Articles | Volume 11, issue 15
https://doi.org/10.5194/bg-11-4139-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-4139-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
06 Aug 2014
Research article |
| 06 Aug 2014
Effects of heat and drought on carbon and water dynamics in a regenerating semi-arid pine forest: a combined experimental and modeling approach
N. K. Ruehr
Karlsruhe Institute of Technology, Institute of Meteorology and Climatology – Institute of Atmospheric Environmental Research, 82467 Garmisch-Partenkirchen, Germany
B. E. Law
Oregon State University, College of Forestry, Department of Forest Ecosystems and Society, Corvallis, OR 97331, USA
D. Quandt
Oregon State University, College of Forestry, Department of Forest Ecosystems and Society, Corvallis, OR 97331, USA
M. Williams
University of Edinburgh, School of GeoSciences, Edinburgh EH9 3JN, UK
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Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
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This study explores year-round forest-floor greenhouse gas (GHG) fluxes in a Swiss spruce forest. Soil temperature and snow depth affected forest-floor respiration, while CH4 uptake was linked to snow cover. Negligible N2O fluxes were observed. In 2022, a warm year, CO2 emissions notably increased. The study suggests rising forest-floor GHG emissions due to climate change, impacting carbon sink behavior. Thus, for future forest management, continuous year-round GHG flux measurements are crucial.
Simone Rodrigues, Glauber Cirino, Demerval Moreira, Andrea Pozzer, Rafael Palácios, Sung-Ching Lee, Breno Imbiriba, José Nogueira, Maria Isabel Vitorino, and George Vourlitis
Biogeosciences, 21, 843–868, https://doi.org/10.5194/bg-21-843-2024, https://doi.org/10.5194/bg-21-843-2024, 2024
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The radiative effects of atmospheric particles are still unknown for a wide variety of species and types of vegetation present in Amazonian biomes. We examined the effects of aerosols on solar radiation and their impacts on photosynthesis in an area of semideciduous forest in the southern Amazon Basin. Under highly smoky-sky conditions, our results show substantial photosynthetic interruption (20–70 %), attributed specifically to the decrease in solar radiation and leaf canopy temperature.
Ruben B. Schulte, Jordi Vilà-Guerau de Arellano, Susanna Rutledge-Jonker, Shelley van der Graaf, Jun Zhang, and Margreet C. van Zanten
Biogeosciences, 21, 557–574, https://doi.org/10.5194/bg-21-557-2024, https://doi.org/10.5194/bg-21-557-2024, 2024
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We analyzed measurements with the aim of finding relations between the surface atmosphere exchange of NH3 and the CO2 uptake and transpiration by vegetation. We found a high correlation of daytime NH3 emissions with both latent heat flux and photosynthetically active radiation. Very few simultaneous measurements of NH3, CO2 fluxes and meteorological variables exist at sub-diurnal timescales. This study paves the way to finding more robust relations between the NH3 exchange flux and CO2 uptake.
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We present an analysis of soil CO2 emissions in boreal and tundra regions during the non-growing season. We show that when the soil is completely frozen, soil temperature is the main control on CO2 emissions. When the soil is around the freezing point, with a mix of liquid water and ice, the liquid water content is the main control on CO2 emissions. This study highlights that the vegetation–snow–soil interactions must be considered to understand soil CO2 emissions during the non-growing season.
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Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
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The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
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Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
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Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
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We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
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This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
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Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
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Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
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Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
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As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
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For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
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We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
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Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
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Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
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Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
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We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
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A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
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The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
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Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
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This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
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To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
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This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
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This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
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We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
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We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
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Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
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Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Junqi Wei, Xiaoyan Li, Lei Liu, Torben Røjle Christensen, Zhiyun Jiang, Yujun Ma, Xiuchen Wu, Hongyun Yao, and Efrén López-Blanco
Biogeosciences, 19, 861–875, https://doi.org/10.5194/bg-19-861-2022, https://doi.org/10.5194/bg-19-861-2022, 2022
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Although water availability has been linked to the response of ecosystem carbon (C) sink–source to climate warming, the mechanisms by which C uptake responds to soil moisture remain unclear. We explored how soil water and other environmental drivers modulate net C uptake in an alpine swamp meadow. Results reveal that nearly saturated soil conditions during warm seasons can help to maintain lower ecosystem respiration and therefore enhance the C sequestration capacity in this alpine swamp meadow.
Martijn M. T. A. Pallandt, Jitendra Kumar, Marguerite Mauritz, Edward A. G. Schuur, Anna-Maria Virkkala, Gerardo Celis, Forrest M. Hoffman, and Mathias Göckede
Biogeosciences, 19, 559–583, https://doi.org/10.5194/bg-19-559-2022, https://doi.org/10.5194/bg-19-559-2022, 2022
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Thawing of Arctic permafrost soils could trigger the release of vast amounts of carbon to the atmosphere, thus enhancing climate change. Our study investigated how well the current network of eddy covariance sites to monitor greenhouse gas exchange at local scales captures pan-Arctic flux patterns. We identified large coverage gaps, e.g., in Siberia, but also demonstrated that a targeted addition of relatively few sites can significantly improve network performance.
Cited articles
Ainsworth, E. A. and Long, S. P.: What have we learned from 15 years of free-air CO2 enrichment (FACE)? A meta-analytic review of the responses of photosynthesis, canopy properties and plant production to rising CO2, New Phytol., 165, 351–372, https://doi.org/10.1111/j.1469-8137.2004.01224.x, 2005.
Andersen, C. P., Phillips, D. L., Rygiewicz, P. T., and Storm, M. J.: Fine root growth and mortality in different-aged ponderosa pine stands, Can. J. Forest Res., 38, 1797–1806, https://doi.org/10.1139/X08-029, 2008.
De Boeck, H. J. and Verbeeck, H.: Drought-associated changes in climate and their relevance for ecosystem experiments and models, Biogeosciences, 8, 1121–1130, https://doi.org/10.5194/bg-8-1121-2011, 2011.
DeLucia, E., Maherali, H., and Carey, E.: Climate-driven changes in biomass allocation in pines, Glob. Change Biol., 6, 587–593, https://doi.org/10.1046/j.1365-2486.2000.00338.x, 2000.
Domec, J., Warren, J., Meinzer, F., Brooks, J., and Coulombe, R.: Native root xylem embolism and stomatal closure in stands of Douglas-fir and ponderosa pine: mitigation by hydraulic redistribution, Oecologia, 141, 7–16, https://doi.org/10.1007/s00442-004-1621-4, 2004.
Domec, J.-C., King, J. S., Noormets, A., Treasure, E., Gavazzi, M. J., Sun, G., and McNulty, S. G.: Hydraulic redistribution of soil water by roots affects whole-stand evapotranspiration and net ecosystem carbon exchange, New Phytol., 187, 171–183, 2010.
Easterling, D. R., Wallis, T. W. R., Lawrimore, J. H., and Heim, Richard R., J.: Effects of temperature and precipitation trends on US drought, Geophys. Res. Lett., 34, L20709, https://doi.org/10.1029/2007GL031541, 2007.
Fisher, R. A., Williams, M., Da Costa, A. L., Malhi, Y., Da Costa, R. F., Almeida, S., and Meir, P.: The response of an Eastern Amazonian rain forest to drought stress: results and modelling analyses from a throughfall exclusion experiment, Glob. Change Biol., 13, 2361–2378, https://doi.org/10.1111/j.1365-2486.2007.01417.x, 2007.
Flexas, J., Bota, J., Galmes, J., Medrano, H., and Ribas-Carbó, M.: Keeping a positive carbon balance under adverse conditions: responses of photosynthesis and respiration to water stress, Physiol. Plantarum, 127, 343–352, 2006.
Gu, L., Pallardy, S. G., Tu, K., Law, B. E., and Wullschleger, S. D.: Reliable estimation of biochemical parameters from C-3 leaf photosynthesis-intercellular carbon dioxide response curves, Plant Cell Environ., 33, 1852–1874, https://doi.org/10.1111/j.1365-3040.2010.02192.x, 2010.
Hannerz, M.: Evaluation of temperature models for predicting bud burst in Norway spruce, Can. J. Forest Res., 29, 9–19, 1999.
Hanson, P. and Weltzin, J.: Drought disturbance from climate change: response of United States forests, Sci. Total Environ., 262, 205–220, 2000.
Hudiburg, T. W., Law, B. E., and Thornton, P. E.: Evaluation and improvement of the Community Land Model (CLM4) in Oregon forests, Biogeosciences, 10, 453–470, https://doi.org/10.5194/bg-10-453-2013, 2013.
Irvine, J., Law, B., Kurpius, M., Anthoni, P., Moore, D., and Schwarz, P.: Age-related changes in ecosystem structure and function and effects on water and carbon exchange in ponderosa pine, Tree Physiol., 24, 753–763, 2004.
Irvine, J., Law, B. E., Martin, J. G., and Vickers, D.: Interannual variation in soil CO2 efflux and the response of root respiration to climate and canopy gas exchange in mature ponderosa pine, Glob. Change Biol., 14, 2848–2859, 2008.
Kelliher, F., Ross, D., Law, B., Baldocchi, D., and Rodda, N.: Limitations to carbon mineralization in litter and mineral soil of young and old ponderosa pine forests, Forest Ecol. Manage., 191, 201–213, 2004.
Klein, T., Hemming, D., Lin, T., Grunzweig, J., Maseyk, K., Rotenberg, E., and Yakir, D.: Association between tree-ring and needle delta C-13 and leaf gas exchange in Pinus halepensis under semi-arid conditions, Oecologia, 144, 45–54, https://doi.org/10.1007/s00442-005-0002-y, 2005.
Law, B., Cescatti, A., and Baldocchi, D.: Leaf area distribution and radiative transfer in open-canopy forests: implications for mass and energy exchange, Tree Physiol., 21, 777–787, 2001.
Martinez-Vilalta, J., Sala, A., and Pinol, J.: The hydraulic architecture of Pinaceae – a review, Plant Ecol., 171, 3–13, 2004.
Maseyk, K. S., Lin, T., Rotenberg, E., Gruenzweig, J. M., Schwartz, A., and Yakir, D.: Physiology-phenology interactions in a productive semi-arid pine forest, New Phytol., 178, 603–616, https://doi.org/10.1111/j.1469-8137.2008.02391.x, 2008.
McDowell, N., Pockman, W. T., Allen, C. D., Breshears, D. D., Cobb, N., Kolb, T., Plaut, J., Sperry, J., West, A., Williams, D. G., and Yepez, E. A.: Mechanisms of plant survival and mortality during drought: why do some plants survive while others succumb to drought?, New Phytol., 178, 719–739, https://doi.org/10.1111/j.1469-8137.2008.02436.x, 2008.
McDowell, N. G., Fisher, R. A., Xu, C., Domec, J. C., Hölttä, T., Mackay, D. S., Sperry, J. S., Boutz, A., Dickman, L., Gehres, N., Limousin, J. M., Macalady, A., Martínez-Vilalta, J., Mencuccini, M., Plaut, J. A., Ogée, J., Pangle, R. E., Rasse, D. P., Ryan, M. G., Sevanto, S., Waring, R. H., Williams, A. P., Yepez, E. A., and Pockman, W. T.: Evaluating theories of drought-induced vegetation mortality using a multimodel–experiment framework, New Phytol., 200, 304–321, https://doi.org/10.1111/nph.12465, 2013.
Misson, L., Tu, K., Boniello, R., and Goldstein, A.: Seasonality of photosynthetic parameters in a multi-specific and vertically complex forest ecosystem in the Sierra Nevada of California, Tree Physiol., 26, 729–741, 2006.
Moldrup, P., Olesen, T., Komatsu, T., Schjonning, P., and Rolston, D.: Tortuosity, diffusivity, and permeability in the soil liquid and gaseous phases, Soil Sci. Soc. Am. J., 65, 613–623, 2001.
Mote, P., Bethel, J., Capalbo, S., Dalton, M., Eigenbrode, S., Glick, P., Houston, L., Littell, J., Lynn, K., Raymondi, R., Reeder, W., and Snover, A.: Climate Change in the Northwest, Brief Summary, 2013.
Nowak, R. S., Ellsworth, D. S., and Smith, S. D.: Functional responses of plants to elevated atmospheric CO2–do photosynthetic and productivity data from FACE experiments support early predictions?, New Phytol., 162, 253–280, https://doi.org/10.1111/j.1469-8137.2004.01033.x, 2004.
Perry, L. G., Shafroth, P. B., Blumenthal, D. M., Morgan, J. A., and LeCain, D. R.: Elevated CO2 does not offset greater water stress predicted under climate change for native and exotic riparian plants, New Phytol., 197, 532–543, https://doi.org/10.1111/nph.12030, 2013.
Pierce, J., Meyer, G., and Jull, A.: Fire-induced erosion and millennialscale climate change in northern ponderosa pine forests, Nature, 432, 87–90, 2004.
R Development Core Team: R: A Language and Environment for Statistical Computing, R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0, 2010.
Raz-Yaseef, N., Rotenberg, E., and Yakir, D.: Effects of spatial variations in soil evaporation caused by tree shading on water flux partitioning in a semi-arid pine forest, Agr. Forest Meteorol., 150, 454–462, 2010.
Richardson, A. D., Keenan, T. F., Migliavacca, M., Ryu, Y., Sonnentag, O., and Toomey, M.: Climate change, phenology, and phenological control of vegetation feedbacks to the climate system, Agr. Forest Meteorol., 169, 156–173, https://doi.org/10.1016/j.agrformet.2012.09.012, 2013.
Ruehr, N. K. and Buchmann, N.: Soil respiration fluxes in a temperate mixed forest: seasonality and temperature sensitivities differ among microbial and root-rhizosphere respiration, Tree Physiol., 30, 165–176, https://doi.org/10.1093/treephys/tpp106, 2010.
Ruehr, N. K., Martin, J. G., and Law, B. E.: Effects of water availability on carbon and water exchange in a young ponderosa pine forest: Above- and belowground responses, Agr. Forest Meteorol., 164, 136–148, https://doi.org/10.1016/j.agrformet.2012.05.015, 2012.
Schwalm, C. R., Williams, C., Schaefer, K., Arneth, A., Bonal, D., Buchmann, N., Chen, J., Law, B. E., Lindroth, A., Luyssaert, S., Reichstein, M., and Richardson, A. D.: Assimilation exceeds respiration sensitivity to drought: A FLUXNET synthesis, Glob. Change Biol., 16, 657–670, 2009.
Schwalm, C. R., Williams, C. A., Schaefer, K., Baldocchi, D., Black, T. A., Goldstein, A. H., Law, B. E., Oechel, W. C., Paw U, K. T., and Scott, R. L.: Reduction in carbon uptake during turn of the century drought in western North America, Nat. Geosci., 5, 551–556, 2012.
Schwarz, P., Law, B., Williams, M., Irvine, J., Kurpius, M., and Moore, D.: Climatic versus biotic constraints on carbon and water fluxes in seasonally drought-affected ponderosa pine ecosystems, Global Biogeochem. Cy., 18, GB4007, https://doi.org/10.1029/2004GB002234, 2004.
Shi, Z., Thomey, M. L., Mowll, W., Litvak, M., Brunsell, N. A., Collins, S. L., Pockman, W. T., Smith, M. D., Knapp, A. K., and Luo, Y.: Differential effects of extreme drought on production and respiration: synthesis and modeling analysis, Biogeosciences, 11, 621–633, https://doi.org/10.5194/bg-11-621-2014, 2014.
Smith, N. G. and Dukes, J. S.: Plant respiration and photosynthesis in global-scale models: incorporating acclimation to temperature and CO2, Glob. Change Biol., 19, 45–63, https://doi.org/10.1111/j.1365-2486.2012.02797.x, 2013.
Sobeih, W. Y., Dodd, I. C., Bacon, M. A., Grierson, D., and Davies, W. J.: Long-distance signals regulating stomatal conductance and leaf growth in tomato (Lycopersicon esculentum) plants subjected to partial root-zone drying, J. Exp. Bot., 55, 2353–2363, https://doi.org/10.1093/jxb/erh204, 2004.
Sus, O., Williams, M., Bernhofer, C., Beziat, P., Buchmann, N., Ceschia, E., Doherty, R., Eugster, W., Gruenwald, T., Kutsch, W., Smith, P., and Wattenbach, M.: A linked carbon cycle and crop developmental model: Description and evaluation against measurements of carbon fluxes and carbon stocks at several European agricultural sites, Agr. Ecosyst. Environ., 139, 402–418, https://doi.org/10.1016/j.agee.2010.06.012, 2010.
Vickers, D., Thomas, C. K., Pettijohn, C., Martin, J. G., and Law, B. E.: Five years of carbon fluxes and inherent water-use efficiency at two semi-arid pine forests with different disturbance histories, Tellus B, 64, 17159, https://doi.org/10.3402/tellusb.v64i0.17159, 2012.
Williams, A. P., Allen, C. D., Macalady, A. K., Griffin, D., Woodhouse, C. A., Meko, D. M., Swetnam, T. W., Rauscher, S. A., Seager, R., Grissino-Mayer, H. D., Dean, J. S., Cook, E. R., Gangodagamage, C., Cai, M., and McDowell, N. G.: Temperature as a potent driver of regional forest drought stress and tree mortality, Nat. Clim. Change, 3, 292–297, https://doi.org/10.1038/NCLIMATE1693, 2013.
Williams, M., Rastetter, E., Fernandes, D., Goulden, M., Wofsy, S., Shaver, G., Melillo, J., Munger, J., Fan, S., and Nadelhoffer, K.: Modelling the soil-plant-atmosphere continuum in a Quercus-Acer stand at Harvard forest: The regulation of stomatal conductance by light, nitrogen and soil/plant hydraulic properties, Plant Cell Environ., 19, 911–927, https://doi.org/10.1111/j.1365-3040.1996.tb00456.x, 1996.
Williams, M., Law, B., Anthoni, P., and Unsworth, M.: Use of a simulation model and ecosystem flux data to examine carbon-water interactions in ponderosa pine, Tree Physiol., 21, 287–298, 2001.
Williams, M., Schwarz, P., Law, B., Irvine, J., and Kurpius, M.: An improved analysis of forest carbon dynamics using data assimilation, Glob. Change Biol., 11, 89–105, 2005.
Wright, J. K., Williams, M., Starr, G., McGee, J., and Mitchell, R. J.: Measured and modelled leaf and stand-scale productivity across a soil moisture gradient and a severe drought, Plant Cell Environ., 36, 467–483, https://doi.org/10.1111/j.1365-3040.2012.02590.x, 2013.
Zeppel, M., Macinnis-Ng, C., Palmer, A., Taylor, D., Whitley, R., Fuentes, S., Yunusa, I., Williams, M., and Eamus, D.: An analysis of the sensitivity of sap flux to soil and plant variables assessed for an Australian woodland using a soil-plant-atmosphere model, Funct. Plant Biol., 35, 509–520, https://doi.org/10.1071/FP08114, 2008.
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