Articles | Volume 11, issue 18
https://doi.org/10.5194/bg-11-5073-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-11-5073-2014
© Author(s) 2014. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
19 Sep 2014
Research article |
| 19 Sep 2014
Trimethylamine emissions in animal husbandry
J. Sintermann
Agroscope ISS, Zurich, Switzerland
S. Schallhart
University of Helsinki, Helsinki, Finland
M. Kajos
University of Helsinki, Helsinki, Finland
M. Jocher
Agroscope ISS, Zurich, Switzerland
A. Bracher
Agroscope ILS, Posieux, Switzerland
A. Münger
Agroscope ILS, Posieux, Switzerland
D. Johnson
SA Pathology, Adelaide, Australia
A. Neftel
Agroscope ISS, Zurich, Switzerland
T. Ruuskanen
University of Helsinki, Helsinki, Finland
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This study elucidates properties and sources of volatile organic compounds (VOCs) and organic aerosol (OA) in a traffic environment. Anthropogenic VOCs (aVOCs) were clearly higher than biogenic VOCs (bVOCs), but bVOCs produced a larger portion of oxidation products. OA consisted mostly of oxygenated OA, representing secondary OA (SOA). SOA was partly associated with bVOCs, but it was also related to long-range transport. Primary OA originated mostly from traffic.
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Wetlands cover a substantial fraction of the land mass in the northern latitudes, from northern Europe to Siberia and Canada. Yet, their isoprene and terpene emissions remain understudied. Here, we used a state-of-the-art measurement technique to quantify ecosystem-scale emissions from a boreal wetland during an unusually warm spring/summer. We found that the emissions from this wetland were (a) higher and (b) even more strongly dependent on temperature than commonly thought.
Marsailidh M. Twigg, Augustinus J. C. Berkhout, Nicholas Cowan, Sabine Crunaire, Enrico Dammers, Volker Ebert, Vincent Gaudion, Marty Haaima, Christoph Häni, Lewis John, Matthew R. Jones, Bjorn Kamps, John Kentisbeer, Thomas Kupper, Sarah R. Leeson, Daiana Leuenberger, Nils O. B. Lüttschwager, Ulla Makkonen, Nicholas A. Martin, David Missler, Duncan Mounsor, Albrecht Neftel, Chad Nelson, Eiko Nemitz, Rutger Oudwater, Celine Pascale, Jean-Eudes Petit, Andrea Pogany, Nathalie Redon, Jörg Sintermann, Amy Stephens, Mark A. Sutton, Yuk S. Tang, Rens Zijlmans, Christine F. Braban, and Bernhard Niederhauser
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Hannele Hakola, Ditte Taipale, Arnaud Praplan, Simon Schallhart, Steven Thomas, Toni Tykkä, Aku Helin, Jaana Bäck, and Heidi Hellén
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2022-478, https://doi.org/10.5194/acp-2022-478, 2022
Revised manuscript not accepted
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Yang Liu, Simon Schallhart, Ditte Taipale, Toni Tykkä, Matti Räsänen, Lutz Merbold, Heidi Hellén, and Petri Pellikka
Atmos. Chem. Phys., 21, 14761–14787, https://doi.org/10.5194/acp-21-14761-2021, https://doi.org/10.5194/acp-21-14761-2021, 2021
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We studied the mixing ratio of biogenic volatile organic compounds (BVOCs) in a humid highland and dry lowland African ecosystem in Kenya. The mixing ratio of monoterpenoids was similar to that measured in the relevant ecosystems in western and southern Africa, while that of isoprene was lower. Modeling the emission factors (EFs) for BVOCs from the lowlands, the EFs for isoprene and β-pinene agreed well with what is assumed in the MEGAN, while those of α-pinene and limonene were higher.
Heidi Hellén, Arnaud P. Praplan, Toni Tykkä, Aku Helin, Simon Schallhart, Piia P. Schiestl-Aalto, Jaana Bäck, and Hannele Hakola
Atmos. Chem. Phys., 21, 8045–8066, https://doi.org/10.5194/acp-21-8045-2021, https://doi.org/10.5194/acp-21-8045-2021, 2021
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Even though terpene emissions of boreal needle trees have been studied quite intensively, there is less knowledge of the emissions of broadleaved deciduous trees and emissions of larger terpenes and oxygenated volatile organic compounds. Here we studied downy birch (Betula pubescens) emissions, and especially sesquiterpene and oxygenated sesquiterpene emissions were found to be high. These emissions may have significant effects on secondary organic aerosol formation in boreal areas.
Christoph Häni, Marcel Bühler, Albrecht Neftel, Christof Ammann, and Thomas Kupper
Atmos. Meas. Tech., 14, 1733–1741, https://doi.org/10.5194/amt-14-1733-2021, https://doi.org/10.5194/amt-14-1733-2021, 2021
Arnaud P. Praplan, Toni Tykkä, Simon Schallhart, Virpi Tarvainen, Jaana Bäck, and Heidi Hellén
Biogeosciences, 17, 4681–4705, https://doi.org/10.5194/bg-17-4681-2020, https://doi.org/10.5194/bg-17-4681-2020, 2020
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In this paper, we study emissions of volatile organic compounds (VOCs) from three boreal tree species. Individual compounds are quantified with on-line separation analytical techniques, while the total reactivity of the emissions is measured using a custom-built instrument. On some occasions, in particular when the trees suffer from stress, the total reactivity measured is higher than the sum of the reactivity of individual compounds. This indicates that the threes emit VOCs that remain unknown.
Mario Simon, Lubna Dada, Martin Heinritzi, Wiebke Scholz, Dominik Stolzenburg, Lukas Fischer, Andrea C. Wagner, Andreas Kürten, Birte Rörup, Xu-Cheng He, João Almeida, Rima Baalbaki, Andrea Baccarini, Paulus S. Bauer, Lisa Beck, Anton Bergen, Federico Bianchi, Steffen Bräkling, Sophia Brilke, Lucia Caudillo, Dexian Chen, Biwu Chu, António Dias, Danielle C. Draper, Jonathan Duplissy, Imad El-Haddad, Henning Finkenzeller, Carla Frege, Loic Gonzalez-Carracedo, Hamish Gordon, Manuel Granzin, Jani Hakala, Victoria Hofbauer, Christopher R. Hoyle, Changhyuk Kim, Weimeng Kong, Houssni Lamkaddam, Chuan P. Lee, Katrianne Lehtipalo, Markus Leiminger, Huajun Mai, Hanna E. Manninen, Guillaume Marie, Ruby Marten, Bernhard Mentler, Ugo Molteni, Leonid Nichman, Wei Nie, Andrea Ojdanic, Antti Onnela, Eva Partoll, Tuukka Petäjä, Joschka Pfeifer, Maxim Philippov, Lauriane L. J. Quéléver, Ananth Ranjithkumar, Matti P. Rissanen, Simon Schallhart, Siegfried Schobesberger, Simone Schuchmann, Jiali Shen, Mikko Sipilä, Gerhard Steiner, Yuri Stozhkov, Christian Tauber, Yee J. Tham, António R. Tomé, Miguel Vazquez-Pufleau, Alexander L. Vogel, Robert Wagner, Mingyi Wang, Dongyu S. Wang, Yonghong Wang, Stefan K. Weber, Yusheng Wu, Mao Xiao, Chao Yan, Penglin Ye, Qing Ye, Marcel Zauner-Wieczorek, Xueqin Zhou, Urs Baltensperger, Josef Dommen, Richard C. Flagan, Armin Hansel, Markku Kulmala, Rainer Volkamer, Paul M. Winkler, Douglas R. Worsnop, Neil M. Donahue, Jasper Kirkby, and Joachim Curtius
Atmos. Chem. Phys., 20, 9183–9207, https://doi.org/10.5194/acp-20-9183-2020, https://doi.org/10.5194/acp-20-9183-2020, 2020
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Highly oxygenated organic compounds (HOMs) have been identified as key vapors involved in atmospheric new-particle formation (NPF). The molecular distribution, HOM yield, and NPF from α-pinene oxidation experiments were measured at the CLOUD chamber over a wide tropospheric-temperature range. This study shows on a molecular scale that despite the sharp reduction in HOM yield at lower temperatures, the reduced volatility counteracts this effect and leads to an overall increase in the NPF rate.
Heidi Hellén, Simon Schallhart, Arnaud P. Praplan, Toni Tykkä, Mika Aurela, Annalea Lohila, and Hannele Hakola
Atmos. Chem. Phys., 20, 7021–7034, https://doi.org/10.5194/acp-20-7021-2020, https://doi.org/10.5194/acp-20-7021-2020, 2020
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We studied biogenic volatile organic compound emissions and their ambient concentrations in a sub-Arctic wetland. Although isoprene was the main terpenoid emitted, sesquiterpene emissions were also highly significant, especially in early summer. Sesquiterpenes have much higher potential to form secondary organic aerosol than isoprenes. High sesquiterpene emissions during early summer suggested that melting snow and thawing soil could be an important source of these compounds.
Yonghong Wang, Matthieu Riva, Hongbin Xie, Liine Heikkinen, Simon Schallhart, Qiaozhi Zha, Chao Yan, Xu-Cheng He, Otso Peräkylä, and Mikael Ehn
Atmos. Chem. Phys., 20, 5145–5155, https://doi.org/10.5194/acp-20-5145-2020, https://doi.org/10.5194/acp-20-5145-2020, 2020
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Chamber experiments were conducted with alpha-pinene and chlorine under low- and high-nitrogen-oxide (NOX) conditions. We estimated the HOM yields from chlorine-initiated oxidation of alpha-pinene under low-NOX conditions to be around 1.8 %, though with a uncertainty range (0.8 %–4 %) due to lack of suitable calibration methods. Our study clearly demonstrates that the chlorine-atom-initiated oxidation of alpha-pinene can produce low-volatility organic compounds.
Philipp G. Eger, Jan Schuladen, Nicolas Sobanski, Horst Fischer, Einar Karu, Jonathan Williams, Matthieu Riva, Qiaozhi Zha, Mikael Ehn, Lauriane L. J. Quéléver, Simon Schallhart, Jos Lelieveld, and John N. Crowley
Atmos. Chem. Phys., 20, 3697–3711, https://doi.org/10.5194/acp-20-3697-2020, https://doi.org/10.5194/acp-20-3697-2020, 2020
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Pyruvic acid, CH3C(O)C(O)OH, is an organic acid of biogenic origin that plays a crucial role in plant metabolism, is present in tropospheric air in both gas-phase and aerosol-phase, and is implicated in the formation of secondary organic aerosols. From the first gas-phase measurements of pyruvic acid in the Finnish boreal forest in September 2016 we derive its source strength and discuss potential sources and sinks, with a focus on the relevance of gas-phase pyruvic acid for radical chemistry.
Chris R. Flechard, Andreas Ibrom, Ute M. Skiba, Wim de Vries, Marcel van Oijen, David R. Cameron, Nancy B. Dise, Janne F. J. Korhonen, Nina Buchmann, Arnaud Legout, David Simpson, Maria J. Sanz, Marc Aubinet, Denis Loustau, Leonardo Montagnani, Johan Neirynck, Ivan A. Janssens, Mari Pihlatie, Ralf Kiese, Jan Siemens, André-Jean Francez, Jürgen Augustin, Andrej Varlagin, Janusz Olejnik, Radosław Juszczak, Mika Aurela, Daniel Berveiller, Bogdan H. Chojnicki, Ulrich Dämmgen, Nicolas Delpierre, Vesna Djuricic, Julia Drewer, Eric Dufrêne, Werner Eugster, Yannick Fauvel, David Fowler, Arnoud Frumau, André Granier, Patrick Gross, Yannick Hamon, Carole Helfter, Arjan Hensen, László Horváth, Barbara Kitzler, Bart Kruijt, Werner L. Kutsch, Raquel Lobo-do-Vale, Annalea Lohila, Bernard Longdoz, Michal V. Marek, Giorgio Matteucci, Marta Mitosinkova, Virginie Moreaux, Albrecht Neftel, Jean-Marc Ourcival, Kim Pilegaard, Gabriel Pita, Francisco Sanz, Jan K. Schjoerring, Maria-Teresa Sebastià, Y. Sim Tang, Hilde Uggerud, Marek Urbaniak, Netty van Dijk, Timo Vesala, Sonja Vidic, Caroline Vincke, Tamás Weidinger, Sophie Zechmeister-Boltenstern, Klaus Butterbach-Bahl, Eiko Nemitz, and Mark A. Sutton
Biogeosciences, 17, 1583–1620, https://doi.org/10.5194/bg-17-1583-2020, https://doi.org/10.5194/bg-17-1583-2020, 2020
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Experimental evidence from a network of 40 monitoring sites in Europe suggests that atmospheric nitrogen deposition to forests and other semi-natural vegetation impacts the carbon sequestration rates in ecosystems, as well as the net greenhouse gas balance including other greenhouse gases such as nitrous oxide and methane. Excess nitrogen deposition in polluted areas also leads to other environmental impacts such as nitrogen leaching to groundwater and other pollutant gaseous emissions.
Chris R. Flechard, Marcel van Oijen, David R. Cameron, Wim de Vries, Andreas Ibrom, Nina Buchmann, Nancy B. Dise, Ivan A. Janssens, Johan Neirynck, Leonardo Montagnani, Andrej Varlagin, Denis Loustau, Arnaud Legout, Klaudia Ziemblińska, Marc Aubinet, Mika Aurela, Bogdan H. Chojnicki, Julia Drewer, Werner Eugster, André-Jean Francez, Radosław Juszczak, Barbara Kitzler, Werner L. Kutsch, Annalea Lohila, Bernard Longdoz, Giorgio Matteucci, Virginie Moreaux, Albrecht Neftel, Janusz Olejnik, Maria J. Sanz, Jan Siemens, Timo Vesala, Caroline Vincke, Eiko Nemitz, Sophie Zechmeister-Boltenstern, Klaus Butterbach-Bahl, Ute M. Skiba, and Mark A. Sutton
Biogeosciences, 17, 1621–1654, https://doi.org/10.5194/bg-17-1621-2020, https://doi.org/10.5194/bg-17-1621-2020, 2020
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Nitrogen deposition from the atmosphere to unfertilized terrestrial vegetation such as forests can increase carbon dioxide uptake and favour carbon sequestration by ecosystems. However the data from observational networks are difficult to interpret in terms of a carbon-to-nitrogen response, because there are a number of other confounding factors, such as climate, soil physical properties and fertility, and forest age. We propose a model-based method to untangle the different influences.
Rupert Holzinger, W. Joe F. Acton, William J. Bloss, Martin Breitenlechner, Leigh R. Crilley, Sébastien Dusanter, Marc Gonin, Valerie Gros, Frank N. Keutsch, Astrid Kiendler-Scharr, Louisa J. Kramer, Jordan E. Krechmer, Baptiste Languille, Nadine Locoge, Felipe Lopez-Hilfiker, Dušan Materić, Sergi Moreno, Eiko Nemitz, Lauriane L. J. Quéléver, Roland Sarda Esteve, Stéphane Sauvage, Simon Schallhart, Roberto Sommariva, Ralf Tillmann, Sergej Wedel, David R. Worton, Kangming Xu, and Alexander Zaytsev
Atmos. Meas. Tech., 12, 6193–6208, https://doi.org/10.5194/amt-12-6193-2019, https://doi.org/10.5194/amt-12-6193-2019, 2019
Qiaozhi Zha, Chao Yan, Heikki Junninen, Matthieu Riva, Nina Sarnela, Juho Aalto, Lauriane Quéléver, Simon Schallhart, Lubna Dada, Liine Heikkinen, Otso Peräkylä, Jun Zou, Clémence Rose, Yonghong Wang, Ivan Mammarella, Gabriel Katul, Timo Vesala, Douglas R. Worsnop, Markku Kulmala, Tuukka Petäjä, Federico Bianchi, and Mikael Ehn
Atmos. Chem. Phys., 18, 17437–17450, https://doi.org/10.5194/acp-18-17437-2018, https://doi.org/10.5194/acp-18-17437-2018, 2018
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Vertical measurements of highly oxygenated molecules (HOMs) below and above the forest canopy were performed for the first time in a boreal forest during September 2016. Our results highlight that near-ground HOM measurements may only be representative of a small fraction of the entire nocturnal boundary layer, which may sequentially influence the growth of newly formed particles and SOA formation close to ground surface, where the majority of measurements are conducted.
Jonathan Liebmann, Einar Karu, Nicolas Sobanski, Jan Schuladen, Mikael Ehn, Simon Schallhart, Lauriane Quéléver, Heidi Hellen, Hannele Hakola, Thorsten Hoffmann, Jonathan Williams, Horst Fischer, Jos Lelieveld, and John N. Crowley
Atmos. Chem. Phys., 18, 3799–3815, https://doi.org/10.5194/acp-18-3799-2018, https://doi.org/10.5194/acp-18-3799-2018, 2018
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Using a newly developed experimental setup, we have made the first direct measurements (during autumn 2016) of NO3 reactivity in the Finnish boreal forest. The NO3 reactivity was generally very high (maximum value of 0.94/s) so that daytime reaction with organics was a substantial fraction of the NO3 loss. Observations of biogenic hydrocarbons (BVOCs) suggested a dominant role for monoterpenes in determining the NO3 reactivity, which displayed a strong vertical gradient between 8.5 and 25 m.
Simon Schallhart, Pekka Rantala, Maija K. Kajos, Juho Aalto, Ivan Mammarella, Taina M. Ruuskanen, and Markku Kulmala
Atmos. Chem. Phys., 18, 815–832, https://doi.org/10.5194/acp-18-815-2018, https://doi.org/10.5194/acp-18-815-2018, 2018
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Emissions of volatile organic compounds (VOCs) have impact to air quality, human health and climate. We investigated the development of VOC exchange in a boreal forest between April and June 2013. VOC exchange and diversity increased towards summer, but over 75 % of the biogenic net exchange was driven by methanol, monoterpenes and acetone only. The boreal forest emitted less than 0.2 % carbon in form of VOCs in relation to the carbon uptake.
Robert Wagner, Chao Yan, Katrianne Lehtipalo, Jonathan Duplissy, Tuomo Nieminen, Juha Kangasluoma, Lauri R. Ahonen, Lubna Dada, Jenni Kontkanen, Hanna E. Manninen, Antonio Dias, Antonio Amorim, Paulus S. Bauer, Anton Bergen, Anne-Kathrin Bernhammer, Federico Bianchi, Sophia Brilke, Stephany Buenrostro Mazon, Xuemeng Chen, Danielle C. Draper, Lukas Fischer, Carla Frege, Claudia Fuchs, Olga Garmash, Hamish Gordon, Jani Hakala, Liine Heikkinen, Martin Heinritzi, Victoria Hofbauer, Christopher R. Hoyle, Jasper Kirkby, Andreas Kürten, Alexander N. Kvashnin, Tiia Laurila, Michael J. Lawler, Huajun Mai, Vladimir Makhmutov, Roy L. Mauldin III, Ugo Molteni, Leonid Nichman, Wei Nie, Andrea Ojdanic, Antti Onnela, Felix Piel, Lauriane L. J. Quéléver, Matti P. Rissanen, Nina Sarnela, Simon Schallhart, Kamalika Sengupta, Mario Simon, Dominik Stolzenburg, Yuri Stozhkov, Jasmin Tröstl, Yrjö Viisanen, Alexander L. Vogel, Andrea C. Wagner, Mao Xiao, Penglin Ye, Urs Baltensperger, Joachim Curtius, Neil M. Donahue, Richard C. Flagan, Martin Gallagher, Armin Hansel, James N. Smith, António Tomé, Paul M. Winkler, Douglas Worsnop, Mikael Ehn, Mikko Sipilä, Veli-Matti Kerminen, Tuukka Petäjä, and Markku Kulmala
Atmos. Chem. Phys., 17, 15181–15197, https://doi.org/10.5194/acp-17-15181-2017, https://doi.org/10.5194/acp-17-15181-2017, 2017
Michael Bell, Chris Flechard, Yannick Fauvel, Christoph Häni, Jörg Sintermann, Markus Jocher, Harald Menzi, Arjan Hensen, and Albrecht Neftel
Atmos. Meas. Tech., 10, 1875–1892, https://doi.org/10.5194/amt-10-1875-2017, https://doi.org/10.5194/amt-10-1875-2017, 2017
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This study applies horizontal concentration gradient measurements and inverse dispersion modelling to evaluate ammonia emissions from cattle grazing. The results can contribute to an emission factor for cattle grazing, where emissions where found to be towards the lower end of the range found in the limited number of existing studies. The influences of ammonia deposition, uneven urine patch distribution and climate conditions are discussed.
Heidi Hellén, Simon Schallhart, Arnaud P. Praplan, Tuukka Petäjä, and Hannele Hakola
Atmos. Meas. Tech., 10, 281–289, https://doi.org/10.5194/amt-10-281-2017, https://doi.org/10.5194/amt-10-281-2017, 2017
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There is a lack of knowledge of volatile organic acids (VOAs), other than formic and acetic acids in gas phase, and this is at least partly due to the lack of sensitive enough measurement methods. In the present study we developed an in situ GC–MS measurement method for measuring C2–C7 monocarboxylic VOAs at ambient air concentration levels, which we used to measure ambient air concentrations in a boreal forest site. In addition, found mixing ratios were compared with PTR-TOFMS data.
Pekka Rantala, Leena Järvi, Risto Taipale, Terhi K. Laurila, Johanna Patokoski, Maija K. Kajos, Mona Kurppa, Sami Haapanala, Erkki Siivola, Tuukka Petäjä, Taina M. Ruuskanen, and Janne Rinne
Atmos. Chem. Phys., 16, 7981–8007, https://doi.org/10.5194/acp-16-7981-2016, https://doi.org/10.5194/acp-16-7981-2016, 2016
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Fluxes of volatile organic compounds (VOCs) were measured above an urban landscape in Helsinki, northern Europe. We found that traffic was a major source for many oxygenated and aromatic VOCs, whereas isoprene originated mostly from the urban vegetation. Overall, the VOC fluxes were quite small in comparison with the earlier urban VOC flux measurements.
Jörg Sintermann, Klaus Dietrich, Christoph Häni, Michael Bell, Markus Jocher, and Albrecht Neftel
Atmos. Meas. Tech., 9, 2721–2734, https://doi.org/10.5194/amt-9-2721-2016, https://doi.org/10.5194/amt-9-2721-2016, 2016
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We present a DOAS instrument optimised for open-path field measurements of ambient ammonia (NH3) alongside nitrogen oxide (NO) and sulfur dioxide (SO2). We use a temperature-controlled spectrometer, a deuterium light source and a modified optical arrangement. The system was set up in a robust, field-deployable, temperature-regulated housing. For the evaluation of light spectra a new high-pass filter routine based upon robust baseline extraction with local regression was used.
Robert F. Grant, Albrecht Neftel, and Pierluigi Calanca
Biogeosciences, 13, 3549–3571, https://doi.org/10.5194/bg-13-3549-2016, https://doi.org/10.5194/bg-13-3549-2016, 2016
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The magnitude of N2O emissions from managed grasslands depends on weather and on harvesting and fertilizer practices. Modelling provides a means to predict these emissions under diverse weather and management types. In this modelling study, we show that N2O emissions depend on how weather affects temperatures and water contents of surface litter and near-surface soil. N2O emissions modelled from the grassland were increased by suboptimal harvesting practices, fertilizer timing and soil properties.
Simon Schallhart, Pekka Rantala, Eiko Nemitz, Ditte Taipale, Ralf Tillmann, Thomas F. Mentel, Benjamin Loubet, Giacomo Gerosa, Angelo Finco, Janne Rinne, and Taina M. Ruuskanen
Atmos. Chem. Phys., 16, 7171–7194, https://doi.org/10.5194/acp-16-7171-2016, https://doi.org/10.5194/acp-16-7171-2016, 2016
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We present ecosystem exchange fluxes from a mixed oak–hornbeam forest in the Po Valley, Italy. Detectable fluxes were observed for 29 compounds, dominated by isoprene, which comprised over 60 % of the upward flux. Methanol seemed to be deposited to dew, as the deposition happened in the early morning. We estimated that up to 30 % of the upward flux of methyl vinyl ketone and methacrolein originated from atmospheric oxidation of isoprene.
W. Joe F. Acton, Simon Schallhart, Ben Langford, Amy Valach, Pekka Rantala, Silvano Fares, Giulia Carriero, Ralf Tillmann, Sam J. Tomlinson, Ulrike Dragosits, Damiano Gianelle, C. Nicholas Hewitt, and Eiko Nemitz
Atmos. Chem. Phys., 16, 7149–7170, https://doi.org/10.5194/acp-16-7149-2016, https://doi.org/10.5194/acp-16-7149-2016, 2016
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Volatile organic compounds (VOCs) represent a large source of reactive carbon in the atmosphere and hence have a significant impact on air quality. It is therefore important that we can accurately quantify their emission. In this paper we use three methods to determine the fluxes of reactive VOCs from a woodland canopy. We show that two different canopy-scale measurement methods give good agreement, whereas estimates based on leaf-level-based emission underestimate isoprene fluxes.
Raphael Felber, Daniel Bretscher, Andreas Münger, Albrecht Neftel, and Christof Ammann
Biogeosciences, 13, 2959–2969, https://doi.org/10.5194/bg-13-2959-2016, https://doi.org/10.5194/bg-13-2959-2016, 2016
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We compare the carbon budget of a pasture using two different system boundaries: including and excluding grazing cows. We reveal the importance of non-CO2 fluxes as budget components depending on the chosen system boundaries and discuss the effect of their uncertainties. Budget components were directly measured or derived from cow related measured parameters like milk yield. The resulting carbon budgets of both approaches agree within the limits of uncertainty showing a near-neutral behavior.
Almut Arneth, Risto Makkonen, Stefan Olin, Pauli Paasonen, Thomas Holst, Maija K. Kajos, Markku Kulmala, Trofim Maximov, Paul A. Miller, and Guy Schurgers
Atmos. Chem. Phys., 16, 5243–5262, https://doi.org/10.5194/acp-16-5243-2016, https://doi.org/10.5194/acp-16-5243-2016, 2016
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We study the potentially contrasting effects of enhanced ecosystem CO2 release in response to warmer temperatures vs. emissions of biogenic volatile organic compounds and their formation of secondary organic aerosol through a combination of measurements and modelling at a remote location in Eastern Siberia. The study aims to highlight the number of potentially opposing processes and complex interactions between vegetation physiology, soil processes and trace-gas exchanges in the climate system.
R. Hüppi, R. Felber, A. Neftel, J. Six, and J. Leifeld
SOIL, 1, 707–717, https://doi.org/10.5194/soil-1-707-2015, https://doi.org/10.5194/soil-1-707-2015, 2015
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Biochar is considered an opportunity to tackle major environmental issues in agriculture. Adding pyrolised organic residues to soil may sequester carbon, increase yields and reduce nitrous oxide emissions from soil. It is unknown, whether the latter is induced by changes in soil pH. We show that biochar application substantially reduces nitrous oxide emissions from a temperate maize cropping system. However, the reduction was only achieved with biochar but not with liming.
J. Patokoski, T. M. Ruuskanen, M. K. Kajos, R. Taipale, P. Rantala, J. Aalto, T. Ryyppö, T. Nieminen, H. Hakola, and J. Rinne
Atmos. Chem. Phys., 15, 13413–13432, https://doi.org/10.5194/acp-15-13413-2015, https://doi.org/10.5194/acp-15-13413-2015, 2015
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In this study, main source areas for long-lived VOCs at the boreal forest in SMEAR II were determined. Air masses arriving from eastern and western directions were more polluted than those arriving from the northern direction. The biogenic and anthropogenic influences of three different source profiles were determined. The elevated trace gas concentrations from forest fire episodes were observed clearly in the trajectory analysis.
M. K. Kajos, P. Rantala, M. Hill, H. Hellén, J. Aalto, J. Patokoski, R. Taipale, C. C. Hoerger, S. Reimann, T. M. Ruuskanen, J. Rinne, and T. Petäjä
Atmos. Meas. Tech., 8, 4453–4473, https://doi.org/10.5194/amt-8-4453-2015, https://doi.org/10.5194/amt-8-4453-2015, 2015
P. Rantala, J. Aalto, R. Taipale, T. M. Ruuskanen, and J. Rinne
Biogeosciences, 12, 5753–5770, https://doi.org/10.5194/bg-12-5753-2015, https://doi.org/10.5194/bg-12-5753-2015, 2015
G. Wohlfahrt, C. Amelynck, C. Ammann, A. Arneth, I. Bamberger, A. H. Goldstein, L. Gu, A. Guenther, A. Hansel, B. Heinesch, T. Holst, L. Hörtnagl, T. Karl, Q. Laffineur, A. Neftel, K. McKinney, J. W. Munger, S. G. Pallardy, G. W. Schade, R. Seco, and N. Schoon
Atmos. Chem. Phys., 15, 7413–7427, https://doi.org/10.5194/acp-15-7413-2015, https://doi.org/10.5194/acp-15-7413-2015, 2015
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Methanol is the second most abundant volatile organic compound in the troposphere and plays a significant role in atmospheric chemistry. While there is consensus about the dominant role of plants as the major source and the reaction with OH as the major sink, global methanol budgets diverge considerably in terms of source/sink estimates. Here we present micrometeorological methanol flux data from eight sites in order to provide a first cross-site synthesis of the terrestrial methanol exchange.
C. C. Hoerger, A. Claude, C. Plass-Duelmer, S. Reimann, E. Eckart, R. Steinbrecher, J. Aalto, J. Arduini, N. Bonnaire, J. N. Cape, A. Colomb, R. Connolly, J. Diskova, P. Dumitrean, C. Ehlers, V. Gros, H. Hakola, M. Hill, J. R. Hopkins, J. Jäger, R. Junek, M. K. Kajos, D. Klemp, M. Leuchner, A. C. Lewis, N. Locoge, M. Maione, D. Martin, K. Michl, E. Nemitz, S. O'Doherty, P. Pérez Ballesta, T. M. Ruuskanen, S. Sauvage, N. Schmidbauer, T. G. Spain, E. Straube, M. Vana, M. K. Vollmer, R. Wegener, and A. Wenger
Atmos. Meas. Tech., 8, 2715–2736, https://doi.org/10.5194/amt-8-2715-2015, https://doi.org/10.5194/amt-8-2715-2015, 2015
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The performance of 20 European laboratories involved in long-term non-methane hydrocarbon (NMHC) measurements was assessed with respect to ACTRIS and GAW data quality objectives. The participants were asked to measure both a 30-component NMHC mixture in nitrogen and whole air. The NMHCs were analysed either by GC-FID or GC-MS. Most systems performed well for the NMHC in nitrogen, whereas in air more scatter was observed. Reasons for this are explained in the paper.
R. Felber, A. Münger, A. Neftel, and C. Ammann
Biogeosciences, 12, 3925–3940, https://doi.org/10.5194/bg-12-3925-2015, https://doi.org/10.5194/bg-12-3925-2015, 2015
J. Sintermann and A. Neftel
Biogeosciences, 12, 3225–3240, https://doi.org/10.5194/bg-12-3225-2015, https://doi.org/10.5194/bg-12-3225-2015, 2015
S. Smolander, Q. He, D. Mogensen, L. Zhou, J. Bäck, T. Ruuskanen, S. Noe, A. Guenther, H. Aaltonen, M. Kulmala, and M. Boy
Biogeosciences, 11, 5425–5443, https://doi.org/10.5194/bg-11-5425-2014, https://doi.org/10.5194/bg-11-5425-2014, 2014
A. Arneth, S. Olin, R. Makkonen, P. Paasonen, T. Holst, M. Kajos, M. Kulmala, T. Maximov, P. A. Miller, and G. Schurgers
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-14-19149-2014, https://doi.org/10.5194/acpd-14-19149-2014, 2014
Revised manuscript not accepted
L. Hörtnagl, I. Bamberger, M. Graus, T. M. Ruuskanen, R. Schnitzhofer, M. Walser, A. Unterberger, A. Hansel, and G. Wohlfahrt
Atmos. Chem. Phys., 14, 5369–5391, https://doi.org/10.5194/acp-14-5369-2014, https://doi.org/10.5194/acp-14-5369-2014, 2014
A. Virkkula, J. Levula, T. Pohja, P. P. Aalto, P. Keronen, S. Schobesberger, C. B. Clements, L. Pirjola, A.-J. Kieloaho, L. Kulmala, H. Aaltonen, J. Patokoski, J. Pumpanen, J. Rinne, T. Ruuskanen, M. Pihlatie, H. E. Manninen, V. Aaltonen, H. Junninen, T. Petäjä, J. Backman, M. Dal Maso, T. Nieminen, T. Olsson, T. Grönholm, J. Aalto, T. H. Virtanen, M. Kajos, V.-M. Kerminen, D. M. Schultz, J. Kukkonen, M. Sofiev, G. De Leeuw, J. Bäck, P. Hari, and M. Kulmala
Atmos. Chem. Phys., 14, 4473–4502, https://doi.org/10.5194/acp-14-4473-2014, https://doi.org/10.5194/acp-14-4473-2014, 2014
I. Kourtchev, S. J. Fuller, C. Giorio, R. M. Healy, E. Wilson, I. O'Connor, J. C. Wenger, M. McLeod, J. Aalto, T. M. Ruuskanen, W. Maenhaut, R. Jones, D. S. Venables, J. R. Sodeau, M. Kulmala, and M. Kalberer
Atmos. Chem. Phys., 14, 2155–2167, https://doi.org/10.5194/acp-14-2155-2014, https://doi.org/10.5194/acp-14-2155-2014, 2014
T. Yli-Juuti, K. Barsanti, L. Hildebrandt Ruiz, A.-J. Kieloaho, U. Makkonen, T. Petäjä, T. Ruuskanen, M. Kulmala, and I. Riipinen
Atmos. Chem. Phys., 13, 12507–12524, https://doi.org/10.5194/acp-13-12507-2013, https://doi.org/10.5194/acp-13-12507-2013, 2013
S. A. K. Häkkinen, H. E. Manninen, T. Yli-Juuti, J. Merikanto, M. K. Kajos, T. Nieminen, S. D. D'Andrea, A. Asmi, J. R. Pierce, M. Kulmala, and I. Riipinen
Atmos. Chem. Phys., 13, 7665–7682, https://doi.org/10.5194/acp-13-7665-2013, https://doi.org/10.5194/acp-13-7665-2013, 2013
M. K. Kajos, H. Hakola, T. Holst, T. Nieminen, V. Tarvainen, T. Maximov, T. Petäjä, A. Arneth, and J. Rinne
Biogeosciences, 10, 4705–4719, https://doi.org/10.5194/bg-10-4705-2013, https://doi.org/10.5194/bg-10-4705-2013, 2013
E. Z. Nordin, A. C. Eriksson, P. Roldin, P. T. Nilsson, J. E. Carlsson, M. K. Kajos, H. Hellén, C. Wittbom, J. Rissler, J. Löndahl, E. Swietlicki, B. Svenningsson, M. Bohgard, M. Kulmala, M. Hallquist, and J. H. Pagels
Atmos. Chem. Phys., 13, 6101–6116, https://doi.org/10.5194/acp-13-6101-2013, https://doi.org/10.5194/acp-13-6101-2013, 2013
H. Keskinen, A. Virtanen, J. Joutsensaari, G. Tsagkogeorgas, J. Duplissy, S. Schobesberger, M. Gysel, F. Riccobono, J. G. Slowik, F. Bianchi, T. Yli-Juuti, K. Lehtipalo, L. Rondo, M. Breitenlechner, A. Kupc, J. Almeida, A. Amorim, E. M. Dunne, A. J. Downard, S. Ehrhart, A. Franchin, M.K. Kajos, J. Kirkby, A. Kürten, T. Nieminen, V. Makhmutov, S. Mathot, P. Miettinen, A. Onnela, T. Petäjä, A. Praplan, F. D. Santos, S. Schallhart, M. Sipilä, Y. Stozhkov, A. Tomé, P. Vaattovaara, D. Wimmer, A. Prevot, J. Dommen, N. M. Donahue, R.C. Flagan, E. Weingartner, Y. Viisanen, I. Riipinen, A. Hansel, J. Curtius, M. Kulmala, D. R. Worsnop, U. Baltensperger, H. Wex, F. Stratmann, and A. Laaksonen
Atmos. Chem. Phys., 13, 5587–5600, https://doi.org/10.5194/acp-13-5587-2013, https://doi.org/10.5194/acp-13-5587-2013, 2013
R. Seco, J. Peñuelas, I. Filella, J. Llusia, S. Schallhart, A. Metzger, M. Müller, and A. Hansel
Atmos. Chem. Phys., 13, 4291–4306, https://doi.org/10.5194/acp-13-4291-2013, https://doi.org/10.5194/acp-13-4291-2013, 2013
Related subject area
Biogeochemistry: Air - Land Exchange
Atmospheric deposition of reactive nitrogen to a deciduous forest in the southern Appalachian Mountains
Tropical cyclones facilitate recovery of forest leaf area from dry spells in East Asia
Lichen species across Alaska produce highly active and stable ice nucleators
Minor contributions of daytime monoterpenes are major contributors to atmospheric reactivity
Using atmospheric observations to quantify annual biogenic carbon dioxide fluxes on the Alaska North Slope
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part II: Modeling annual budgets
Growth and actual leaf temperature modulate CO2 responsiveness of monoterpene emissions from holm oak in opposite ways
Multi-year observations reveal a larger than expected autumn respiration signal across northeast Eurasia
Reviews and syntheses: VOC emissions from soil cover in boreal and temperate natural ecosystems of the Northern Hemisphere
Internal tree cycling and atmospheric archiving of mercury: examination with concentration and stable isotope analyses
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
Synergy between TROPOMI sun-induced chlorophyll fluorescence and MODIS spectral reflectance for understanding the dynamics of gross primary productivity at integrated carbon observatory system (ICOS) ecosystem flux sites
CO2 and CH4 exchanges between moist moss tundra and atmosphere on Kapp Linné, Svalbard
Recent extreme drought events in the Amazon rainforest: assessment of different precipitation and evapotranspiration datasets and drought indicators
Variability and uncertainty in flux-site-scale net ecosystem exchange simulations based on machine learning and remote sensing: a systematic evaluation
Update of a biogeochemical model with process-based algorithms to predict ammonia volatilization from fertilized cultivated uplands and rice paddy fields
Massive warming-induced carbon loss from subalpine grassland soils in an altitudinal transplantation experiment
Climatic variation drives loss and restructuring of carbon and nitrogen in boreal forest wildfire
Gaps in network infrastructure limit our understanding of biogenic methane emissions for the United States
Changes of the aerodynamic characteristics of a flux site after an extensive windthrow
Carbon sequestration potential of street tree plantings in Helsinki
Technical note: Incorporating expert domain knowledge into causal structure discovery workflows
Sensitivity of biomass burning emissions estimates to land surface information
A convolutional neural network for spatial downscaling of satellite-based solar-induced chlorophyll fluorescence (SIFnet)
Influence of plant ecophysiology on ozone dry deposition: comparing between multiplicative and photosynthesis-based dry deposition schemes and their responses to rising CO2 level
Modeling the interinfluence of fertilizer-induced NH3 emission, nitrogen deposition, and aerosol radiative effects using modified CESM2
Physiological and climate controls on foliar mercury uptake by European tree species
Radiation, soil water content, and temperature effects on carbon cycling in an alpine swamp meadow of the northeastern Qinghai–Tibetan Plateau
Representativeness assessment of the pan-Arctic eddy covariance site network and optimized future enhancements
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part I: Measuring temporal dynamics
Ideas and perspectives: Emerging contours of a dynamic exogenous kerogen cycle
Versatile soil gas concentration and isotope monitoring: optimization and integration of novel soil gas probes with online trace gas detection
On the impact of canopy model complexity on simulated carbon, water, and solar-induced chlorophyll fluorescence fluxes
Mercury accumulation in leaves of different plant types – the significance of tissue age and specific leaf area
Isolation of subpollen particles (SPPs) of birch: SPPs are potential carriers of ice nucleating macromolecules
Choosing an optimal β factor for relaxed eddy accumulation applications across vegetated and non-vegetated surfaces
Bioaerosols in the Amazon rain forest: temporal variations and vertical profiles of Eukarya, Bacteria, and Archaea
Ice nucleation by viruses and their potential for cloud glaciation
Carbon dioxide fluxes and carbon balance of an agricultural grassland in southern Finland
Sun-induced fluorescence and near-infrared reflectance of vegetation track the seasonal dynamics of gross primary production over Africa
Measurement and modelling of the dynamics of NH3 surface–atmosphere exchange over the Amazonian rainforest
Isoprene and monoterpene emissions from alder, aspen and spruce short-rotation forest plantations in the United Kingdom
Winter atmospheric nutrient and pollutant deposition on Western Sayan Mountain lakes (Siberia)
Methane efflux from an American bison herd
Technical note: Inexpensive modification of Exetainers for the reliable storage of trace-level hydrogen and carbon monoxide gas samples
A climate-dependent global model of ammonia emissions from chicken farming
Calculating canopy stomatal conductance from eddy covariance measurements, in light of the energy budget closure problem
Decoupling of a Douglas fir canopy: a look into the subcanopy with continuous vertical temperature profiles
Variations in diurnal and seasonal net ecosystem carbon dioxide exchange in a semiarid sandy grassland ecosystem in China's Horqin Sandy Land
Biogenic volatile organic compound ambient mixing ratios and emission rates in the Alaskan Arctic tundra
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
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Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
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Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Valeria Molinero, Mischa Bonn, Todd L. Sformo, Gary A. Laursen, Janine Fröhlich-Nowoisky, and Konrad Meister
Biogeosciences Discuss., https://doi.org/10.5194/bg-2022-239, https://doi.org/10.5194/bg-2022-239, 2023
Revised manuscript accepted for BG
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Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0 °C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggests that they may have considerable impacts on local atmospheric patterns.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
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Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
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As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
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For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
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We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
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Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
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Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
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Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
EGUsphere, https://doi.org/10.5194/egusphere-2022-640, https://doi.org/10.5194/egusphere-2022-640, 2022
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This study focuses on the relationship between Sun Induced chlorophyll Fluorescence (SIF) and ecosystem gross primary productivity (GPP), across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explained over 80 % of the GPP variability across diverse ecosystems, but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture, and ecophysiological studies.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
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We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
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A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
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The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
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Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
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This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
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To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
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This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
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This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
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We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
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We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
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Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
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Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Junqi Wei, Xiaoyan Li, Lei Liu, Torben Røjle Christensen, Zhiyun Jiang, Yujun Ma, Xiuchen Wu, Hongyun Yao, and Efrén López-Blanco
Biogeosciences, 19, 861–875, https://doi.org/10.5194/bg-19-861-2022, https://doi.org/10.5194/bg-19-861-2022, 2022
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Although water availability has been linked to the response of ecosystem carbon (C) sink–source to climate warming, the mechanisms by which C uptake responds to soil moisture remain unclear. We explored how soil water and other environmental drivers modulate net C uptake in an alpine swamp meadow. Results reveal that nearly saturated soil conditions during warm seasons can help to maintain lower ecosystem respiration and therefore enhance the C sequestration capacity in this alpine swamp meadow.
Martijn M. T. A. Pallandt, Jitendra Kumar, Marguerite Mauritz, Edward A. G. Schuur, Anna-Maria Virkkala, Gerardo Celis, Forrest M. Hoffman, and Mathias Göckede
Biogeosciences, 19, 559–583, https://doi.org/10.5194/bg-19-559-2022, https://doi.org/10.5194/bg-19-559-2022, 2022
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Thawing of Arctic permafrost soils could trigger the release of vast amounts of carbon to the atmosphere, thus enhancing climate change. Our study investigated how well the current network of eddy covariance sites to monitor greenhouse gas exchange at local scales captures pan-Arctic flux patterns. We identified large coverage gaps, e.g., in Siberia, but also demonstrated that a targeted addition of relatively few sites can significantly improve network performance.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, and Christian Brümmer
Biogeosciences, 19, 389–413, https://doi.org/10.5194/bg-19-389-2022, https://doi.org/10.5194/bg-19-389-2022, 2022
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Fluxes of total reactive nitrogen (∑Nr) over a low polluted forest were analyzed with regard to their temporal dynamics. Mostly deposition was observed with median fluxes ranging from −15 to −5 ng N m−2 s−1, corresponding to a range of deposition velocities from 0.2 to 0.5 cm s−1. While seasonally changing contributions of NH3 and NOx to the ∑Nr signal were found, we estimate an annual total N deposition (dry+wet) of 12.2 and 10.9 kg N ha−1 a−1 in the 2 years of observation.
Thomas M. Blattmann
Biogeosciences, 19, 359–373, https://doi.org/10.5194/bg-19-359-2022, https://doi.org/10.5194/bg-19-359-2022, 2022
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This work enunciates the possibility of kerogen oxidation contributing to atmospheric CO2 increase in the wake of glacial episodes. This hypothesis is substantiated by several lines of independent evidence synthesized in this contribution. The author hypothesizes that the deglaciation of kerogen-rich lithologies in western Canada contributed to the characteristic deglacial increase in atmospheric CO2.
Juliana Gil-Loaiza, Joseph R. Roscioli, Joanne H. Shorter, Till H. M. Volkmann, Wei-Ren Ng, Jordan E. Krechmer, and Laura K. Meredith
Biogeosciences, 19, 165–185, https://doi.org/10.5194/bg-19-165-2022, https://doi.org/10.5194/bg-19-165-2022, 2022
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We evaluated a new diffusive soil probe integrated with high-resolution gas analyzers to measure soil gases in real time at a centimeter scale. Using columns with simple silica and soil, we captured changes in carbon dioxide (CO2), volatile organic compounds (VOCs), and nitrous oxide (N2O) with its isotopes to distinguish potential nutrient sources and microbial metabolism. This approach will advance the use of soil gases as important signals to understand and monitor soil fertility and health.
Yujie Wang and Christian Frankenberg
Biogeosciences, 19, 29–45, https://doi.org/10.5194/bg-19-29-2022, https://doi.org/10.5194/bg-19-29-2022, 2022
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Modeling vegetation canopy is important in predicting whether the land remains a carbon sink to mitigate climate change in the near future. Vegetation canopy model complexity, however, impacts the model-predicted carbon and water fluxes as well as canopy fluorescence, even if the same suite of model inputs is used. Given the biases caused by canopy model complexity, we recommend not misusing parameters inverted using different models or assumptions.
Håkan Pleijel, Jenny Klingberg, Michelle Nerentorp, Malin C. Broberg, Brigitte Nyirambangutse, John Munthe, and Göran Wallin
Biogeosciences, 18, 6313–6328, https://doi.org/10.5194/bg-18-6313-2021, https://doi.org/10.5194/bg-18-6313-2021, 2021
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Mercury is a problematic metal in the environment. It is crucial to understand the Hg circulation in ecosystems. We explored the mercury concentration in foliage from a diverse set of plants, locations and sampling periods to study the accumulation of Hg in leaves–needles over time. Mercury was always higher in older tissue: in broadleaved trees, conifers and wheat. Specific leaf area, the leaf area per unit leaf mass, turned out to be critical for Hg accumulation in leaves–needles.
Julia Burkart, Jürgen Gratzl, Teresa M. Seifried, Paul Bieber, and Hinrich Grothe
Biogeosciences, 18, 5751–5765, https://doi.org/10.5194/bg-18-5751-2021, https://doi.org/10.5194/bg-18-5751-2021, 2021
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Extracts of birch pollen grains are known to be ice nucleation active and thus impact cloud formation and climate. In this study we develop an extraction method to separate subpollen particles from ice nucleating macromolecules. Our results thereby illustrate that ice nucleating macromolecules can be washed off the subpollen particles and that the ice activity is linked to the presence of proteins.
Teresa Vogl, Amy Hrdina, and Christoph K. Thomas
Biogeosciences, 18, 5097–5115, https://doi.org/10.5194/bg-18-5097-2021, https://doi.org/10.5194/bg-18-5097-2021, 2021
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The relaxed eddy accumulation technique is a method used for measuring fluxes of chemical species in the atmosphere. It relies on a proportionality factor, β, which can be determined using different methods. Also, different techniques for sampling can be used by only drawing air into the measurement system when vertical wind velocity exceeds a certain threshold. We compare different ways to obtain β and different threshold techniques to direct flux measurements for three different sites.
Maria Prass, Meinrat O. Andreae, Alessandro C. de Araùjo, Paulo Artaxo, Florian Ditas, Wolfgang Elbert, Jan-David Förster, Marco Aurélio Franco, Isabella Hrabe de Angelis, Jürgen Kesselmeier, Thomas Klimach, Leslie Ann Kremper, Eckhard Thines, David Walter, Jens Weber, Bettina Weber, Bernhard M. Fuchs, Ulrich Pöschl, and Christopher Pöhlker
Biogeosciences, 18, 4873–4887, https://doi.org/10.5194/bg-18-4873-2021, https://doi.org/10.5194/bg-18-4873-2021, 2021
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Bioaerosols in the atmosphere over the Amazon rain forest were analyzed by molecular biological staining and microscopy. Eukaryotic, bacterial, and archaeal aerosols were quantified in time series and altitude profiles which exhibited clear differences in number concentrations and vertical distributions. Our results provide insights into the sources and dispersion of different Amazonian bioaerosol types as a basis for a better understanding of biosphere–atmosphere interactions.
Michael P. Adams, Nina S. Atanasova, Svetlana Sofieva, Janne Ravantti, Aino Heikkinen, Zoé Brasseur, Jonathan Duplissy, Dennis H. Bamford, and Benjamin J. Murray
Biogeosciences, 18, 4431–4444, https://doi.org/10.5194/bg-18-4431-2021, https://doi.org/10.5194/bg-18-4431-2021, 2021
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The formation of ice in clouds is critically important for the planet's climate. Hence, we need to know which aerosol types nucleate ice and how effectively they do so. Here we show that virus particles, with a range of architectures, nucleate ice when immersed in supercooled water. However, we also show that they only make a minor contribution to the ice-nucleating particle population in the terrestrial atmosphere, but we cannot rule them out as being important in the marine environment.
Laura Heimsch, Annalea Lohila, Juha-Pekka Tuovinen, Henriikka Vekuri, Jussi Heinonsalo, Olli Nevalainen, Mika Korkiakoski, Jari Liski, Tuomas Laurila, and Liisa Kulmala
Biogeosciences, 18, 3467–3483, https://doi.org/10.5194/bg-18-3467-2021, https://doi.org/10.5194/bg-18-3467-2021, 2021
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CO2 and H2O fluxes were measured at a newly established eddy covariance site in southern Finland for 2 years from 2018 to 2020. This agricultural grassland site focuses on the conversion from intensive towards more sustainable agricultural management. The first summer experienced prolonged dry periods, and notably larger fluxes were observed in the second summer. The field acted as a net carbon sink during both study years.
Anteneh Getachew Mengistu, Gizaw Mengistu Tsidu, Gerbrand Koren, Maurits L. Kooreman, K. Folkert Boersma, Torbern Tagesson, Jonas Ardö, Yann Nouvellon, and Wouter Peters
Biogeosciences, 18, 2843–2857, https://doi.org/10.5194/bg-18-2843-2021, https://doi.org/10.5194/bg-18-2843-2021, 2021
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In this study, we assess the usefulness of Sun-Induced Fluorescence of Terrestrial Ecosystems Retrieval (SIFTER) data from the GOME-2A instrument and near-infrared reflectance of vegetation (NIRv) from MODIS to capture the seasonality and magnitudes of gross primary production (GPP) derived from six eddy-covariance flux towers in Africa in the overlap years between 2007–2014. We also test the robustness of sun-induced fluoresence and NIRv to compare the seasonality of GPP for the major biomes.
Robbie Ramsay, Chiara F. Di Marco, Mathew R. Heal, Matthias Sörgel, Paulo Artaxo, Meinrat O. Andreae, and Eiko Nemitz
Biogeosciences, 18, 2809–2825, https://doi.org/10.5194/bg-18-2809-2021, https://doi.org/10.5194/bg-18-2809-2021, 2021
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The exchange of the gas ammonia between the atmosphere and the surface is an important biogeochemical process, but little is known of this exchange for certain ecosystems, such as the Amazon rainforest. This study took measurements of ammonia exchange over an Amazon rainforest site and subsequently modelled the observed deposition and emission patterns. We observed emissions of ammonia from the rainforest, which can be simulated accurately by using a canopy resistance modelling approach.
Gemma Purser, Julia Drewer, Mathew R. Heal, Robert A. S. Sircus, Lara K. Dunn, and James I. L. Morison
Biogeosciences, 18, 2487–2510, https://doi.org/10.5194/bg-18-2487-2021, https://doi.org/10.5194/bg-18-2487-2021, 2021
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Short-rotation forest plantations could help reduce greenhouse gases but can emit biogenic volatile organic compounds. Emissions were measured at a plantation trial in Scotland. Standardised emissions of isoprene from foliage were higher from hybrid aspen than from Sitka spruce and low from Italian alder. Emissions of total monoterpene were lower. The forest floor was only a small source. Model estimates suggest an SRF expansion of 0.7 Mha could increase total UK emissions between < 1 %–35 %.
Daniel Diaz-de-Quijano, Aleksander Vladimirovich Ageev, Elena Anatolevna Ivanova, and Olesia Valerevna Anishchenko
Biogeosciences, 18, 1601–1618, https://doi.org/10.5194/bg-18-1601-2021, https://doi.org/10.5194/bg-18-1601-2021, 2021
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Winter atmospheric nitrogen (N) and phosphorus (P) depositions were measured for the first time in the Western Sayan Mountains (Siberia). The low and very low atmospheric N and P depositions could be responsible for the observed lake phytoplankton N–P colimitation. We hypothesize that slight imbalances in the nutrient deposition, as expected in the context of global change (climate, forest fires and anthropogenic nitrogen emissions), could have important effects on the ecology of these lakes.
Paul C. Stoy, Adam A. Cook, John E. Dore, Natascha Kljun, William Kleindl, E. N. Jack Brookshire, and Tobias Gerken
Biogeosciences, 18, 961–975, https://doi.org/10.5194/bg-18-961-2021, https://doi.org/10.5194/bg-18-961-2021, 2021
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The reintroduction of American bison creates multiple environmental benefits. Ruminants like bison also emit methane – a potent greenhouse gas – to the atmosphere, which has not been measured to date in a field setting. We measured methane efflux from an American bison herd during winter using eddy covariance. Automated cameras were used to approximate their location to calculate per-animal flux. From the measurements, bison do not emit more methane than the cattle they often replace.
Philipp A. Nauer, Eleonora Chiri, Thanavit Jirapanjawat, Chris Greening, and Perran L. M. Cook
Biogeosciences, 18, 729–737, https://doi.org/10.5194/bg-18-729-2021, https://doi.org/10.5194/bg-18-729-2021, 2021
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Hydrogen (H2) and carbon monoxide (CO) are atmospheric trace gases cycled via microbial metabolisms. We observed strong H2 and CO contamination from rubber septa used to seal common gas sample storage vials. Here we propose a simple and inexpensive modification of such vials to allow reliable storage of H2, CO and methane trace-gas samples for timescales of weeks to months, thus enabling extensive field campaigns to investigate H2 and CO biogeochemistry in remote areas.
Jize Jiang, David S. Stevenson, Aimable Uwizeye, Giuseppe Tempio, and Mark A. Sutton
Biogeosciences, 18, 135–158, https://doi.org/10.5194/bg-18-135-2021, https://doi.org/10.5194/bg-18-135-2021, 2021
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Ammonia is a key water and air pollutant and impacts human health and climate change. Ammonia emissions mainly originate from agriculture. We find that chicken agriculture contributes to large ammonia emissions, especially in hot and wet regions. These emissions can be greatly affected by the local environment, i.e. temperature and humidity, and also by human management. We develop a model that suggests ammonia emissions from chicken farming are likely to increase under a warming climate.
Richard Wehr and Scott R. Saleska
Biogeosciences, 18, 13–24, https://doi.org/10.5194/bg-18-13-2021, https://doi.org/10.5194/bg-18-13-2021, 2021
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Water and carbon exchange between plants and the atmosphere is governed by stomata: adjustable pores in the surfaces of leaves. The combined gas conductance of all the stomata in a canopy has long been estimated using an equation that is shown here to be systematically incorrect because it relies on measurements that are generally inadequate. An alternative approach is shown to be more accurate in all probable scenarios and to imply different responses of stomatal conductance to the environment.
Bart Schilperoort, Miriam Coenders-Gerrits, César Jiménez Rodríguez, Christiaan van der Tol, Bas van de Wiel, and Hubert Savenije
Biogeosciences, 17, 6423–6439, https://doi.org/10.5194/bg-17-6423-2020, https://doi.org/10.5194/bg-17-6423-2020, 2020
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With distributed temperature sensing (DTS) we measured a vertical temperature profile in a forest, from the forest floor to above the treetops. Using this temperature profile we can see which parts of the forest canopy are colder (thus more dense) or warmer (and less dense) and study the effect this has on the suppression of turbulent mixing. This can be used to improve our knowledge of the interaction between the atmosphere and forests and improve carbon dioxide flux measurements over forests.
Yayi Niu, Yuqiang Li, Hanbo Yun, Xuyang Wang, Xiangwen Gong, Yulong Duan, and Jing Liu
Biogeosciences, 17, 6309–6326, https://doi.org/10.5194/bg-17-6309-2020, https://doi.org/10.5194/bg-17-6309-2020, 2020
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We report the results from continuous year-round CO2 observations from a sandy grassland in the Horqin Sandy Land using the eddy covariance technique. To quantify the diurnal, seasonal, and annual variation in net ecosystem CO2 exchange, gross primary productivity, and ecosystem respiration and to identify the different scales of environmental factors and the underlying mechanisms, we also explored how the annual precipitation affects the net ecosystem CO2 exchange and its components.
Hélène Angot, Katelyn McErlean, Lu Hu, Dylan B. Millet, Jacques Hueber, Kaixin Cui, Jacob Moss, Catherine Wielgasz, Tyler Milligan, Damien Ketcherside, M. Syndonia Bret-Harte, and Detlev Helmig
Biogeosciences, 17, 6219–6236, https://doi.org/10.5194/bg-17-6219-2020, https://doi.org/10.5194/bg-17-6219-2020, 2020
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We report biogenic volatile organic compounds (BVOCs) ambient levels and emission rates from key vegetation species in the Alaskan arctic tundra, providing a new data set to further constrain isoprene chemistry under low NOx conditions in models. We add to the growing body of evidence that climate-induced changes in the vegetation composition will significantly affect the BVOC emission potential of the tundra, with implications for atmospheric oxidation processes and climate feedbacks.
Cited articles
Almeida, J., Schobesberger, S., Kürten, A., Ortega, I. K., Kupiainen-Määttä, O., Praplan, A. P., Adamov, A., Amorim, A., Bianchi, F., Breitenlechner, M., David, A., Dommen, J., Donahue, N. M., Downard, A., Dunne, E., Duplissy, J., Ehrhart, S., Flagan, R. C., Franchin, A., Guida, R., Hakala, J., Hansel, A., Heinritzi, M., Henschel, H., Jokinen, T., Junninen, H., Kajos, M., Kangasluoma, J., Keskinen, H., Kupc, A., Kurtén, T., Kvashin, A. N., Laaksonen, A., Lehtipalo, K., Leiminger, M., Leppä, J., Loukonen, V., Makhmutov, V., Mathot, S., McGrath, M. J., Nieminen, T., Olenius, T., Onnela, A., Petäjä, T., Riccobono, F., Riipinen, I., Rissanen, M., Rondo, L., Ruuskanen, T., Santos, F. D., Sarnela, N., Schallhart, S., Schnitzhofer, R., Seinfeld, J. H., Simon, M., Sipilä, M., Stozhkov, Y., Stratmann, F., Tomé, A., Tröstl, J., Tsagkogeorgas, G., Vaattovaara, P., Viisanen, Y., Virtanen, A., Vrtala, A., Wagner, P. E., Weingartner, E., Wex, H., Williamson, C., Wimmer, D., Ye, P., Yli-Juuti, T., Carslaw, K. S., Kulmala, M., Curtius, J., Baltensperger, U., Worsnop, D. R., Vehkamäki, H., and Kirkby, J.: Molecular understanding of sulphuric acid–amine particle nucleation in the atmosphere, Nature, 502, 359–363, https://doi.org/10.1038/nature12663, 2013.
Andreae, M. O.: The aerosol nucleation puzzle, Science, 339, 911–912, 2013.
Ansaldi, M., Théraulaz, L., Baraquet, C., Panis, G., and Méjean, V.: Aerobic TMAO respiration in Escherichia coli, Mol. Microbiol., 66, 484–494, https://doi.org/10.1111/j.1365-2958.2007.05936.x, 2007.
Al-Waiz, M., Mitchell, S. C., Idle, J. R., and Smith, R. L.: The relative importance of N-oxidation and N-demethylation in the metabolism of trimethylamine in man, Toxicology, 43, 117–121, 1987.
Bain, M. A., Fornasini, G., and Evans, A. M.: Trimethylamine: metabolic, pharmacokinetic and safety aspects, Curr. Drug Metab., 227–240, 2005.
Baker, J. R. and Chaykin, S.: The biosynthesis of trimethylamine-N-oxide, J. Biol. Chem., 237, 1309–1313, 1962.
Baker, J. R., Chaykin, S., and Struempler, A.: A comparative study of trimethylamine-N-oxide biosynthesis, Biochim. Biophys. Acta, 71, 58–64, 1963.
Baraquet, C., Theraulaz, L., Guiral, M., Lafitte, D., Mejean, V., and Jourlin-Castelli, C.: TorT, a member of a new periplasmic binding protein family, triggers induction of the Tor respiratory system upon trimethylamine N-oxide electron-acceptor binding in Escherichia coli, J. Biol. Chem., 281, 38189–38199, https://doi.org/10.1074/jbc.M604321200, 2006.
Barrett, E. L. and Kwan, H. S.: Bacterial reduction of trimethylamine oxide, Annu. Rev. Microbiol., 39, 131–149, 1985.
Barsanti, K. C., McMurry, P. H., and Smith, J. N.: The potential contribution of organic salts to new particle growth, Atmos. Chem. Phys., 9, 2949–2957, https://doi.org/10.5194/acp-9-2949-2009, 2009.
Bennett, B. J., Vallim, T. Q. D. A., Wang, Z., Shih, D. M., Meng, Y., Gregory, J., Allayee, H., Lee, R., Graham, M., Crooke, R., Edwards, P. A., Hazen, S. L., and Lusis, A. J.: Trimethylamine-N-oxide, a metabolite associated with atherosclerosis, exhibits complex genetic and dietary regulation, Cell Metab., 17, 49–60, https://doi.org/10.1016/j.cmet.2012.12.011, 2013.
Bennion, B. J. and Daggett, V.: Counteraction of urea-induced protein denaturation by trimethylamine N-oxide: a chemical chaperone at atomic resolution, P. Natl. Acad. Sci. USA, 101, 6433–6438, https://doi.org/10.1073/pnas.0308633101, 2004.
Blanes-Vidal, V., Hansen, M., Adamsen, A., Feilberg, A., Petersen, S., and Jensen, B.: Characterization of odor released during handling of swine slurry: Part I. Relationship between odorants and perceived odor concentrations, Atmos. Environ., 43, 2997–3005, https://doi.org/10.1016/j.atmosenv.2008.10.016, 2009.
Boy, M., Kulmala, M., Ruuskanen, T. M., Pihlatie, M., Reissell, A., Aalto, P. P., Keronen, P., Dal Maso, M., Hellen, H., Hakola, H., Jansson, R., Hanke, M., and Arnold, F.: Sulphuric acid closure and contribution to nucleation mode particle growth, Atmos. Chem. Phys., 5, 863–878, https://doi.org/10.5194/acp-5-863-2005, 2005.
Callaway, T. R., Carr, M. A., Edrington, T. S., Anderson, R. C., and Nisbet, D. J.: Diet, Escherichia coli O157 : H7, and cattle: a review after 10 years, Curr. Issues Mol. Biol., 11, 67–79, 2009.
Cashman, J., Camp, K., Fakharzadeh, S., Fennessey, P., Hines, R., Mamer, O., Mitchell, S., Preti, G., Schlenk, D., Smith, R., Tjoa, S., Williams, D., and Yannicelli, S.: Biochemical and clinical aspects of the human flavin-containing monooxygenase form 3 (FMO3) related to trimethylaminuria, Curr. Drug Metab., 4, 151–170, https://doi.org/10.2174/1389200033489505, 2003.
Chen, Y., Patel, N. A., Crombie, A., Scrivens, J. H., and Murrell, J. C.: Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase, P. Natl. Acad. Sci. USA, 108, 17791–17796, https://doi.org/10.1073/pnas.1112928108, 2011.
Colby, J. and Zatman, L. J.: Trimethylamine metabolism in obligate and facultative methylotrophs, Biochem. J., 132, 101–112, 1973.
Colby, J., Dalton, H., and Whittenbury, R.: Biological and biochemical aspects of microbial-growth on C1 compounds, Annu. Rev. Microbiol., 33, 481–517, https://doi.org/10.1146/annurev.mi.33.100179.002405, 1979.
Craciun, S. and Balskus, E. P.: Microbial conversion of choline to trimethylamine requires a glycyl radical enzyme, P. Natl. Acad. Sci. USA, 109, 21307–21312, https://doi.org/10.1073/pnas.1215689109, 2012.
Dacosta, K., Vrbanac, J., and Zeisel, S.: The measurement of dimethylamine, trimethylamine, and trimethylamine N-oxide using capillary gas-chromatography mass-spectrometry, Anal. Biochem., 187, 234–239, https://doi.org/10.1016/0003-2697(90)90449-J, 1990.
Dal Maso, M., Sogacheva, L., Aalto, P. P., Riipinen, I., Komppula, M., Tunved, P., Korhonen, L., Suur-Uski, V., Hirsikko, A., Kurtén, T., Kerminen, V.-M., Lihavainen, H., Viisanen, Y., Hansson, H.-C., and Kulmala, M.: Aerosol size distribution measurements at four Nordic field stations: identification, analysis and trajectory analysis of new particle formation bursts, Tellus B, 59, 350–361, https://doi.org/10.1111/j.1600-0889.2007.00267.x, 2007.
Davies, W. L.: 124. The metabolism of betaine and allied tertiary nitrogenous bases in the ruminant, J. Dairy Res., 7, 14–24, 1936.
Dawson, M. L., Perraud, V., Gomez, A., Arquero, K. D., Ezell, M. J., and Finlayson-Pitts, B. J.: Measurement of gas-phase ammonia and amines in air by collection onto an ion exchange resin and analysis by ion chromatography, Atmos. Meas. Tech. Discuss., 7, 1573–1602, https://doi.org/10.5194/amtd-7-1573-2014, 2014.
Denmead, O. T., Simpson, J. R., and Freney, J. R.: Ammonia flux into atmosphere from a grazed pasture, Science, 185, 609–610, 1974.
Dobbelaar, P., Mottram, T., Nyabadza, C., Hobbs, P., Elliott-Martin, R., and Schukken, Y.: Detection of ketosis in dairy cows by analysis of exhaled breath, Vet. Quart., 18, 151–152, https://doi.org/10.1080/01652176.1996.9694638, 1996.
Eddy, B.: Bacterial degradation of choline, Nature, 171, 573–574, https://doi.org/10.1038/171573b0, 1953.
Eisele, F. L. and Tanner, D. J.: Measurement of the gas phase concentration of H2SO4 and methane sulfonic acid and estimates of H2SO4 production and loss in the atmosphere, J. Geophys. Res., 98, 9001, https://doi.org/10.1029/93JD00031, 1993.
Elliott-Martin, R. J., Mottram, T. T., Gardner, J. W., Hobbs, P. J., and Bartlett, P. N.: Preliminary investigation of breath sampling as a monitor of health in dairy cattle, J. Agr. Eng. Res., 67, 267–275, 1997.
FAO: FAO Statistical Yearbook 2012 – Europe and Central Asia, Food and Agriculture, Rome, Italy, 2013.
Feilberg, A., Liu, D., Adamsen, A. P. S., Hansen, M. J., and Jonassen, K. E. N.: Odorant emissions from intensive pig production measured by online proton-transfer-reaction mass spectrometry, Environ. Sci. Technol., 44, 5894–5900, https://doi.org/10.1021/es100483s, 2010.
Ferguson, T., Soares, J. A., Lienard, T., Gottschalk, G., and Krzycki, J. A.: RamA, a protein required for reductive activation of corrinoid-dependent methylamine methyltransferase reactions in methanogenic archaea, J. Biol. Chem., 284, 2285–2295, https://doi.org/10.1074/jbc.M807392200, 2008.
Filipy, J., Rumburg, B., Mount, G., Westberg, H., and Lamb, B.: Identification and quantification of volatile organic compounds from a dairy, Atmos. Environ., 40, 1480–1494, https://doi.org/10.1016/j.atmosenv.2005.10.048, 2006.
Finlayson-Pitts, B. J. and Pitts, J. N.: Chemistry of the Upper and Lower Atmosphere Theory, Experiments, and Applications, Academic Press, San Diego, available at: http://site.ebrary.com/id/10206472, 2000.
Flesch, T. K., Wilson, J. D., Harper, L. A., Crenna, B. P., and Sharpe, R. R.: Deducing ground-to-air emissions from observed trace gas concentrations: A field trial. J. Appl. Meteorol., 3, 487–502, 2004.
Fremaux, B., Prigent-Combaret, C., and Vernozy-Rozand, C.: Long-term survival of Shiga toxin-producing Escherichia coli in cattle effluents and environment: an updated review, Vet. Microbiol., 132, 1–18, https://doi.org/10.1016/j.vetmic.2008.05.015, 2008.
Ge, X., Wexler, A. S., and Clegg, S. L.: Atmospheric amines – Part I. A review, Atmos. Environ., 45, 524–546, https://doi.org/10.1016/j.atmosenv.2010.10.012, 2011.
Gon, S.: Electron transfer and binding of the c-type cytochrome TorC to the trimethylamine N-oxide reductase in Escherichia coli, J. Biol. Chem., 276, 11545–11551, https://doi.org/10.1074/jbc.M008875200, 2000.
Graus, M., Müller, M., and Hansel, A.: High resolution PTR-TOF: quantification and formula confirmation of {VOC} in real time, J. Am. Soc. Mass Spectr., 21, 1037–1044, https://doi.org/10.1016/j.jasms.2010.02.006, 2010.
Grönberg, L., Lövkvist, P., and Jönsson, J..: Determination of aliphatic amines in air by membrane enrichment directly coupled to a gas chromatograph, Chromatographia, 33, 77–82, https://doi.org/10.1007/BF02276856, 1992.
Guest, I. and Varma, D. R.: Teratogenic and macromolecular synthesis inhibitory effects of trimethylamine on mouse embryos in culture, J. Toxicol. Env. Health, 36, 27–41, https://doi.org/10.1080/15287399209531621, 1992.
Gut, I. and Conney, A. H.: Trimethylamine N-oxygenation and N-demethylation in rat liver microsomes, Biochem. Pharmacol., 46, 239–244, 1993.
Hanajima, D., Fukumoto, Y., Yasuda, T., Suzuki, K., Maeda, K., and Morioka, R.: Bacterial community dynamics in aerated cow manure slurry at different aeration intensities: bacterial dynamics in aerated cow slurry, J. Appl. Microbiol., 111, 1416–1425, https://doi.org/10.1111/j.1365-2672.2011.05151.x, 2011.
Ho, K.-L., Chung, Y.-C., Lin, Y.-H., and Tseng, C.-P.: Biofiltration of trimethylamine, dimethylamine, and methylamine by immobilized Paracoccus sp. CP2 and Arthrobacter sp. CP1, Chemosphere, 72, 250–256, https://doi.org/10.1016/j.chemosphere.2008.01.044, 2008.
Hutchinson, G. L., Mosier, A. R., and Andre, C. E.: Ammonia and amine emissions from a large cattle feedlot, J. Environ. Qual., 11, 288–293, 1982.
IPCC: Climate Change 2013: The Physical Science Basis, Contribution of Working Group I to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change, Cambridge University Press, New York, available at: https://www.ipcc.ch/report/ar5/wg1/#.UwOFgHmKjbI, 2013.
Jang, M.-H., Basran, J., Scrutton, N. S., and Hille, R.: The reaction of trimethylamine dehydrogenase with trimethylamine, J. Biol. Chem., 274, 13147–13154, 1999.
Johnson, D. W.: A flow injection electrospray ionization tandem mass spectrometric method for the simultaneous measurement of trimethylamine and trimethylamine N-oxide in urine, J. Mass Spectrom., 43, 495–499, https://doi.org/10.1002/jms.1339, 2008.
Jordan, A., Haidacher, S., Hanel, G., Hartungen, E., Märk, L., Seehauser, H., Schottkowsky, R., Sulzer, P., and Märk, T. D.: A high resolution and high sensitivity proton-transfer-reaction time-of-flight mass spectrometer (PTR-TOF-MS), Int. J. Mass Spectrom., 286, 122–128, https://doi.org/10.1016/j.ijms.2009.07.005, 2009.
Kallinger, G. and Niessner, R.: Laboratory investigation of annular denuders as sampling system for the determination of aliphatic primary and secondary amines in stack gas, Mikrochim. Acta, 130, 309–316, https://doi.org/10.1007/BF01242921, 1999.
Kieloaho, A.-J., Hellén, H., Hakola, H., Manninen, H. E., Nieminen, T., Kulmala, M., and Pihlatie, M.: Gas-phase alkylamines in a boreal Scots pine forest air, Atmos. Environ., 80, 369–377, https://doi.org/10.1016/j.atmosenv.2013.08.019, 2013.
Kim, S.-G., Bae, H.-S., and Lee, S.-T.: A novel denitrifying bacterial isolate that degrades trimethylamine both aerobically and anaerobically via two different pathways, Arch. Microbiol., 176, 271–277, https://doi.org/10.1007/s002030100319, 2001.
Kuhn, U., Sintermann, J., Spirig, C., Jocher, M., Ammann, C., and Neftel, A.: Basic biogenic aerosol precursors: agricultural source attribution of volatile amines revised, Geophys. Res. Lett., 38, 1–7, https://doi.org/10.1029/2011GL047958, 2011.
Kulmala, M., Petäjä, T., Nieminen, T., Sipilä, M., Manninen, H. E., Lehtipalo, K., Dal Maso, M., Aalto, P. P., Junninen, H., Paasonen, P., Riipinen, I., Lehtinen, K. E. J., Laaksonen, A., and Kerminen, V.-M.: Measurement of the nucleation of atmospheric aerosol particles, Nat. Protoc., 7, 1651–1667, https://doi.org/10.1038/nprot.2012.091, 2012.
Kulmala, M., Kontkanen, J., Junninen, H., Lehtipalo, K., Manninen, H. E., Nieminen, T., Petaja, T., Sipila, M., Schobesberger, S., Rantala, P., Franchin, A., Jokinen, T., Jarvinen, E., Aijala, M., Kangasluoma, J., Hakala, J., Aalto, P. P., Paasonen, P., Mikkila, J., Vanhanen, J., Aalto, J., Hakola, H., Makkonen, U., Ruuskanen, T., Mauldin, R. L., Duplissy, J., Vehkamaki, H., Back, J., Kortelainen, A., Riipinen, I., Kurten, T., Johnston, M. V., Smith, J. N., Ehn, M., Mentel, T. F., Lehtinen, K. E. J., Laaksonen, A., Kerminen, V.-M., and Worsnop, D. R.: Direct observations of atmospheric aerosol nucleation, Science, 339, 943–946, https://doi.org/10.1126/science.1227385, 2013.
Kurtén, T., Loukonen, V., Vehkamäki, H., and Kulmala, M.: Amines are likely to enhance neutral and ion-induced sulfuric acid-water nucleation in the atmosphere more effectively than ammonia, Atmos. Chem. Phys., 8, 4095–4103, https://doi.org/10.5194/acp-8-4095-2008, 2008.
Kuwata, K., Akiyama, E., Yamazaki, Y., Yamasaki, H., and Kuge, Y.: Trace determination of low molecular weight aliphatic amines in air by gas chromatograph, Anal. Chem., 55, 2199–2201, 1983.
Lammel, G., Schneider, F., Brüggemann, E., Gnauk, T., Röhrl, A., and Wieser, P.: Aerosols emitted from a livestock farm in Southern Germany, Water Air Soil Poll., 154, 313–330, https://doi.org/10.1023/B:WATE.0000022962.65942.4b, 2004.
Laubach, J., Taghizadeh-Toosi, A., Gibbs, S. J., Sherlock, R. R., Kelliher, F. M., and Grover, S. P. P.: Ammonia emissions from cattle urine and dung excreted on pasture, Biogeosciences, 10, 327–338, https://doi.org/10.5194/bg-10-327-2013, 2013.
Lee, S.-K., Kim, D.-H., Jin, C.-B., and Yoo, H.-H.: Determination of urinary trimethylamine and trimethylamine N-oxide by liquid chromatography-tandem mass spectrometry using mixed-mode stationary phases, B. Korean Chem. Soc., 31, 483–486, https://doi.org/10.5012/bkcs.2010.31.02.483, 2010.
Lohmann, U. and Feichter, J.: Global indirect aerosol effects: a review, Atmos. Chem. Phys., 5, 715–737, https://doi.org/10.5194/acp-5-715-2005, 2005.
Loukonen, V., Kurtén, T., Ortega, I. K., Vehkamäki, H., Pádua, A. A. H., Sellegri, K., and Kulmala, M.: Enhancing effect of dimethylamine in sulfuric acid nucleation in the presence of water – a computational study, Atmos. Chem. Phys., 10, 4961–4974, https://doi.org/10.5194/acp-10-4961-2010, 2010.
Martin, C., Koolaard, J., Rochette, Y., Clark, H., Jouany, J. P., and Pinares-Patiño, C. S.: Effect of release rate of the SF6 tracer on methane emission estimates based on ruminal and breath gas samples, Animal, 6, 518–525, https://doi.org/10.1017/S175173111100156X, 2012.
Meijer, A. J., Lamers, W. H., and Chamuleau, R.: Nitrogen metabolism and ornithine cycle function, Physiol. Rev., 70, 701–748, 1990.
Mitchell, A., Chappell, A., and Knox, K.: Metabolism of betaine in the ruminant, J. Anim. Sci., 49, 764–774, 1979.
Murphy, S. M., Sorooshian, A., Kroll, J. H., Ng, N. L., Chhabra, P., Tong, C., Surratt, J. D., Knipping, E., Flagan, R. C., and Seinfeld, J. H.: Secondary aerosol formation from atmospheric reactions of aliphatic amines, Atmos. Chem. Phys., 7, 2313–2337, https://doi.org/10.5194/acp-7-2313-2007, 2007.
Neill, A., Grime, D., and Dawson, R.: Conversion of choline methyl-groups through trimethylamine into methane in rumen, Biochem. J., 170, 529–535, 1978.
Ngwabie, N. M., Schade, G. W., Custer, T. G., Linke, S., and Hinz, T.: Abundances and flux estimates of volatile organic compounds from a dairy cowshed in Germany, J. Environ. Qual., 37, 565–573, https://doi.org/10.2134/jeq2006.0417, 2008.
Norris, E. and Benoit, G.: Studies on trimethylamine oxide .3. Trimethylamine oxide excretion by the rat, J. Biol. Chem., 158, 443–448, 1945.
Paasonen, P., Olenius, T., Kupiainen, O., Kurtén, T., Petäjä, T., Birmili, W., Hamed, A., Hu, M., Huey, L. G., Plass-Duelmer, C., Smith, J. N., Wiedensohler, A., Loukonen, V., McGrath, M. J., Ortega, I. K., Laaksonen, A., Vehkamäki, H., Kerminen, V.-M., and Kulmala, M.: On the formation of sulphuric acid – amine clusters in varying atmospheric conditions and its influence on atmospheric new particle formation, Atmos. Chem. Phys., 12, 9113–9133, https://doi.org/10.5194/acp-12-9113-2012, 2012.
Padmanabha, J., Liu, J., Kurekci, C., Denman, S. E., and McSweeney, C. S.: A methylotrophic methanogen isolate from the thermoplasmatales affiliated RCC clade may provide insight into the role of this group in the rumen, Adv. Anim. Biosci., 4, 259, https://doi.org/10.1017/S2040470013000095, 2013.
Pape, L., Ammann, C., Nyfeler-Brunner, A., Spirig, C., Hens, K., and Meixner, F. X.: An automated dynamic chamber system for surface exchange measurement of non-reactive and reactive trace gases of grassland ecosystems, Biogeosciences, 6, 405–429, https://doi.org/10.5194/bg-6-405-2009, 2009.
Patterson, J. A. and Hespell, R. B.: Trimethylamine and methylamine as growth substrates for rumen bacteria and Methanosarcina barkeri, Curr. Microbiol., 3, 79–83, 1979.
Petäjä, T., Mauldin, III, R. L., Kosciuch, E., McGrath, J., Nieminen, T., Paasonen, P., Boy, M., Adamov, A., Kotiaho, T., and Kulmala, M.: Sulfuric acid and OH concentrations in a boreal forest site, Atmos. Chem. Phys., 9, 7435–7448, https://doi.org/10.5194/acp-9-7435-2009, 2009.
Pinotti, L., Baldi, A., and Dell'Orto, V.: Comparative mammalian choline metabolism with emphasis on the high-yielding dairy cow, Nutr. Res. Rev., 15, 315–331, https://doi.org/10.1079/NRR200247, 2002.
Pope, C. A., Burnett, R. T., Thun, M. J., Calle, E. E., Krewski, D., Ito, K., and Thurston, G. D.: Lung cancer, cardiopulmonary mortality, and long-term exposure to fine particulate air pollution, JAMA-J. Am. Med. Assoc., 287, 1132–1141, 2002.
Rappert, S. and Müller, R.: Microbial degradation of selected odorous substances, Waste Manage., 25, 940–954, https://doi.org/10.1016/j.wasman.2005.07.015, 2005.
Russell, J. B. and Wallace, R. J.: Energy-yielding and energy-consuming reactions, in: The Rumen Microbial Ecosystem, Blackie Academic & Professional, London, New York, 246–282, 1997.
Samerotte, A. L., Drazen, J. C., Brand, G. L., Seibel, B. A., and Yancey, P. H.: Correlation of trimethylamine oxide and habitat depth within and among species of teleost fish: an analysis of causation, Physiol. Biochem. Zool., 80, 197–208, https://doi.org/10.1086/510566, 2007.
Sarma, R. and Paul, S.: Exploring the molecular mechanism of trimethylamine-N-oxide's ability to counteract the protein denaturing effects of urea, J. Phys. Chem. B, 117, 5691–5704, https://doi.org/10.1021/jp401750v, 2013.
Schade, G. W. and Crutzen, P. J.: Emission of aliphatic amines from animal husbandry and their reactions – potential source of N2O and HCN, J. Atmos. Chem., 22, 319–346, 1995.
Schade, G. W. and Ngwabie, N. M.: Emissionsmessungen von Volatilen Organischen Komponenten (VOK) aus der Tierhaltung, Tech. Rep. BLE-Projektnummer 514-33.26/04HS006, Institut für Umweltphysik der Universität Bremen, Bremen, Germany, 2005.
Schneider, F., Mahmoud-Yasin, N., and Onyeneke-Edwards, H.: Application of wide range aerosol spectrometer to specify particulate emissions from animal husbandry from 5 nano meter to 20 micrometer, in: Agricultural and Biosystems Engineering for a Sustainable World, International Conference on Agricultural Engineering, Greece, 23–25 June, 2008.
Seinfeld, J. H. and Pandis, S. N.: Atmospheric Chemistry and Physics: from Air Pollution to Climate Change, 2nd edn., John Wiley & Sons, Inc., Hoboken, New Jersey, 2006.
Sintermann, J., Spirig, C., Jordan, A., Kuhn, U., Ammann, C., and Neftel, A.: Eddy covariance flux measurements of ammonia by high temperature chemical ionisation mass spectrometry, Atmos. Meas. Tech., 4, 599–616, https://doi.org/10.5194/amt-4-599-2011, 2011.
Spinhirne, J. P., Koziel, J. A., and Chirase, N. K.: A device for non-invasive on-site sampling of cattle breath with solid-phase microextraction, Biosyst. Eng., 84, 239–246, https://doi.org/10.1016/S1537-5110(02)00240-4, 2003.
Suwa, A.: Research into the organ extraction of selachie. II Announcement muscle extracts from dogfish sharks from which trimethylaminooxyd is obtained, Arch. Gesamte Physiol., 129, 231–239, 1909.
Taipale, R., Ruuskanen, T. M., Rinne, J., Kajos, M. K., Hakola, H., Pohja, T., and Kulmala, M.: Technical Note: Quantitative long-term measurements of VOC concentrations by PTR-MS – measurement, calibration, and volume mixing ratio calculation methods, Atmos. Chem. Phys., 8, 6681–6698, https://doi.org/10.5194/acp-8-6681-2008, 2008.
Trabue, S., Scoggin, K., McConnell, L., Maghirang, R., Razote, E., and Hatfield, J.: Identifying and tracking key odorants from cattle feedlots, Atmos. Environ., 45, 4243–4251, https://doi.org/10.1016/j.atmosenv.2011.04.081, 2011.
Turner, C., Knobloch, H., Richards, J., Richards, P., Mottram, T. T., Marlin, D., and Chambers, M. A.: Development of a device for sampling cattle breath, Biosyst. Eng., 112, 75–81, https://doi.org/10.1016/j.biosystemseng.2012.03.001, 2012.
Twigg, M. M., House, E., Thomas, R., Whitehead, J., Phillips, G. J., Famulari, D., Fowler, D., Gallagher, M. W., Cape, J. N., Sutton, M. A., and Nemitz, E.: Surface/atmosphere exchange and chemical interactions of reactive nitrogen compounds above a manured grassland, Agr. Forest Meteorol., 151, 1488–1503, https://doi.org/10.1016/j.agrformet.2011.06.005, 2011.
Wallace, R. J., Onodera, R., and Cotta, M. A.: Metabolism of nitrogen-containing compounds, in: The Rumen Microbial Ecosystem, Blackie Academic & Professional, London, New York, 283–328, 1997.
Walt, v. d. J. G.: Nitrogen-metabolism of the ruminant liver, Aust. J. Agr. Res., 44, 381–403, 1993.
Wang, Z., Klipfell, E., Bennett, B. J., Koeth, R., Levison, B. S., DuGar, B., Feldstein, A. E., Britt, E. B., Fu, X., Chung, Y.-M., Wu, Y., Schauer, P., Smith, J. D., Allayee, H., Tang, W. H. W., DiDonato, J. A., Lusis, A. J., and Hazen, S. L.: Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease, Nature, 472, 57–63, https://doi.org/10.1038/nature09922, 2011.
Whitehead, J. D., Twigg, M., Famulari, D., Nemitz, E., Sutton, M. A., Gallagher, M. W., and Fowler, D.: Evaluation of laser absorption spectroscopic techniques for eddy covariance flux measurements of ammonia, Environ. Sci. Technol., 42, 2041–2046, https://doi.org/10.1021/es071596u, 2008.
Yang, C.-F., Wang, C.-C., and Tseng, C.-H.: Methylamine removal using mixed bacterial strains in a continuous stirred tank reactor (CSTR) system, Nt. Biodeter. Biodegr., 85, 583–586, https://doi.org/10.1016/j.ibiod.2013.03.031, 2013.
Zeisel, S., Dacosta, K., Youssef, M., and Hensey, S.: Conversion of dietary choline to trimethylamine and dimethylamine in rats – dose–response relationship, J. Nutr., 119, 800–804, 1989.
Zhang, A. Q., Mitchell, S. C., and Smith, R. L.: Dietary precursors of trimethylamine in man: a pilot study, Food Chem. Toxicol., 37, 515–520, 1999.
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