Articles | Volume 15, issue 1
https://doi.org/10.5194/bg-15-1-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-15-1-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
02 Jan 2018
Research article |
| 02 Jan 2018
Effect of light on N2 fixation and net nitrogen release of Trichodesmium in a field study
Yangyang Lu
State Key Laboratory of Marine Environmental Science, Xiamen
University, Xiamen, China
College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
Zuozhu Wen
State Key Laboratory of Marine Environmental Science, Xiamen
University, Xiamen, China
College of Environment and Ecology, Xiamen University, Xiamen, China
Dalin Shi
State Key Laboratory of Marine Environmental Science, Xiamen
University, Xiamen, China
College of Environment and Ecology, Xiamen University, Xiamen, China
Mingming Chen
State Key Laboratory of Marine Environmental Science, Xiamen
University, Xiamen, China
College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
Yao Zhang
State Key Laboratory of Marine Environmental Science, Xiamen
University, Xiamen, China
College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
Sophie Bonnet
IRD, Aix Marseille Université, CNRS/INSU, Université de
Toulon, Mediterranean Institute of Oceanography (MIO), New Caledonia, France
Yuhang Li
Institute of Oceanology, Chinese Academy of Sciences, Qingdao, China
Jiwei Tian
Physical Oceanography Laboratory, Ocean University of China, Qingdao, China
Shuh-Ji Kao
CORRESPONDING AUTHOR
State Key Laboratory of Marine Environmental Science, Xiamen
University, Xiamen, China
College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
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Marcus Stenegren, Andrea Caputo, Carlo Berg, Sophie Bonnet, and Rachel A. Foster
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Thierry Moutin, Andrea Michelangelo Doglioli, Alain de Verneil, and Sophie Bonnet
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The overall goal of OUTPACE was to obtain a successful representation of the interactions between planktonic organisms and the cycle of biogenic elements in the western tropical South Pacific Ocean across trophic and N2 fixation gradients. The international OUTPACE cruise took place between 18 February and 3 April 2015 aboard the RV L’Atalante and involved 60 scientists. The transect covered ~4 000 km from the western part of the Melanesian archipelago to the western boundary of the gyre.
Xiang Gong, Wensheng Jiang, Linhui Wang, Huiwang Gao, Emmanuel Boss, Xiaohong Yao, Shuh-Ji Kao, and Jie Shi
Biogeosciences, 14, 2371–2386, https://doi.org/10.5194/bg-14-2371-2017, https://doi.org/10.5194/bg-14-2371-2017, 2017
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The subsurface chlorophyll maximum layer (SCML) forms near the nitracline. By incorporating a piecewise function for the approximate Gaussian vertical profile of chlorophyll, we derive analytical solutions of a specified nutrient–phytoplankton model. Nitracline depth is deeper than SCML depth, and a thinner SCML corresponds to a steeper nitracline. A higher light attenuation coefficient leads to a shallower but steeper nitracline. Nitracline steepness is independent of surface light intensity.
Tsung-Yu Lee, Li-Chin Lee, Jr-Chuan Huang, Shih-Hao Jien, Thomas Hein, Franz Zehetner, Shuh-Ji Kao, and Fuh-Kwo Shiah
Biogeosciences Discuss., https://doi.org/10.5194/bg-2017-105, https://doi.org/10.5194/bg-2017-105, 2017
Revised manuscript not accepted
Min Nina Xu, Yanhua Wu, Li Wei Zheng, Zhenzhen Zheng, Huade Zhao, Edward A. Laws, and Shuh-Ji Kao
Biogeosciences, 14, 1021–1038, https://doi.org/10.5194/bg-14-1021-2017, https://doi.org/10.5194/bg-14-1021-2017, 2017
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To resolve multiple N transformation rates, we proposed an innovative “isotope matrix method” to simultaneously derive rates for multiple transformations. This method was designed specifically for incubations in the euphotic zone under simulated in situ light conditions and minimized potential biases caused by non-targeted processes. The method facilitates simple post hoc analysis of data and can be used to probe specific effects of environmental factors on the rates of interactive N processes.
Audrey Gimenez, Melika Baklouti, Sophie Bonnet, and Thierry Moutin
Biogeosciences, 13, 5103–5120, https://doi.org/10.5194/bg-13-5103-2016, https://doi.org/10.5194/bg-13-5103-2016, 2016
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In the context of the VAHINE mesocosm experiment in the Nouméa lagoon (New Caledonia), a 1-D vertical biogeochemical mechanistic model was used together with the in situ experiment to complement our comprehension of the planktonic ecosystem dynamics and the main biogeochemical carbon, nitrogen and phosphate fluxes. The model also showed the fate of fixed N2 by providing, over time, the proportion of diazotroph-derived nitrogen (DDN) in each compartment (mineral and organic) of the model.
Angela N. Knapp, Sarah E. Fawcett, Alfredo Martínez-Garcia, Nathalie Leblond, Thierry Moutin, and Sophie Bonnet
Biogeosciences, 13, 4645–4657, https://doi.org/10.5194/bg-13-4645-2016, https://doi.org/10.5194/bg-13-4645-2016, 2016
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The goal of this manuscript was to track the fate of newly fixed nitrogen (N) in large volume mesocosms in the coastal waters of New Caledonia. We used a N isotope ("δ15N") budget and found a shift in the δ15N of sinking particulate N over the 23-day experiment, indicating that nitrate supported export production at the beginning of the experiment, but that nitrogen fixation supported export at the end. We infer that nitrogen fixation supported export production by a release of dissolved N.
Sophie Bonnet, Melika Baklouti, Audrey Gimenez, Hugo Berthelot, and Ilana Berman-Frank
Biogeosciences, 13, 4461–4479, https://doi.org/10.5194/bg-13-4461-2016, https://doi.org/10.5194/bg-13-4461-2016, 2016
Dina Spungin, Ulrike Pfreundt, Hugo Berthelot, Sophie Bonnet, Dina AlRoumi, Frank Natale, Wolfgang R. Hess, Kay D. Bidle, and Ilana Berman-Frank
Biogeosciences, 13, 4187–4203, https://doi.org/10.5194/bg-13-4187-2016, https://doi.org/10.5194/bg-13-4187-2016, 2016
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The marine cyanobacterium Trichodesmium spp. forms massive blooms important to carbon and nitrogen cycling in the oceans that often collapse abruptly. We investigated a Trichodesmium bloom in the lagoon waters of New Caledonia to specifically elucidate the cellular processes mediating the bloom decline. We demonstrate physiological, biochemical, and genetic evidence for nutrient and oxidative stress that induced a genetically controlled programmed cell death (PCD) pathway leading to bloom demise.
Ulrike Pfreundt, Dina Spungin, Sophie Bonnet, Ilana Berman-Frank, and Wolfgang R. Hess
Biogeosciences, 13, 4135–4149, https://doi.org/10.5194/bg-13-4135-2016, https://doi.org/10.5194/bg-13-4135-2016, 2016
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The VAHINE experiment in the New Caledonia lagoon (SW Pacific) targeted the dynamics of nutrient pools and fluxes, N2 fixation, and the composition and productivity of the microbial communities. To connect this information to the actual activities of diverse microbial taxa, we present the analysis of the community-wide gene expression for 23 days. The results from this experiment provide insight into the microbial activities in a low-nutrient, low-chlorophyll ecosystem and within a mesocosm.
Hugo Berthelot, Sophie Bonnet, Olivier Grosso, Véronique Cornet, and Aude Barani
Biogeosciences, 13, 4005–4021, https://doi.org/10.5194/bg-13-4005-2016, https://doi.org/10.5194/bg-13-4005-2016, 2016
France Van Wambeke, Ulrike Pfreundt, Aude Barani, Hugo Berthelot, Thierry Moutin, Martine Rodier, Wolfgang R. Hess, and Sophie Bonnet
Biogeosciences, 13, 3187–3202, https://doi.org/10.5194/bg-13-3187-2016, https://doi.org/10.5194/bg-13-3187-2016, 2016
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The phytoplankton is at the base of the plankton food web in large parts of oceanic "deserts" such as the South Pacific Ocean, where nitrogen sources limit activity. Mesocosms were fertilized with phosphorus to stimulate diazotrophy (atmospheric N2 fixation). Mostly diazotroph-derived nitrogen fuelled the heterotrophic bacterial community through indirect processes generating dissolved organic matter and detritus, such as mortality, lysis and grazing of both diazotrophs and non-diazotrophs.
Brian P. V. Hunt, Sophie Bonnet, Hugo Berthelot, Brandon J. Conroy, Rachel A. Foster, and Marc Pagano
Biogeosciences, 13, 3131–3145, https://doi.org/10.5194/bg-13-3131-2016, https://doi.org/10.5194/bg-13-3131-2016, 2016
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Biological nitrogen (N) fixation is an important source of N for food webs in tropical and subtropical oceans. However, uptake pathways remain poorly understood. This study found that fixed N contributed a third of total zooplankton N in the New Caledonia lagoon. Fixed N reached the zooplankton through 1) direct grazing on N fixers and 2) grazing on phytoplankton that had taken up N released by fixers. We report the first record of direct zooplankton grazing on the unicellular N fixer UCYN-C.
Sophie Bonnet, Thierry Moutin, Martine Rodier, Jean-Michel Grisoni, Francis Louis, Eric Folcher, Bertrand Bourgeois, Jean-Michel Boré, and Armelle Renaud
Biogeosciences, 13, 2803–2814, https://doi.org/10.5194/bg-13-2803-2016, https://doi.org/10.5194/bg-13-2803-2016, 2016
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e main goal of the VAHINE project was to study the fate of N2 fixation in the ocean. Three large-volume (~ 50 m3) mesocosms were deployed in a tropical oligotrophic ecosystem (the New Caledonia lagoon, south-eastern Pacific). This introductory paper describes the scientific objectives of the project in detail as well as the implementation plan: the mesocosm description and deployment, the selection of the study site, and the logistical and sampling strategy.
Sophie Bonnet, Hugo Berthelot, Kendra Turk-Kubo, Sarah Fawcett, Eyal Rahav, Stéphane L'Helguen, and Ilana Berman-Frank
Biogeosciences, 13, 2653–2673, https://doi.org/10.5194/bg-13-2653-2016, https://doi.org/10.5194/bg-13-2653-2016, 2016
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N2 fixation rates were measured daily in ~ 50 m3 mesocosms deployed in New Caledonia to investigate the high-frequency dynamics of diazotrophy and the fate of diazotroph-derived nitrogen (DDN) oligotrophic ecosystems. ~ 10 % of UCYN-C from the water column were exported daily to the traps, representing as much as 22.4 ± 5.5 % of the total POC exported at the height of the UCYN-C bloom. 16 ± 6 % of the DDN was released to the dissolved pool and 21 ± 4 % was transferred to non-diazotrophic plankton.
Ulrike Pfreundt, France Van Wambeke, Mathieu Caffin, Sophie Bonnet, and Wolfgang R. Hess
Biogeosciences, 13, 2319–2337, https://doi.org/10.5194/bg-13-2319-2016, https://doi.org/10.5194/bg-13-2319-2016, 2016
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The Southwest Pacific has one of the highest N2 fixation rates in the global ocean, yet information is scarce on the bacterioplankton interrelationships. We detected high microbial diversity in the New Caledonia lagoon and inside a 50 000 L experimental enclosure of the same water mass over 3 weeks and give evidence for previously unknown niche partitioning. Phosphate fertilization promoted the growth of efficient N2 fixing cyanobacteria triggering the growth of most heterotrophic bacteria.
Jr-Chuan Huang, Tsung-Yu Lee, Teng-Chiu Lin, Thomas Hein, Li-Chin Lee, Yu-Ting Shih, Shuh-Ji Kao, Fuh-Kwo Shiah, and Neng-Huei Lin
Biogeosciences, 13, 1787–1800, https://doi.org/10.5194/bg-13-1787-2016, https://doi.org/10.5194/bg-13-1787-2016, 2016
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The mean riverine DIN export of 49 watersheds in Taiwan is ∼ 3800 kg N km−2 yr−1, 18 times the global average. The mean riverine DIN export ratio is 0.30–0.51, which is much higher than the average of 0.20–0.25 of large rivers around the world, indicating excessive N input relative to ecosystem retention capacity. The DIN export ratio is positively related to agriculture input, and levels of human disturbance and watersheds with high DIN export ratios are likely at advanced stages of N excess.
Shuh-Ji Kao, Tzu-Ling Chiang, Da-Wei Li, Yi-Chia Hsin, Li-Wei Zheng, Jin-Yu Terence Yang, Shih-Chieh Hsu, Chau-Ron Wu, and Minhan Dai
Clim. Past Discuss., https://doi.org/10.5194/cp-2015-167, https://doi.org/10.5194/cp-2015-167, 2016
Preprint withdrawn
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A 3-D model was run for the South China Sea to explore the effects of sea level drop and monsoon wind intensity on glacial patterns of circulation and ventilation. Winter northeasterly monsoon wind intensity governs the volume transport of Kuroshio intrusion through the Luzon Strait, subsequently, the water exchange rate and the mean residence time of water body of the SCS.
L. Luo, X. H. Yao, H. W. Gao, S. C. Hsu, J. W. Li, and S. J. Kao
Atmos. Chem. Phys., 16, 325–341, https://doi.org/10.5194/acp-16-325-2016, https://doi.org/10.5194/acp-16-325-2016, 2016
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Concentrations and depositions of various nitrogen species of water-soluble fraction in aerosols were observed during spring over the eastern China seas and northwestern Pacific Ocean. Results revealed nitrogen deposition associated with the sea fog weather was 6 times higher than that of spring supply from the Yangtze River to the ECS shelf. The DON emission had occurred most likely during sea spray. Weather conditions modulate the nitrogen exchange at the ocean-atmosphere boundary.
K. A. Turk-Kubo, I. E. Frank, M. E. Hogan, A. Desnues, S. Bonnet, and J. P. Zehr
Biogeosciences, 12, 7435–7452, https://doi.org/10.5194/bg-12-7435-2015, https://doi.org/10.5194/bg-12-7435-2015, 2015
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-A shift from diatom-associated diazotrophs (DDAs) to unicellular cyanobacterial group C (UCYN-C) in response to DIP fertilization was captured in a large-scale mesocosm experiment in the Noumea lagoon (NL), a low-nutrient low-chlorophyll coastal environment. -First report of in situ net growth and mortality rates for unicellular diazotrophs UCYN-A2, and UCYN-C. -First quantitative abundance data for diazotrophs in NL indicate that DDAs and UCYN-A1/A2 may be important N2 fixers in this region.
H. Berthelot, T. Moutin, S. L'Helguen, K. Leblanc, S. Hélias, O. Grosso, N. Leblond, B. Charrière, and S. Bonnet
Biogeosciences, 12, 4099–4112, https://doi.org/10.5194/bg-12-4099-2015, https://doi.org/10.5194/bg-12-4099-2015, 2015
Y.-T. Shih, T.-Y. Lee, J.-C. Huang, S.-J. Kao, K.-K. Liu, and F.-J. Chang
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hessd-12-449-2015, https://doi.org/10.5194/hessd-12-449-2015, 2015
Revised manuscript not accepted
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This study combines the observed riverine DIN (dissolved inorganic nitrogen) export and the controlling factors (land-use, population and discharge) to inversely estimate the effective DIN yield factors for individual land-use and per capita loading. Those estimated DIN yield factors can extrapolate all possible combinations of land-use, discharge, and population density, demonstrating the capability for scenario assessment.
T.-Y. Lee, Y.-T. Shih, J.-C. Huang, S.-J. Kao, F.-K. Shiah, and K.-K. Liu
Biogeosciences, 11, 5307–5321, https://doi.org/10.5194/bg-11-5307-2014, https://doi.org/10.5194/bg-11-5307-2014, 2014
C. Ridame, J. Dekaezemacker, C. Guieu, S. Bonnet, S. L'Helguen, and F. Malien
Biogeosciences, 11, 4783–4800, https://doi.org/10.5194/bg-11-4783-2014, https://doi.org/10.5194/bg-11-4783-2014, 2014
S.-C. Hsu, G.-C. Gong, F.-K. Shiah, C.-C. Hung, S.-J. Kao, R. Zhang, W.-N. Chen, C.-C. Chen, C. C.-K. Chou, Y.-C. Lin, F.-J. Lin, and S.-H. Lin
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acpd-14-21433-2014, https://doi.org/10.5194/acpd-14-21433-2014, 2014
Revised manuscript has not been submitted
N. Jiao, Y. Zhang, K. Zhou, Q. Li, M. Dai, J. Liu, J. Guo, and B. Huang
Biogeosciences, 11, 2465–2475, https://doi.org/10.5194/bg-11-2465-2014, https://doi.org/10.5194/bg-11-2465-2014, 2014
Y. Zhang, X. Xie, N. Jiao, S. S.-Y. Hsiao, and S.-J. Kao
Biogeosciences, 11, 2131–2145, https://doi.org/10.5194/bg-11-2131-2014, https://doi.org/10.5194/bg-11-2131-2014, 2014
S. S.-Y. Hsiao, T.-C. Hsu, J.-w. Liu, X. Xie, Y. Zhang, J. Lin, H. Wang, J.-Y. T. Yang, S.-C. Hsu, M. Dai, and S.-J. Kao
Biogeosciences, 11, 2083–2098, https://doi.org/10.5194/bg-11-2083-2014, https://doi.org/10.5194/bg-11-2083-2014, 2014
J.-Y. T. Yang, S.-C. Hsu, M. H. Dai, S. S.-Y. Hsiao, and S.-J. Kao
Biogeosciences, 11, 1833–1846, https://doi.org/10.5194/bg-11-1833-2014, https://doi.org/10.5194/bg-11-1833-2014, 2014
S.-J. Kao, R. G. Hilton, K. Selvaraj, M. Dai, F. Zehetner, J.-C. Huang, S.-C. Hsu, R. Sparkes, J. T. Liu, T.-Y. Lee, J.-Y. T. Yang, A. Galy, X. Xu, and N. Hovius
Earth Surf. Dynam., 2, 127–139, https://doi.org/10.5194/esurf-2-127-2014, https://doi.org/10.5194/esurf-2-127-2014, 2014
Y.-F. Tseng, J. Lin, M. Dai, and S.-J. Kao
Biogeosciences, 11, 409–423, https://doi.org/10.5194/bg-11-409-2014, https://doi.org/10.5194/bg-11-409-2014, 2014
T.-C. Hsu and S.-J. Kao
Biogeosciences, 10, 7847–7862, https://doi.org/10.5194/bg-10-7847-2013, https://doi.org/10.5194/bg-10-7847-2013, 2013
N. N. Chang, J. C. Shiao, G. C. Gong, S. J. Kao, and C. H. Hsieh
Biogeosciences Discuss., https://doi.org/10.5194/bgd-10-1051-2013, https://doi.org/10.5194/bgd-10-1051-2013, 2013
Revised manuscript not accepted
Related subject area
Biogeochemistry: Open Ocean
Anthropogenic carbon storage and its decadal changes in the Atlantic between 1990–2020
Ocean alkalinity enhancement impacts: regrowth of marine microalgae in alkaline mineral concentrations simulating the initial concentrations after ship-based dispersions
Climatic controls on metabolic constraints in the ocean
Effects of grain size and seawater salinity on magnesium hydroxide dissolution and secondary calcium carbonate precipitation kinetics: implications for ocean alkalinity enhancement
Short-term response of Emiliania huxleyi growth and morphology to abrupt salinity stress
Assessing the impact of CO2-equilibrated ocean alkalinity enhancement on microbial metabolic rates in an oligotrophic system
Phosphomonoesterase and phosphodiesterase activities in the eastern Mediterranean in two contrasting seasonal situations
Hydrological cycle amplification imposes spatial pattern on climate change response of ocean pH and carbonate chemistry
Net primary production annual maxima in the North Atlantic projected to shift in the 21st century
Testing the influence of light on nitrite cycling in the eastern tropical North Pacific
Loss of nitrogen via anaerobic ammonium oxidation (anammox) in the California Current system during the late Quaternary
Drivers of decadal trends of the ocean carbon sink in the past, present, and future in Earth system models
Technical note: Assessment of float pH data quality control methods – a case study in the subpolar northwest Atlantic Ocean
Linking northeastern North Pacific oxygen changes to upstream surface outcrop variations
Evaluation of CMIP6 Models Performance in Simulating Historical Biogeochemistry across Southern South China Sea
Underestimation of multi-decadal global O2 loss due to an optimal interpolation method
Reviews and syntheses: expanding the global coverage of gross primary production and net community production measurements using Biogeochemical-Argo floats
Assessing the tropical Atlantic biogeochemical processes in the Norwegian Earth System Model
Characteristics of surface physical and biogeochemical parameters within mesoscale eddies in the Southern Ocean
Seasonal dynamics and annual budget of dissolved inorganic carbon in the northwestern Mediterranean deep-convection region
The fingerprint of climate variability on the surface ocean cycling of iron and its isotopes
Reconstructing the ocean's mesopelagic zone carbon budget: sensitivity and estimation of parameters associated with prokaryotic remineralization
Evolution of oxygen and stratification in the North Pacific Ocean in CMIP6 Earth System Models
Seasonal cycles of biogeochemical fluxes in the Scotia Sea, Southern Ocean: a stable isotope approach
Absence of photophysiological response to iron addition in autumn phytoplankton in the Antarctic sea-ice zone
Optimal parameters for the ocean's nutrient, carbon, and oxygen cycles compensate for circulation biases but replumb the biological pump
Importance of multiple sources of iron for the upper-ocean biogeochemistry over the northern Indian Ocean
Exploring the role of different data types and timescales in the quality of marine biogeochemical model calibration
All about nitrite: exploring nitrite sources and sinks in the eastern tropical North Pacific oxygen minimum zone
Fossil coccolith morphological attributes as a new proxy for deep ocean carbonate chemistry
Reconstructing ocean carbon storage with CMIP6 Earth system models and synthetic Argo observations
Using machine learning and Biogeochemical-Argo (BGC-Argo) floats to assess biogeochemical models and optimize observing system design
The representation of alkalinity and the carbonate pump from CMIP5 to CMIP6 Earth system models and implications for the carbon cycle
Model estimates of metazoans' contributions to the biological carbon pump
Tracing differences in iron supply to the Mid-Atlantic Ridge valley between hydrothermal vent sites: implications for the addition of iron to the deep ocean
Nitrite cycling in the primary nitrite maxima of the eastern tropical North Pacific
Hotspots and drivers of compound marine heatwaves and low net primary production extremes
Ecosystem impacts of marine heat waves in the northeast Pacific
Tracing the role of Arctic shelf processes in Si and N cycling and export through the Fram Strait: insights from combined silicon and nitrate isotopes
Controls on the relative abundances and rates of nitrifying microorganisms in the ocean
The response of diazotrophs to nutrient amendment in the South China Sea and western North Pacific
Influence of GEOTRACES data distribution and misfit function choice on objective parameter retrieval in a marine zinc cycle model
Physiological flexibility of phytoplankton impacts modelled chlorophyll and primary production across the North Pacific Ocean
Observation-constrained estimates of the global ocean carbon sink from Earth system models
Early winter barium excess in the southern Indian Ocean as an annual remineralisation proxy (GEOTRACES GIPr07 cruise)
Controlling factors on the global distribution of a representative marine non-cyanobacterial diazotroph phylotype (Gamma A)
Summer trends and drivers of sea surface fCO2 and pH changes observed in the southern Indian Ocean over the last two decades (1998–2019)
Global nutrient cycling by commercially targeted marine fish
Major processes of the dissolved cobalt cycle in the North and equatorial Pacific Ocean
The impact of the South-East Madagascar Bloom on the oceanic CO2 sink
Reiner Steinfeldt, Monika Rhein, and Dagmar Kieke
Biogeosciences, 21, 3839–3867, https://doi.org/10.5194/bg-21-3839-2024, https://doi.org/10.5194/bg-21-3839-2024, 2024
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We calculate the amount of anthropogenic carbon (Cant) in the Atlantic for the years 1990, 2000, 2010 and 2020. Cant is the carbon that is taken up by the ocean as a result of humanmade CO2 emissions. To determine the amount of Cant, we apply a technique that is based on the observations of other humanmade gases (e.g., chlorofluorocarbons). Regionally, changes in ocean ventilation have an impact on the storage of Cant. Overall, the increase in Cant is driven by the rising CO2 in the atmosphere.
Stephanie Delacroix, Tor Jensen Nystuen, August E. Dessen Tobiesen, Andrew L. King, and Erik Höglund
Biogeosciences, 21, 3677–3690, https://doi.org/10.5194/bg-21-3677-2024, https://doi.org/10.5194/bg-21-3677-2024, 2024
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The addition of alkaline minerals into the ocean might reduce excessive anthropogenic CO2 emissions. Magnesium hydroxide can be added in large amounts because of its low seawater solubility without reaching harmful pH levels. The toxicity effect results of magnesium hydroxide, by simulating the expected concentrations from a ship's dispersion scenario, demonstrated low impacts on both sensitive and local assemblages of marine microalgae when compared to calcium hydroxide.
Precious Mongwe, Matthew Long, Takamitsu Ito, Curtis Deutsch, and Yeray Santana-Falcón
Biogeosciences, 21, 3477–3490, https://doi.org/10.5194/bg-21-3477-2024, https://doi.org/10.5194/bg-21-3477-2024, 2024
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We use a collection of measurements that capture the physiological sensitivity of organisms to temperature and oxygen and a CESM1 large ensemble to investigate how natural climate variations and climate warming will impact the ability of marine heterotrophic marine organisms to support habitats in the future. We find that warming and dissolved oxygen loss over the next several decades will reduce the volume of ocean habitats and will increase organisms' vulnerability to extremes.
Charly A. Moras, Tyler Cyronak, Lennart T. Bach, Renaud Joannes-Boyau, and Kai G. Schulz
Biogeosciences, 21, 3463–3475, https://doi.org/10.5194/bg-21-3463-2024, https://doi.org/10.5194/bg-21-3463-2024, 2024
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We investigate the effects of mineral grain size and seawater salinity on magnesium hydroxide dissolution and calcium carbonate precipitation kinetics for ocean alkalinity enhancement. Salinity did not affect the dissolution, but calcium carbonate formed earlier at lower salinities due to the lower magnesium and dissolved organic carbon concentrations. Smaller grain sizes dissolved faster but calcium carbonate precipitated earlier, suggesting that medium grain sizes are optimal for kinetics.
Rosie M. Sheward, Christina Gebühr, Jörg Bollmann, and Jens O. Herrle
Biogeosciences, 21, 3121–3141, https://doi.org/10.5194/bg-21-3121-2024, https://doi.org/10.5194/bg-21-3121-2024, 2024
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How quickly do marine microorganisms respond to salinity stress? Our experiments with the calcifying marine plankton Emiliania huxleyi show that growth and cell morphology responded to salinity stress within as little as 24–48 hours, demonstrating that morphology and calcification are sensitive to salinity over a range of timescales. Our results have implications for understanding the short-term role of E. huxleyi in biogeochemical cycles and in size-based paleoproxies for salinity.
Laura Marín-Samper, Javier Arístegui, Nauzet Hernández-Hernández, Joaquín Ortiz, Stephen D. Archer, Andrea Ludwig, and Ulf Riebesell
Biogeosciences, 21, 2859–2876, https://doi.org/10.5194/bg-21-2859-2024, https://doi.org/10.5194/bg-21-2859-2024, 2024
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Our planet is facing a climate crisis. Scientists are working on innovative solutions that will aid in capturing the hard to abate emissions before it is too late. Exciting research reveals that ocean alkalinity enhancement, a key climate change mitigation strategy, does not harm phytoplankton, the cornerstone of marine ecosystems. Through meticulous study, we may have uncovered a positive relationship: up to a specific limit, enhancing ocean alkalinity boosts photosynthesis by certain species.
France Van Wambeke, Pascal Conan, Mireille Pujo-Pay, Vincent Taillandier, Olivier Crispi, Alexandra Pavlidou, Sandra Nunige, Morgane Didry, Christophe Salmeron, and Elvira Pulido-Villena
Biogeosciences, 21, 2621–2640, https://doi.org/10.5194/bg-21-2621-2024, https://doi.org/10.5194/bg-21-2621-2024, 2024
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Phosphomonoesterase (PME) and phosphodiesterase (PDE) activities over the epipelagic zone are described in the eastern Mediterranean Sea in winter and autumn. The types of concentration kinetics obtained for PDE (saturation at 50 µM, high Km, high turnover times) compared to those of PME (saturation at 1 µM, low Km, low turnover times) are discussed in regard to the possible inequal distribution of PDE and PME in the size continuum of organic material and accessibility to phosphodiesters.
Allison Hogikyan and Laure Resplandy
EGUsphere, https://doi.org/10.5194/egusphere-2024-1189, https://doi.org/10.5194/egusphere-2024-1189, 2024
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Rising atmospheric CO2 influences ocean carbon chemistry leading to ocean acidification. Global warming introduces spatial patterns in the intensity of ocean acidification. We show that the most prominent spatial patterns are controlled by warming-driven changes in rainfall and evaporation, and not by the direct effect of warming on carbon chemistry and pH. This rainfall/evaporation effect opposes acidification in saltier parts of the ocean and enhances acidification in fresher regions.
Jenny Hieronymus, Magnus Hieronymus, Matthias Gröger, Jörg Schwinger, Raffaele Bernadello, Etienne Tourigny, Valentina Sicardi, Itzel Ruvalcaba Baroni, and Klaus Wyser
Biogeosciences, 21, 2189–2206, https://doi.org/10.5194/bg-21-2189-2024, https://doi.org/10.5194/bg-21-2189-2024, 2024
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The timing of the net primary production annual maxima in the North Atlantic in the period 1750–2100 is investigated using two Earth system models and the high-emissions scenario SSP5-8.5. It is found that, for most of the region, the annual maxima occur progressively earlier, with the most change occurring after the year 2000. Shifts in the seasonality of the primary production may impact the entire ecosystem, which highlights the need for long-term monitoring campaigns in this area.
Nicole M. Travis, Colette L. Kelly, and Karen L. Casciotti
Biogeosciences, 21, 1985–2004, https://doi.org/10.5194/bg-21-1985-2024, https://doi.org/10.5194/bg-21-1985-2024, 2024
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We conducted experimental manipulations of light level on microbial communities from the primary nitrite maximum. Overall, while individual microbial processes have different directions and magnitudes in their response to increasing light, the net community response is a decline in nitrite production with increasing light. We conclude that while increased light may decrease net nitrite production, high-light conditions alone do not exclude nitrification from occurring in the surface ocean.
Zoë Rebecca van Kemenade, Zeynep Erdem, Ellen Christine Hopmans, Jaap Smede Sinninghe Damsté, and Darci Rush
Biogeosciences, 21, 1517–1532, https://doi.org/10.5194/bg-21-1517-2024, https://doi.org/10.5194/bg-21-1517-2024, 2024
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The California Current system (CCS) hosts the eastern subtropical North Pacific oxygen minimum zone (ESTNP OMZ). This study shows anaerobic ammonium oxidizing (anammox) bacteria cause a loss of bioavailable nitrogen (N) in the ESTNP OMZ throughout the late Quaternary. Anammox occurred during both glacial and interglacial periods and was driven by the supply of organic matter and changes in ocean currents. These findings may have important consequences for biogeochemical models of the CCS.
Jens Terhaar
EGUsphere, https://doi.org/10.5194/egusphere-2024-773, https://doi.org/10.5194/egusphere-2024-773, 2024
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Despite the ocean’s importance for the carbon cycle and hence the climate, observing the ocean carbon sink remains challenging. Here, I use an ensemble of 12 Models to understand drivers of decadal trends of the past, present and future ocean carbon sink. I show that 80 % of decadal trends in the multi-model mean ocean carbon sink can be explained by changes in decadal trends of atmospheric CO2. The remaining 20 % are due to internal climate variability and ocean heat uptake.
Cathy Wimart-Rousseau, Tobias Steinhoff, Birgit Klein, Henry Bittig, and Arne Körtzinger
Biogeosciences, 21, 1191–1211, https://doi.org/10.5194/bg-21-1191-2024, https://doi.org/10.5194/bg-21-1191-2024, 2024
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The marine CO2 system can be measured independently and continuously by BGC-Argo floats since numerous pH sensors have been developed to suit these autonomous measurements platforms. By applying the Argo correction routines to float pH data acquired in the subpolar North Atlantic Ocean, we report the uncertainty and lack of objective criteria associated with the choice of the reference method as well the reference depth for the pH correction.
Sabine Mecking and Kyla Drushka
Biogeosciences, 21, 1117–1133, https://doi.org/10.5194/bg-21-1117-2024, https://doi.org/10.5194/bg-21-1117-2024, 2024
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This study investigates whether northeastern North Pacific oxygen changes may be caused by surface density changes in the northwest as water moves along density horizons from the surface into the subsurface ocean. A correlation is found with a lag that about matches the travel time of water from the northwest to the northeast. Salinity is the main driver causing decadal changes in surface density, whereas salinity and temperature contribute about equally to long-term declining density trends.
Winfred Marshal, Jing Xiang Chung, and Mohd Fadzil Bin Mohd Akhir
EGUsphere, https://doi.org/10.5194/egusphere-2024-72, https://doi.org/10.5194/egusphere-2024-72, 2024
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This study stands out for thoroughly examining CMIP6 ESMs ability to simulate biogeochemical variables in the southern South China Sea, an economically important region. It assesses variables like chlorophyll, phytoplankton, nitrate and oxygen on annual and seasonal scales. While global assessments exist, this study addresses a gap by objectively ranking 13 CMIP6 ocean biogeochemistry models' performance at a regional level, focusing on replicating specific observed biogeochemical variables.
Takamitsu Ito, Hernan E. Garcia, Zhankun Wang, Shoshiro Minobe, Matthew C. Long, Just Cebrian, James Reagan, Tim Boyer, Christopher Paver, Courtney Bouchard, Yohei Takano, Seth Bushinsky, Ahron Cervania, and Curtis A. Deutsch
Biogeosciences, 21, 747–759, https://doi.org/10.5194/bg-21-747-2024, https://doi.org/10.5194/bg-21-747-2024, 2024
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This study aims to estimate how much oceanic oxygen has been lost and its uncertainties. One major source of uncertainty comes from the statistical gap-filling methods. Outputs from Earth system models are used to generate synthetic observations where oxygen data are extracted from the model output at the location and time of historical oceanographic cruises. Reconstructed oxygen trend is approximately two-thirds of the true trend.
Robert W. Izett, Katja Fennel, Adam C. Stoer, and David P. Nicholson
Biogeosciences, 21, 13–47, https://doi.org/10.5194/bg-21-13-2024, https://doi.org/10.5194/bg-21-13-2024, 2024
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This paper provides an overview of the capacity to expand the global coverage of marine primary production estimates using autonomous ocean-going instruments, called Biogeochemical-Argo floats. We review existing approaches to quantifying primary production using floats, provide examples of the current implementation of the methods, and offer insights into how they can be better exploited. This paper is timely, given the ongoing expansion of the Biogeochemical-Argo array.
Shunya Koseki, Lander R. Crespo, Jerry Tjiputra, Filippa Fransner, Noel S. Keenlyside, and David Rivas
EGUsphere, https://doi.org/10.5194/egusphere-2023-2947, https://doi.org/10.5194/egusphere-2023-2947, 2023
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We investigated how the physical biases of an Earth system model influence the marine biogeochemical processes in the tropical Atlantic. With four different configurations of the model, we have shown that the versions with better SST reproduction tend to represent the primary production and sea-air CO2 flux in terms of climatology, seasonal cycle, and responses to climate variability.
Qian Liu, Yingjie Liu, and Xiaofeng Li
Biogeosciences, 20, 4857–4874, https://doi.org/10.5194/bg-20-4857-2023, https://doi.org/10.5194/bg-20-4857-2023, 2023
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In the Southern Ocean, abundant eddies behave opposite to our expectations. That is, anticyclonic (cyclonic) eddies are cold (warm). By investigating the variations of physical and biochemical parameters in eddies, we find that abnormal eddies have unique and significant effects on modulating the parameters. This study fills a gap in understanding the effects of abnormal eddies on physical and biochemical parameters in the Southern Ocean.
Caroline Ulses, Claude Estournel, Patrick Marsaleix, Karline Soetaert, Marine Fourrier, Laurent Coppola, Dominique Lefèvre, Franck Touratier, Catherine Goyet, Véronique Guglielmi, Fayçal Kessouri, Pierre Testor, and Xavier Durrieu de Madron
Biogeosciences, 20, 4683–4710, https://doi.org/10.5194/bg-20-4683-2023, https://doi.org/10.5194/bg-20-4683-2023, 2023
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Deep convection plays a key role in the circulation, thermodynamics, and biogeochemical cycles in the Mediterranean Sea, considered to be a hotspot of biodiversity and climate change. In this study, we investigate the seasonal and annual budget of dissolved inorganic carbon in the deep-convection area of the northwestern Mediterranean Sea.
Daniela König and Alessandro Tagliabue
Biogeosciences, 20, 4197–4212, https://doi.org/10.5194/bg-20-4197-2023, https://doi.org/10.5194/bg-20-4197-2023, 2023
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Using model simulations, we show that natural and anthropogenic changes in the global climate leave a distinct fingerprint in the isotopic signatures of iron in the surface ocean. We find that these climate effects on iron isotopes are often caused by the redistribution of iron from different external sources to the ocean, due to changes in ocean currents, and by changes in algal growth, which take up iron. Thus, isotopes may help detect climate-induced changes in iron supply and algal uptake.
Chloé Baumas, Robin Fuchs, Marc Garel, Jean-Christophe Poggiale, Laurent Memery, Frédéric A. C. Le Moigne, and Christian Tamburini
Biogeosciences, 20, 4165–4182, https://doi.org/10.5194/bg-20-4165-2023, https://doi.org/10.5194/bg-20-4165-2023, 2023
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Through the sink of particles in the ocean, carbon (C) is exported and sequestered when reaching 1000 m. Attempts to quantify C exported vs. C consumed by heterotrophs have increased. Yet most of the conducted estimations have led to C demands several times higher than C export. The choice of parameters greatly impacts the results. As theses parameters are overlooked, non-accurate values are often used. In this study we show that C budgets can be well balanced when using appropriate values.
Lyuba Novi, Annalisa Bracco, Takamitsu Ito, and Yohei Takano
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-129, https://doi.org/10.5194/bg-2023-129, 2023
Revised manuscript accepted for BG
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We explored the relationship between oxygen and stratification in the North Pacific Ocean, using a combination of data mining and machine learning. We used isopycnic potential vorticity (IPV) as an indicator to quantify ocean ventilation and we analyzed its predictability, a strong O2-IPV connection and predictability for IPV in the tropical Pacific. This open new routes to monitor ocean O2 through few observational sites co-located with more abundant IPV measurements in the tropical Pacific.
Anna Belcher, Sian F. Henley, Katharine Hendry, Marianne Wootton, Lisa Friberg, Ursula Dallman, Tong Wang, Christopher Coath, and Clara Manno
Biogeosciences, 20, 3573–3591, https://doi.org/10.5194/bg-20-3573-2023, https://doi.org/10.5194/bg-20-3573-2023, 2023
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The oceans play a crucial role in the uptake of atmospheric carbon dioxide, particularly the Southern Ocean. The biological pumping of carbon from the surface to the deep ocean is key to this. Using sediment trap samples from the Scotia Sea, we examine biogeochemical fluxes of carbon, nitrogen, and biogenic silica and their stable isotope compositions. We find phytoplankton community structure and physically mediated processes are important controls on particulate fluxes to the deep ocean.
Asmita Singh, Susanne Fietz, Sandy J. Thomalla, Nicolas Sanchez, Murat V. Ardelan, Sébastien Moreau, Hanna M. Kauko, Agneta Fransson, Melissa Chierici, Saumik Samanta, Thato N. Mtshali, Alakendra N. Roychoudhury, and Thomas J. Ryan-Keogh
Biogeosciences, 20, 3073–3091, https://doi.org/10.5194/bg-20-3073-2023, https://doi.org/10.5194/bg-20-3073-2023, 2023
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Despite the scarcity of iron in the Southern Ocean, seasonal blooms occur due to changes in nutrient and light availability. Surprisingly, during an autumn bloom in the Antarctic sea-ice zone, the results from incubation experiments showed no significant photophysiological response of phytoplankton to iron addition. This suggests that ambient iron concentrations were sufficient, challenging the notion of iron deficiency in the Southern Ocean through extended iron-replete post-bloom conditions.
Benoît Pasquier, Mark Holzer, Matthew A. Chamberlain, Richard J. Matear, Nathaniel L. Bindoff, and François W. Primeau
Biogeosciences, 20, 2985–3009, https://doi.org/10.5194/bg-20-2985-2023, https://doi.org/10.5194/bg-20-2985-2023, 2023
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Modeling the ocean's carbon and oxygen cycles accurately is challenging. Parameter optimization improves the fit to observed tracers but can introduce artifacts in the biological pump. Organic-matter production and subsurface remineralization rates adjust to compensate for circulation biases, changing the pathways and timescales with which nutrients return to the surface. Circulation biases can thus strongly alter the system’s response to ecological change, even when parameters are optimized.
Priyanka Banerjee
Biogeosciences, 20, 2613–2643, https://doi.org/10.5194/bg-20-2613-2023, https://doi.org/10.5194/bg-20-2613-2023, 2023
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This study shows that atmospheric deposition is the most important source of iron to the upper northern Indian Ocean for phytoplankton growth. This is followed by iron from continental-shelf sediment. Phytoplankton increase following iron addition is possible only with high background levels of nitrate. Vertical mixing is the most important physical process supplying iron to the upper ocean in this region throughout the year. The importance of ocean currents in supplying iron varies seasonally.
Iris Kriest, Julia Getzlaff, Angela Landolfi, Volkmar Sauerland, Markus Schartau, and Andreas Oschlies
Biogeosciences, 20, 2645–2669, https://doi.org/10.5194/bg-20-2645-2023, https://doi.org/10.5194/bg-20-2645-2023, 2023
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Global biogeochemical ocean models are often subjectively assessed and tuned against observations. We applied different strategies to calibrate a global model against observations. Although the calibrated models show similar tracer distributions at the surface, they differ in global biogeochemical fluxes, especially in global particle flux. Simulated global volume of oxygen minimum zones varies strongly with calibration strategy and over time, rendering its temporal extrapolation difficult.
John C. Tracey, Andrew R. Babbin, Elizabeth Wallace, Xin Sun, Katherine L. DuRussel, Claudia Frey, Donald E. Martocello III, Tyler Tamasi, Sergey Oleynik, and Bess B. Ward
Biogeosciences, 20, 2499–2523, https://doi.org/10.5194/bg-20-2499-2023, https://doi.org/10.5194/bg-20-2499-2023, 2023
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Nitrogen (N) is essential for life; thus, its availability plays a key role in determining marine productivity. Using incubations of seawater spiked with a rare form of N measurable on a mass spectrometer, we quantified microbial pathways that determine marine N availability. The results show that pathways that recycle N have higher rates than those that result in its loss from biomass and present new evidence for anaerobic nitrite oxidation, a process long thought to be strictly aerobic.
Amanda Gerotto, Hongrui Zhang, Renata Hanae Nagai, Heather M. Stoll, Rubens César Lopes Figueira, Chuanlian Liu, and Iván Hernández-Almeida
Biogeosciences, 20, 1725–1739, https://doi.org/10.5194/bg-20-1725-2023, https://doi.org/10.5194/bg-20-1725-2023, 2023
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Based on the analysis of the response of coccolithophores’ morphological attributes in a laboratory dissolution experiment and surface sediment samples from the South China Sea, we proposed that the thickness shape (ks) factor of fossil coccoliths together with the normalized ks variation, which is the ratio of the standard deviation of ks (σ) over the mean ks (σ/ks), is a robust and novel proxy to reconstruct past changes in deep ocean carbon chemistry.
Katherine E. Turner, Doug M. Smith, Anna Katavouta, and Richard G. Williams
Biogeosciences, 20, 1671–1690, https://doi.org/10.5194/bg-20-1671-2023, https://doi.org/10.5194/bg-20-1671-2023, 2023
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We present a new method for reconstructing ocean carbon using climate models and temperature and salinity observations. To test this method, we reconstruct modelled carbon using synthetic observations consistent with current sampling programmes. Sensitivity tests show skill in reconstructing carbon trends and variability within the upper 2000 m. Our results indicate that this method can be used for a new global estimate for ocean carbon content.
Alexandre Mignot, Hervé Claustre, Gianpiero Cossarini, Fabrizio D'Ortenzio, Elodie Gutknecht, Julien Lamouroux, Paolo Lazzari, Coralie Perruche, Stefano Salon, Raphaëlle Sauzède, Vincent Taillandier, and Anna Teruzzi
Biogeosciences, 20, 1405–1422, https://doi.org/10.5194/bg-20-1405-2023, https://doi.org/10.5194/bg-20-1405-2023, 2023
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Numerical models of ocean biogeochemistry are becoming a major tool to detect and predict the impact of climate change on marine resources and monitor ocean health. Here, we demonstrate the use of the global array of BGC-Argo floats for the assessment of biogeochemical models. We first detail the handling of the BGC-Argo data set for model assessment purposes. We then present 23 assessment metrics to quantify the consistency of BGC model simulations with respect to BGC-Argo data.
Alban Planchat, Lester Kwiatkowski, Laurent Bopp, Olivier Torres, James R. Christian, Momme Butenschön, Tomas Lovato, Roland Séférian, Matthew A. Chamberlain, Olivier Aumont, Michio Watanabe, Akitomo Yamamoto, Andrew Yool, Tatiana Ilyina, Hiroyuki Tsujino, Kristen M. Krumhardt, Jörg Schwinger, Jerry Tjiputra, John P. Dunne, and Charles Stock
Biogeosciences, 20, 1195–1257, https://doi.org/10.5194/bg-20-1195-2023, https://doi.org/10.5194/bg-20-1195-2023, 2023
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Ocean alkalinity is critical to the uptake of atmospheric carbon and acidification in surface waters. We review the representation of alkalinity and the associated calcium carbonate cycle in Earth system models. While many parameterizations remain present in the latest generation of models, there is a general improvement in the simulated alkalinity distribution. This improvement is related to an increase in the export of biotic calcium carbonate, which closer resembles observations.
Jérôme Pinti, Tim DeVries, Tommy Norin, Camila Serra-Pompei, Roland Proud, David A. Siegel, Thomas Kiørboe, Colleen M. Petrik, Ken H. Andersen, Andrew S. Brierley, and André W. Visser
Biogeosciences, 20, 997–1009, https://doi.org/10.5194/bg-20-997-2023, https://doi.org/10.5194/bg-20-997-2023, 2023
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Large numbers of marine organisms such as zooplankton and fish perform daily vertical migration between the surface (at night) and the depths (in the daytime). This fascinating migration is important for the carbon cycle, as these organisms actively bring carbon to depths where it is stored away from the atmosphere for a long time. Here, we quantify the contributions of different animals to this carbon drawdown and storage and show that fish are important to the biological carbon pump.
Alastair J. M. Lough, Alessandro Tagliabue, Clément Demasy, Joseph A. Resing, Travis Mellett, Neil J. Wyatt, and Maeve C. Lohan
Biogeosciences, 20, 405–420, https://doi.org/10.5194/bg-20-405-2023, https://doi.org/10.5194/bg-20-405-2023, 2023
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Iron is a key nutrient for ocean primary productivity. Hydrothermal vents are a source of iron to the oceans, but the size of this source is poorly understood. This study examines the variability in iron inputs between hydrothermal vents in different geological settings. The vents studied release different amounts of Fe, resulting in plumes with similar dissolved iron concentrations but different particulate concentrations. This will help to refine modelling of iron-limited ocean productivity.
Nicole M. Travis, Colette L. Kelly, Margaret R. Mulholland, and Karen L. Casciotti
Biogeosciences, 20, 325–347, https://doi.org/10.5194/bg-20-325-2023, https://doi.org/10.5194/bg-20-325-2023, 2023
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The primary nitrite maximum is a ubiquitous upper ocean feature where nitrite accumulates, but we still do not understand its formation and the co-occurring microbial processes involved. Using correlative methods and rates measurements, we found strong spatial patterns between environmental conditions and depths of the nitrite maxima, but not the maximum concentrations. Nitrification was the dominant source of nitrite, with occasional high nitrite production from phytoplankton near the coast.
Natacha Le Grix, Jakob Zscheischler, Keith B. Rodgers, Ryohei Yamaguchi, and Thomas L. Frölicher
Biogeosciences, 19, 5807–5835, https://doi.org/10.5194/bg-19-5807-2022, https://doi.org/10.5194/bg-19-5807-2022, 2022
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Compound events threaten marine ecosystems. Here, we investigate the potentially harmful combination of marine heatwaves with low phytoplankton productivity. Using satellite-based observations, we show that these compound events are frequent in the low latitudes. We then investigate the drivers of these compound events using Earth system models. The models share similar drivers in the low latitudes but disagree in the high latitudes due to divergent factors limiting phytoplankton production.
Abigale M. Wyatt, Laure Resplandy, and Adrian Marchetti
Biogeosciences, 19, 5689–5705, https://doi.org/10.5194/bg-19-5689-2022, https://doi.org/10.5194/bg-19-5689-2022, 2022
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Marine heat waves (MHWs) are a frequent event in the northeast Pacific, with a large impact on the region's ecosystems. Large phytoplankton in the North Pacific Transition Zone are greatly affected by decreased nutrients, with less of an impact in the Alaskan Gyre. For small phytoplankton, MHWs increase the spring small phytoplankton population in both regions thanks to reduced light limitation. In both zones, this results in a significant decrease in the ratio of large to small phytoplankton.
Margot C. F. Debyser, Laetitia Pichevin, Robyn E. Tuerena, Paul A. Dodd, Antonia Doncila, and Raja S. Ganeshram
Biogeosciences, 19, 5499–5520, https://doi.org/10.5194/bg-19-5499-2022, https://doi.org/10.5194/bg-19-5499-2022, 2022
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We focus on the exchange of key nutrients for algae production between the Arctic and Atlantic oceans through the Fram Strait. We show that the export of dissolved silicon here is controlled by the availability of nitrate which is influenced by denitrification on Arctic shelves. We suggest that any future changes in the river inputs of silica and changes in denitrification due to climate change will impact the amount of silicon exported, with impacts on Atlantic algal productivity and ecology.
Emily J. Zakem, Barbara Bayer, Wei Qin, Alyson E. Santoro, Yao Zhang, and Naomi M. Levine
Biogeosciences, 19, 5401–5418, https://doi.org/10.5194/bg-19-5401-2022, https://doi.org/10.5194/bg-19-5401-2022, 2022
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We use a microbial ecosystem model to quantitatively explain the mechanisms controlling observed relative abundances and nitrification rates of ammonia- and nitrite-oxidizing microorganisms in the ocean. We also estimate how much global carbon fixation can be associated with chemoautotrophic nitrification. Our results improve our understanding of the controls on nitrification, laying the groundwork for more accurate predictions in global climate models.
Zuozhu Wen, Thomas J. Browning, Rongbo Dai, Wenwei Wu, Weiying Li, Xiaohua Hu, Wenfang Lin, Lifang Wang, Xin Liu, Zhimian Cao, Haizheng Hong, and Dalin Shi
Biogeosciences, 19, 5237–5250, https://doi.org/10.5194/bg-19-5237-2022, https://doi.org/10.5194/bg-19-5237-2022, 2022
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Fe and P are key factors controlling the biogeography and activity of marine N2-fixing microorganisms. We found lower abundance and activity of N2 fixers in the northern South China Sea than around the western boundary of the North Pacific, and N2 fixation rates switched from Fe–P co-limitation to P limitation. We hypothesize the Fe supply rates and Fe utilization strategies of each N2 fixer are important in regulating spatial variability in community structure across the study area.
Claudia Eisenring, Sophy E. Oliver, Samar Khatiwala, and Gregory F. de Souza
Biogeosciences, 19, 5079–5106, https://doi.org/10.5194/bg-19-5079-2022, https://doi.org/10.5194/bg-19-5079-2022, 2022
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Given the sparsity of observational constraints on micronutrients such as zinc (Zn), we assess the sensitivities of a framework for objective parameter optimisation in an oceanic Zn cycling model. Our ensemble of optimisations towards synthetic data with varying kinds of uncertainty shows that deficiencies related to model complexity and the choice of the misfit function generally have a greater impact on the retrieval of model Zn uptake behaviour than does the limitation of data coverage.
Yoshikazu Sasai, Sherwood Lan Smith, Eko Siswanto, Hideharu Sasaki, and Masami Nonaka
Biogeosciences, 19, 4865–4882, https://doi.org/10.5194/bg-19-4865-2022, https://doi.org/10.5194/bg-19-4865-2022, 2022
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We have investigated the adaptive response of phytoplankton growth to changing light, nutrients, and temperature over the North Pacific using two physical-biological models. We compare modeled chlorophyll and primary production from an inflexible control model (InFlexPFT), which assumes fixed carbon (C):nitrogen (N):chlorophyll (Chl) ratios, to a recently developed flexible phytoplankton functional type model (FlexPFT), which incorporates photoacclimation and variable C:N:Chl ratios.
Jens Terhaar, Thomas L. Frölicher, and Fortunat Joos
Biogeosciences, 19, 4431–4457, https://doi.org/10.5194/bg-19-4431-2022, https://doi.org/10.5194/bg-19-4431-2022, 2022
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Estimates of the ocean sink of anthropogenic carbon vary across various approaches. We show that the global ocean carbon sink can be estimated by three parameters, two of which approximate the ocean ventilation in the Southern Ocean and the North Atlantic, and one of which approximates the chemical capacity of the ocean to take up carbon. With observations of these parameters, we estimate that the global ocean carbon sink is 10 % larger than previously assumed, and we cut uncertainties in half.
Natasha René van Horsten, Hélène Planquette, Géraldine Sarthou, Thomas James Ryan-Keogh, Nolwenn Lemaitre, Thato Nicholas Mtshali, Alakendra Roychoudhury, and Eva Bucciarelli
Biogeosciences, 19, 3209–3224, https://doi.org/10.5194/bg-19-3209-2022, https://doi.org/10.5194/bg-19-3209-2022, 2022
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The remineralisation proxy, barite, was measured along 30°E in the southern Indian Ocean during early austral winter. To our knowledge this is the first reported Southern Ocean winter study. Concentrations throughout the water column were comparable to observations during spring to autumn. By linking satellite primary production to this proxy a possible annual timescale is proposed. These findings also suggest possible carbon remineralisation from satellite data on a basin scale.
Zhibo Shao and Ya-Wei Luo
Biogeosciences, 19, 2939–2952, https://doi.org/10.5194/bg-19-2939-2022, https://doi.org/10.5194/bg-19-2939-2022, 2022
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Non-cyanobacterial diazotrophs (NCDs) may be an important player in fixing N2 in the ocean. By conducting meta-analyses, we found that a representative marine NCD phylotype, Gamma A, tends to inhabit ocean environments with high productivity, low iron concentration and high light intensity. It also appears to be more abundant inside cyclonic eddies. Our study suggests a niche differentiation of NCDs from cyanobacterial diazotrophs as the latter prefers low-productivity and high-iron oceans.
Coraline Leseurre, Claire Lo Monaco, Gilles Reverdin, Nicolas Metzl, Jonathan Fin, Claude Mignon, and Léa Benito
Biogeosciences, 19, 2599–2625, https://doi.org/10.5194/bg-19-2599-2022, https://doi.org/10.5194/bg-19-2599-2022, 2022
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Decadal trends of fugacity of CO2 (fCO2), total alkalinity (AT), total carbon (CT) and pH in surface waters are investigated in different domains of the southern Indian Ocean (45°S–57°S) from ongoing and station observations regularly conducted in summer over the period 1998–2019. The fCO2 increase and pH decrease are mainly driven by anthropogenic CO2 estimated just below the summer mixed layer, as well as by a warming south of the polar front or in the fertilized waters near Kerguelen Island.
Priscilla Le Mézo, Jérôme Guiet, Kim Scherrer, Daniele Bianchi, and Eric Galbraith
Biogeosciences, 19, 2537–2555, https://doi.org/10.5194/bg-19-2537-2022, https://doi.org/10.5194/bg-19-2537-2022, 2022
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This study quantifies the role of commercially targeted fish biomass in the cycling of three important nutrients (N, P, and Fe), relative to nutrients otherwise available in water and to nutrients required by primary producers, and the impact of fishing. We use a model of commercially targeted fish biomass constrained by fish catch and stock assessment data to assess the contributions of fish at the global scale, at the time of the global peak catch and prior to industrial fishing.
Rebecca Chmiel, Nathan Lanning, Allison Laubach, Jong-Mi Lee, Jessica Fitzsimmons, Mariko Hatta, William Jenkins, Phoebe Lam, Matthew McIlvin, Alessandro Tagliabue, and Mak Saito
Biogeosciences, 19, 2365–2395, https://doi.org/10.5194/bg-19-2365-2022, https://doi.org/10.5194/bg-19-2365-2022, 2022
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Dissolved cobalt is present in trace amounts in seawater and is a necessary nutrient for marine microbes. On a transect from the Alaskan coast to Tahiti, we measured seawater concentrations of dissolved cobalt. Here, we describe several interesting features of the Pacific cobalt cycle including cobalt sources along the Alaskan coast and Hawaiian vents, deep-ocean particle formation, cobalt activity in low-oxygen regions, and how our samples compare to a global biogeochemical model’s predictions.
Nicolas Metzl, Claire Lo Monaco, Coraline Leseurre, Céline Ridame, Jonathan Fin, Claude Mignon, Marion Gehlen, and Thi Tuyet Trang Chau
Biogeosciences, 19, 1451–1468, https://doi.org/10.5194/bg-19-1451-2022, https://doi.org/10.5194/bg-19-1451-2022, 2022
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During an oceanographic cruise conducted in January 2020 in the south-western Indian Ocean, we observed very low CO2 concentrations associated with a strong phytoplankton bloom that occurred south-east of Madagascar. This biological event led to a strong regional CO2 ocean sink not previously observed.
Cited articles
Adam, B., Klawonn, I., Svedén, J. B., Bergkvist, J., Nahar, N., Walve,
J., Littmann, S., Whitehouse, M. J., Lavik, G., and Kuypers, M. M.:
N2-fixation, ammonium release and N-transfer to the microbial and
classical food web within a plankton community, ISME J., 10, 450–459,
https://doi.org/10.1038/ismej.2015.126, 2015.
Bell, P. R. and Fu, F.-X.: Effect of light on growth, pigmentation and
N2 fixation of cultured Trichodesmium sp. from the Great
Barrier Reef lagoon, Hydrobiologia, 543, 25–35,
https://doi.org/10.1007/s10750-004-5713-2, 2005.
Benavides, M., Bronk, D. A., Agawin, N. S., Pérez-Hernández, M. D.,
Hernández-Guerra, A., and Arístegui, J.: Longitudinal variability of
size-fractionated N2 fixation and DON release rates along
24.5∘ N in the subtropical North Atlantic, J. Geophys. Res., 118,
3406–3415, https://doi.org/10.1002/jgrc.20253, 2013.
Bergman, B., Sandh, G., Lin, S., Larsson, J., and Carpenter, E. J.:
Trichodesmium – a widespread marine cyanobacterium with unusual
nitrogen fixation properties, FEMS Microbiol. Rev., 37, 286–302,
https://doi.org/10.1111/j.1574-6976.2012.00352.x, 2013.
Berthelot, H., Bonnet, S., Camps, M., Grosso, O., and Moutin, T.: Assessment
of the dinitrogen released as ammonium and dissolved organic nitrogen by
unicellular and filamentous marine diazotrophic cyanobacteria grown in
culture, Front. Mar. Sci., 2, 80, https://doi.org/10.3389/fmars.2015.00080,
2015.
Berthelot, H., Bonnet, S., Grosso, O., Cornet, V., and Barani, A.: Transfer
of diazotroph-derived nitrogen towards non-diazotrophic planktonic
communities: a comparative study between Trichodesmium erythraeum,
Crocosphaera watsonii and Cyanothece sp., Biogeosciences,
13, 4005–4021, https://doi.org/10.5194/bg-13-4005-2016, 2016.
Bonnet, S., Berthelot, H., Turk-Kubo, K., Cornet-Barthaux, V., Fawcett, S.,
Berman-Frank, I., Barani, A., Grégori, G., Dekaezemacker, J., and
Benavides, M.: Diazotroph derived nitrogen supports diatom growth in the
South West Pacific: a quantitative study using nanoSIMS, Limnol. Oceanogr.,
61, 1549–1562, https://doi.org/10.1002/lno.10300, 2016a.
Bonnet, S., Baklouti, M., Gimenez, A., Berthelot, H., and Berman-Frank, I.:
Biogeochemical and biological impacts of diazotroph blooms in a low-nutrient,
low-chlorophyll ecosystem: synthesis from the VAHINE mesocosm experiment (New
Caledonia), Biogeosciences, 13, 4461–4479,
https://doi.org/10.5194/bg-13-4461-2016, 2016b.
Bonnet, S., Berthelot, H., Turk-Kubo, K., Fawcett, S., Rahav, E., L'Helguen,
S., and Berman-Frank, I.: Dynamics of N2 fixation and fate of
diazotroph-derived nitrogen in a low-nutrient, low-chlorophyll ecosystem:
results from the VAHINE mesocosm experiment (New Caledonia), Biogeosciences,
13, 2653–2673, https://doi.org/10.5194/bg-13-2653-2016, 2016c.
Böttjer, D., Dore, J. E., Karl, D. M., Letelier, R. M., Mahaffey, C.,
Wilson, S. T., Zehr, J., and Church, M. J.: Temporal variability of nitrogen
fixation and particulate nitrogen export at Station ALOHA, Limnol. Oceanogr.,
62, 200–216, https://doi.org/10.1002/lno.10386, 2016.
Breitbarth, E., Wohlers, J., Kläs, J., LaRoche, J., and Peeken, I.:
Nitrogen fixation and growth rates of Trichodesmium IMS-101 as a
function of light intensity, Mar. Ecol.-Prog. Ser, 359, 25–36,
https://doi.org/10.3354/meps07241, 2008.
Capone, D. G., Ferrier, M. D., and Carpenter, E. J.: Amino acid cycling in
colonies of the planktonic marine cyanobacterium Trichodesmium thiebautii, Appl. Environ. Microb., 60, 3989–3995, 1994.
Capone, D. G., Zehr, J. P., Paerl, H. W., Bergman, B., and Carpenter, E. J.:
Trichodesmium, a globally significant marine cyanobacterium,
Science, 276, 1221–1229, https://doi.org/10.1126/science.276.5316.1221, 1997.
Capone, D. G., Burns, J. A., Montoya, J. P., Subramaniam, A., Mahaffey, C.,
Gunderson, T., Michaels, A. F., and Carpenter, E. J.: Nitrogen fixation by
Trichodesmium spp.: An important source of new nitrogen to the
tropical and subtropical North Atlantic Ocean, Global BIogeochem. Cy., 19,
GB2024, https://doi.org/10.1029/2004GB002331, 2005.
Carpenter, E. J. and Price, C. C.: Nitrogen Fixation, Distribution, and
Production of Oscillatoria (Trichodesmium) Spp. in the
Western Sargasso and Caribbean Seas, Limnol. Oceanogr., 22, 60–72,
https://doi.org/10.4319/lo.1977.22.1.0060, 1977.
Carpenter, E. J. and Roenneberg, T.: The marine planktonic cyanobacteria
Trichodesmium spp.: photosynthetic rate measurements in the SW
Atlantic Ocean, Mar. Ecol.-Prog. Ser., 118, 267–273, https://doi.org/10.3354/meps118267,
1995.
Carpenter, E. J., ONeil, J. M., Dawson, R., Capone, D. G., Siddiqui, P. J.
A., Roenneberg, T., and Bergman, B.: The tropical diazotrophic phytoplankter
Trichodesmium: biological characteristics of two common species,
Mar. Ecol.-Prog. Ser, 95, 295–304, https://doi.org/10.3354/meps095295, 1993.
Church, M. J., Jenkins, B. D., Karl, D. M., and Zehr, J. P.: Vertical
distributions of nitrogen-fixing phylotypes at Stn ALOHA in the oligotrophic
North Pacific Ocean, Aquat. Microb. Ecol., 38, 3–14, https://doi.org/10.3354/ame038003,
2005a.
Church, M. J., Short, C. M., Jenkins, B. D., Karl, D. M., and Zehr, J. P.:
Temporal patterns of nitrogenase gene (nifH) expression in the
oligotrophic North Pacific Ocean, Appl. Environ. Microb., 71, 5362–5370,
https://doi.org/10.1128/AEM.71.9.5362-5370.2005, 2005b.
Dabundo, R., Lehmann, M. F., Treibergs, L., Tobias, C. R., Altabet, M. A.,
Moisander, P. H., and Granger, J.: The Contamination of Commercial
15N2 Gas Stocks with 15N–Labeled Nitrate and Ammonium and
Consequences for Nitrogen Fixation Measurements, PloS one, 9, e110335,
https://doi.org/10.1371/journal.pone.0110335, 2014.
Devassy, V. P., Bhattathiri, P. M. A., and Qasim, S. Z.:
Trichodesmium phenomenon, Indian J. Mar. Sci., 7, 168–186, 1978.
Fennel, K., Spitz, Y. H., Letelier, R. M., Abbott, M. R., and Karl, D. M.: A
deterministic model for N2 fixation at stn. ALOHA in the subtropical
North Pacific Ocean, Deep-Sea Res. Pt. II, 49, 149–174,
https://doi.org/10.1016/S0967-0645(01)00098-4, 2001.
Fernández, A., Graña, R., Mourino-Carballido, B., Bode, A., Varela,
M., Domínguez-Yanes, J. F., Escánez, J., de Armas, D., and
Marañón, E.: Community N2 fixation and Trichodesmium spp. abundance along longitudinal gradients in the eastern subtropical North
Atlantic, ICES J. Mar. Sci., 70, 223–231, https://doi.org/10.1093/icesjms/fss142, 2013.
Finzi-Hart, J. A., Pett-Ridge, J., Weber, P. K., Popa, R., Fallon, S. J.,
Gunderson, T., Hutcheon, I. D., Nealson, K. H., and Capone, D. G.: Fixation
and fate of C and N in the cyanobacterium Trichodesmium using
nanometer-scale secondary ion mass spectrometry, P. Natl. Acad. Sci. USA,
106, 6345–6350, https://doi.org/10.1073/pnas.0810547106, 2009.
Gandhi, N., Singh, A., Prakash, S., Ramesh, R., Raman, M., Sheshshayee, M.,
and Shetye, S.: First direct measurements of N2 fixation during a
Trichodesmium bloom in the eastern Arabian Sea, Global Biogeochem.
Cy., 25, GB4014, https://doi.org/10.1029/2010GB003970, 2011.
Garside, C.: A chemiluminescent technique for the determination of nanomolar
concentrations of nitrate and nitrite in seawater, Mar. Chem., 11, 159–167,
https://doi.org/10.1016/0304-4203(82)90039-1, 1982.
Glibert, P. M. and Bronk, D. A.: Release of dissolved organic nitrogen by
marine diazotrophic cyanobacteria, Trichodesmium spp., Appl.
Environ. Microb., 60, 3996–4000, https://doi.org/10.3354/ame01621, 1994.
Hama, T., Miyazaki, T., Ogawa, Y., Iwakuma, T., Takahashi, M., Otsuki, A.,
and Ichimura, S.: Measurement of photosynthetic production of a marine
phytoplankton population using a stable 13C isotope, Mar. Biol., 73,
31–36, https://doi.org/10.1007/BF00396282, 1983.
Hewson, I., Govil, S. R., Capone, D. G., Carpenter, E. J., and Fuhrman, J.
A.: Evidence of Trichodesmium viral lysis and potential significance
for biogeochemical cycling in the oligotrophic ocean, Aquat. Microb. Ecol.,
36, 1–8, https://doi.org/10.3354/ame036001, 2004.
Holl, C. M., Villareal, T. A., Payne, C. D., Clayton, T. D., Hart, C., and
Montoya, J. P.: Trichodesmium in the western Gulf of Mexico:
15N2-fixation and natural abundance stable isotopic evidence,
Limnol. Oceanogr., 52, 2249–2259, https://doi.org/10.4319/lo.2007.52.5.2249, 2007.
Hood, R. R., Bates, N. R., Capone, D. G., and Olson, D. B.: Modeling the
effect of nitrogen fixation on carbon and nitrogen fluxes at BATS, Deep-Sea
Res. Pt. II, 48, 1609–1648, https://doi.org/10.1016/S0967-0645(00)00160-0, 2001.
Kana, T. M.: Rapid oxygen cycling in Trichodesmium thiebautii,
Limnol. Oceanogr., 38, 18–24, https://doi.org/10.4319/lo.1993.38.1.0018, 1993.
Karl, D., Letelier, R., Tupas, L., Dore, J., Christian, J., and Hebel, D. V.:
The role of nitrogen fixation in biogeochemical cycling in the subtropical
North Pacific Ocean, Nature, 388, 533–538, 1997.
Karl, D. M., Letelier, R., Hebel, D. V., Bird, D. F., and Winn, C. D.:
Trichodesmium blooms and new nitrogen in the North Pacific Gyre,
Kluwer Academic Publishers, Dordrecht, 1992.
Knapp, A. N., Sigman, D. M., and Lipschultz, F.: N isotopic composition of
dissolved organic nitrogen and nitrate at the Bermuda Atlantic Time-series
Study site, Global Biogeochem. Cy., 19, GB1018, https://doi.org/10.1029/2004GB002320,
2005.
Knapp, A. N., Fawcett, S. E., Martínez-Garcia, A., Leblond, N., Moutin,
T., and Bonnet, S.: Nitrogen isotopic evidence for a shift from nitrate- to
diazotroph-fueled export production in the VAHINE mesocosm experiments,
Biogeosciences, 13, 4645–4657, https://doi.org/10.5194/bg-13-4645-2016,
2016.
Konno, U., Tsunogai, U., Komatsu, D. D., Daita, S., Nakagawa, F., Tsuda, A.,
Matsui, T., Eum, Y.-J., and Suzuki, K.: Determination of total N2 fixation
rates in the ocean taking into account both the particulate and filtrate
fractions, Biogeosciences, 7, 2369–2377,
https://doi.org/10.5194/bg-7-2369-2010, 2010.
Kranz, S. A., Eichner, M., and Rost, B.: Interactions between CCM and N2
fixation in Trichodesmium, Photosynth. Res., 109, 73–84, 2011.
Kumar, P. K., Singh, A., Ramesh, R., and Nallathambi, T.: N2 Fixation in
the Eastern Arabian Sea: Probable Role of Heterotrophic Diazotrophs, Front.
Mar. Sci., 4, 80, https://doi.org/10.3389/fmars.2017.00080, 2017.
LaRoche, J. and Breitbarth, E.: Importance of the diazotrophs as a source of
new nitrogen in the ocean, J. Sea Res., 53, 67–91,
https://doi.org/10.1016/j.seares.2004.05.005, 2005.
Lenes, J. M., Darrow, B. P., Cattrall, C., Heil, C. A., Callahan, M., Vargo,
G. A., Byrne, R. H., Prospero, J. M., Bates, D. E., and Fanning, K. A.: Iron
fertilization and the Trichodesmium response on the West Florida
shelf, Limnol. Oceanogr., 46, 1261–1277, https://doi.org/10.4319/lo.2001.46.6.1261,
2001.
Lewis, M. R., Ulloa, O., and Platt, T.: Photosynthetic action, absorption,
and quantum yield spectra for a natural population of Oscillatoria
in the North Atlantic, Limnol. Oceanogr., 33, 92–98,
https://doi.org/10.4319/lo.1988.33.1.0092, 1988.
Luo, Y.-W., Lima, I. D., Karl, D. M., Deutsch, C. A., and Doney, S. C.:
Data-based assessment of environmental controls on global marine nitrogen
fixation, Biogeosciences, 11, 691–708,
https://doi.org/10.5194/bg-11-691-2014, 2014.
Ma, J., Yuan, D., and Liang, Y.: Sequential injection analysis of nanomolar
soluble reactive phosphorus in seawater with HLB solid phase extraction, Mar.
Chem., 111, 151–159, https://doi.org/10.1016/j.marchem.2008.04.011, 2008.
Martínez-Pérez, C., Mohr, W., Löscher, C. R., Dekaezemacker, J.,
Littmann, S., Yilmaz, P., Lehnen, N., Fuchs, B. M., Lavik, G., and Schmitz,
R. A.: The small unicellular diazotrophic symbiont, UCYN-A, is a key player
in the marine nitrogen cycle, Nat. Microbiol., 1, 16163,
https://doi.org/10.1038/NMICROBIOL.2016.163, 2016.
Massana, R., Murray, A. E., Preston, C. M., and DeLong, E. F.: Vertical
distribution and phylogenetic characterization of marine planktonic Archaea
in the Santa Barbara Channel, Appl. Environ. Microb., 63, 50–56, 1997.
Mohr, W., Grosskopf, T., Wallace, D. W. R., and LaRoche, J.: Methodological
underestimation of oceanic nitrogen fixation rates, PloS one, 5, e12583,
https://doi.org/10.1371/journal.pone.0012583, 2010.
Montoya, J. P., Voss, M., Kahler, P., and Capone, D. G.: A Simple,
High-Precision, High-Sensitivity Tracer Assay for N2 Fixation, Appl.
Environ. Microb., 62, 986–993, 1996.
Mourino-Carballido, B., Graña, R., Fernández, A., Bode, A., Varela,
M., Domínguez, J., Escánez, J., de Armas, D., and Marañón,
E.: Importance of N2 fixation vs. nitrate eddy diffusion along a
latitudinal transect in the Atlantic Ocean, Limnol. Oceanogr., 56, 999–1007,
https://doi.org/10.4319/lo.2011.56.3.0999, 2011.
Mulholland, M. R.: The fate of nitrogen fixed by diazotrophs in the ocean,
Biogeosciences, 4, 37–51, https://doi.org/10.5194/bg-4-37-2007, 2007.
Mulholland, M. R., Ohki, K., and Capone, D. G.: Nitrogen utilization and
metabolism relative to patterns of N2 fixation in cultures of
Trichodesmium NIBB1067, J. Phycol, 35, 977–988,
https://doi.org/10.1046/j.1529-8817.1999.3550977.x, 1999.
Mulholland, M. R., Bronk, D. A., and Capone, D. G.: Dinitrogen fixation and
release of ammonium and dissolved organic nitrogen by Trichodesmium
IMS101, Aquat. Microb. Ecol., 37, 85–94, https://doi.org/10.3354/ame037085, 2004.
Mulholland, M. R., Bernhardt, P. W., Heil, C. A., Bronk, D. A., and O'Neil,
J. M.: Nitrogen fixation and release of fixed nitrogen by
Trichodesmium spp. in the Gulf of Mexico, Limnol. Oceanogr., 51,
1762–1776, https://doi.org/10.4319/lo.2006.51.4.1762, 2006.
O'Neil, J. M., Metzler, P. M., and Glibert, P. M.: Ingestion of
15N2-labelled Trichodesmium spp. and ammonium regeneration
by the harpacticoid copepod Macrosetella gracilis, Mar. Biol., 125,
89–96, https://doi.org/10.1007/BF00350763, 1996.
Oliver, R. L., Hamilton, D. P., Brookes, J. D., and Ganf, G. G.: Physiology,
blooms and prediction of planktonic cyanobacteria, in: Ecology of
cyanobacteria II, Springer, the Netherlands, 155–194, 2012.
Rijkenberg, M. J., Langlois, R. J., Mills, M. M., Patey, M. D., Hill, P. G.,
Nielsdóttir, M. C., Compton, T. J., LaRoche, J., and Achterberg, E. P.:
Environmental forcing of nitrogen fixation in the eastern tropical and
sub-tropical North Atlantic Ocean, PLoS One, 6, e28989,
https://doi.org/10.1371/journal.pone.0028989, 2011.
Shi, T., Sun, Y., and Falkowski, P. G.: Effects of iron limitation on the
expression of metabolic genes in the marine cyanobacterium
Trichodesmium erythraeum IMS101, Environ. Microbiol., 9, 2945–2956,
https://doi.org/10.1111/j.1462-2920.2007.01406.x, 2007.
Shiozaki, T., Furuya, K., Kodama, T., Kitajima, S., Takeda, S., Takemura, T.,
and Kanda, J.: New estimation of N2 fixation in the western and central
Pacific Ocean and its marginal seas, Global Biogeochem. Cy., 24, GB1015,
https://doi.org/10.1029/2009GB003620, 2010.
Shiozaki, T., Nagata, T., Ijichi, M., and Furuya, K.: Nitrogen fixation and
the diazotroph community in the temperate coastal region of the northwestern
North Pacific, Biogeosciences, 12, 4751–4764,
https://doi.org/10.5194/bg-12-4751-2015, 2015.
Sigman, D., Casciotti, K., Andreani, M., Barford, C., Galanter, M., and
Böhlke, J.: A bacterial method for the nitrogen isotopic analysis of
nitrate in seawater and freshwater, Anal. Chem., 73, 4145–4153,
https://doi.org/10.1021/ac010088e, 2001.
Villareal, T. A. and Carpenter, E. J.: Diel buoyancy regulation in the marine
diazotrophic cyanobacterium Trichodesmium thiebautii, Limnol.
Oceanogr., 35, 1832–1837, https://doi.org/10.4319/lo.1990.35.8.1832, 1990.
Wannicke, N., Koch, B. P., and Voss, M.: Release of fixed N2 and C as
dissolved compounds by Trichodesmium erythreum and Nodularia spumigena under the influence of high light and high nutrient (P), Aquat.
Microb. Ecol., 57, 175–189, https://doi.org/10.3354/ame01343, 2009.
Webb, W. L., Newton, M., and Starr, D.: Carbon dioxide exchange of
Alnus rubra: a mathmatical model, Oecologia, 17, 281–291,
https://doi.org/10.1007/BF00345747, 1974.
Welschmeyer, N. A.: Fluorometric analysis of chlorophyll a in the presence
of chlorophyll b and pheopigments, Limnol. Oceanogr., 39, 1985–1992,
https://doi.org/10.1007/BF02026767, 1994.
Zehr, J. P.: Nitrogen fixation by marine cyanobacteria, Trends Microbiol.,
19, 162–173, https://doi.org/10.1016/j.tim.2010.12.004, 2011.
Zehr, J. P., Shilova, I. N., Farnelid, H. M., del Carmen
Muñoz-MarínCarmen, M., and Turk-Kubo, K. A.: Unusual marine
unicellular symbiosis with the nitrogen-fixing cyanobacterium UCYN-A, Nat.
Microbiol., 2, 16214, https://doi.org/10.1038/nmicrobiol.2016.214, 2016.
Zhang, Y., Zhao, Z., Sun, J., and Jiao, N.: Diversity and distribution of
diazotrophic communities in the South China Sea deep basin with mesoscale
cyclonic eddy perturbations, FEMS Microbiol. Ecol., 78, 417–427,
https://doi.org/10.1111/j.1574-6941.2011.01174.x, 2011.
Short summary
We investigated the light response of field Trichodesmium N2 fixation and net dissolved nitrogen release behavior. Our results suggest that N2 fixation was a function of light intensity, and the light requirement of Trichodesmium nitrogen fixation was high relative to its photosynthetic light demand. Meanwhile, light is a crucial parameter driving the physiological state of Trichodesmium, which subsequently determined the C / N metabolism and net dissolved nitrogen release.
We investigated the light response of field Trichodesmium N2 fixation and net dissolved nitrogen...
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