Articles | Volume 16, issue 10
https://doi.org/10.5194/bg-16-2181-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-16-2181-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
24 May 2019
Research article |
| 24 May 2019
| 24 May 2019
Identification of secondary fatty alcohols in atmospheric aerosols in temperate forests
Institute of Low Temperature Science, Hokkaido University, Sapporo,
060-0819, Japan
Divyavani Gowda
Institute of Low Temperature Science, Hokkaido University, Sapporo,
060-0819, Japan
now at: RIKEN Center for Integrative Medical Science, Yokohama,
230-0045, Japan
Eri Tachibana
Institute of Low Temperature Science, Hokkaido University, Sapporo,
060-0819, Japan
Yoshiyuki Takahashi
National Institute for Environmental Studies, Tsukuba, 305-8506, Japan
Tsutom Hiura
Field Science Center for Northern Biosphere, Hokkaido University,
Tomakomai, 053-0035, Japan
Related authors
Riku Miyase, Yuzo Miyazaki, Tomohisa Irino, and Youhei Yamashita
EGUsphere, https://doi.org/10.5194/egusphere-2025-2525, https://doi.org/10.5194/egusphere-2025-2525, 2025
Short summary
Short summary
Water-soluble pyrogenic carbon (WSPyC) is long-lived in the ocean and plays a role in regulating climate. This study observed the variations in concentration and sources of WSPyC in atmospheric aerosols. The results suggest that WSPyC can form through the oxidation of soot during atmospheric transport, highlighting this process as an important pathway before aerosols are deposited into the ocean.
Yuzo Miyazaki, Yunhan Wang, Eri Tachibana, Koji Suzuki, Youhei Yamashita, and Jun Nishioka
EGUsphere, https://doi.org/10.5194/egusphere-2025-2689, https://doi.org/10.5194/egusphere-2025-2689, 2025
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
Short summary
Short summary
It is essential to understand how biologically productive oceanic regions during spring phytoplankton blooms after sea ice melting contribute to the sea-to-air emission flux of atmospheric organic aerosols (OAs) in the subarctic oceans. Our shipboard measurements highlight the preferential formation of N-containing secondary water-soluble OAs associated with the predominant diatoms including ice algae during the bloom after sea ice melting/retreat in the subarctic ocean.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
Short summary
Short summary
Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Jinyoung Jung, Yuzo Miyazaki, Jin Hur, Yun Kyung Lee, Mi Hae Jeon, Youngju Lee, Kyoung-Ho Cho, Hyun Young Chung, Kitae Kim, Jung-Ok Choi, Catherine Lalande, Joo-Hong Kim, Taejin Choi, Young Jun Yoon, Eun Jin Yang, and Sung-Ho Kang
Atmos. Chem. Phys., 23, 4663–4684, https://doi.org/10.5194/acp-23-4663-2023, https://doi.org/10.5194/acp-23-4663-2023, 2023
Short summary
Short summary
This study examined the summertime fluorescence properties of water-soluble organic carbon (WSOC) in aerosols over the western Arctic Ocean. We found that the WSOC in fine-mode aerosols in coastal areas showed a higher polycondensation degree and aromaticity than in sea-ice-covered areas. The fluorescence properties of atmospheric WSOC in the summertime marine Arctic boundary can improve our understanding of the WSOC chemical and biological linkages at the ocean–sea-ice–atmosphere interface.
Tsukasa Dobashi, Yuzo Miyazaki, Eri Tachibana, Kazutaka Takahashi, Sachiko Horii, Fuminori Hashihama, Saori Yasui-Tamura, Yoko Iwamoto, Shu-Kuan Wong, and Koji Hamasaki
Biogeosciences, 20, 439–449, https://doi.org/10.5194/bg-20-439-2023, https://doi.org/10.5194/bg-20-439-2023, 2023
Short summary
Short summary
Water-soluble organic nitrogen (WSON) in marine aerosols is important for biogeochemical cycling of bioelements. Our shipboard measurements suggested that reactive nitrogen produced and exuded by nitrogen-fixing microorganisms in surface seawater likely contributed to the formation of WSON aerosols in the subtropical North Pacific. This study provides new implications for the role of marine microbial activity in the formation of WSON aerosols in the ocean surface.
Yange Deng, Hiroaki Fujinari, Hikari Yai, Kojiro Shimada, Yuzo Miyazaki, Eri Tachibana, Dhananjay K. Deshmukh, Kimitaka Kawamura, Tomoki Nakayama, Shiori Tatsuta, Mingfu Cai, Hanbing Xu, Fei Li, Haobo Tan, Sho Ohata, Yutaka Kondo, Akinori Takami, Shiro Hatakeyama, and Michihiro Mochida
Atmos. Chem. Phys., 22, 5515–5533, https://doi.org/10.5194/acp-22-5515-2022, https://doi.org/10.5194/acp-22-5515-2022, 2022
Short summary
Short summary
Offline analyses of the hygroscopicity and composition of atmospheric aerosols are complementary to online analyses in view of the applicability to broader sizes, specific compound groups, and investigations at remote sites. This offline study characterized the composition of water-soluble matter in aerosols and their humidity-dependent hygroscopicity on Okinawa, a receptor site of East Asian outflow. Further, comparison with online analyses showed the appropriateness of the offline method.
Sharmine Akter Simu, Yuzo Miyazaki, Eri Tachibana, Henning Finkenzeller, Jérôme Brioude, Aurélie Colomb, Olivier Magand, Bert Verreyken, Stephanie Evan, Rainer Volkamer, and Trissevgeni Stavrakou
Atmos. Chem. Phys., 21, 17017–17029, https://doi.org/10.5194/acp-21-17017-2021, https://doi.org/10.5194/acp-21-17017-2021, 2021
Short summary
Short summary
The tropical Indian Ocean (IO) is expected to be a significant source of water-soluble organic carbon (WSOC), which is relevant to cloud formation. Our study showed that marine secondary organic formation dominantly contributed to the aerosol WSOC mass at the high-altitude observatory in the southwest IO in the wet season in both marine boundary layer and free troposphere (FT). This suggests that the effect of marine secondary sources is important up to FT, a process missing in climate models.
Tomoki Mochizuki, Kimitaka Kawamura, Yuzo Miyazaki, Bhagawati Kunwar, and Suresh Kumar Reddy Boreddy
Atmos. Chem. Phys., 19, 2421–2432, https://doi.org/10.5194/acp-19-2421-2019, https://doi.org/10.5194/acp-19-2421-2019, 2019
Short summary
Short summary
Monocarboxylic acids (MCAs) in gases and particles were measured in deciduous forest. Formic acid in the gas phase and isopentanoic acid in the particle phase were dominant MCAs. Gaseous normal monoacids showed positive correlations with isobutyric acid. Particulate isopentanoic acid showed a positive correlation with lactic acid. The florest floor with soil microbes contributes to emission of MCAs. Our results may be useful to improve understanding of organic aerosol formation in the forest.
Yuzo Miyazaki, Sean Coburn, Kaori Ono, David T. Ho, R. Bradley Pierce, Kimitaka Kawamura, and Rainer Volkamer
Atmos. Chem. Phys., 16, 7695–7707, https://doi.org/10.5194/acp-16-7695-2016, https://doi.org/10.5194/acp-16-7695-2016, 2016
Short summary
Short summary
We conducted a WSOC-specific 13C analysis of submicron marine aerosols over the eastern equatorial Pacific for the first time. The analysis of 13C combined with monosaccharides provides evidence of a significant contribution of marine dissolved organic carbon (DOC) to submicron particles in the MBL regardless of the oceanic area. The study demonstrates that DOC is closely correlated with the submicron WSOC and implies that it may characterize background OA in the MBL over the study region.
T. Mochizuki, Y. Miyazaki, K. Ono, R. Wada, Y. Takahashi, N. Saigusa, K. Kawamura, and A. Tani
Atmos. Chem. Phys., 15, 12029–12041, https://doi.org/10.5194/acp-15-12029-2015, https://doi.org/10.5194/acp-15-12029-2015, 2015
Short summary
Short summary
Simultaneous measurements of concentrations and above-canopy fluxes of isoprene and α-pinene in a forest, along with their oxidation products in aerosols, suggest that the inflow of anthropogenic precursors/aerosols enhanced the formation of both isoprene- and α-pinene-derived secondary organic aerosol (SOA) within the forest canopy even when the flux was low. We also emphasize the role of vegetation/soils near the forest floor as important sources of isoprene and α-pinene in the forest.
Y. Miyazaki, M. Sawano, and K. Kawamura
Biogeosciences, 11, 4407–4414, https://doi.org/10.5194/bg-11-4407-2014, https://doi.org/10.5194/bg-11-4407-2014, 2014
Riku Miyase, Yuzo Miyazaki, Tomohisa Irino, and Youhei Yamashita
EGUsphere, https://doi.org/10.5194/egusphere-2025-2525, https://doi.org/10.5194/egusphere-2025-2525, 2025
Short summary
Short summary
Water-soluble pyrogenic carbon (WSPyC) is long-lived in the ocean and plays a role in regulating climate. This study observed the variations in concentration and sources of WSPyC in atmospheric aerosols. The results suggest that WSPyC can form through the oxidation of soot during atmospheric transport, highlighting this process as an important pathway before aerosols are deposited into the ocean.
Yuzo Miyazaki, Yunhan Wang, Eri Tachibana, Koji Suzuki, Youhei Yamashita, and Jun Nishioka
EGUsphere, https://doi.org/10.5194/egusphere-2025-2689, https://doi.org/10.5194/egusphere-2025-2689, 2025
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
Short summary
Short summary
It is essential to understand how biologically productive oceanic regions during spring phytoplankton blooms after sea ice melting contribute to the sea-to-air emission flux of atmospheric organic aerosols (OAs) in the subarctic oceans. Our shipboard measurements highlight the preferential formation of N-containing secondary water-soluble OAs associated with the predominant diatoms including ice algae during the bloom after sea ice melting/retreat in the subarctic ocean.
Masahito Ueyama, Yuta Takao, Hiromi Yazawa, Makiko Tanaka, Hironori Yabuki, Tomo’omi Kumagai, Hiroki Iwata, Md. Abdul Awal, Mingyuan Du, Yoshinobu Harazono, Yoshiaki Hata, Takashi Hirano, Tsutom Hiura, Reiko Ide, Sachinobu Ishida, Mamoru Ishikawa, Kenzo Kitamura, Yuji Kominami, Shujiro Komiya, Ayumi Kotani, Yuta Inoue, Takashi Machimura, Kazuho Matsumoto, Yojiro Matsuura, Yasuko Mizoguchi, Shohei Murayama, Hirohiko Nagano, Taro Nakai, Tatsuro Nakaji, Ko Nakaya, Shinjiro Ohkubo, Takeshi Ohta, Keisuke Ono, Taku M. Saitoh, Ayaka Sakabe, Takanori Shimizu, Seiji Shimoda, Michiaki Sugita, Kentaro Takagi, Yoshiyuki Takahashi, Naoya Takamura, Satoru Takanashi, Takahiro Takimoto, Yukio Yasuda, Qinxue Wang, Jun Asanuma, Hideo Hasegawa, Tetsuya Hiyama, Yoshihiro Iijima, Shigeyuki Ishidoya, Masayuki Itoh, Tomomichi Kato, Hiroaki Kondo, Yoshiko Kosugi, Tomonori Kume, Takahisa Maeda, Trofim Maximov, Ryo Moriwaki, Hiroyuki Muraoka, Roman Petrov, Jun Suzuki, Shingo Taniguchi, and Kazuhito Ichii
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2024-615, https://doi.org/10.5194/essd-2024-615, 2025
Revised manuscript accepted for ESSD
Short summary
Short summary
The JapanFlux2024 dataset, created through collaboration across Japan and East Asia, includes eddy covariance data from 79 sites spanning 652 site-years (1990–2023). This comprehensive dataset offers valuable insights into energy, water, and CO2 fluxes, supporting research on land-atmosphere interactions and process models. Compatible with FLUXNET, it fosters global collaboration and advances research in environmental science and regional climate dynamics.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
Short summary
Short summary
Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Jinyoung Jung, Yuzo Miyazaki, Jin Hur, Yun Kyung Lee, Mi Hae Jeon, Youngju Lee, Kyoung-Ho Cho, Hyun Young Chung, Kitae Kim, Jung-Ok Choi, Catherine Lalande, Joo-Hong Kim, Taejin Choi, Young Jun Yoon, Eun Jin Yang, and Sung-Ho Kang
Atmos. Chem. Phys., 23, 4663–4684, https://doi.org/10.5194/acp-23-4663-2023, https://doi.org/10.5194/acp-23-4663-2023, 2023
Short summary
Short summary
This study examined the summertime fluorescence properties of water-soluble organic carbon (WSOC) in aerosols over the western Arctic Ocean. We found that the WSOC in fine-mode aerosols in coastal areas showed a higher polycondensation degree and aromaticity than in sea-ice-covered areas. The fluorescence properties of atmospheric WSOC in the summertime marine Arctic boundary can improve our understanding of the WSOC chemical and biological linkages at the ocean–sea-ice–atmosphere interface.
Tsukasa Dobashi, Yuzo Miyazaki, Eri Tachibana, Kazutaka Takahashi, Sachiko Horii, Fuminori Hashihama, Saori Yasui-Tamura, Yoko Iwamoto, Shu-Kuan Wong, and Koji Hamasaki
Biogeosciences, 20, 439–449, https://doi.org/10.5194/bg-20-439-2023, https://doi.org/10.5194/bg-20-439-2023, 2023
Short summary
Short summary
Water-soluble organic nitrogen (WSON) in marine aerosols is important for biogeochemical cycling of bioelements. Our shipboard measurements suggested that reactive nitrogen produced and exuded by nitrogen-fixing microorganisms in surface seawater likely contributed to the formation of WSON aerosols in the subtropical North Pacific. This study provides new implications for the role of marine microbial activity in the formation of WSON aerosols in the ocean surface.
Yange Deng, Hiroaki Fujinari, Hikari Yai, Kojiro Shimada, Yuzo Miyazaki, Eri Tachibana, Dhananjay K. Deshmukh, Kimitaka Kawamura, Tomoki Nakayama, Shiori Tatsuta, Mingfu Cai, Hanbing Xu, Fei Li, Haobo Tan, Sho Ohata, Yutaka Kondo, Akinori Takami, Shiro Hatakeyama, and Michihiro Mochida
Atmos. Chem. Phys., 22, 5515–5533, https://doi.org/10.5194/acp-22-5515-2022, https://doi.org/10.5194/acp-22-5515-2022, 2022
Short summary
Short summary
Offline analyses of the hygroscopicity and composition of atmospheric aerosols are complementary to online analyses in view of the applicability to broader sizes, specific compound groups, and investigations at remote sites. This offline study characterized the composition of water-soluble matter in aerosols and their humidity-dependent hygroscopicity on Okinawa, a receptor site of East Asian outflow. Further, comparison with online analyses showed the appropriateness of the offline method.
Sharmine Akter Simu, Yuzo Miyazaki, Eri Tachibana, Henning Finkenzeller, Jérôme Brioude, Aurélie Colomb, Olivier Magand, Bert Verreyken, Stephanie Evan, Rainer Volkamer, and Trissevgeni Stavrakou
Atmos. Chem. Phys., 21, 17017–17029, https://doi.org/10.5194/acp-21-17017-2021, https://doi.org/10.5194/acp-21-17017-2021, 2021
Short summary
Short summary
The tropical Indian Ocean (IO) is expected to be a significant source of water-soluble organic carbon (WSOC), which is relevant to cloud formation. Our study showed that marine secondary organic formation dominantly contributed to the aerosol WSOC mass at the high-altitude observatory in the southwest IO in the wet season in both marine boundary layer and free troposphere (FT). This suggests that the effect of marine secondary sources is important up to FT, a process missing in climate models.
Tomoki Mochizuki, Kimitaka Kawamura, Yuzo Miyazaki, Bhagawati Kunwar, and Suresh Kumar Reddy Boreddy
Atmos. Chem. Phys., 19, 2421–2432, https://doi.org/10.5194/acp-19-2421-2019, https://doi.org/10.5194/acp-19-2421-2019, 2019
Short summary
Short summary
Monocarboxylic acids (MCAs) in gases and particles were measured in deciduous forest. Formic acid in the gas phase and isopentanoic acid in the particle phase were dominant MCAs. Gaseous normal monoacids showed positive correlations with isobutyric acid. Particulate isopentanoic acid showed a positive correlation with lactic acid. The florest floor with soil microbes contributes to emission of MCAs. Our results may be useful to improve understanding of organic aerosol formation in the forest.
Yuzo Miyazaki, Sean Coburn, Kaori Ono, David T. Ho, R. Bradley Pierce, Kimitaka Kawamura, and Rainer Volkamer
Atmos. Chem. Phys., 16, 7695–7707, https://doi.org/10.5194/acp-16-7695-2016, https://doi.org/10.5194/acp-16-7695-2016, 2016
Short summary
Short summary
We conducted a WSOC-specific 13C analysis of submicron marine aerosols over the eastern equatorial Pacific for the first time. The analysis of 13C combined with monosaccharides provides evidence of a significant contribution of marine dissolved organic carbon (DOC) to submicron particles in the MBL regardless of the oceanic area. The study demonstrates that DOC is closely correlated with the submicron WSOC and implies that it may characterize background OA in the MBL over the study region.
S. Kundu, K. Kawamura, M. Kobayashi, E. Tachibana, M. Lee, P. Q. Fu, and J. Jung
Atmos. Chem. Phys., 16, 585–596, https://doi.org/10.5194/acp-16-585-2016, https://doi.org/10.5194/acp-16-585-2016, 2016
Short summary
Short summary
Chemistry-transport models have predicted a change in secondary organic aerosols (SOA) in the future atmosphere with a large uncertainty. This study measures diacids, major water-soluble surrogates of SOA, on a sub-decadal scale in atmospheric aerosols in eastern Asia. Diacids are observed to increase by 3.9–47.4 % per year. The increases in the water-soluble organic acid fraction could modify the aerosol organic composition and its sensitivity to climate-relevant physical properties.
T. Mochizuki, Y. Miyazaki, K. Ono, R. Wada, Y. Takahashi, N. Saigusa, K. Kawamura, and A. Tani
Atmos. Chem. Phys., 15, 12029–12041, https://doi.org/10.5194/acp-15-12029-2015, https://doi.org/10.5194/acp-15-12029-2015, 2015
Short summary
Short summary
Simultaneous measurements of concentrations and above-canopy fluxes of isoprene and α-pinene in a forest, along with their oxidation products in aerosols, suggest that the inflow of anthropogenic precursors/aerosols enhanced the formation of both isoprene- and α-pinene-derived secondary organic aerosol (SOA) within the forest canopy even when the flux was low. We also emphasize the role of vegetation/soils near the forest floor as important sources of isoprene and α-pinene in the forest.
Y. Miyazaki, M. Sawano, and K. Kawamura
Biogeosciences, 11, 4407–4414, https://doi.org/10.5194/bg-11-4407-2014, https://doi.org/10.5194/bg-11-4407-2014, 2014
Related subject area
Biogeochemistry: Air - Land Exchange
Altered seasonal sensitivity of net ecosystem exchange to controls driven by nutrient balances in a semi-arid savanna
Peltigera lichen thalli produce highly potent ice-nucleating agents
Constraining 2010–2020 Amazonian carbon flux estimates with satellite solar-induced fluorescence (SIF)
An elucidatory model of oxygen's partial pressure inside substomatal cavities
Aggregation of ice-nucleating macromolecules from Betula pendula pollen determines ice nucleation efficiency
Quantifying the soil sink of atmospheric Hydrogen: a full year of field measurements from grassland and forest soils in the UK
Evaluating adsorption isotherm models for determining the partitioning of ammonium between soil and soil pore water in environmental soil samples
Similar freezing spectra of particles in plant canopies and in the air at a high-altitude site
Anticorrelation of net uptake of atmospheric CO2 by the world ocean and terrestrial biosphere in current carbon cycle models
Impact of meteorological conditions on the biogenic volatile organic compound (BVOC) emission rate from eastern Mediterranean vegetation under drought
Monitoring cropland daily carbon dioxide exchange at field scales with Sentinel-2 satellite imagery
Compound soil and atmospheric drought (CSAD) events and CO2 fluxes of a mixed deciduous forest: the occurrence, impact, and temporal contribution of main drivers
Potential of carbon uptake and local aerosol production in boreal and hemi-boreal ecosystems across Finland and in Estonia
The influence of plant water stress on vegetation–atmosphere exchanges: implications for ozone modelling
High interspecific variability in ice nucleation activity suggests pollen ice nucleators are incidental
Using automated machine learning for the upscaling of gross primary productivity
Interpretability of negative latent heat fluxes from eddy covariance measurements in dry conditions
Forest-floor respiration, N2O fluxes, and CH4 fluxes in a subalpine spruce forest: drivers and annual budgets
Enhanced net CO2 exchange of a semideciduous forest in the southern Amazon due to diffuse radiation from biomass burning
Observational relationships between ammonia, carbon dioxide and water vapor under a wide range of meteorological and turbulent conditions: RITA-2021 campaign
Environmental controls of winter soil carbon dioxide fluxes in boreal and tundra environments
Origin of secondary fatty alcohols in atmospheric aerosols in a cool–temperate forest based on their mass size distributions
Sap flow and leaf gas exchange response to a drought and heatwave in urban green spaces in a Nordic city
Changes in biogenic volatile organic compound emissions in response to the El Niño–Southern Oscillation
Rethinking the deployment of static chambers for CO2 flux measurement in dry desert soils
Lichen species across Alaska produce highly active and stable ice nucleators
A differentiable, physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Snow–vegetation–atmosphere interactions in alpine tundra
Synergy between TROPOMI sun-induced chlorophyll fluorescence and MODIS spectral reflectance for understanding the dynamics of gross primary productivity at Integrated Carbon Observatory System (ICOS) ecosystem flux sites
Atmospheric deposition of reactive nitrogen to a deciduous forest in the southern Appalachian Mountains
Tropical cyclones facilitate recovery of forest leaf area from dry spells in East Asia
Minor contributions of daytime monoterpenes are major contributors to atmospheric reactivity
Using atmospheric observations to quantify annual biogenic carbon dioxide fluxes on the Alaska North Slope
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part II: Modeling annual budgets
Growth and actual leaf temperature modulate CO2 responsiveness of monoterpene emissions from holm oak in opposite ways
Multi-year observations reveal a larger than expected autumn respiration signal across northeast Eurasia
Reviews and syntheses: VOC emissions from soil cover in boreal and temperate natural ecosystems of the Northern Hemisphere
Internal tree cycling and atmospheric archiving of mercury: examination with concentration and stable isotope analyses
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
CO2 and CH4 exchanges between moist moss tundra and atmosphere on Kapp Linné, Svalbard
Recent extreme drought events in the Amazon rainforest: assessment of different precipitation and evapotranspiration datasets and drought indicators
Variability and uncertainty in flux-site-scale net ecosystem exchange simulations based on machine learning and remote sensing: a systematic evaluation
Update of a biogeochemical model with process-based algorithms to predict ammonia volatilization from fertilized cultivated uplands and rice paddy fields
Massive warming-induced carbon loss from subalpine grassland soils in an altitudinal transplantation experiment
Climatic variation drives loss and restructuring of carbon and nitrogen in boreal forest wildfire
Gaps in network infrastructure limit our understanding of biogenic methane emissions for the United States
Changes of the aerodynamic characteristics of a flux site after an extensive windthrow
Carbon sequestration potential of street tree plantings in Helsinki
Technical note: Incorporating expert domain knowledge into causal structure discovery workflows
Sensitivity of biomass burning emissions estimates to land surface information
Laura Nadolski, Tarek S. El-Madany, Jacob Nelson, Arnaud Carrara, Gerardo Moreno, Richard Nair, Yunpeng Luo, Anke Hildebrandt, Victor Rolo, Markus Reichstein, and Sung-Ching Lee
Biogeosciences, 22, 2935–2958, https://doi.org/10.5194/bg-22-2935-2025, https://doi.org/10.5194/bg-22-2935-2025, 2025
Short summary
Short summary
Semi-arid ecosystems are crucial for Earth's carbon balance and are sensitive to changes in nitrogen (N) and phosphorus (P) levels. Their carbon dynamics are complex and not fully understood. We studied how long-term nutrient changes affect carbon exchange. In summer, the addition of N+P changed plant composition and productivity. In transitional seasons, carbon exchange was less weather-dependent with N. The addition of N and N+P increases carbon-exchange variability, driven by grass greenness.
Rosemary J. Eufemio, Galit Renzer, Mariah Rojas, Jolanta Miadlikowska, Todd L. Sformo, François Lutzoni, Boris A. Vinatzer, and Konrad Meister
Biogeosciences, 22, 2087–2096, https://doi.org/10.5194/bg-22-2087-2025, https://doi.org/10.5194/bg-22-2087-2025, 2025
Short summary
Short summary
Biological ice nucleation plays key roles in organism survival and in shaping Earth’s atmospheric patterns. Our pan-American screening of Peltigera lichens reveals that the lichen thalli produce highly active ice nucleators (INs) resistant to freeze–thaw cycles. Notably, a pure fungal culture from Peltigera britannica released the most potent INs reported to date. Given the global abundance of these lichens, the INs may be important contributors to atmospheric processes.
Archana Dayalu, Marikate Mountain, Bharat Rastogi, John B. Miller, and Luciana Gatti
Biogeosciences, 22, 1509–1528, https://doi.org/10.5194/bg-22-1509-2025, https://doi.org/10.5194/bg-22-1509-2025, 2025
Short summary
Short summary
The Amazon is facing unprecedented disturbance. Determining trends in Amazonia's carbon balance and its sensitivity to disturbance requires reliable vegetation models that adequately capture how its ecosystems exchange carbon with the atmosphere. Using ground- and satellite-based ecosystem products, we present an improved model of land–atmosphere vegetation carbon exchange across the Amazon. Our model agrees with independent aircraft observations from different locations.
Andrew S. Kowalski
Biogeosciences, 22, 785–789, https://doi.org/10.5194/bg-22-785-2025, https://doi.org/10.5194/bg-22-785-2025, 2025
Short summary
Short summary
The laws of physics show that leaf oxygen is not photosynthetically enriched but extremely dilute due to the overwhelming effects of humidification. This challenges the prevailing diffusion-only paradigm regarding leaf gas exchanges because non-diffusive transport is required. Such transport also explains why fluxes of carbon dioxide and water vapour become decoupled at very high temperatures, as has been observed but not explained by plant physiologists.
Florian Wieland, Nadine Bothen, Ralph Schwidetzky, Teresa M. Seifried, Paul Bieber, Ulrich Pöschl, Konrad Meister, Mischa Bonn, Janine Fröhlich-Nowoisky, and Hinrich Grothe
Biogeosciences, 22, 103–115, https://doi.org/10.5194/bg-22-103-2025, https://doi.org/10.5194/bg-22-103-2025, 2025
Short summary
Short summary
Betula pendula is a widespread birch tree species containing ice nucleation agents that can trigger the freezing of cloud droplets and thereby alter the evolution of clouds. Our study identifies three distinct ice-nucleating macromolecule (INM) aggregates of varying size that can nucleate ice at temperatures up to –5.4°C. Our findings suggest that these vegetation-derived particles may influence atmospheric processes, weather, and climate more strongly than previously thought.
Nicholas Cowan, Toby Roberts, Mark Hanlon, Aurelia Bezanger, Galina Toteva, Alex Tweedie, Karen Yeung, Ajinkya Deshpande, Peter Levy, Ute Skiba, Eiko Nemitz, and Julia Drewer
EGUsphere, https://doi.org/10.5194/egusphere-2024-3654, https://doi.org/10.5194/egusphere-2024-3654, 2024
Short summary
Short summary
We measured soil hydrogen (H2) fluxes from two field sites, a managed grassland and a planted deciduous woodland, with flux measurements of H2 covering full seasonal cycles. We estimate annual H2 uptake of -3.1 ± 0.1 and -12.0 ± 0.4 kg H2 ha-1 yr-1 for the grassland and woodland sites, respectively. Soil moisture was found to be the primary driver of H2 uptake, with the clay content of the soils providing a physical barrier which limited H2 uptake.
Matthew G. Davis, Kevin Yan, and Jennifer G. Murphy
Biogeosciences, 21, 5381–5392, https://doi.org/10.5194/bg-21-5381-2024, https://doi.org/10.5194/bg-21-5381-2024, 2024
Short summary
Short summary
Ammonia applied as fertilizer can volatilize into the atmosphere. This can threaten vulnerable ecosystems and human health. We investigated the partitioning of ammonia between an immobile adsorbed phase and mobile aqueous phase using several adsorption models. Using the Temkin model we determined that previous approaches to this issue may overestimate the quantity available for exchange by a factor of 5–20, suggesting that ammonia emissions from soil may be overestimated.
Annika Einbock and Franz Conen
Biogeosciences, 21, 5219–5231, https://doi.org/10.5194/bg-21-5219-2024, https://doi.org/10.5194/bg-21-5219-2024, 2024
Short summary
Short summary
A small fraction of particles found at great heights in the atmosphere can freeze cloud droplets at temperatures of ≥ −10 °C and thus influence cloud properties. We provide a novel type of evidence that plant canopies are a major source of such biological ice-nucleating particles in the air above the Alps, potentially affecting mixed-phase cloud development.
Stephen E. Schwartz
Biogeosciences, 21, 5045–5057, https://doi.org/10.5194/bg-21-5045-2024, https://doi.org/10.5194/bg-21-5045-2024, 2024
Short summary
Short summary
Anticorrelation in uptake of atmospheric CO2 following pulse emission or abrupt cessation of emissions is examined in two key model intercomparison studies. In both studies net transfer coefficients from the atmosphere to the world ocean and the terrestrial biosphere are anticorrelated across models, reducing inter-model diversity in decrease of atmospheric CO2 following the perturbation, increasing uncertainties of global warming potentials and consequences of prospective emission reductions.
Qian Li, Gil Lerner, Einat Bar, Efraim Lewinsohn, and Eran Tas
Biogeosciences, 21, 4133–4147, https://doi.org/10.5194/bg-21-4133-2024, https://doi.org/10.5194/bg-21-4133-2024, 2024
Short summary
Short summary
Our research indicates that instantaneous changes in meteorological parameters better reflect drought-induced changes in the emission rates of biogenic volatile organic compounds (BVOCs) from natural vegetation than their absolute values. However, following a small amount of irrigation, this trend became more moderate or reversed, accompanied by a dramatic increase in BVOC emission rates. These findings advance our understanding of BVOC emissions under climate change.
Pia Gottschalk, Aram Kalhori, Zhan Li, Christian Wille, and Torsten Sachs
Biogeosciences, 21, 3593–3616, https://doi.org/10.5194/bg-21-3593-2024, https://doi.org/10.5194/bg-21-3593-2024, 2024
Short summary
Short summary
To improve the accuracy of spatial carbon exchange estimates, we evaluated simple linear models for net ecosystem exchange (NEE) and gross primary productivity (GPP) and how they can be used to upscale the CO2 exchange of agricultural fields. The models are solely driven by Sentinel-2-derived vegetation indices (VIs). Evaluations show that different VIs have variable power to estimate NEE and GPP of crops in different years. The overall performance is as good as results from complex crop models.
Liliana Scapucci, Ankit Shekhar, Sergio Aranda-Barranco, Anastasiia Bolshakova, Lukas Hörtnagl, Mana Gharun, and Nina Buchmann
Biogeosciences, 21, 3571–3592, https://doi.org/10.5194/bg-21-3571-2024, https://doi.org/10.5194/bg-21-3571-2024, 2024
Short summary
Short summary
Forests face increased exposure to “compound soil and atmospheric drought” (CSAD) events due to global warming. We examined the impacts and drivers of CO2 fluxes during CSAD events at multiple layers of a deciduous forest over 18 years. Results showed reduced net ecosystem productivity and forest-floor respiration during CSAD events, mainly driven by soil and atmospheric drought. This unpredictability in forest CO2 fluxes jeopardises reforestation projects aimed at mitigating CO2 emissions.
Piaopiao Ke, Anna Lintunen, Pasi Kolari, Annalea Lohila, Santeri Tuovinen, Janne Lampilahti, Roseline Thakur, Maija Peltola, Otso Peräkylä, Tuomo Nieminen, Ekaterina Ezhova, Mari Pihlatie, Asta Laasonen, Markku Koskinen, Helena Rautakoski, Laura Heimsch, Tom Kokkonen, Aki Vähä, Ivan Mammarella, Steffen Noe, Jaana Bäck, Veli-Matti Kerminen, and Markku Kulmala
EGUsphere, https://doi.org/10.5194/egusphere-2024-1967, https://doi.org/10.5194/egusphere-2024-1967, 2024
Short summary
Short summary
Our research explores diverse ecosystems’ role in climate cooling via the concept of CarbonSink+ Potential. We measured CO2 uptake and loaal aerosol production in forests, farms, peatlands, urban gardens, and coastal areas across Finland and Estonia. The long-term data reveal that while forests are vital regarding CarbonSink+ Potential, farms and urban gardens also play significant roles. These insights can help optimize management policy of natural resource to mitigate global warming.
Tamara Emmerichs, Yen-Sen Lu, and Domenico Taraborrelli
Biogeosciences, 21, 3251–3269, https://doi.org/10.5194/bg-21-3251-2024, https://doi.org/10.5194/bg-21-3251-2024, 2024
Short summary
Short summary
We assess the representation of the plant response to surface water in a global atmospheric chemistry model. This sensitivity is crucial for the return of precipitation back into the atmosphere and thus significantly impacts the representation of weather as well as air quality. The newly implemented response function reduces this process and has a better comparison with satellite observations. This yields a higher intensity of unusual warm periods and higher production of air pollutants.
Nina L. H. Kinney, Charles A. Hepburn, Matthew I. Gibson, Daniel Ballesteros, and Thomas F. Whale
Biogeosciences, 21, 3201–3214, https://doi.org/10.5194/bg-21-3201-2024, https://doi.org/10.5194/bg-21-3201-2024, 2024
Short summary
Short summary
Molecules released from plant pollen induce the formation of ice from supercooled water at temperatures warm enough to suggest an underlying function for this activity. In this study we show that ice nucleators are ubiquitous in pollen. We suggest the molecules responsible fulfil some unrelated biological function and nucleate ice incidentally. The ubiquity of ice-nucleating molecules in pollen and particularly active examples reveal a greater potential for pollen to impact weather and climate.
Max Gaber, Yanghui Kang, Guy Schurgers, and Trevor Keenan
Biogeosciences, 21, 2447–2472, https://doi.org/10.5194/bg-21-2447-2024, https://doi.org/10.5194/bg-21-2447-2024, 2024
Short summary
Short summary
Gross primary productivity (GPP) describes the photosynthetic carbon assimilation, which plays a vital role in the carbon cycle. We can measure GPP locally, but producing larger and continuous estimates is challenging. Here, we present an approach to extrapolate GPP to a global scale using satellite imagery and automated machine learning. We benchmark different models and predictor variables and achieve an estimate that can capture 75 % of the variation in GPP.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek Sebastian El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
Biogeosciences, 21, 2051–2085, https://doi.org/10.5194/bg-21-2051-2024, https://doi.org/10.5194/bg-21-2051-2024, 2024
Short summary
Short summary
Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
Luana Krebs, Susanne Burri, Iris Feigenwinter, Mana Gharun, Philip Meier, and Nina Buchmann
Biogeosciences, 21, 2005–2028, https://doi.org/10.5194/bg-21-2005-2024, https://doi.org/10.5194/bg-21-2005-2024, 2024
Short summary
Short summary
This study explores year-round forest-floor greenhouse gas (GHG) fluxes in a Swiss spruce forest. Soil temperature and snow depth affected forest-floor respiration, while CH4 uptake was linked to snow cover. Negligible N2O fluxes were observed. In 2022, a warm year, CO2 emissions notably increased. The study suggests rising forest-floor GHG emissions due to climate change, impacting carbon sink behavior. Thus, for future forest management, continuous year-round GHG flux measurements are crucial.
Simone Rodrigues, Glauber Cirino, Demerval Moreira, Andrea Pozzer, Rafael Palácios, Sung-Ching Lee, Breno Imbiriba, José Nogueira, Maria Isabel Vitorino, and George Vourlitis
Biogeosciences, 21, 843–868, https://doi.org/10.5194/bg-21-843-2024, https://doi.org/10.5194/bg-21-843-2024, 2024
Short summary
Short summary
The radiative effects of atmospheric particles are still unknown for a wide variety of species and types of vegetation present in Amazonian biomes. We examined the effects of aerosols on solar radiation and their impacts on photosynthesis in an area of semideciduous forest in the southern Amazon Basin. Under highly smoky-sky conditions, our results show substantial photosynthetic interruption (20–70 %), attributed specifically to the decrease in solar radiation and leaf canopy temperature.
Ruben B. Schulte, Jordi Vilà-Guerau de Arellano, Susanna Rutledge-Jonker, Shelley van der Graaf, Jun Zhang, and Margreet C. van Zanten
Biogeosciences, 21, 557–574, https://doi.org/10.5194/bg-21-557-2024, https://doi.org/10.5194/bg-21-557-2024, 2024
Short summary
Short summary
We analyzed measurements with the aim of finding relations between the surface atmosphere exchange of NH3 and the CO2 uptake and transpiration by vegetation. We found a high correlation of daytime NH3 emissions with both latent heat flux and photosynthetically active radiation. Very few simultaneous measurements of NH3, CO2 fluxes and meteorological variables exist at sub-diurnal timescales. This study paves the way to finding more robust relations between the NH3 exchange flux and CO2 uptake.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Carolina Voigt, Nick Rutter, Paul Mann, Jean-Daniel Sylvain, and Alexandre Roy
Biogeosciences, 20, 5087–5108, https://doi.org/10.5194/bg-20-5087-2023, https://doi.org/10.5194/bg-20-5087-2023, 2023
Short summary
Short summary
We present an analysis of soil CO2 emissions in boreal and tundra regions during the non-growing season. We show that when the soil is completely frozen, soil temperature is the main control on CO2 emissions. When the soil is around the freezing point, with a mix of liquid water and ice, the liquid water content is the main control on CO2 emissions. This study highlights that the vegetation–snow–soil interactions must be considered to understand soil CO2 emissions during the non-growing season.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
Short summary
Short summary
Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Joyson Ahongshangbam, Liisa Kulmala, Jesse Soininen, Yasmin Frühauf, Esko Karvinen, Yann Salmon, Anna Lintunen, Anni Karvonen, and Leena Järvi
Biogeosciences, 20, 4455–4475, https://doi.org/10.5194/bg-20-4455-2023, https://doi.org/10.5194/bg-20-4455-2023, 2023
Short summary
Short summary
Urban vegetation is important for removing urban CO2 emissions and cooling. We studied the response of urban trees' functions (photosynthesis and transpiration) to a heatwave and drought at four urban green areas in the city of Helsinki. We found that tree water use was increased during heatwave and drought periods, but there was no change in the photosynthesis rates. The heat and drought conditions were severe at the local scale but were not excessive enough to restrict urban trees' functions.
Ryan Vella, Andrea Pozzer, Matthew Forrest, Jos Lelieveld, Thomas Hickler, and Holger Tost
Biogeosciences, 20, 4391–4412, https://doi.org/10.5194/bg-20-4391-2023, https://doi.org/10.5194/bg-20-4391-2023, 2023
Short summary
Short summary
We investigated the effect of the El Niño–Southern Oscillation (ENSO) on biogenic volatile organic compound (BVOC) emissions from plants. ENSO events can cause a significant increase in these emissions, which have a long-term impact on the Earth's atmosphere. Persistent ENSO conditions can cause long-term changes in vegetation, resulting in even higher BVOC emissions. We link ENSO-induced emission anomalies with driving atmospheric and vegetational variables.
Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
Short summary
Short summary
The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
Short summary
Short summary
Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
Short summary
Short summary
Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
Short summary
Short summary
We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
Short summary
Short summary
This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
Short summary
Short summary
Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
Short summary
Short summary
Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
Short summary
Short summary
Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
Short summary
Short summary
As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
Short summary
Short summary
For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
Short summary
Short summary
We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
Short summary
Short summary
Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
Short summary
Short summary
Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
Short summary
Short summary
Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
Short summary
Short summary
Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
Short summary
Short summary
We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
Short summary
Short summary
The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
Short summary
Short summary
A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
Short summary
Short summary
The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
Short summary
Short summary
Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
Short summary
Short summary
This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
Short summary
Short summary
To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
Short summary
Short summary
This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
Short summary
Short summary
The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
Short summary
Short summary
Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
Short summary
Short summary
This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Cited articles
Cantrell, W. and Robinson, C.: Heterogeneous freezing of ammonium sulfate
and sodium chloride solutions by long chain alcohols, Geophys. Res. Lett.,
33, L07802, https://doi.org/10.1029/2005GL024945, 2006.
Carslaw, K. S., Boucher, O., Spracklen, D. V., Mann, G. W., Rae, J. G. L., Woodward, S., and Kulmala, M.: A review of natural aerosol interactions and feedbacks within the Earth system, Atmos. Chem. Phys., 10, 1701–1737, https://doi.org/10.5194/acp-10-1701-2010, 2010.
Dahl, K. A., Oppo, D. W., Eglinton, T. I., Hughen, K. A., Curry, W. B., and
Sirocko, F.: Terrigenous plant wax inputs to the Arabian Sea: Implications
for the reconstruction of winds associated with the Indian Monsoon,
Geochim. Cosmochim. Ac., 69, 2547–2558, 2005.
Gagosian R. B., Peltzer, E. T., and Zafiriou, O. C.: Atmospheric transport
of continentally derived lipids to the tropical North Pacific, Nature, 291,
312–314, 1981.
Gill, P. S., Graedel, T. E., and Weschler, C. J.: Organic films on
atmospheric aerosol particles, fog droplets, cloud droplets, rain-drops, and
snowflakes, Rev. Geophys. Space Ge., 21, 903–920, 1983.
Hiura, T.: Stochasticity of species assemblage of canopy trees and
understory plants in a temperate secondary forest created by major
disturbances, Ecol. Res., 16, 887–893, 2001.
Hiura, T.: Estimation of aboveground biomass and net biomass increment in a
cool temperate forest on a landscape scale, Ecol. Res., 20,
271–277, 2005.
Kavouras, I. G. and Stephanou, E. G.: Particle size distribution of organic
primary and secondary aerosol in urban, background marine, and forest
atmosphere, J. Geophys. Res., 107, 4069, https://doi.org/10.1029/2000JD000278, 2002.
Knopf, D. A., Alpert, P. A., and Wang, B.: The role of organic aerosol in
atmospheric ice nucleation: A review, ACS Earth Space Chem., 2,
168–202, https://doi.org/10.1021/acsearthspacechem.7b00120, 2018.
Miyazaki, Y., Fu, P. Q., Kawamura, K., Mizoguchi, Y., and Yamanoi, K.: Seasonal variations of stable carbon isotopic composition and biogenic tracer compounds of water-soluble organic aerosols in a deciduous forest, Atmos. Chem. Phys., 12, 1367–1376, https://doi.org/10.5194/acp-12-1367-2012, 2012.
Mochizuki, T., Miyazaki, Y., Ono, K., Wada, R., Takahashi, Y., Saigusa, N., Kawamura, K., and Tani, A.: Emissions of biogenic volatile organic compounds and subsequent formation of secondary organic aerosols in a Larix kaempferi forest, Atmos. Chem. Phys., 15, 12029–12041, https://doi.org/10.5194/acp-15-12029-2015, 2015.
Mudge, S. M.: Fatty alcohols – a review of their natural synthesis and
environmental distribution, Exec. Summ. Soap Deterg. Assoc., 132, 1–141, 2015.
Müller, A., Miyazaki, Y., Tachibana, E., Kawamura, K., and Hiura, T.:
Evidence of a reduction in cloud condensation nuclei activity of
water-soluble aerosols caused by biogenic emissions in a cool-temperate
forest, Sci. Rep.-UK, 7, 8452, https://doi.org/10.1038/s41598-017-08112-9, 2017.
Nakaji, T., Oguma, H., and Hiura, T.: Ground-based monitoring of the leaf
phenology of deciduous broad-leaved trees using high resolution NDVI camera
images, J. Agric. Meteorol., 67, 65–74, 2011.
Oros, D. R. and Simoneit, B. R. T.: Identification and emission factors of
molecular tracers in organic aerosols from biomass burning Part 1. Temperate
climate conifers, Appl. Geochem., 16, 1513–1544, 2001a.
Oros, D. R. and Simoneit, B. R. T.: Identification and emission factors of
molecular tracers in organic aerosols from biomass burning Part 2. Deciduous
trees, Appl. Geochem., 16, 1545–1565, 2001b.
Pacini, E.: From anther and pollen ripening to pollen presentation, Plant
Syst. Evol., 222, 19–43, 2000.
Popovitz-Biro, R., Wang, J. L., Majewski, J., Shavit, E., Leis-erowitz, L.,
and Lahav, M.: Induced freezing of supercooled water into ice by
self-assembled crystalline monolayers of am-phiphilic alcohols at the
air-water interface, J. Am. Chem. Soc., 116, 1179–1191, 1994.
Pummer, B. G., Budke, C., Augustin-Bauditz, S., Niedermeier, D., Felgitsch, L., Kampf, C. J., Huber, R. G., Liedl, K. R., Loerting, T., Moschen, T., Schauperl, M., Tollinger, M., Morris, C. E., Wex, H., Grothe, H., Pöschl, U., Koop, T., and Fröhlich-Nowoisky, J.: Ice nucleation by water-soluble macromolecules, Atmos. Chem. Phys., 15, 4077–4091, https://doi.org/10.5194/acp-15-4077-2015, 2015.
Saigusa N., Yamamoto S., Hirata R., Ohtani Y., Ide R., Asanuma J., Gamo M.,
Hirano T., Kondo H., Kosugi Y.: Temporal and spatial variations in the
seasonal patterns of CO2 flux in boreal, temperate, and tropical forests in
East Asia, Agr. Forest Meteorol., 148, 700–713, 2008.
Schulten, H.-R., Simmleit, N., and Rump, H. H.: Soft ionization mass
spectrometry of epicuticular waxes isolated from coniferous needles, Chem.
Phys. Lipids, 41, 209–224, 1986.
Simoneit, B. R. T., Kobayashi, M., Mochida, M., Kawamura, K., Lee, M., Lim,
H.-J., Turpin, B. J., and Komazaki, Y.: Composition and major sources of
organic compounds of aerosol particulate matter sampled during the ACE-Asia
campaign, J. Geophys. Res., 109, D19S10, https://doi.org/10.1029/2004JD004598, 2004.
Takahashi Y., Saigusa N., Hirata R., Ide R., Fujinuma Y., Okano T., and Arase
T.: Characteristics of temporal variations in ecosystem CO2 exchange in
a temperate deciduous needle-leaf forest in the foothills of a high
mountain, J. Agric. Meteorol., 71, 302–317, 2015.
Tulloch, A. P.: Chemistry of waxes of higher plants, chemistry and
biochemistry of natural waxes, edited by: Kolattukudy, P. E., Amsterdam, Elsevier,
235–287, 1976.
Urakawa, R., Ohte, N., Shibata, H., Tateno, R., Hishi, T., Fukushima, K.,
Inagaki, Y., Hirai, K., Oda, T., Oyanagi, N., Nakata, M., Toda, H., Tanaka,
K., Fukuzawa, K., Watanabe, T., Tokuchi, N., Nakaji, T., Saigusa, N., Yamao,
Y., Nakanishi, A., Enoki, T., Ugawa, S., Hayakawa, A., Kotani, A., Kuroiwa,
M., and Isobe, K.: Biogeochemical nitrogen properties of forest soils in the
Japanese archipelago, Ecol. Res., 30, 1–2, https://doi.org/10.1007/s11284-014-1212-8,
2015.
Vioque, J. and Kolattukudy, P. E.: Resolution and purification of an
aldehydegenerating and an alcohol-generating fatty acyl-CoA reductase from
pea leaves (Pisum sativum L), Arch. Biochem. Biophys., 340, 64–72, 1997.
Yamamoto, S., Otto, A., and Simoneit, B. R. T.: GC-MS analysis of wax in
leaf of Sequoiadendron giganteum, Sequoioideae, Cuprressaceae, Res. Org. Geochem.,
23/24, 159–171, 2008 (in Japanese).
Short summary
Fatty alcohols (FAs) are major components of surface lipids and can act as surface-active atmospheric organic aerosols, influencing the cloud formation. We identified five secondary FAs in atmospheric aerosols at two temperate forest sites and revealed their distinct seasonal variation for the first time. Our results suggest that they originated mostly from plant wax and could be used as useful tracers for primary biological aerosol particles.
Fatty alcohols (FAs) are major components of surface lipids and can act as surface-active...
Altmetrics
Final-revised paper
Preprint