Articles | Volume 11, issue 2
https://doi.org/10.5194/bg-11-217-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-217-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
21 Jan 2014
Research article |
| 21 Jan 2014
Evaluating terrestrial CO2 flux diagnoses and uncertainties from a simple land surface model and its residuals
T. W. Hilton
now at: School of Engineering, University of California, Merced, Merced, CA, USA
Department of Meteorology, Pennsylvania State University, University Park, PA, USA
K. J. Davis
Department of Meteorology, Pennsylvania State University, University Park, PA, USA
K. Keller
Department of Geosciences, Pennsylvania State University, University Park, PA,, USA
Related authors
Mary E. Whelan, Sinikka T. Lennartz, Teresa E. Gimeno, Richard Wehr, Georg Wohlfahrt, Yuting Wang, Linda M. J. Kooijmans, Timothy W. Hilton, Sauveur Belviso, Philippe Peylin, Róisín Commane, Wu Sun, Huilin Chen, Le Kuai, Ivan Mammarella, Kadmiel Maseyk, Max Berkelhammer, King-Fai Li, Dan Yakir, Andrew Zumkehr, Yoko Katayama, Jérôme Ogée, Felix M. Spielmann, Florian Kitz, Bharat Rastogi, Jürgen Kesselmeier, Julia Marshall, Kukka-Maaria Erkkilä, Lisa Wingate, Laura K. Meredith, Wei He, Rüdiger Bunk, Thomas Launois, Timo Vesala, Johan A. Schmidt, Cédric G. Fichot, Ulli Seibt, Scott Saleska, Eric S. Saltzman, Stephen A. Montzka, Joseph A. Berry, and J. Elliott Campbell
Biogeosciences, 15, 3625–3657, https://doi.org/10.5194/bg-15-3625-2018, https://doi.org/10.5194/bg-15-3625-2018, 2018
Short summary
Short summary
Measurements of the trace gas carbonyl sulfide (OCS) are helpful in quantifying photosynthesis at previously unknowable temporal and spatial scales. While CO2 is both consumed and produced within ecosystems, OCS is mostly produced in the oceans or from specific industries, and destroyed in plant leaves in proportion to CO2. This review summarizes the advancements we have made in the understanding of OCS exchange and applications to vital ecosystem water and carbon cycle questions.
Mary E. Whelan, Timothy W. Hilton, Joseph A. Berry, Max Berkelhammer, Ankur R. Desai, and J. Elliott Campbell
Atmos. Chem. Phys., 16, 3711–3726, https://doi.org/10.5194/acp-16-3711-2016, https://doi.org/10.5194/acp-16-3711-2016, 2016
Short summary
Short summary
We constructed a model of carbonyl sulfide soil exchange sufficient for predicting outcomes in terrestrial ecosystems. Empirical observations combined with soil gas exchange theory reveal simultaneous abiotic production and biotic uptake mechanisms. Measurement of atmospheric carbonyl sulfide is an emerging tool to quantify photosynthesis at important temporal and spatial scales.
Daniel J. Varon, Daniel J. Jacob, Benjamin Hmiel, Ritesh Gautam, David R. Lyon, Mark Omara, Melissa Sulprizio, Lu Shen, Drew Pendergrass, Hannah Nesser, Zhen Qu, Zachary R. Barkley, Natasha L. Miles, Scott J. Richardson, Kenneth J. Davis, Sudhanshu Pandey, Xiao Lu, Alba Lorente, Tobias Borsdorff, Joannes D. Maasakkers, and Ilse Aben
Atmos. Chem. Phys., 23, 7503–7520, https://doi.org/10.5194/acp-23-7503-2023, https://doi.org/10.5194/acp-23-7503-2023, 2023
Short summary
Short summary
We use TROPOMI satellite observations to quantify weekly methane emissions from the US Permian oil and gas basin from May 2018 to October 2020. We find that Permian emissions are highly variable, with diverse economic and activity drivers. The most important drivers during our study period were new well development and natural gas price. Permian methane intensity averaged 4.6 % and decreased by 1 % per year.
Zachary Barkley, Kenneth Davis, Natasha Miles, Scott Richardson, Aijun Deng, Benjamin Hmiel, David Lyon, and Thomas Lauvaux
Atmos. Chem. Phys., 23, 6127–6144, https://doi.org/10.5194/acp-23-6127-2023, https://doi.org/10.5194/acp-23-6127-2023, 2023
Short summary
Short summary
Using methane monitoring instruments attached to towers, we measure methane concentrations and quantify methane emissions coming from the Marcellus and Permian oil and gas basins. In the Marcellus, emissions were 3 times higher than the state inventory across the entire monitoring period. In the Permian, we see a sharp decline in emissions aligning with the onset of the COVID-19 pandemic. Tower observational networks can be utilized in other basins for long-term monitoring of emissions.
Rory A. Barton-Grimley, Amin R. Nehrir, Susan A. Kooi, James E. Collins, David B. Harper, Anthony Notari, Joseph Lee, Joshua P. DiGangi, Yonghoon Choi, and Kenneth J. Davis
Atmos. Meas. Tech., 15, 4623–4650, https://doi.org/10.5194/amt-15-4623-2022, https://doi.org/10.5194/amt-15-4623-2022, 2022
Short summary
Short summary
HALO is a multi-functional lidar that measures CH4 columns and profiles of H2O mixing ratio and aerosol/cloud optical properties. HALO supports carbon cycle, weather dynamics, and radiation science suborbital research and is a technology testbed for future space-based differential absorption lidar missions. In 2019 HALO collected CH4 columns and aerosol/cloud profiles during the ACT-America campaign. Here we assess HALO's CH4 accuracy and precision compared to co-located in situ observations.
Vanessa C. Monteiro, Natasha L. Miles, Scott J. Richardson, Zachary Barkley, Bernd J. Haupt, David Lyon, Benjamin Hmiel, and Kenneth J. Davis
Earth Syst. Sci. Data, 14, 2401–2417, https://doi.org/10.5194/essd-14-2401-2022, https://doi.org/10.5194/essd-14-2401-2022, 2022
Short summary
Short summary
We describe a network of five ground-based in situ towers, equipped to measure concentrations of methane, carbon dioxide, hydrogen sulfide, and the isotopic ratio of methane, in the Permian Basin, United States. The main goal is to use methane concentrations with atmospheric models to determine methane emissions from one of the Permian sub-basins. These datasets can improve emissions estimations, leading to best practices in the oil and natural gas industry, and policies for emissions reduction.
David F. Baker, Emily Bell, Kenneth J. Davis, Joel F. Campbell, Bing Lin, and Jeremy Dobler
Geosci. Model Dev., 15, 649–668, https://doi.org/10.5194/gmd-15-649-2022, https://doi.org/10.5194/gmd-15-649-2022, 2022
Short summary
Short summary
The OCO-2 satellite measures many closely spaced column-averaged CO2 values around its orbit. To give these data proper weight in flux inversions, their error correlations must be accounted for. Here we lay out a 1-D error model with correlations that die out exponentially along-track to do so. A correlation length scale of ∼20 km is derived from column CO2 measurements from an airborne lidar flown underneath OCO-2 for use in this model. The model's performance is compared to previous ones.
Tao Zheng, Sha Feng, Kenneth J. Davis, Sandip Pal, and Josep-Anton Morguí
Geosci. Model Dev., 14, 3037–3066, https://doi.org/10.5194/gmd-14-3037-2021, https://doi.org/10.5194/gmd-14-3037-2021, 2021
Short summary
Short summary
Carbon dioxide is the most important greenhouse gas. We develop the numerical model that represents carbon dioxide transport in the atmosphere. This model development is based on the MPAS model, which has a variable-resolution capability. The purpose of developing carbon dioxide transport in MPAS is to allow for high-resolution transport model simulation that is not limited by the lateral boundaries. It will also form the base for a future development of MPAS-based carbon inversion system.
David R. Lyon, Benjamin Hmiel, Ritesh Gautam, Mark Omara, Katherine A. Roberts, Zachary R. Barkley, Kenneth J. Davis, Natasha L. Miles, Vanessa C. Monteiro, Scott J. Richardson, Stephen Conley, Mackenzie L. Smith, Daniel J. Jacob, Lu Shen, Daniel J. Varon, Aijun Deng, Xander Rudelis, Nikhil Sharma, Kyle T. Story, Adam R. Brandt, Mary Kang, Eric A. Kort, Anthony J. Marchese, and Steven P. Hamburg
Atmos. Chem. Phys., 21, 6605–6626, https://doi.org/10.5194/acp-21-6605-2021, https://doi.org/10.5194/acp-21-6605-2021, 2021
Short summary
Short summary
The Permian Basin (USA) is the world’s largest oil field. We use tower- and aircraft-based approaches to measure how methane emissions in the Permian Basin changed throughout 2020. In early 2020, 3.3 % of the region’s gas was emitted; then in spring 2020, the loss rate temporarily dropped to 1.9 % as oil price crashed. We find this short-term reduction to be a result of reduced well development, less gas flaring, and fewer abnormal events despite minimal reductions in oil and gas production.
Xueying Yu, Dylan B. Millet, Kelley C. Wells, Daven K. Henze, Hansen Cao, Timothy J. Griffis, Eric A. Kort, Genevieve Plant, Malte J. Deventer, Randall K. Kolka, D. Tyler Roman, Kenneth J. Davis, Ankur R. Desai, Bianca C. Baier, Kathryn McKain, Alan C. Czarnetzki, and A. Anthony Bloom
Atmos. Chem. Phys., 21, 951–971, https://doi.org/10.5194/acp-21-951-2021, https://doi.org/10.5194/acp-21-951-2021, 2021
Short summary
Short summary
Methane concentrations have doubled since 1750. The US Upper Midwest is a key region contributing to such trends, but sources are poorly understood. We collected and analyzed aircraft data to resolve spatial and timing biases in wetland and livestock emission estimates and uncover errors in inventory treatment of manure management. We highlight the importance of intensive agriculture for the regional and US methane budgets and the potential for methane mitigation through improved management.
Petter Weibring, Dirk Richter, James G. Walega, Alan Fried, Joshua DiGangi, Hannah Halliday, Yonghoon Choi, Bianca Baier, Colm Sweeney, Ben Miller, Kenneth J. Davis, Zachary Barkley, and Michael D. Obland
Atmos. Meas. Tech., 13, 6095–6112, https://doi.org/10.5194/amt-13-6095-2020, https://doi.org/10.5194/amt-13-6095-2020, 2020
Short summary
Short summary
The present study describes an autonomously operated instrument for high-precision (20–40 parts per trillion in 1 s) measurements of ethane during actual airborne operations on a small aircraft platform (NASA's King Air B200). This paper discusses the dynamic nature of airborne performance due to various aircraft-induced perturbations, methods devised to identify such events, and solutions we have enacted to circumvent these perturbations.
Nikolay V. Balashov, Kenneth J. Davis, Natasha L. Miles, Thomas Lauvaux, Scott J. Richardson, Zachary R. Barkley, and Timothy A. Bonin
Atmos. Chem. Phys., 20, 4545–4559, https://doi.org/10.5194/acp-20-4545-2020, https://doi.org/10.5194/acp-20-4545-2020, 2020
Short summary
Short summary
An accurate independent verification methodology to estimate methane (a powerful greenhouse gas) emissions is essential for the effective implementation of policies that aim to reduce the impacts of climate change. In this paper, four uncertainties that complicate the independent estimation of urban methane emissions are identified: the definition of urban domain, background heterogeneity, emissions temporal variability, and missing sources. Ways to improve emission estimates are suggested.
Liza I. Díaz-Isaac, Thomas Lauvaux, Marc Bocquet, and Kenneth J. Davis
Atmos. Chem. Phys., 19, 5695–5718, https://doi.org/10.5194/acp-19-5695-2019, https://doi.org/10.5194/acp-19-5695-2019, 2019
Short summary
Short summary
We demonstrate that transport model errors, one of the main contributors to the uncertainty in regional CO2 inversions, can be represented by a small-size ensemble carefully calibrated with meteorological data. Our results also confirm transport model errors represent a significant fraction of the model–data mismatch in CO2 mole fractions and hence in regional inverse CO2 fluxes.
Julian Kostinek, Anke Roiger, Kenneth J. Davis, Colm Sweeney, Joshua P. DiGangi, Yonghoon Choi, Bianca Baier, Frank Hase, Jochen Groß, Maximilian Eckl, Theresa Klausner, and André Butz
Atmos. Meas. Tech., 12, 1767–1783, https://doi.org/10.5194/amt-12-1767-2019, https://doi.org/10.5194/amt-12-1767-2019, 2019
Short summary
Short summary
We demonstrate the successful adaption of a laser-based spectrometer for airborne in situ trace gas measurements. The modified instrument allows for precise and simultaneous airborne observation of five climatologically relevant gases. We further report on instrument performance during a first field deployment over the eastern and central USA.
Martha P. Butler, Thomas Lauvaux, Sha Feng, Junjie Liu, Kevin W. Bowman, and Kenneth J. Davis
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2018-342, https://doi.org/10.5194/gmd-2018-342, 2019
Revised manuscript not accepted
Short summary
Short summary
This paper describes a mass-conserving framework for computing time-varying lateral boundary conditions from global model carbon dioxide concentrations for introduction into the WRF-Chem regional model. The goal is to create a laboratory environment in which carbon dioxide transport uncertainties may be explored separately from inversion-derived flux uncertainties. The software is currently available on GitHub at https://github.com/psu-inversion/WRF_Boundary_Coupling.
Liza I. Díaz-Isaac, Thomas Lauvaux, and Kenneth J. Davis
Atmos. Chem. Phys., 18, 14813–14835, https://doi.org/10.5194/acp-18-14813-2018, https://doi.org/10.5194/acp-18-14813-2018, 2018
Short summary
Short summary
Atmospheric inversions rely on the accurate representation of the atmospheric dynamics in order to produce reliable surface fluxes. In this work, we evaluate the sensitivity of a state-of-the-art mesoscale atmospheric model to the different physics parameterizations and forcing. We conclude that no model configuration is optimal across an entire region. Therefore, we recommend an ensemble approach or the assimilation of meteorological observations in future inversion studies.
Mary E. Whelan, Sinikka T. Lennartz, Teresa E. Gimeno, Richard Wehr, Georg Wohlfahrt, Yuting Wang, Linda M. J. Kooijmans, Timothy W. Hilton, Sauveur Belviso, Philippe Peylin, Róisín Commane, Wu Sun, Huilin Chen, Le Kuai, Ivan Mammarella, Kadmiel Maseyk, Max Berkelhammer, King-Fai Li, Dan Yakir, Andrew Zumkehr, Yoko Katayama, Jérôme Ogée, Felix M. Spielmann, Florian Kitz, Bharat Rastogi, Jürgen Kesselmeier, Julia Marshall, Kukka-Maaria Erkkilä, Lisa Wingate, Laura K. Meredith, Wei He, Rüdiger Bunk, Thomas Launois, Timo Vesala, Johan A. Schmidt, Cédric G. Fichot, Ulli Seibt, Scott Saleska, Eric S. Saltzman, Stephen A. Montzka, Joseph A. Berry, and J. Elliott Campbell
Biogeosciences, 15, 3625–3657, https://doi.org/10.5194/bg-15-3625-2018, https://doi.org/10.5194/bg-15-3625-2018, 2018
Short summary
Short summary
Measurements of the trace gas carbonyl sulfide (OCS) are helpful in quantifying photosynthesis at previously unknowable temporal and spatial scales. While CO2 is both consumed and produced within ecosystems, OCS is mostly produced in the oceans or from specific industries, and destroyed in plant leaves in proportion to CO2. This review summarizes the advancements we have made in the understanding of OCS exchange and applications to vital ecosystem water and carbon cycle questions.
Natasha L. Miles, Douglas K. Martins, Scott J. Richardson, Christopher W. Rella, Caleb Arata, Thomas Lauvaux, Kenneth J. Davis, Zachary R. Barkley, Kathryn McKain, and Colm Sweeney
Atmos. Meas. Tech., 11, 1273–1295, https://doi.org/10.5194/amt-11-1273-2018, https://doi.org/10.5194/amt-11-1273-2018, 2018
Short summary
Short summary
Analyzers measuring methane and methane isotopic ratio were deployed at four towers in the Marcellus Shale natural gas extraction region of Pennsylvania. The methane isotopic ratio is helpful for differentiating emissions from natural gas activities from other sources (e.g., landfills). We describe the analyzer calibration. The signals observed in the study region were generally small, but the instrumental performance demonstrated here could be used in regions with stronger enhancements.
Zachary R. Barkley, Thomas Lauvaux, Kenneth J. Davis, Aijun Deng, Natasha L. Miles, Scott J. Richardson, Yanni Cao, Colm Sweeney, Anna Karion, MacKenzie Smith, Eric A. Kort, Stefan Schwietzke, Thomas Murphy, Guido Cervone, Douglas Martins, and Joannes D. Maasakkers
Atmos. Chem. Phys., 17, 13941–13966, https://doi.org/10.5194/acp-17-13941-2017, https://doi.org/10.5194/acp-17-13941-2017, 2017
Short summary
Short summary
This study quantifies methane emissions from natural gas production in north-eastern Pennsylvania. Methane observations from 10 flights in spring 2015 are compared to model-projected values, and methane emissions from natural gas are adjusted within the model to create the best match between the two data sets. This study find methane emissions from natural gas production to be low and may be indicative of characteristics of the basin that make sources from north-eastern Pennsylvania unique.
Mary E. Whelan, Timothy W. Hilton, Joseph A. Berry, Max Berkelhammer, Ankur R. Desai, and J. Elliott Campbell
Atmos. Chem. Phys., 16, 3711–3726, https://doi.org/10.5194/acp-16-3711-2016, https://doi.org/10.5194/acp-16-3711-2016, 2016
Short summary
Short summary
We constructed a model of carbonyl sulfide soil exchange sufficient for predicting outcomes in terrestrial ecosystems. Empirical observations combined with soil gas exchange theory reveal simultaneous abiotic production and biotic uptake mechanisms. Measurement of atmospheric carbonyl sulfide is an emerging tool to quantify photosynthesis at important temporal and spatial scales.
Susan L. Brantley, Roman A. DiBiase, Tess A. Russo, Yuning Shi, Henry Lin, Kenneth J. Davis, Margot Kaye, Lillian Hill, Jason Kaye, David M. Eissenstat, Beth Hoagland, Ashlee L. Dere, Andrew L. Neal, Kristen M. Brubaker, and Dan K. Arthur
Earth Surf. Dynam., 4, 211–235, https://doi.org/10.5194/esurf-4-211-2016, https://doi.org/10.5194/esurf-4-211-2016, 2016
Short summary
Short summary
In order to better understand and forecast the evolution of the environment from the top of the vegetation canopy down to bedrock, numerous types of intensive measurements have been made over several years in a small watershed. The ability to expand such a study to larger areas and different environments requiring fewer measurements is essential. This study presents one possible approach to such an expansion, to collect necessary and sufficient measurements in order to forecast this evolution.
L. Haszpra, Z. Barcza, T. Haszpra, Zs. Pátkai, and K. J. Davis
Atmos. Meas. Tech., 8, 1657–1671, https://doi.org/10.5194/amt-8-1657-2015, https://doi.org/10.5194/amt-8-1657-2015, 2015
A. W. King, R. J. Andres, K. J. Davis, M. Hafer, D. J. Hayes, D. N. Huntzinger, B. de Jong, W. A. Kurz, A. D. McGuire, R. Vargas, Y. Wei, T. O. West, and C. W. Woodall
Biogeosciences, 12, 399–414, https://doi.org/10.5194/bg-12-399-2015, https://doi.org/10.5194/bg-12-399-2015, 2015
W. Chang, P. J. Applegate, M. Haran, and K. Keller
Geosci. Model Dev., 7, 1933–1943, https://doi.org/10.5194/gmd-7-1933-2014, https://doi.org/10.5194/gmd-7-1933-2014, 2014
M. O. L. Cambaliza, P. B. Shepson, D. R. Caulton, B. Stirm, D. Samarov, K. R. Gurney, J. Turnbull, K. J. Davis, A. Possolo, A. Karion, C. Sweeney, B. Moser, A. Hendricks, T. Lauvaux, K. Mays, J. Whetstone, J. Huang, I. Razlivanov, N. L. Miles, and S. J. Richardson
Atmos. Chem. Phys., 14, 9029–9050, https://doi.org/10.5194/acp-14-9029-2014, https://doi.org/10.5194/acp-14-9029-2014, 2014
Related subject area
Biogeochemistry: Air - Land Exchange
Rethinking the deployment of static chambers for CO2 flux measurement in dry desert soils
Lichen species across Alaska produce highly active and stable ice nucleators
A differentiable, physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Snow–vegetation–atmosphere interactions in alpine tundra
BVOC emission flux response to the El Niño-Southern Oscillation
Synergy between TROPOMI sun-induced chlorophyll fluorescence and MODIS spectral reflectance for understanding the dynamics of gross primary productivity at Integrated Carbon Observatory System (ICOS) ecosystem flux sites
Atmospheric deposition of reactive nitrogen to a deciduous forest in the southern Appalachian Mountains
Sap flow and leaf gas exchange response to drought and heatwave in urban green spaces in a Nordic city
Tropical cyclones facilitate recovery of forest leaf area from dry spells in East Asia
Minor contributions of daytime monoterpenes are major contributors to atmospheric reactivity
Using atmospheric observations to quantify annual biogenic carbon dioxide fluxes on the Alaska North Slope
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part II: Modeling annual budgets
Growth and actual leaf temperature modulate CO2 responsiveness of monoterpene emissions from holm oak in opposite ways
Multi-year observations reveal a larger than expected autumn respiration signal across northeast Eurasia
Reviews and syntheses: VOC emissions from soil cover in boreal and temperate natural ecosystems of the Northern Hemisphere
Internal tree cycling and atmospheric archiving of mercury: examination with concentration and stable isotope analyses
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
CO2 and CH4 exchanges between moist moss tundra and atmosphere on Kapp Linné, Svalbard
Recent extreme drought events in the Amazon rainforest: assessment of different precipitation and evapotranspiration datasets and drought indicators
Variability and uncertainty in flux-site-scale net ecosystem exchange simulations based on machine learning and remote sensing: a systematic evaluation
Update of a biogeochemical model with process-based algorithms to predict ammonia volatilization from fertilized cultivated uplands and rice paddy fields
Massive warming-induced carbon loss from subalpine grassland soils in an altitudinal transplantation experiment
Climatic variation drives loss and restructuring of carbon and nitrogen in boreal forest wildfire
Gaps in network infrastructure limit our understanding of biogenic methane emissions for the United States
Changes of the aerodynamic characteristics of a flux site after an extensive windthrow
Carbon sequestration potential of street tree plantings in Helsinki
Technical note: Incorporating expert domain knowledge into causal structure discovery workflows
Sensitivity of biomass burning emissions estimates to land surface information
A convolutional neural network for spatial downscaling of satellite-based solar-induced chlorophyll fluorescence (SIFnet)
Influence of plant ecophysiology on ozone dry deposition: comparing between multiplicative and photosynthesis-based dry deposition schemes and their responses to rising CO2 level
Modeling the interinfluence of fertilizer-induced NH3 emission, nitrogen deposition, and aerosol radiative effects using modified CESM2
Physiological and climate controls on foliar mercury uptake by European tree species
Radiation, soil water content, and temperature effects on carbon cycling in an alpine swamp meadow of the northeastern Qinghai–Tibetan Plateau
Representativeness assessment of the pan-Arctic eddy covariance site network and optimized future enhancements
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part I: Measuring temporal dynamics
Ideas and perspectives: Emerging contours of a dynamic exogenous kerogen cycle
Versatile soil gas concentration and isotope monitoring: optimization and integration of novel soil gas probes with online trace gas detection
On the impact of canopy model complexity on simulated carbon, water, and solar-induced chlorophyll fluorescence fluxes
Mercury accumulation in leaves of different plant types – the significance of tissue age and specific leaf area
Isolation of subpollen particles (SPPs) of birch: SPPs are potential carriers of ice nucleating macromolecules
Choosing an optimal β factor for relaxed eddy accumulation applications across vegetated and non-vegetated surfaces
Bioaerosols in the Amazon rain forest: temporal variations and vertical profiles of Eukarya, Bacteria, and Archaea
Ice nucleation by viruses and their potential for cloud glaciation
Carbon dioxide fluxes and carbon balance of an agricultural grassland in southern Finland
Sun-induced fluorescence and near-infrared reflectance of vegetation track the seasonal dynamics of gross primary production over Africa
Measurement and modelling of the dynamics of NH3 surface–atmosphere exchange over the Amazonian rainforest
Isoprene and monoterpene emissions from alder, aspen and spruce short-rotation forest plantations in the United Kingdom
Winter atmospheric nutrient and pollutant deposition on Western Sayan Mountain lakes (Siberia)
Methane efflux from an American bison herd
Technical note: Inexpensive modification of Exetainers for the reliable storage of trace-level hydrogen and carbon monoxide gas samples
Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
Short summary
Short summary
The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
Short summary
Short summary
Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
Short summary
Short summary
Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
Short summary
Short summary
We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Ryan Vella, Andrea Pozzer, Matthew Forrest, Jos Lelieveld, Thomas Hickler, and Holger Tost
EGUsphere, https://doi.org/10.5194/egusphere-2023-777, https://doi.org/10.5194/egusphere-2023-777, 2023
Short summary
Short summary
We investigated the effect of the El Niño-Southern Oscillation (ENSO) on biogenic volatile organic compound (BVOC) emissions from plants. ENSO events can cause a significant increase in these emissions, which have a long-term impact on the Earth's atmosphere. Persistent ENSO conditions can cause long-term changes in vegetation, resulting in even higher BVOC emissions. We link ENSO-induced emission anomalies with driving atmospheric and vegetational variables.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
Short summary
Short summary
This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
Short summary
Short summary
Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Joyson Ahongshangbam, Liisa Kulmala, Jesse Soininen, Yasmin Frühauf, Esko Karvinen, Yann Salmon, Anna Lintunen, Anni Karvonen, and Leena Järvi
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-5, https://doi.org/10.5194/bg-2023-5, 2023
Revised manuscript accepted for BG
Short summary
Short summary
Urban vegetation are important for removing urban CO2 emissions and cooling. We studied the response of urban trees functioning (photosynthesis and transpiration) due to heatwave and drought at the four urban green areas in the city of Helsinki. Our results found tree water use was increased during the heatwave and drought periods but no change in the photosynthesis rates. The heat and drought conditions were severe at the local scale but were not excessive to restrict the urban trees function.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
Short summary
Short summary
Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
Short summary
Short summary
Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
Short summary
Short summary
As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
Short summary
Short summary
For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
Short summary
Short summary
We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
Short summary
Short summary
Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
Short summary
Short summary
Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
Short summary
Short summary
Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
Short summary
Short summary
Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
Short summary
Short summary
We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
Short summary
Short summary
The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
Short summary
Short summary
A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
Short summary
Short summary
The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
Short summary
Short summary
Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
Short summary
Short summary
This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
Short summary
Short summary
To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
Short summary
Short summary
This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
Short summary
Short summary
The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
Short summary
Short summary
Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
Short summary
Short summary
This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
Short summary
Short summary
We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
Short summary
Short summary
We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
Short summary
Short summary
Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
Short summary
Short summary
Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Junqi Wei, Xiaoyan Li, Lei Liu, Torben Røjle Christensen, Zhiyun Jiang, Yujun Ma, Xiuchen Wu, Hongyun Yao, and Efrén López-Blanco
Biogeosciences, 19, 861–875, https://doi.org/10.5194/bg-19-861-2022, https://doi.org/10.5194/bg-19-861-2022, 2022
Short summary
Short summary
Although water availability has been linked to the response of ecosystem carbon (C) sink–source to climate warming, the mechanisms by which C uptake responds to soil moisture remain unclear. We explored how soil water and other environmental drivers modulate net C uptake in an alpine swamp meadow. Results reveal that nearly saturated soil conditions during warm seasons can help to maintain lower ecosystem respiration and therefore enhance the C sequestration capacity in this alpine swamp meadow.
Martijn M. T. A. Pallandt, Jitendra Kumar, Marguerite Mauritz, Edward A. G. Schuur, Anna-Maria Virkkala, Gerardo Celis, Forrest M. Hoffman, and Mathias Göckede
Biogeosciences, 19, 559–583, https://doi.org/10.5194/bg-19-559-2022, https://doi.org/10.5194/bg-19-559-2022, 2022
Short summary
Short summary
Thawing of Arctic permafrost soils could trigger the release of vast amounts of carbon to the atmosphere, thus enhancing climate change. Our study investigated how well the current network of eddy covariance sites to monitor greenhouse gas exchange at local scales captures pan-Arctic flux patterns. We identified large coverage gaps, e.g., in Siberia, but also demonstrated that a targeted addition of relatively few sites can significantly improve network performance.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, and Christian Brümmer
Biogeosciences, 19, 389–413, https://doi.org/10.5194/bg-19-389-2022, https://doi.org/10.5194/bg-19-389-2022, 2022
Short summary
Short summary
Fluxes of total reactive nitrogen (∑Nr) over a low polluted forest were analyzed with regard to their temporal dynamics. Mostly deposition was observed with median fluxes ranging from −15 to −5 ng N m−2 s−1, corresponding to a range of deposition velocities from 0.2 to 0.5 cm s−1. While seasonally changing contributions of NH3 and NOx to the ∑Nr signal were found, we estimate an annual total N deposition (dry+wet) of 12.2 and 10.9 kg N ha−1 a−1 in the 2 years of observation.
Thomas M. Blattmann
Biogeosciences, 19, 359–373, https://doi.org/10.5194/bg-19-359-2022, https://doi.org/10.5194/bg-19-359-2022, 2022
Short summary
Short summary
This work enunciates the possibility of kerogen oxidation contributing to atmospheric CO2 increase in the wake of glacial episodes. This hypothesis is substantiated by several lines of independent evidence synthesized in this contribution. The author hypothesizes that the deglaciation of kerogen-rich lithologies in western Canada contributed to the characteristic deglacial increase in atmospheric CO2.
Juliana Gil-Loaiza, Joseph R. Roscioli, Joanne H. Shorter, Till H. M. Volkmann, Wei-Ren Ng, Jordan E. Krechmer, and Laura K. Meredith
Biogeosciences, 19, 165–185, https://doi.org/10.5194/bg-19-165-2022, https://doi.org/10.5194/bg-19-165-2022, 2022
Short summary
Short summary
We evaluated a new diffusive soil probe integrated with high-resolution gas analyzers to measure soil gases in real time at a centimeter scale. Using columns with simple silica and soil, we captured changes in carbon dioxide (CO2), volatile organic compounds (VOCs), and nitrous oxide (N2O) with its isotopes to distinguish potential nutrient sources and microbial metabolism. This approach will advance the use of soil gases as important signals to understand and monitor soil fertility and health.
Yujie Wang and Christian Frankenberg
Biogeosciences, 19, 29–45, https://doi.org/10.5194/bg-19-29-2022, https://doi.org/10.5194/bg-19-29-2022, 2022
Short summary
Short summary
Modeling vegetation canopy is important in predicting whether the land remains a carbon sink to mitigate climate change in the near future. Vegetation canopy model complexity, however, impacts the model-predicted carbon and water fluxes as well as canopy fluorescence, even if the same suite of model inputs is used. Given the biases caused by canopy model complexity, we recommend not misusing parameters inverted using different models or assumptions.
Håkan Pleijel, Jenny Klingberg, Michelle Nerentorp, Malin C. Broberg, Brigitte Nyirambangutse, John Munthe, and Göran Wallin
Biogeosciences, 18, 6313–6328, https://doi.org/10.5194/bg-18-6313-2021, https://doi.org/10.5194/bg-18-6313-2021, 2021
Short summary
Short summary
Mercury is a problematic metal in the environment. It is crucial to understand the Hg circulation in ecosystems. We explored the mercury concentration in foliage from a diverse set of plants, locations and sampling periods to study the accumulation of Hg in leaves–needles over time. Mercury was always higher in older tissue: in broadleaved trees, conifers and wheat. Specific leaf area, the leaf area per unit leaf mass, turned out to be critical for Hg accumulation in leaves–needles.
Julia Burkart, Jürgen Gratzl, Teresa M. Seifried, Paul Bieber, and Hinrich Grothe
Biogeosciences, 18, 5751–5765, https://doi.org/10.5194/bg-18-5751-2021, https://doi.org/10.5194/bg-18-5751-2021, 2021
Short summary
Short summary
Extracts of birch pollen grains are known to be ice nucleation active and thus impact cloud formation and climate. In this study we develop an extraction method to separate subpollen particles from ice nucleating macromolecules. Our results thereby illustrate that ice nucleating macromolecules can be washed off the subpollen particles and that the ice activity is linked to the presence of proteins.
Teresa Vogl, Amy Hrdina, and Christoph K. Thomas
Biogeosciences, 18, 5097–5115, https://doi.org/10.5194/bg-18-5097-2021, https://doi.org/10.5194/bg-18-5097-2021, 2021
Short summary
Short summary
The relaxed eddy accumulation technique is a method used for measuring fluxes of chemical species in the atmosphere. It relies on a proportionality factor, β, which can be determined using different methods. Also, different techniques for sampling can be used by only drawing air into the measurement system when vertical wind velocity exceeds a certain threshold. We compare different ways to obtain β and different threshold techniques to direct flux measurements for three different sites.
Maria Prass, Meinrat O. Andreae, Alessandro C. de Araùjo, Paulo Artaxo, Florian Ditas, Wolfgang Elbert, Jan-David Förster, Marco Aurélio Franco, Isabella Hrabe de Angelis, Jürgen Kesselmeier, Thomas Klimach, Leslie Ann Kremper, Eckhard Thines, David Walter, Jens Weber, Bettina Weber, Bernhard M. Fuchs, Ulrich Pöschl, and Christopher Pöhlker
Biogeosciences, 18, 4873–4887, https://doi.org/10.5194/bg-18-4873-2021, https://doi.org/10.5194/bg-18-4873-2021, 2021
Short summary
Short summary
Bioaerosols in the atmosphere over the Amazon rain forest were analyzed by molecular biological staining and microscopy. Eukaryotic, bacterial, and archaeal aerosols were quantified in time series and altitude profiles which exhibited clear differences in number concentrations and vertical distributions. Our results provide insights into the sources and dispersion of different Amazonian bioaerosol types as a basis for a better understanding of biosphere–atmosphere interactions.
Michael P. Adams, Nina S. Atanasova, Svetlana Sofieva, Janne Ravantti, Aino Heikkinen, Zoé Brasseur, Jonathan Duplissy, Dennis H. Bamford, and Benjamin J. Murray
Biogeosciences, 18, 4431–4444, https://doi.org/10.5194/bg-18-4431-2021, https://doi.org/10.5194/bg-18-4431-2021, 2021
Short summary
Short summary
The formation of ice in clouds is critically important for the planet's climate. Hence, we need to know which aerosol types nucleate ice and how effectively they do so. Here we show that virus particles, with a range of architectures, nucleate ice when immersed in supercooled water. However, we also show that they only make a minor contribution to the ice-nucleating particle population in the terrestrial atmosphere, but we cannot rule them out as being important in the marine environment.
Laura Heimsch, Annalea Lohila, Juha-Pekka Tuovinen, Henriikka Vekuri, Jussi Heinonsalo, Olli Nevalainen, Mika Korkiakoski, Jari Liski, Tuomas Laurila, and Liisa Kulmala
Biogeosciences, 18, 3467–3483, https://doi.org/10.5194/bg-18-3467-2021, https://doi.org/10.5194/bg-18-3467-2021, 2021
Short summary
Short summary
CO2 and H2O fluxes were measured at a newly established eddy covariance site in southern Finland for 2 years from 2018 to 2020. This agricultural grassland site focuses on the conversion from intensive towards more sustainable agricultural management. The first summer experienced prolonged dry periods, and notably larger fluxes were observed in the second summer. The field acted as a net carbon sink during both study years.
Anteneh Getachew Mengistu, Gizaw Mengistu Tsidu, Gerbrand Koren, Maurits L. Kooreman, K. Folkert Boersma, Torbern Tagesson, Jonas Ardö, Yann Nouvellon, and Wouter Peters
Biogeosciences, 18, 2843–2857, https://doi.org/10.5194/bg-18-2843-2021, https://doi.org/10.5194/bg-18-2843-2021, 2021
Short summary
Short summary
In this study, we assess the usefulness of Sun-Induced Fluorescence of Terrestrial Ecosystems Retrieval (SIFTER) data from the GOME-2A instrument and near-infrared reflectance of vegetation (NIRv) from MODIS to capture the seasonality and magnitudes of gross primary production (GPP) derived from six eddy-covariance flux towers in Africa in the overlap years between 2007–2014. We also test the robustness of sun-induced fluoresence and NIRv to compare the seasonality of GPP for the major biomes.
Robbie Ramsay, Chiara F. Di Marco, Mathew R. Heal, Matthias Sörgel, Paulo Artaxo, Meinrat O. Andreae, and Eiko Nemitz
Biogeosciences, 18, 2809–2825, https://doi.org/10.5194/bg-18-2809-2021, https://doi.org/10.5194/bg-18-2809-2021, 2021
Short summary
Short summary
The exchange of the gas ammonia between the atmosphere and the surface is an important biogeochemical process, but little is known of this exchange for certain ecosystems, such as the Amazon rainforest. This study took measurements of ammonia exchange over an Amazon rainforest site and subsequently modelled the observed deposition and emission patterns. We observed emissions of ammonia from the rainforest, which can be simulated accurately by using a canopy resistance modelling approach.
Gemma Purser, Julia Drewer, Mathew R. Heal, Robert A. S. Sircus, Lara K. Dunn, and James I. L. Morison
Biogeosciences, 18, 2487–2510, https://doi.org/10.5194/bg-18-2487-2021, https://doi.org/10.5194/bg-18-2487-2021, 2021
Short summary
Short summary
Short-rotation forest plantations could help reduce greenhouse gases but can emit biogenic volatile organic compounds. Emissions were measured at a plantation trial in Scotland. Standardised emissions of isoprene from foliage were higher from hybrid aspen than from Sitka spruce and low from Italian alder. Emissions of total monoterpene were lower. The forest floor was only a small source. Model estimates suggest an SRF expansion of 0.7 Mha could increase total UK emissions between < 1 %–35 %.
Daniel Diaz-de-Quijano, Aleksander Vladimirovich Ageev, Elena Anatolevna Ivanova, and Olesia Valerevna Anishchenko
Biogeosciences, 18, 1601–1618, https://doi.org/10.5194/bg-18-1601-2021, https://doi.org/10.5194/bg-18-1601-2021, 2021
Short summary
Short summary
Winter atmospheric nitrogen (N) and phosphorus (P) depositions were measured for the first time in the Western Sayan Mountains (Siberia). The low and very low atmospheric N and P depositions could be responsible for the observed lake phytoplankton N–P colimitation. We hypothesize that slight imbalances in the nutrient deposition, as expected in the context of global change (climate, forest fires and anthropogenic nitrogen emissions), could have important effects on the ecology of these lakes.
Paul C. Stoy, Adam A. Cook, John E. Dore, Natascha Kljun, William Kleindl, E. N. Jack Brookshire, and Tobias Gerken
Biogeosciences, 18, 961–975, https://doi.org/10.5194/bg-18-961-2021, https://doi.org/10.5194/bg-18-961-2021, 2021
Short summary
Short summary
The reintroduction of American bison creates multiple environmental benefits. Ruminants like bison also emit methane – a potent greenhouse gas – to the atmosphere, which has not been measured to date in a field setting. We measured methane efflux from an American bison herd during winter using eddy covariance. Automated cameras were used to approximate their location to calculate per-animal flux. From the measurements, bison do not emit more methane than the cattle they often replace.
Philipp A. Nauer, Eleonora Chiri, Thanavit Jirapanjawat, Chris Greening, and Perran L. M. Cook
Biogeosciences, 18, 729–737, https://doi.org/10.5194/bg-18-729-2021, https://doi.org/10.5194/bg-18-729-2021, 2021
Short summary
Short summary
Hydrogen (H2) and carbon monoxide (CO) are atmospheric trace gases cycled via microbial metabolisms. We observed strong H2 and CO contamination from rubber septa used to seal common gas sample storage vials. Here we propose a simple and inexpensive modification of such vials to allow reliable storage of H2, CO and methane trace-gas samples for timescales of weeks to months, thus enabling extensive field campaigns to investigate H2 and CO biogeochemistry in remote areas.
Cited articles
Adkinson, A., Syed, K., and Flanagan, L.: Contrasting responses of growing season ecosystem CO2 exchange to variation in temperature and water table depth in two peatlands in northern Alberta, Canada, J. Geophys. Res., 116, G01004, https://doi.org/10.1029/2010JG001512, 2011.
Akaike, H.: An information criterion (AIC), Math. Sci., 14, 5–9, 1976.
Amiro, B., Orchansky, A., Barr, A., Black, T., Chambers, S., III, F. C., Goulden, M., Litvak, M., Liu, H., McCaughey, J., McMillan, A., and Randerson, J.: The effect of post-fire stand age on the boreal forest energy balance, Agr. Forest Meteorol., 140, 41–50, https://doi.org/10.1016/j.agrformet.2006.02.014, 2006.
Anthoni, P., Unsworth, M., Law, B., Irvine, J., Baldocchi, D., Tuyl, S., and Moore, D.: Seasonal differences in carbon and water vapor exchange in young and old-growth ponderosa pine ecosystems, Agr. Forest Meteorol., 111, 203–222, 2002.
Ardia, D. and Mullen, K.: DEoptim: Differential Evolution Optimization in R, R package version 2.0-1, http://CRAN.R-project.org/package=DEoptim (last access: 1 June 2012), 2009.
Baldocchi, D.: Assessing the eddy covariance technique for evaluating carbon dioxide exchange rates of ecosystems: past, present and future, Glob. Change Biol., 9, 479–492, https://doi.org/10.1046/j.1365-2486.2003.00629.x, 2003.
Beer, C., Reichstein, M., Tomelleri, E., Ciais, P., Jung, M., Carvalhais, N., Rodenbeck, C., Arain, M. A., Baldocchi, D., Bonan, G. B., Bondeau, A., Cescatti, A., Lasslop, G., Lindroth, A., Lomas, M., Luyssaert, S., Margolis, H., Oleson, K. W., Roupsard, O., Veenendaal, E., Viovy, N., Williams, C., Woodward, F. I., and Papale, D.: Terrestrial Gross Carbon Dioxide Uptake: Global Distribution and Covariation with Climate, Science, 329, 834–838, https://doi.org/10.1126/science.1184984, 2010.
Bergeron, O., Margolis, H., Black, T., Coursolle, C., Dunn, A., Barr, A., and Wofsy, S.: Comparison of carbon dioxide fluxes over three boreal black spruce forests in Canada, Glob. Change Biol., 13, 89–107, 2007.
Black, T., Chen, W., Barr, A., Arain, M., Chen, Z., Nesic, Z., Hogg, E., Neumann, H., and Yang, P.: Increased carbon sequestration by a boreal deciduous forest in years with a warm spring, Geophys. Res. Lett., 27, 1271–1274, 2000.
Bond-Lamberty, B., Wang, C., and Gower, S.: A global relationship between the heterotrophic and autotrophic components of soil respiration?, Glob. Change Biol., 10, 1756–1766, https://doi.org/10.1111/j.1365-2486.2004.00816.x, 2004.
Borken, W., Davidson, E., Savage, K., Sundquist, E., and Steudler, P.: Effect of summer throughfall exclusion, summer drought, and winter snow cover on methane fluxes in a temperate forest soil, Soil Biol. Biochem., 38, 1388–1395, 2006.
Bracho, R., Powell, T., Dore, S., Li, J., Hinkle, C., and Drake, B.: Environmental and biological controls on water and energy exchange in Florida scrub oak and pine flatwoods ecosystems, J. Geophys. Res., 113, G02004, https://doi.org/10.1029/2007JG000469, 2008.
Bracho, R. G., Starr, G., Gholz, H., Martin, T. A., Cropper, J. W. P., and Loescher, H. W.: Controls on carbon dynamics by ecosystem structure and climate for southeastern U.S. slash pine plantations, Ecol. Monogr., 82, 101–128, https://doi.org/10.1890/11-0587.1, 2012.
Brotzge, J.: A two-year comparison of the surface water and energy budgets between two OASIS sites and NCEP-NCAR reanalysis data, J. Hydrometeorol., 5, 311–326, 2004.
Calcagno, V.: glmulti: GLM model selection and multimodel inference made easy, R package version 1.0.1, http://CRAN.R-project.org/package=glmulti (last access: 14 August 2013), 2011.
Clark, K., Gholz, H., and Castro, M.: Carbon dynamics along a chronosequence of slash pine plantations in north Florida, Ecol. Appl., 14, 1154–1171, 2004.
Cook, B. D., Davis, K. J., Wang, W. Q., Desai, A., Berger, B. W., Teclaw, R. M., Martin, J. G., Bolstad, P. V., Bakwin, P. S., Yi, C. X., and Heilman, W.: Carbon exchange and venting anomalies in an upland deciduous forest in northern W}isconsin, {USA, Agr. Forest Meteorol., 126, 271–295, https://doi.org/10.1016/j.agrformet.2004.06.008, 2004.
Davis, K., Bakwin, P.S.and Yi, C., Berger, B., Zhao, C., Teclaw, R., and Isebrands, J.: The annual cycles of CO}2 and H2{O exchange over a northern mixed forest as observed from a very tall tower, Glob. Change Biology, 9, 1278–1293, 2003.
Denman, K., Brasseur, G., Chidthaisong, A., Ciais, P., Cox, P., Dickinson, R., Hauglustaine, D., Heinze, C., Holland, E., Jacob, D., Lohmann, U., Ramachandran, S., da Silva Dias, P., Wofsy, S., and Zhang, X.: Couplings Between Changes in the Climate System and Biogeochemistry, in: Climate Change 2007: The Physical Science Basis. Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change, edited by: Solomon, S., Qin, D., Manning, M., Chen, Z., Marquis, M., Averyt, K., Tignor, M., and Miller, H., Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2007.
Desai, A., Bolstad, P., Cook, B., Davis, K., and Carey, E.: Comparing net ecosystem exchange of carbon dioxide between an old-growth and mature forest in the upper M}idwest, {USA, Agr. Forest Meteorol., 128, 33–55, 2005.
Dunn, A., Barford, C., Wofsy, S., Goulden, M., and Daube, B.: A long-term record of carbon exchange in a boreal black spruce forest: means, responses to interannual variability, and decadal trends, Glob. Change Biol., 13, 577–590, https://doi.org/10.1111/j.1365-2486.2006.01221.x, 2007.
Epstein, H., Calef, M., Walker, M., Stuart Chapin III, F., and Starfield, A.: Detecting changes in arctic tundra plant communities in response to warming over decadal time scales, Glob. Change Biol., 10, 1325–1334, 2004.
Fischer, M., Billesbach, D., Berry, J., Riley, W., and Torn, M.: Spatiotemporal variations in growing season exchanges of CO2, H2O, and sensible heat in agricultural fields of the Southern Great Plains, Earth Interact., 11, 1–21, 2007.
Flanagan, L. B. and Adkinson, A. C.: Interacting controls on productivity in a northern Great Plains grassland and implications for response to ENSO events, Glob. Change Biol., 17, 3293–3311, https://doi.org/10.1111/j.1365-2486.2011.02461.x, 2011.
Flanagan, L. B. and Syed, K. H.: Stimulation of both photosynthesis and respiration in response to warmer and drier conditions in a boreal peatland ecosystem, Glob. Change Biol., 17, 2271–2287, https://doi.org/10.1111/j.1365-2486.2010.02378.x, 2011.
Friedl, M., McIver, D. K., Hodges, J. C. F., Zhang, X. Y., Muchoney, D., Strahler, A. H., Woodcock, C. E., Gopal, S., Schneider, A., Cooper, A., Baccini, A., Gao, F., and Schaaf, C.: Global land cover mapping from MODIS: algorithms and early results, Remote Sens. Environ., 83, 287–302, 2002.
Giasson, M., Coursolle, C., and Margolis, H.: Ecosystem-level CO2 fluxes from a boreal cutover in eastern Canada before and after scarification, Agr. Forest Meteorol., 140, 23–40, 2006.
Goldstein, A., Hultman, N., Fracheboud, J., Bauer, M., Panek, J., Xu, M., Qi, Y., Guenther, A., and Baugh, W.: Effects of climate variability on the carbon dioxide, water, and sensible heat fluxes above a ponderosa pine plantation in the Sierra Nevada (CA), Agr. Forest Meteorol., 101, 113–129, 2000.
Gough, C., Vogel, C., Schmid, H., Su, H., and Curtis, P.: Multi-year convergence of biometric and meteorological estimates of forest carbon storage, Agr. Forest Meteorol., 148, 158–170, 2008.
Goulden, M., Munger, W., Fan, S., Daube, B., and Wofsy, S.: Measurements of carbon sequestration by long-term eddy covariance: methods and a critical evaluation of accuracy, Glob. Change Biol., 2, 169–182, 1996.
Goulden, M., Winston, G., McMillan, A., Litvak, M., Read, E., Rocha, A., and Rob Elliot, J.: An eddy covariance mesonet to measure the effect of forest age on land-atmosphere exchange, Glob. Change Biol., 12, 2146–2162, 2006.
Gu, L., Meyers, T., Pallardy, S., Hanson, P., Yang, B., Heuer, M., Hosman, K., Riggs, J., Sluss, D., and Wullschleger, S.: Direct and indirect effects of atmospheric conditions and soil moisture on surface energy partitioning revealed by a prolonged drought at a temperate forest site, J. Geophys. Res.-Atmos., 111, D16102, https://doi.org/10.1029/2006JD007161, 2006.
Hadley, J. and Schedlbauer, J.: Carbon exchange of an old-growth eastern hemlock(Tsuga canadensis) forest in central New England, Tree Physiol., 22, 1079–1092, 2002.
Hanson, P., Wullschleger, S., Norby, R., Tschaplinski, T., and Gunderson, C.: Importance of changing CO2, temperature, precipitation, and ozone on carbon and water cycles of an upland-oak forest: incorporating experimental results into model simulations, Glob. Change Biol., 11, 1402–1423, 2005.
Harazono, Y., Mano, M., Miyata, A., Zulueta, R., and Oechel, W.: Inter-annual carbon dioxide uptake of a wet sedge tundra ecosystem in the Arctic, Tellus B, 55, 215–231, 2003.
Heinsch, F., Heilman, J., McInnes, K., Cobos, D., Zuberer, D., and Roelke, D.: Carbon dioxide exchange in a high marsh on the Texas Gulf Coast: effects of freshwater availability, Agr. Forest Meteorol., 125, 159–172, 2004.
Hibbard, K., Law, B., Reichstein, M., and Sulzman, J.: An analysis of soil respiration across northern hemisphere temperate ecosystems, Biogeochemistry, 73, 29–70, 2005.
Hilborn, R. and Mangel, M.: The ecological detective: confronting models with data, Princeton University Press, Princeton, NJ, USA, 1997.
Hilton, T. W., Davis, K. J., Keller, K., and Urban, N. M.: Improving North American terrestrial CO2 flux diagnosis using spatial structure in land surface model residuals, Biogeosciences, 10, 4607–4625, https://doi.org/10.5194/bg-10-4607-2013, 2013.
Hollinger, D., Goltz, S., Davidson, E., Lee, J., Tu, K., and Valentine, H.: Seasonal patterns and environmental control of carbon dioxide and water vapour exchange in an ecotonal boreal forest, Glob. Change Biol., 5, 891–902, 1999.
Hollinger, D. Y., Aber, J., Dail, B., Davidson, E. A., Goltz, S. M., Hughes, H., Leclerc, M. Y., Lee, J. T., Richardson, A. D., Rodrigues, C., Scott, N., Achuatavarier, D., and Walsh, J.: Spatial and temporal variability in forest-atmosphere CO2 exchange, Glob. Change Biol., 10, 1689–1706, https://doi.org/10.1111/j.1365-2486.2004.00847.x, 2004.
Howard, E., Gower, S., Foley, J., and Kucharik, C.: Effects of logging on carbon dynamics of a jack pine forest in Saskatchewan, Canada, Glob. Change Biol., 10, 1267–1284, 2004.
Huete, A., Justice, C., and van Leeuwen, W.: MODIS vegetation index (MOD 13) algorithm theoretical basis document, Version 3, available at: http://modis.gsfc.nasa.gov/data/atbd/atbd_mod13.pdf (last access: 1 June 2012), 1999.
Huete, A., Didan, K., Miura, T., Rodriguez, E., Gao, X., and Ferreira, L.: Overview of the radiometric and biophysical performance of the MODIS vegetation indices, Remote Sens. Environ., 83, 195–213, 2002.
Humphreys, E., Black, T., Morgenstern, K., Cai, T., Drewitt, G., Nesic, Z., and Trofymow, J.: Carbon dioxide fluxes in coastal Douglas-fir stands at different stages of development after clearcut harvesting, Agr. Forest Meteorol., 140, 6–22, 2006.
Hunter, J. D.: Matplotlib: A 2D graphics environment, Comput. Sci. Eng., 9, 90–95, 2007.
Janssens, I., Freibauer, A., Ciais, P., Smith, P., Nabuurs, G., Folberth, G., Schlamadinger, B., Hutjes, R., Ceulemans, R., Schulze, E.-D., Valentini, R., and Dolman, A.: Europe's Terrestrial Biosphere Absorbs 7 to 12 % of European Anthropogenic CO2 Emissions, Science, 300, 1538–1542, https://doi.org/10.1126/science.1083592, 2003.
Jones, E., Oliphant, T., Peterson, P., and others}: SciPy: Open source scientific tools for {Python, http://www.scipy.org/ (last access: 14 August 2013), 2001.
Jung, M., Reichstein, M., Ciais, P., Seneviratne, S. I., Sheffield, J., Goulden, M. L., Bonan, G., Cescatti, A., Chen, J., de Jeu, R., Dolman, A. J., Eugster, W., Gerten, D., Gianelle, D., Gobron, N., Heinke, J., Kimball, J., Law, B. E., Montagnani, L., Mu, Q., Mueller, B., Oleson, K., Papale, D., Richardson, A. D., Roupsard, O., Running, S., Tomelleri, E., Viovy, N., Weber, U., Williams, C., Wood, E., Zaehle, S., and Zhang, K.: Recent decline in the global land evapotranspiration trend due to limited moisture supply, Nature, 467, 951–954, https://doi.org/10.1038/nature09396, 2010.
Kalnay, E., Kanamitsu, M., Kistler, R., Collins, W., Deaven, D., Gandin, L., Iredell, M., Saha, S., White, G., Woollen, J., Zhu, Y., Leetmaa, A., Reynolds, R., Chelliah, M., Ebisuzaki, W., Higgins, W., Janowiak, J., Mo, K., Ropelewski, C., and Wang, J.: The NCEP/NCAR 40-year reanalysis project, B. Am. Meteorol. Soc., 77, 437–471, 1996.
Keeling, R., Piper, S., and Heimann, M.: Global and hemispheric CO2 sinks deduced from changes in atmospheric O2 concentration, Nature, 381, 218–221, 1996.
Lafleur, P., Roulet, N., Bubier, J., Frolking, S., and Moore, T.: Interannual variability in the peatland-atmosphere carbon dioxide exchange at an ombrotrophic bog, Global Biogeochem. Cy., 17, 1036, https://doi.org/10.1029/2002GB001983, 2003.
Litvak, M., Miller, S., Wofsy, S. C., and Goulden, M.: Effect of stand age on whole ecosystem CO2 exchange in the Canadian boreal forest, J. Geophys. Res.-Atmos., 108, 8225, https://doi.org/10.1029/2001JD000854, 2003.
Liu, H., Randerson, J., Lindfors, J., and Chapin III, F.: Changes in the surface energy budget after fire in boreal ecosystems of interior Alaska: An annual perspective, J. Geophys. Res, 110, D13101, https://doi.org/10.1029/2004JD005158, 2005.
Lokupitiya, E., Denning, S., Paustian, K., Baker, I., Schaefer, K., Verma, S., Meyers, T., Bernacchi, C. J., Suyker, A., and Fischer, M.: Incorporation of crop phenology in Simple Biosphere Model (SiBcrop) to improve land-atmosphere carbon exchanges from croplands, Biogeosciences, 6, 969–986, https://doi.org/10.5194/bg-6-969-2009, 2009.
Loveland, T. and Belward, A.: The IGBP-DIS global 1km land cover data set, DISCover: first results, Int. J. Remote Sens., 18, 3289–3295, 1997.
Luo, H., Oechel, W., Hastings, S., Zulueta, R., Qian, Y., and Kwon, H.: Mature semiarid chaparral ecosystems can be a significant sink for atmospheric carbon dioxide, Glob. Change Biol., 13, 386–396, 2007.
Ma, S., Baldocchi, D., Xu, L., and Hehn, T.: Inter-annual variability in carbon dioxide exchange of an oak/grass savanna and open grassland in California, Agr. Forest Meteorol., 147, 157–171, 2007.
Mahadevan, P., Wofsy, S., Matross, D., Xiao, X., Dunn, A., Lin, J., Gerbig, C., Munger, J., Chow, V., and Gottlieb, E.: A Satellite-Based Biosphere Parameterization for Net Ecosystem CO2 Exchange: Vegetation Photosynthesis and Respiration Model (VPRM), Global Biogeochem. Cy., 22, GB2005, https://doi.org/10.1029/2006GB002735, 2008.
McCaughey, J., Pejam, M., Arain, M., and Cameron, D.: Carbon dioxide and energy fluxes from a boreal mixedwood forest ecosystem in Ontario, Canada, Agr. Forest Meteorol., 140, 79–96, 2006.
Meyers, T. and Hollinger, S.: An assessment of storage terms in the surface energy balance of maize and soybean, Agr. Forest Meteorol., 125, 105–115, 2004.
Mkhabela, M., Amiro, B., Barr, A., Black, T., Hawthorne, I., Kidston, J., McCaughey, J., Orchansky, A., Nesic, Z., Sass, A., Shashkov, A., and Zha, T.: Comparison of carbon dynamics and water use efficiency following fire and harvesting in Canadian boreal forests, Agr. Forest Meteorol., 149, 783–794, https://doi.org/10.1016/j.agrformet.2008.10.025, 2009.
Moffat, A. M., Papale, D., Reichstein, M., Hollinger, D. Y., Richardson, A. D., Barr, A. G., Beckstein, C., Braswell, B. H., Churkina, G., Desai, A. R., Falge, E., Gove, J. H., Heimann, M., Hui, D., Jarvis, A. J., Kattge, J., Noormets, A., and Stauch, V. J.: Comprehensive comparison of gap-filling techniques for eddy covariance net carbon fluxes, Agr. Forest Meteorol., 147, 209–232, https://doi.org/10.1016/j.agrformet.2007.08.011, 2007.
Monson, R., Turnipseed, A., Sparks, J., Harley, P., Scott-Denton, L., Sparks, K., and Huxman, T.: Carbon sequestration in a high-elevation, subalpine forest, Glob. Change Biol., 8, 459–478, 2002.
Myneni, R. B., Dong, J., Tucker, C. J., Kaufmann, R. K., Kauppi, P. E., Liski, J., Zhou, L., Alexeyev, V., and Hughes, M. K.: A large carbon sink in the woody biomass of Northern forests, P. Natl. Acad. Sci., 98, 14784–14789, https://doi.org/10.1073/pnas.261555198, 2001.
Noormets, A., Chen, J., and Crow, T.: Age-Dependent Changes in Ecosystem Carbon Fluxes in Managed Forests in Northern Wisconsin, USA, Ecosystems, 10, 187–203, https://doi.org/10.1007/s10021-007-9018-y, 2007.
Noormets, A., Desai, A., Cook, B., Euskirchen, E., Ricciuto, D., Davis, K., Bolstad, P., Schmid, H., Vogel, C., Carey, E., Su, H., and Chen, J.: Moisture sensitivity of ecosystem respiration: Comparison of 14 forest ecosystems in the Upper Great Lakes Region, USA, Agr. Forest Meteorol., 148, 216–230, https://doi.org/10.1016/j.agrformet.2007.08.002, 2008.
Oechel, W., Vourlitis, G., Hastings, S., Zulueta, R., Hinzman, L., and Kane, D.: Acclimation of ecosystem CO2 exchange in the Alaskan Arctic in response to decadal climate warming, Nature, 406, 978–981, 2000.
Papale, D., Reichstein, M., Aubinet, M., Canfora, E., Bernhofer, C., Kutsch, W., Longdoz, B., Rambal, S., Valentini, R., Vesala, T., and Yakir, D.: Towards a standardized processing of Net Ecosystem Exchange measured with eddy covariance technique: algorithms and uncertainty estimation, Biogeosciences, 3, 571–583, https://doi.org/10.5194/bg-3-571-2006, 2006.
Pebesma, E.: Multivariable geostatistics in S: the gstat package, Comput. Geosci., 30, 683–691, 2004.
Peichl, M. and Arain, M.: Above-and belowground ecosystem biomass and carbon pools in an age-sequence of temperate pine plantation forests, Agr. Forest Meteorol., 140, 51–63, 2006.
Peters, W., Jacobson, A. R., Sweeney, C., Andrews, A. E., Conway, T. J., Masarie, K., Miller, J. B., Bruhwiler, L. M. P., Pétron, G., Hirsch, A. I., Worthy, D. E. J., van der Werf, G. R., Randerson, J. T., Wennberg, P. O., Krol, M. C., and Tans, P. P.: An atmospheric perspective on North American carbon dioxide exchange: CarbonTracker, P. Natl. Acad. Sci., 104, 18925–18930, https://doi.org/10.1073/pnas.0708986104, 2007.
Potter, C., Klooster, S., Huete, A., and Genovese, V.: Terrestrial Carbon Sinks for the United States Predicted from MODIS Satellite Data and Ecosystem Modeling, Earth Interact., 11, 1–21, 2007.
Powell, T., Bracho, R., Li, J., Dore, S., Hinkle, C., and Drake, B.: Environmental controls over net ecosystem carbon exchange of scrub oak in central Florida, Agr. Forest Meteorol., 141, 19–34, 2006.
Powell, T., Gholz, H., Clark, K., Starr, G., Cropper, W., and Martin, T.: Carbon exchange of a mature, naturally regenerated pine forest in north Florida, Glob. Change Biol., 14, 2523–2538, 2008.
R Development Core Team: R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, http://www.R-project.org (last access: 4 June 2012), ISBN 3-900051-07-0, 2007.
Ribeiro Jr., P. and Diggle, P.: geoR: a package for geostatistical analysis, R-NEWS, 1, 14–18, http://CRAN.R-project.org/doc/Rnews/ (last access: 1 June 2012), ISSN 1609-3631, 2001.
Ricciuto, D., Butler, M., Davis, K., Cook, B., Bakwin, P., Andrews, A., and Teclaw, R.: A B}ayesian synthesis inversion of simple respiration and GEP models with eddy covariance data in a northern {Wisconsin forest: Determining the causes of interannual variability, Agr. Forest Meteorol., 148, 309–327, 2008.
Richardson, A., Hollinger, D., Burba, G., Davis, K., Flanagan, L., Katul, G., Munger, J., Ricciuto, D., Stoy, P., Suyker, A., Verma, S., and Wofsy, S.: A multi-site analysis of random error in tower-based measurements of carbon and energy fluxes, Agr. Forest Meteorol., 136, 1–18, 2006.
Richardson, A. D. and Hollinger, D. Y.: Statistical modeling of ecosystem respiration using eddy covariance data: Maximum likelihood parameter estimation, and Monte Carlo simulation of model and parameter uncertainty, applied to three simple models, Agr. Forest Meteorol., 131, 191–208, https://doi.org/10.1016/j.agrformet.2005.05.008, 2005.
Roy, D., Borak, J., Devadiga, S., Wolfe, R., Zheng, M., and Descloitres, J.: The MODIS land product quality assessment approach, Remote Sens. Environ., 83, 62–76, 2002.
Running, S., Nemani, R., Heinsch, F., Zhao, M., Reeves, M., and Hashimoto, H.: A continuous satellite-derived measure of global terrestrial primary production, BioScience, 54, 547–560, 2004.
Schaaf, C. B., Gao, F., Strahler, A. H., Lucht, W., Li, X., Tsang, T., Strugnell, N. C., Zhang, X., Jin, Y., Muller, J.-P., Lewis, P., Barnsley, M., Hobson, P., Disney, M., Roberts, G., Dunderdale, M., Doll, C., d'Entremont, R. P., Hu, B., Liang, S., Privette, J. L., and Roy, D.: First operational BRDF, albedo nadir reflectance products from MODIS, Remote Sens. Environ., 83, 135–148, https://doi.org/10.1016/S0034-4257(02)00091-3, 2002.
Schmid, H., Grimmond, C., Cropley, F., Offerle, B., and Su, H.: Measurements of CO2 and energy fluxes over a mixed hardwood forest in the mid-western United States, Agr. Forest Meteorol., 103, 357–374, 2000.
Schwalm, C. R., Williams, C. A., Schaefer, K., Arneth, A., Bonal, D., Buchmann, N., Chen, J., Law, B. E., Lindroth, A., Luyssaert, S., Reichstein, M., and Richardson, A. D.: Assimilation exceeds respiration sensitivity to drought: A FLUXNET synthesis, Glob. Change Biol., 16, 657–670, https://doi.org/10.1111/j.1365-2486.2009.01991.x, 2010.
Schwalm, C. R., Williams, C. A., Schaefer, K., Baker, I., Collatz, G. J., and Rödenbeck, C.: Does terrestrial drought explain global CO2 flux anomalies induced by El Niño?, Biogeosciences, 8, 2493–2506, https://doi.org/10.5194/bg-8-2493-2011, 2011.
Scott, R. L., Jenerette, G. D., Potts, D. L., and Huxman, T. E.: Effects of seasonal drought on net carbon dioxide exchange from a woody-plant-encroached semiarid grassland, J. Geophys. Res.-Biogeo., 114, n/a–n/a, https://doi.org/10.1029/2008JG000900, 2009.
Sheffield, J., Goteti, G., and Wood, E.: Development of a 50-year high-resolution global dataset of meteorological forcings for land surface modeling, J. Climate, 19, 3088–3111, 2006.
Smith, M., Ollinger, S., Martin, M., Aber, J., Hallett, R., and Goodale, C.: Direct estimation of aboveground forest productivity through hyperspectral remote sensing of canopy nitrogen, Ecol. Appl., 12, 1286–1302, 2002.
Stoy, P., Katul, G., Siqueira, M., Juang, J., Novick, K., Uebelherr, J., and Oren, R.: An evaluation of models for partitioning eddy covariance-measured net ecosystem exchange into photosynthesis and respiration, Agr. Forest Meteorol., 141, 2–18, 2006.
Strahler, A., Muchoney, D., Borak, J., Friedl, M., Gopal, S., Lambin, E., and Moody, A.: MODIS Land Cover Product Algorithm Theoretical Basis Document (ATBD) MODIS Land Cover and Land-Cover Change, USGS, NASA, http://modis.gsfc.nasa.gov/data/atbd/atbd_mod12.pdf, (last access: 4 June 2012), 1999.
Sulman, B. N., Desai, A. R., Cook, B. D., Saliendra, N., and Mackay, D. S.: Contrasting carbon dioxide fluxes between a drying shrub wetland in Northern Wisconsin, USA, and nearby forests, Biogeosciences, 6, 1115–1126, https://doi.org/10.5194/bg-6-1115-2009, 2009.
Sun, G., Noormets, A., Gavazzi, M., McNulty, S., Chen, J., Domec, J., King, J., Amatya, D., and Skaggs, R.: Energy and water balance of two contrasting loblolly pine plantations on the lower coastal plain of North Carolina, USA, Forest Ecol. Manag., 259, 1299–1310, 2010.
Thomas, C., Law, B., Irvine, J., Martin, J., Pettijohn, J., and Davis, K.: Seasonal hydrology explains interannual and seasonal variation in carbon and water exchange in a semiarid mature ponderosa pine forest in central Oregon, J. Geophys. Res., 114, G04006, https://doi.org/10.1029/2009JG001010, 2009.
Urbanski, S., Barford, C., Wofsy, S., Kucharik, C., Pyle, E., Budney, J., McKain, K., Fitzjarrald, D., Czikowsky, M., and Munger, J.: Factors controlling CO2 exchange on timescales from hourly to decadal at Harvard Forest, J. Geophys. Res., 112, G02020, https://doi.org/10.1029/2006JG000293, 2007.
Verma, S. B., Dobermann, A., Cassman, K. G., Walters, D. T., Knops, J. M., Arkebauer, T. J., Suyker, A. E., Burba, G. G., Amos, B., Yang, H., Ginting, D., Hubbard, K. G., Gitelson, A. A., and Walter-Shea, E. A.: Annual carbon dioxide exchange in irrigated and rainfed maize-based agroecosystems, Agr. Forest Meteorol., 131, 77–96, https://doi.org/10.1016/j.agrformet.2005.05.003, 2005.
Williams, M., Richardson, A. D., Reichstein, M., Stoy, P. C., Peylin, P., Verbeeck, H., Carvalhais, N., Jung, M., Hollinger, D. Y., Kattge, J., Leuning, R., Luo, Y., Tomelleri, E., Trudinger, C. M., and Wang, Y. P.: Improving land surface models with FLUXNET data, Biogeosciences, 6, 1341–1359, https://doi.org/10.5194/bg-6-1341-2009, 2009.
Wilson, T. and Meyers, T.: Determining vegetation indices from solar and photosynthetically active radiation fluxes, Agr. Forest Meteorol., 144, 160–179, https://doi.org/10.1016/j.agrformet.2007.04.001, 2007.
Xiao, J., Zhuang, Q., Baldocchi, D., Law, B., Richardson, A., Chen, J., Oren, R., Starr, G., Noormets, A., Ma, S., Verma, S., Wharton, S., Wofsy, S., Bolstad, P., Burns, S., Cook, D., Curtis, P., Drake, B., Falk, M., Fischer, M., Foster, D., Gu, L., Hadley, J., Hollinger, D., Katul, G., Litvak, M., Martin, T., Matamala, R., McNulty, S., Meyers, T., Monson, R., Munger, J., Oechel, W., U, K. P., Schmid, H., Scott, R., Sun, G., Suyker, A., and Torn, M.: Estimation of net ecosystem carbon exchange for the conterminous United States by combining MODIS and AmeriFlux data, Agr. Forest Meteorol., 148, 1827–1847, https://doi.org/10.1016/j.agrformet.2008.06.015, 2008.
Xiao, J., Zhuang, Q., Law, B. E., Baldocchi, D. D., Chen, J., Richardson, A. D., Melillo, J. M., Davis, K. J., Hollinger, D. Y., Wharton, S., Oren, R., Noormets, A., Fischer, M. L., Verma, S. B., Cook, D. R., Sun, G., McNulty, S., Wofsy, S. C., Bolstad, P. V., Burns, S. P., Curtis, P. S., Drake, B. G., Falk, M., Foster, D. R., Gu, L., Hadley, J. L., Katul, G. G., Litvak, M., Ma, S., Martin, T. A., Matamala, R., Meyers, T. P., Monson, R. K., Munger, J. W., Oechel, W. C., Paw, U. K. T., Schmid, H. P., Scott, R. L., Starr, G., Suyker, A. E., and Torn, M. S.: Assessing net ecosystem carbon exchange of U.S. terrestrial ecosystems by integrating eddy covariance flux measurements and satellite observations, Agr. Forest Meteorol., 151, 60–69, https://doi.org/10.1016/j.agrformet.2010.09.002, 2011.
Yang, Z., Washenfelder, R., Keppel-Aleks, G., Krakauer, N., Randerson, J. T., Tans, P. P., Sweeney, C., and Wennberg, P. O.: New constraints on Northern Hemisphere growing season net flux, Geophys. Res. Lett., 34, L12807, https://doi.org/10.1029/2007GL029742, 2007.
Yuan, W., Liu, S., Yu, G., Bonnefond, J.-M., Chen, J., Davis, K., Desai, A. R., Goldstein, A. H., Gianelle, D., Rossi, F., Suyker, A. E., and Verma, S. B.: Global estimates of evapotranspiration and gross primary production based on {MODIS} and global meteorology data, Remote Sens. Environ., 114, 1416–1431, https://doi.org/10.1016/j.rse.2010.01.022, 2010.
Zha, T., Barr, A. G., Black, T. A., McCaughey, J. H., Bhatti, J., Hawthorne, I., Krishnan, P., Kidston, J., Saigusa, N., Shashkov, A., and Nesic, Z.: Carbon sequestration in boreal jack pine stands following harvesting, Glob. Change Biol., 15, 1475–1487, https://doi.org/10.1111/j.1365-2486.2008.01817.x, 2009.
Zhang, X., Friedl, M. A., Schaaf, C. B., Strahler, A. H., Hodges, J. C. F., Gao, F., Reed, B. C., and Huete, A.: Monitoring vegetation phenology using MODIS, Remote Sens. Environ., 84, 471–475, https://doi.org/10.1016/S0034-4257(02)00135-9, 2003.
Altmetrics
Final-revised paper
Preprint