation and characterization of carbon pools with distinct residence time in soils and gives insight into the mechanisms explaining soil organic carbon persistence.
Melisa A. Diaz, Christopher B. Gardner, Susan A. Welch, W. Andrew Jackson, Byron J. Adams, Diana H. Wall, Ian D. Hogg, Noah Fierer, and W. Berry Lyons
Biogeosciences, 18, 1629–1644, https://doi.org/10.5194/bg-18-1629-2021, https://doi.org/10.5194/bg-18-1629-2021, 2021
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Water-soluble salt and nutrient concentrations of soils collected along the Shackleton Glacier, Antarctica, show distinct geochemical gradients related to latitude, longitude, elevation, soil moisture, and distance from coast and glacier. Machine learning algorithms were used to estimate geochemical gradients for the region given the relationship with geography. Geography and surface exposure age drive salt and nutrient abundances, influencing invertebrate habitat suitability and biogeography.
Marion Schrumpf, Klaus Kaiser, Allegra Mayer, Günter Hempel, and Susan Trumbore
Biogeosciences, 18, 1241–1257, https://doi.org/10.5194/bg-18-1241-2021, https://doi.org/10.5194/bg-18-1241-2021, 2021
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A large amount of organic carbon (OC) in soil is protected against decay by bonding to minerals. We studied the release of mineral-bonded OC by NaF–NaOH extraction and H2O2 oxidation. Unexpectedly, extraction and oxidation removed mineral-bonded OC at roughly constant portions and of similar age distributions, irrespective of mineral composition, land use, and soil depth. The results suggest uniform modes of interactions between OC and minerals across soils in quasi-steady state with inputs.
Lena Rohe, Bernd Apelt, Hans-Jörg Vogel, Reinhard Well, Gi-Mick Wu, and Steffen Schlüter
Biogeosciences, 18, 1185–1201, https://doi.org/10.5194/bg-18-1185-2021, https://doi.org/10.5194/bg-18-1185-2021, 2021
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Total denitrification, i.e. N2O and (N2O + N2) fluxes, of repacked soil cores were analysed for different combinations of soils and water contents. Prediction accuracy of (N2O + N2) fluxes was highest with combined proxies for oxygen demand (CO2 flux) and oxygen supply (anaerobic soil volume fraction). Knowledge of denitrification completeness (product ratio) improved N2O predictions. Substitutions with cheaper proxies (soil organic matter, empirical diffusivity) reduced prediction accuracy.
Severin-Luca Bellè, Asmeret Asefaw Berhe, Frank Hagedorn, Cristina Santin, Marcus Schiedung, Ilja van Meerveld, and Samuel Abiven
Biogeosciences, 18, 1105–1126, https://doi.org/10.5194/bg-18-1105-2021, https://doi.org/10.5194/bg-18-1105-2021, 2021
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Controls of pyrogenic carbon (PyC) redistribution under rainfall are largely unknown. However, PyC mobility can be substantial after initial rain in post-fire landscapes. We conducted a controlled simulation experiment on plots where PyC was applied on the soil surface. We identified redistribution of PyC by runoff and splash and vertical movement in the soil depending on soil texture and PyC characteristics (material and size). PyC also induced changes in exports of native soil organic carbon.
Michael Rinderer, Jaane Krüger, Friederike Lang, Heike Puhlmann, and Markus Weiler
Biogeosciences, 18, 1009–1027, https://doi.org/10.5194/bg-18-1009-2021, https://doi.org/10.5194/bg-18-1009-2021, 2021
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We quantified the lateral and vertical subsurface flow (SSF) and P concentrations of three beech forest plots with contrasting soil properties during sprinkling experiments. Vertical SSF was 2 orders of magnitude larger than lateral SSF, and both consisted mainly of pre-event water. P concentrations in SSF were high during the first 1 to 2 h (nutrient flushing) but nearly constant thereafter. This suggests that P in the soil solution was replenished fast by mineral or organic sources.
Cited articles
Addy, H. D., Hambleton, S., and Currah, R. S.: Distribution and molecular characterization of the root endophyte Phialocephala fortinii along an environmental gradient in the boreal forest of Alberta, Mycol. Res., 104, 1213–1221, https://doi.org/10.1017/S0953756200002896, 2000.
An, G.-H., Miyakawa, S., Kawahara, A., Osaki, M., and Ezawa, T.: Community structure of arbuscular mycorrhizal fungi associated with pioneer grass species Miscanthus sinensis in acid sulfate soils: Habitat segregation along pH gradients, Soil Sci. Plant Nutr., 54, 517–528, https://doi.org/10.1111/j.1747-0765.2008.00267.x, 2008.
Arnold, A. E., Henk, D. A., Eells, R. L., Lutzoni, F., and Vilgalys, R.: Diversity and phylogenetic affinities of foliar fungal endophytes in loblolly pine inferred by culturing and environmental PCR, Mycologia, 99, 185–206, https://doi.org/10.1080/15572536.2007.11832578, 2007.
Bai, Y., Müller, D. B., Srinivas, G., Garrido-Oter, R., Potthoff, E., Rott, M., Dombrowski, N., Münch, P. C., Spaepen, S., Remus-Emsermann, M., Hüttel, B., McHardy, A. C., Vorholt, J. A., and Schulze-Lefert, P.: Functional overlap of the Arabidopsis leaf and root microbiota, Nature, 528, 364–369, https://doi.org/10.1038/nature16192, 2015.
Bruzone, M. C., Fontenla, S. B., and Vohník, M.: Is the prominent ericoid mycorrhizal fungus Rhizoscyphus ericae absent in the Southern Hemisphere's Ericaceae? A case study on the diversity of root mycobionts in Gaultheria spp. from northwest Patagonia, Argentina, Mycorrhiza, 25, 25–40, https://doi.org/10.1007/s00572-014-0586-3, 2015.
Bultman, T. L., McNeill, M. R., and Goldson, S. L.: Isolate-dependent impacts of fungal endophytes in a multitrophic interaction, Oikos, 102, 491–496, https://doi.org/10.1034/j.1600-0706.2003.11477.x, 2003.
Busby, P. E., Ridout, M., and Newcombe, G.: Fungal endophytes: modifiers of plant disease, Plant Mol. Biol., 90, 645–655, https://doi.org/10.1007/s11103-015-0412-0, 2016.
Chen, J., Akutse, K. S., Saqib, H. S. A., Wu, X., Yang, F., Xia, X., Wang, L., Goettel, M. S., You, M., and Gurr, G. M.: Fungal Endophyte Communities of Crucifer Crops Are Seasonally Dynamic and Structured by Plant Identity, Plant Tissue and Environmental Factors, Front. Microbiol., 11, 1519, https://doi.org/10.3389/fmicb.2020.01519, 2020.
Chen, Y., Liu, F., Kang, L., Zhang, D., Kou, D., Mao, C., Qin, S., Zhang, Q., and Yang, Y.: Large-scale evidence for microbial response and associated carbon release after permafrost thaw, Glob Change Biol., 27, 3218–3229, https://doi.org/10.1111/gcb.15487, 2021.
Clark, R. B.: Arbuscular mycorrhizal adaptation, spore germination, root colonization, and host plant growth and mineral acquisition at low pH, Plant Soil., 192, 15–22, https://doi.org/10.1023/A:1004218915413, 1997.
Clay, K.: Interactions among fungal endophytes, grasses and herbivores, Res. Popul. Ecol., 38, 191–201, https://doi.org/10.1007/BF02515727, 1996.
Ezaki, B., Nagao, E., Yamamoto, Y., Nakashima, S., and Enomoto, T.: Wild plants, Andropogon virginicus L. and Miscanthus sinensis Anders, are tolerant to multiple stresses including aluminum, heavy metals and oxidative stresses, Plant Cell Rep., 27, 951–961, https://doi.org/10.1007/s00299-007-0503-8, 2008.
Famoso, A. N., Clark, R. T., Shaff, J. E., Craft, E., McCouch, S. R., and Kochian, L. V.: Development of a Novel Aluminum Tolerance Phenotyping Platform Used for Comparisons of Cereal Aluminum Tolerance and Investigations into Rice Aluminum Tolerance Mechanisms, Plant Physiol., 153, 1678–1691, https://doi.org/10.1104/pp.110.156794, 2010.
Fujimura, R., Kim, S.-W., Sato, Y., Oshima, K., Hattori, M., Kamijo, T., and Ohta, H.: Unique pioneer microbial communities exposed to volcanic sulfur dioxide, Sci. Rep., 6, 19687, https://doi.org/10.1038/srep19687, 2016.
Ghimire, S. R., Charlton, N. D., Bell, J. D., Krishnamurthy, Y. L., and Craven, K. D.: Biodiversity of fungal endophyte communities inhabiting switchgrass (Panicum virgatum L.) growing in the native tallgrass prairie of northern Oklahoma, Fungal Divers., 47, 19–27, https://doi.org/10.1007/s13225-010-0085-6, 2011.
Gill, S. S., Gill, R., Trivedi, D. K., Anjum, N. A., Sharma, K. K., Ansari, M. W., Ansari, A. A., Johri, A. K., Prasad, R., Pereira, E., Varma, A., and Tuteja, N.: Piriformospora indica: Potential and Significance in Plant Stress Tolerance, Front. Microbiol., 7, 332, https://doi.org/10.3389/fmicb.2016.00332, 2016.
Gonzalez Mateu, M., Baldwin, A. H., Maul, J. E., and Yarwood, S. A.: Dark septate endophyte improves salt tolerance of native and invasive lineages of Phragmites australis, ISME J., 14, 1943–1954, https://doi.org/10.1038/s41396-020-0654-y, 2020.
Grünig, C. R., Queloz, V., Sieber, T. N., and Holdenrieder, O.: Dark septate endophytes (DSE) of the Phialocephala fortinii s.l. – Acephala applanata species complex in tree roots: classification, population biology, and ecology, Botany, 86, 1355–1369, https://doi.org/10.1139/B08-108, 2008.
Guo, Y., Fujimura, R., Sato, Y., Suda, W., Kim, S., Oshima, K., Hattori, M., Kamijo, T., Narisawa, K., and Ohta, H.: Characterization of Early Microbial Communities on Volcanic Deposits along a Vegetation Gradient on the Island of Miyake, Japan, Microb. Environ., 29, 38–49, https://doi.org/10.1264/jsme2.ME13142, 2014.
Haruma, T., Yamaji, K., and Masuya, H.: Phialocephala fortinii increases aluminum tolerance in Miscanthus sinensis growing in acidic mine soil, Lett. Appl. Microbiol., 73, 300–307, https://doi.org/10.1111/lam.13514, 2021.
Hirata, M., Hasegawa, N., Nogami, K., and Sonoda, T.: Evaluation of forest grazing as a management practice to utilize and control Miscanthus sinensis in a young tree plantation in southern Kyushu, Japan, Grassl. Sci., 53, 181–191, https://doi.org/10.1111/j.1744-697X.2007.00091.x, 2007.
Huusko, K., Ruotsalainen, A. L., and Markkola, A. M.: A shift from arbuscular mycorrhizal to dark septate endophytic colonization in Deschampsia flexuosa roots occurs along primary successional gradient, Mycorrhiza, 27, 129–138, https://doi.org/10.1007/s00572-016-0736-x, 2017.
Jeewani, P. H., Luo, Y., Yu, G., Fu, Y., He, X., Van Zwieten, L., Liang, C., Kumar, A., He, Y., Kuzyakov, Y., Qin, H., Guggenberger, G., and Xu, J.: Arbuscular mycorrhizal fungi and goethite promote carbon sequestration via hyphal-aggregate mineral interactions, Soil Biol. Biochem., 162, 108417, https://doi.org/10.1016/j.soilbio.2021.108417, 2021.
Jumpponen, A. and Trappe, J. M.: Dark septate endophytes: a review of facultative biotrophic root-colonizing fungi, New Phytol., 140, 295–310, https://doi.org/10.1046/j.1469-8137.1998.00265.x, 1998.
Jumpponen, A., Mattson, K. G., and Trappe, J. M.: Mycorrhizal functioning of Phialocephala fortinii with Pinus contorta on glacier forefront soil: interactions with soil nitrogen and organic matter, Mycorrhiza, 7, 261–265, https://doi.org/10.1007/s005720050190, 1998.
Khastini, R. O. and Jannah, R.: Potential Contribution of Dark-Septate Endophytic Fungus Isolated From Pulau Dua Nature Reserve, Banten on Growth Promotion of Chinese Cabbage, in: 2nd and 3rd International Conference on Food Security Innovation (ICFSI 2018–2019), Banten, Indonesia, https://doi.org/10.2991/absr.k.210304.015, 2021.
Knapp, D. G., Imrefi, I., Boldpurev, E., Csíkos, S., Akhmetova, G., Berek-Nagy, P. J., Otgonsuren, B., and Kovács, G. M.: Root-Colonizing Endophytic Fungi of the Dominant Grass Stipa krylovii From a Mongolian Steppe Grassland, Front. Microbiol., 10, 2565, https://doi.org/10.3389/fmicb.2019.02565, 2019.
Landolt, M., Stroheker, S., Queloz, V., Gall, A., and Sieber, T. N.: Does water availability influence the abundance of species of the Phialocephala fortinii s.l. – Acephala applanata complex (PAC) in roots of pubescent oak (Quercus pubescens) and Scots pine (Pinus sylvestris)?, Fungal Ecol., 44, 100904, https://doi.org/10.1016/j.funeco.2019.100904, 2020.
Laval, V., Kerdraon, L., Barret, M., Liabot, A.-L., Marais, C., Boudier, B., Balesdent, M.-H., Fischer-Le Saux, M., and Suffert, F.: Assessing the Cultivability of Bacteria and Fungi from Arable Crop Residues Using Metabarcoding Data as a Reference, Diversity, 13, 404, https://doi.org/10.3390/d13090404, 2021.
Li, A.-Z., Han, X.-B., Zhang, M.-X., Zhou, Y., Chen, M., Yao, Q., and Zhu, H.-H.: Culture-Dependent and -Independent Analyses Reveal the Diversity, Structure, and Assembly Mechanism of Benthic Bacterial Community in the Ross Sea, Antarctica, Front. Microbiol., 10, 2523, https://doi.org/10.3389/fmicb.2019.02523, 2019.
Li, X., He, X., Hou, L., Ren, Y., Wang, S., and Su, F.: Dark septate endophytes isolated from a xerophyte plant promote the growth of Ammopiptanthus mongolicus under drought condition, Sci. Rep., 8, 7896, https://doi.org/10.1038/s41598-018-26183-0, 2018.
Likar, M. and Regvar, M.: Isolates of dark septate endophytes reduce metal uptake and improve physiology of Salix caprea L., Plant Soil., 370, 593–604, https://doi.org/10.1007/s11104-013-1656-6, 2013.
Luo, J., Walsh, E., Naik, A., Zhuang, W., Zhang, K., Cai, L., and Zhang, N.: Temperate Pine Barrens and Tropical Rain Forests Are Both Rich in Undescribed Fungi, PLoS One., 9, e103753, https://doi.org/10.1371/journal.pone.0103753, 2014.
Luo, Y., Durenkamp, M., Nobili, M. D., Lin, Q., Devonshire, B. J., and Brookes, P. C.: Microbial biomass growth, following incorporation of biochars produced at 350 ∘C or 700 ∘C, in a silty-clay loam soil of high and low pH, Soil Biol. Biochem., 11, 513–523, https://doi.org/10.1016/j.soilbio.2012.10.033, 2013.
Ma, J. F., Shen, R., Zhao, Z., Wissuwa, M., Takeuchi, Y., Ebitani, T., and Yano, M.: Response of Rice to Al Stress and Identification of Quantitative Trait Loci for Al Tolerance, Plant Cell Physiol., 43, 652–659, https://doi.org/10.1093/pcp/pcf081, 2002.
Mahmoud, R. S. and Narisawa, K.: A New Fungal Endophyte, Scolecobasidium humicola, Promotes Tomato Growth under Organic Nitrogen Conditions, PLoS One, 8, e78746, https://doi.org/10.1371/journal.pone.0078746, 2013.
Menkis, A., Allmer, J., Vasiliauskas, R., Lygis, V., Stenlid, J., and Finlay, R.: Ecology and molecular characterization of dark septate fungi from roots, living stems, coarse and fine woody debris, Mycol. Res., 108, 965–973, https://doi.org/10.1017/S0953756204000668, 2004.
Omacini, M., Chaneton, E. J., Ghersa, C. M., and Müller, C. B.: Symbiotic fungal endophytes control insect host–parasite interaction webs, Nature, 409, 78–81, https://doi.org/10.1038/35051070, 2001.
Porcel, R., Aroca, R., and Ruiz-Lozano, J. M.: Salinity stress alleviation using arbuscular mycorrhizal fungi. A review, Agron. Sustain. Dev., 32, 181–200, https://doi.org/10.1007/s13593-011-0029-x, 2012.
Postma, J. W. M., Olsson, P. A., and Falkengren-Grerup, U.: Root colonisation by arbuscular mycorrhizal, fine endophytic and dark septate fungi across a pH gradient in acid beech forests, Soil Biol. Biochem., 39, 400–408, https://doi.org/10.1016/j.soilbio.2006.08.007, 2007.
Rodriguez, R. J., Henson, J., Van Volkenburgh, E., Hoy, M., Wright, L., Beckwith, F., Kim, Y.-O., and Redman, R. S.: Stress tolerance in plants via habitat-adapted symbiosis, ISME J., 2, 404–416, https://doi.org/10.1038/ismej.2007.106, 2008.
Sahu, P. K., Tilgam, J., Mishra, S., Hamid, S., Gupta, A., Verma, S. K., and Kharwar, R. N.: Surface sterilization for isolation of endophytes: Ensuring what (not) to grow, J. Basic Microbiol., 62, 647–668, https://doi.org/10.1002/jobm.202100462, 2022.
Stewart, J. R., Toma, Y., Fernández, F. G., Nishiwaki, A., Yamada, T., and Bollero, G.: The ecology and agronomy of Miscanthus sinensis , a species important to bioenergy crop development, in its native range in Japan: a review, GCB Bioenergy, 1, 126–153, https://doi.org/10.1111/j.1757-1707.2009.01010.x, 2009.
Stroheker, S., Dubach, V., Vögtli, I., and Sieber, T. N.: Investigating Host Preference of Root Endophytes of Three European Tree Species, with a Focus on Members of the Phialocephala fortinii–Acephala applanata Species Complex (PAC), JoF, 7, 317, https://doi.org/10.3390/jof7040317, 2021.
Surono and Narisawa, K.: The dark septate endophytic fungus Phialocephala fortinii is a potential decomposer of soil organic compounds and a promoter of Asparagus officinalis growth, Fungal Ecol., 28, 1–10, https://doi.org/10.1016/j.funeco.2017.04.001, 2017.
Tedersoo, L., Pärtel, K., Jairus, T., Gates, G., Põldmaa, K., and Tamm, H.: Ascomycetes associated with ectomycorrhizas: molecular diversity and ecology with particular reference to the Helotiales, Environ Microbiol., 11, 3166–3178, https://doi.org/10.1111/j.1462-2920.2009.02020.x, 2009.
Toju, H., Peay, K. G., Yamamichi, M., Narisawa, K., Hiruma, K., Naito, K., Fukuda, S., Ushio, M., Nakaoka, S., Onoda, Y., Yoshida, K., Schlaeppi, K., Bai, Y., Sugiura, R., Ichihashi, Y., Minamisawa, K., and Kiers, E. T.: Core microbiomes for sustainable agroecosystems, Nat Plants., 4, 247–257, https://doi.org/10.1038/s41477-018-0139-4, 2018.
Usuki, F. and Narisawa, K.: Formation of structures resembling ericoid mycorrhizas by the root endophytic fungus Heteroconium chaetospira within roots of Rhododendron obtusum var. kaempferi, Mycorrhiza, 15, 61–64, https://doi.org/10.1007/s00572-004-0333-2, 2005.
Usuki, F. and Narisawa, K.: A mutualistic symbiosis between a dark septate endophytic fungus, Heteroconium chaetospira, and a nonmycorrhizal plant, Chinese cabbage, Mycologia, 99, 175–184, https://doi.org/10.1080/15572536.2007.11832577, 2007.
Van Aarle, I. M., Olsson, P. A., and Söderström, B.: Arbuscular mycorrhizal fungi respond to the substrate pH of their extraradical mycelium by altered growth and root colonization, New Phytol., 155, 173–182, https://doi.org/10.1046/j.1469-8137.2002.00439.x, 2002.
Walker, J. F., Aldrich-Wolfe, L., Riffel, A., Barbare, H., Simpson, N. B., Trowbridge, J., and Jumpponen, A.: Diverse Helotiales associated with the roots of three species of Arctic Ericaceae provide no evidence for host specificity, New Phytol., 191, 515–527, https://doi.org/10.1111/j.1469-8137.2011.03703.x, 2011.
Wang, C. J. K. and Wilcox, H. E.: New Species of Ectendomycorrhizal and Pseudomycorrhizal Fungi: Phialophora finlandia, Chloridium paucisporum, and Phialocephala fortinii, Mycologia, 77, 951, https://doi.org/10.2307/3793308, 1985.
Watanabe, T., Jansen, S., and Osaki, M.: Al-Fe interactions and growth enhancement in Melastoma malabathricum and Miscanthus sinensis dominating acid sulphate soils, Plant Cell Environ., 29, 2124–2132, https://doi.org/10.1111/j.1365-3040.2006.001586.x, 2006.
Wu, Q.-S. and Xia, R.-X.: Arbuscular mycorrhizal fungi influence growth, osmotic adjustment and photosynthesis of citrus under well-watered and water stress conditions, J. Plant Physiol., 163, 417–425, https://doi.org/10.1016/j.jplph.2005.04.024, 2006.
Yadav, R. L., Shukla, S. K., Suman, A., and Singh, P. N.: Trichoderma inoculation and trash management effects on soil microbial biomass, soil respiration, nutrient uptake and yield of ratoon sugarcane under subtropical conditions, Biol. Fertil. Soils, 45, 461–468, https://doi.org/10.1007/s00374-009-0352-4, 2009.
Yamanishi, A., Kamijo, T., Tsunekawa, A., and Higuchi, H.: Monitoring vegetation damage caused by the year 2000 Miyake Island's volcanic eruption using satellite data, Journal of the Japanese Institute of Landscape Architecture, 66, 473–476, https://doi.org/10.5632/jila.66.473, 2003.
Yu, Y., Teng, Z., Mou, Z., Lv, Y., Li, T., Chen, S., Zhao, D., and Zhao, Z.: Melatonin confers heavy metal-induced tolerance by alleviating oxidative stress and reducing the heavy metal accumulation in Exophiala pisciphila, a dark septate endophyte (DSE), BMC Microbiol., 21, 40, https://doi.org/10.1186/s12866-021-02098-1, 2021.
Yuan, Z., Zhang, C., Lin, F., and Kubicek, C. P.: Identity, Diversity, and Molecular Phylogeny of the Endophytic Mycobiota in the Roots of Rare Wild Rice (Oryza granulate) from a Nature Reserve in Yunnan, China, Appl. Environ. Microb., 76, 1642–1652, https://doi.org/10.1128/AEM.01911-09, 2010.
Zheng, H., Yang, T., Bao, Y., He, P., Yang, K., Mei, X., Wei, Z., Xu, Y., Shen, Q., and Banerjee, S.: Network analysis and subsequent culturing reveal keystone taxa involved in microbial litter decomposition dynamics, Soil Biol. Biochem., 157, 108230, https://doi.org/10.1016/j.soilbio.2021.108230, 2021.
Short summary
In this research, we assessed the diversity and function of the dark septate endophytic (DSE) fungi community associated with Miscanthus condensatus root in volcanic ecosystems. Both metabarcoding and isolation were adopted in this study. We further validated effects on plant growth by inoculation of some core DSE isolates. This study helps improve our understanding of the role of Miscanthus condensatus-associated DSE fungi during the restoration of post-volcanic ecosystems.
In this research, we assessed the diversity and function of the dark septate endophytic (DSE)...
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