Articles | Volume 19, issue 17
https://doi.org/10.5194/bg-19-4129-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-19-4129-2022
© Author(s) 2022. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
06 Sep 2022
Research article |
| 06 Sep 2022
| 06 Sep 2022
Accounting for non-rainfall moisture and temperature improves litter decay model performance in a fog-dominated dryland system
J. Robert Logan
CORRESPONDING AUTHOR
W. K. Kellogg Biological Station, Hickory Corners, MI, USA
Department of Integrative Biology, Michigan State University, East
Lansing, MI, USA
Kathe E. Todd-Brown
Department of Environmental Engineering Sciences, University of
Florida, Gainesville, FL, USA
Kathryn M. Jacobson
Department of Biology, Grinnell College, Grinnell, IA, USA
Peter J. Jacobson
Department of Biology, Grinnell College, Grinnell, IA, USA
Roland Vogt
Institute of Meteorology, Climatology and Remote Sensing, University
of Basel, Basel, Switzerland
Sarah E. Evans
W. K. Kellogg Biological Station, Hickory Corners, MI, USA
Department of Integrative Biology, Michigan State University, East
Lansing, MI, USA
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Deepanshu Malik, Hendrik Andersen, Jan Cermak, Roland Vogt, and Bianca Adler
EGUsphere, https://doi.org/10.5194/egusphere-2025-2645, https://doi.org/10.5194/egusphere-2025-2645, 2025
This preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).
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We investigated cloud base height changes in the Namib Desert and developed a method to estimate it using ground-based humidity data. This improves fog monitoring by distinguishing fog from low clouds, which satellites alone cannot reliably do. Our results reveal diurnal patterns and linkages to coastal proximity in the vertical dynamics of fog and low clouds, highlighting key atmospheric processes with potential importance for future research.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
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Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Gianluca Mussetti, Dominik Brunner, Stephan Henne, Jonas Allegrini, E. Scott Krayenhoff, Sebastian Schubert, Christian Feigenwinter, Roland Vogt, Andreas Wicki, and Jan Carmeliet
Geosci. Model Dev., 13, 1685–1710, https://doi.org/10.5194/gmd-13-1685-2020, https://doi.org/10.5194/gmd-13-1685-2020, 2020
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Street trees are regarded as a powerful measure to reduce excessive heat in cities. To enable city-wide studies of the cooling effect of street trees, we developed a coupled urban climate model with explicit representation of street trees (COSMO-BEP-Tree). The model compares well with surface, flux and satellite observations and responds realistically to changes in tree characteristics. Street trees largely impact energy fluxes and wind speed, while air temperatures are only slightly reduced.
Hendrik Andersen, Jan Cermak, Julia Fuchs, Peter Knippertz, Marco Gaetani, Julian Quinting, Sebastian Sippel, and Roland Vogt
Atmos. Chem. Phys., 20, 3415–3438, https://doi.org/10.5194/acp-20-3415-2020, https://doi.org/10.5194/acp-20-3415-2020, 2020
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Fog and low clouds (FLCs) are an essential but poorly understood element of Namib regional climate. Here, a satellite-based data set of FLCs in central Namib, reanalysis data, and back trajectories are used to systematically analyze conditions when FLCs occur. Synoptic-scale mechanisms are identified that influence the formation of FLCs and the onshore advection of marine boundary-layer air masses. The findings lead to a new conceptual model of mechanisms that drive FLC variability in the Namib.
Corey R. Lawrence, Jeffrey Beem-Miller, Alison M. Hoyt, Grey Monroe, Carlos A. Sierra, Shane Stoner, Katherine Heckman, Joseph C. Blankinship, Susan E. Crow, Gavin McNicol, Susan Trumbore, Paul A. Levine, Olga Vindušková, Katherine Todd-Brown, Craig Rasmussen, Caitlin E. Hicks Pries, Christina Schädel, Karis McFarlane, Sebastian Doetterl, Christine Hatté, Yujie He, Claire Treat, Jennifer W. Harden, Margaret S. Torn, Cristian Estop-Aragonés, Asmeret Asefaw Berhe, Marco Keiluweit, Ágatha Della Rosa Kuhnen, Erika Marin-Spiotta, Alain F. Plante, Aaron Thompson, Zheng Shi, Joshua P. Schimel, Lydia J. S. Vaughn, Sophie F. von Fromm, and Rota Wagai
Earth Syst. Sci. Data, 12, 61–76, https://doi.org/10.5194/essd-12-61-2020, https://doi.org/10.5194/essd-12-61-2020, 2020
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The International Soil Radiocarbon Database (ISRaD) is an an open-source archive of soil data focused on datasets including radiocarbon measurements. ISRaD includes data from bulk or
whole soils, distinct soil carbon pools isolated in the laboratory by a variety of soil fractionation methods, samples of soil gas or water collected interstitially from within an intact soil profile, CO2 gas isolated from laboratory soil incubations, and fluxes collected in situ from a soil surface.
Hendrik Andersen, Jan Cermak, Irina Solodovnik, Luca Lelli, and Roland Vogt
Atmos. Chem. Phys., 19, 4383–4392, https://doi.org/10.5194/acp-19-4383-2019, https://doi.org/10.5194/acp-19-4383-2019, 2019
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Fog and low clouds (FLCs) are an essential but poorly understood component of Namib-region climate. This study uses observations from multiple satellite platforms and ground-based measurements to coherently characterize Namib-region FLC patterns. Findings concerning the seasonal cycle of the vertical structure and the diurnal cycle of FLCs lead to a new conceptual model of the spatiotemporal dynamics of FLCs in the Namib and help to improve the understanding of underlying processes.
Amelie Driemel, John Augustine, Klaus Behrens, Sergio Colle, Christopher Cox, Emilio Cuevas-Agulló, Fred M. Denn, Thierry Duprat, Masato Fukuda, Hannes Grobe, Martial Haeffelin, Gary Hodges, Nicole Hyett, Osamu Ijima, Ain Kallis, Wouter Knap, Vasilii Kustov, Charles N. Long, David Longenecker, Angelo Lupi, Marion Maturilli, Mohamed Mimouni, Lucky Ntsangwane, Hiroyuki Ogihara, Xabier Olano, Marc Olefs, Masao Omori, Lance Passamani, Enio Bueno Pereira, Holger Schmithüsen, Stefanie Schumacher, Rainer Sieger, Jonathan Tamlyn, Roland Vogt, Laurent Vuilleumier, Xiangao Xia, Atsumu Ohmura, and Gert König-Langlo
Earth Syst. Sci. Data, 10, 1491–1501, https://doi.org/10.5194/essd-10-1491-2018, https://doi.org/10.5194/essd-10-1491-2018, 2018
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The Baseline Surface Radiation Network (BSRN) collects and centrally archives high-quality ground-based radiation measurements in 1 min resolution. More than 10 300 months, i.e., > 850 years, of high-radiation data in 1 min resolution from the years 1992 to 2017 are available. The network currently comprises 59 stations collectively representing all seven continents as well as island-based stations in the Pacific, Atlantic, Indian and Arctic oceans.
Katherine Todd-Brown, Bin Zheng, and Thomas W. Crowther
Biogeosciences, 15, 3659–3671, https://doi.org/10.5194/bg-15-3659-2018, https://doi.org/10.5194/bg-15-3659-2018, 2018
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The temperature sensitivity of soil carbon loss is a critical parameter for projecting future CO2. Isolating soil temperature response in the field is challenging due to difficulties isolating root and microbial respiration. We use a database of direct-warming soil carbon changes to generate a new global temperature sensitivity. Incorporating this into Earth system models reduces projected soil carbon. But it also shows that variation due to this parameter is as high as all other causes.
Yiqi Luo, Zheng Shi, Xingjie Lu, Jianyang Xia, Junyi Liang, Jiang Jiang, Ying Wang, Matthew J. Smith, Lifen Jiang, Anders Ahlström, Benito Chen, Oleksandra Hararuk, Alan Hastings, Forrest Hoffman, Belinda Medlyn, Shuli Niu, Martin Rasmussen, Katherine Todd-Brown, and Ying-Ping Wang
Biogeosciences, 14, 145–161, https://doi.org/10.5194/bg-14-145-2017, https://doi.org/10.5194/bg-14-145-2017, 2017
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Climate change is strongly regulated by land carbon cycle. However, we lack the ability to predict future land carbon sequestration. Here, we develop a novel framework for understanding what determines the direction and rate of future change in land carbon storage. The framework offers a suite of new approaches to revolutionize land carbon model evaluation and improvement.
Y. P. Wang, J. Jiang, B. Chen-Charpentier, F. B. Agusto, A. Hastings, F. Hoffman, M. Rasmussen, M. J. Smith, K. Todd-Brown, Y. Wang, X. Xu, and Y. Q. Luo
Biogeosciences, 13, 887–902, https://doi.org/10.5194/bg-13-887-2016, https://doi.org/10.5194/bg-13-887-2016, 2016
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Comparing two nonlinear microbial models, we found that,
in response to warming, soil C decreases in one model but can increase or decrease in the other model, and sensitivity of priming response to carbon input increases with soil T in one model but decreases in the other model
Significance: these differences in the responses can be used to discern which model is more realistic, which will improve our understanding of the significance of soil microbial processes in the terrestrial C cycle.
F. Kaspar, J. Helmschrot, A. Mhanda, M. Butale, W. de Clercq, J. K. Kanyanga, F. O. S. Neto, S. Kruger, M. Castro Matsheka, G. Muche, T. Hillmann, K. Josenhans, R. Posada, J. Riede, M. Seely, C. Ribeiro, P. Kenabatho, R. Vogt, and N. Jürgens
Adv. Sci. Res., 12, 171–177, https://doi.org/10.5194/asr-12-171-2015, https://doi.org/10.5194/asr-12-171-2015, 2015
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One task of the “Southern African Science Service Centre for Climate Change and Adaptive Land Management” (www.sasscal.org) is the provision of climate data for Southern Africa. Extension and improvements of observational networks in Angola, Botswana, Namibia, Zambia and South Africa are supported. This effort is complemented by an improvement of climate data management at national weather authorities, capacity building activities and an extension of the data bases with historical climate data.
K. E. O. Todd-Brown, J. T. Randerson, F. Hopkins, V. Arora, T. Hajima, C. Jones, E. Shevliakova, J. Tjiputra, E. Volodin, T. Wu, Q. Zhang, and S. D. Allison
Biogeosciences, 11, 2341–2356, https://doi.org/10.5194/bg-11-2341-2014, https://doi.org/10.5194/bg-11-2341-2014, 2014
E. Hammer, N. Bukowiecki, M. Gysel, Z. Jurányi, C. R. Hoyle, R. Vogt, U. Baltensperger, and E. Weingartner
Atmos. Chem. Phys., 14, 1123–1139, https://doi.org/10.5194/acp-14-1123-2014, https://doi.org/10.5194/acp-14-1123-2014, 2014
K. E. O. Todd-Brown, J. T. Randerson, W. M. Post, F. M. Hoffman, C. Tarnocai, E. A. G. Schuur, and S. D. Allison
Biogeosciences, 10, 1717–1736, https://doi.org/10.5194/bg-10-1717-2013, https://doi.org/10.5194/bg-10-1717-2013, 2013
Related subject area
Biogeochemistry: Modelling, Terrestrial
Evaluation of long-term carbon dynamics in a drained forested peatland using the ForSAFE-Peat model
Technical note: A modified formulation of dynamic energy budget theory for faster computation of biological growth
Estimates of critical loads and exceedances of acidity and nutrient nitrogen for mineral soils in Canada for 2014–2016 average annual sulfur and nitrogen atmospheric deposition
Development of the DO3SE-Crop model to assess ozone effects on crop phenology, biomass, and yield
Future methane fluxes of peatlands are controlled by management practices and fluctuations in hydrological conditions due to climatic variability
Understanding and simulating cropland and non-cropland burning in Europe using the BASE (Burnt Area Simulator for Europe) model
Representation of the terrestrial carbon cycle in CMIP6
Does dynamically modeled leaf area improve predictions of land surface water and carbon fluxes? Insights into dynamic vegetation modules
Observational benchmarks inform representation of soil organic carbon dynamics in land surface models
X-BASE: the first terrestrial carbon and water flux products from an extended data-driven scaling framework, FLUXCOM-X
A 2001–2022 global gross primary productivity dataset using an ensemble model based on the random forest method
Future projections of Siberian wildfire and aerosol emissions
Mechanisms of soil organic carbon and nitrogen stabilization in mineral-associated organic matter – insights from modeling in phase space
Optimizing the terrestrial ecosystem gross primary productivity using carbonyl sulfide (COS) within a two-leaf modeling framework
Modeling integrated soil fertility management for maize production in Kenya using a Bayesian calibration of the DayCent model
When and why microbial-explicit soil organic carbon models can be unstable
The impacts of modelling prescribed vs. dynamic land cover in a high-CO2 future scenario – greening of the Arctic and Amazonian dieback
Climate-based prediction of carbon fluxes from deadwood in Australia
Integration of tree hydraulic processes and functional impairment to capture the drought resilience of a semiarid pine forest
The effect of temperature on photosystem II efficiency across plant functional types and climate
Modeling microbial carbon fluxes and stocks in global soils from 1901 to 2016
Elevated atmospheric CO2 concentration and vegetation structural changes contributed to gross primary productivity increase more than climate and forest cover changes in subtropical forests of China
Non-steady-state stomatal conductance modeling and its implications: from leaf to ecosystem
Modelled forest ecosystem carbon–nitrogen dynamics with integrated mycorrhizal processes under elevated CO2
A chemical kinetics theory for interpreting the non-monotonic temperature dependence of enzymatic reactions
Using Free Air CO2 Enrichment data to constrain land surface model projections of the terrestrial carbon cycle
Multiscale assessment of North American terrestrial carbon balance
Simulating net ecosystem exchange under seasonal snow cover at an Arctic tundra site
Spatial biases reduce the ability of Earth system models to simulate soil heterotrophic respiration fluxes
Tropical dry forest response to nutrient fertilization: a model validation and sensitivity analysis
Connecting competitor, stress-tolerator and ruderal (CSR) theory and Lund Potsdam Jena managed Land 5 (LPJmL 5) to assess the role of environmental conditions, management and functional diversity for grassland ecosystem functions
A global fuel characteristic model and dataset for wildfire prediction
Can models adequately reflect how long-term nitrogen enrichment alters the forest soil carbon cycle?
Temporal variability of observed and simulated gross primary productivity, modulated by vegetation state and hydrometeorological drivers
Empirical upscaling of OzFlux eddy covariance for high-resolution monitoring of terrestrial carbon uptake in Australia
A modeling approach to investigate drivers, variability and uncertainties in O2 fluxes and O2 : CO2 exchange ratios in a temperate forest
Modeling coupled nitrification–denitrification in soil with an organic hotspot
A new method for estimating carbon dioxide emissions from drained peatland forest soils for the greenhouse gas inventory of Finland
Enabling a process-oriented hydro-biogeochemical model to simulate soil erosion and nutrient losses
Potassium limitation of forest productivity – Part 1: A mechanistic model simulating the effects of potassium availability on canopy carbon and water fluxes in tropical eucalypt stands
Potassium limitation of forest productivity – Part 2: CASTANEA-MAESPA-K shows a reduction in photosynthesis rather than a stoichiometric limitation of tissue formation
Global evaluation of terrestrial biogeochemistry in the Energy Exascale Earth System Model (E3SM) and the role of the phosphorus cycle in the historical terrestrial carbon balance
Assessing carbon storage capacity and saturation across six central US grasslands using data–model integration
Optimizing the carbonic anhydrase temperature response and stomatal conductance of carbonyl sulfide leaf uptake in the Simple Biosphere model (SiB4)
Exploring environmental and physiological drivers of the annual carbon budget of biocrusts from various climatic zones with a mechanistic data-driven model
Improved process representation of leaf phenology significantly shifts climate sensitivity of ecosystem carbon balance
Mapping of ESA's Climate Change Initiative land cover data to plant functional types for use in the CLASSIC land model
Exploring the impacts of unprecedented climate extremes on forest ecosystems: hypotheses to guide modeling and experimental studies
Effect of droughts and climate change on future soil weathering rates in Sweden
Information content in time series of litter decomposition studies and the transit time of litter in arid lands
Daniel Escobar, Stefano Manzoni, Jeimar Tapasco, Patrik Vestin, and Salim Belyazid
Biogeosciences, 22, 2023–2047, https://doi.org/10.5194/bg-22-2023-2025, https://doi.org/10.5194/bg-22-2023-2025, 2025
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We studied carbon dynamics in afforested, drained peatlands using the ForSAFE-Peat model over two forest rotations. Our simulations showed that, while trees store carbon, significant soil carbon losses occur, particularly early on, indicating that forest growth may not fully offset these losses once carbon time dynamics are considered. This emphasises the need to consider both soil and harvested wood products when evaluating the climate impact of such systems.
Jinyun Tang and William J. Riley
Biogeosciences, 22, 1809–1819, https://doi.org/10.5194/bg-22-1809-2025, https://doi.org/10.5194/bg-22-1809-2025, 2025
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A new mathematical formulation of the dynamic energy budget model is presented for the growth of biological organisms. This new formulation combines mass conservation law and chemical kinetics theory and is computationally faster than the standard formulation of dynamic energy budget models. In simulating the growth of Thalassiosira weissflogii in a nitrogen-limiting chemostat, the new model is as good as the standard dynamic energy budget model using almost the same parameter values.
Hazel Cathcart, Julian Aherne, Michael D. Moran, Verica Savic-Jovcic, Paul A. Makar, and Amanda Cole
Biogeosciences, 22, 535–554, https://doi.org/10.5194/bg-22-535-2025, https://doi.org/10.5194/bg-22-535-2025, 2025
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Deposition from sulfur and nitrogen pollution can harm ecosystems, and recovery from this type of pollution can take decades or longer. To identify risk to Canadian soils, we created maps showing sensitivity to sulfur and nitrogen pollution. Results show that some ecosystems are at risk from acid and nutrient nitrogen deposition: 10 % of protected areas are receiving acid deposition beyond their damage threshold, and 70 % may be receiving nitrogen deposition that could cause biodiversity loss.
Pritha Pande, Sam Bland, Nathan Booth, Jo Cook, Zhaozhong Feng, and Lisa Emberson
Biogeosciences, 22, 181–212, https://doi.org/10.5194/bg-22-181-2025, https://doi.org/10.5194/bg-22-181-2025, 2025
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The DO3SE-Crop model extends the DO3SE to simulate ozone's impact on crops with modules for ozone uptake, damage, and crop growth from JULES-crop. It's versatile, suits China's varied agriculture, and improves yield predictions under ozone stress. It is essential for policy, water management, and climate response, and it integrates into Earth system models for a comprehensive understanding of agriculture's interaction with global systems.
Vilna Tyystjärvi, Tiina Markkanen, Leif Backman, Maarit Raivonen, Antti Leppänen, Xuefei Li, Paavo Ojanen, Kari Minkkinen, Roosa Hautala, Mikko Peltoniemi, Jani Anttila, Raija Laiho, Annalea Lohila, Raisa Mäkipää, and Tuula Aalto
Biogeosciences, 21, 5745–5771, https://doi.org/10.5194/bg-21-5745-2024, https://doi.org/10.5194/bg-21-5745-2024, 2024
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Drainage of boreal peatlands strongly influences soil methane fluxes, with important implications for climatic impacts. Here we simulate methane fluxes in forestry-drained and restored peatlands during the 21st century. We found that restoration turned peatlands into a source of methane, but the magnitude varied regionally. In forests, changes in the water table level influenced methane fluxes, and in general, the sink was weaker under rotational forestry compared to continuous cover forestry.
Matthew Forrest, Jessica Hetzer, Maik Billing, Simon P. K. Bowring, Eric Kosczor, Luke Oberhagemann, Oliver Perkins, Dan Warren, Fátima Arrogante-Funes, Kirsten Thonicke, and Thomas Hickler
Biogeosciences, 21, 5539–5560, https://doi.org/10.5194/bg-21-5539-2024, https://doi.org/10.5194/bg-21-5539-2024, 2024
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Climate change is causing an increase in extreme wildfires in Europe, but drivers of fire are not well understood, especially across different land cover types. We used statistical models with satellite data, climate data, and socioeconomic data to determine what affects burning in cropland and non-cropland areas of Europe. We found different drivers of burning in cropland burning vs. non-cropland to the point that some variables, e.g. population density, had the complete opposite effects.
Bettina K. Gier, Manuel Schlund, Pierre Friedlingstein, Chris D. Jones, Colin Jones, Sönke Zaehle, and Veronika Eyring
Biogeosciences, 21, 5321–5360, https://doi.org/10.5194/bg-21-5321-2024, https://doi.org/10.5194/bg-21-5321-2024, 2024
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This study investigates present-day carbon cycle variables in CMIP5 and CMIP6 simulations. Overall, CMIP6 models perform better but also show many remaining biases. A significant improvement in the simulation of photosynthesis in models with a nitrogen cycle is found, with only small differences between emission- and concentration-based simulations. Thus, we recommend using emission-driven simulations in CMIP7 by default and including the nitrogen cycle in all future carbon cycle models.
Sven Armin Westermann, Anke Hildebrandt, Souhail Bousetta, and Stephan Thober
Biogeosciences, 21, 5277–5303, https://doi.org/10.5194/bg-21-5277-2024, https://doi.org/10.5194/bg-21-5277-2024, 2024
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Plants at the land surface mediate between soil and the atmosphere regarding water and carbon transport. Since plant growth is a dynamic process, models need to consider these dynamics. Two models that predict water and carbon fluxes by considering plant temporal evolution were tested against observational data. Currently, dynamizing plants in these models did not enhance their representativeness, which is caused by a mismatch between implemented physical relations and observable connections.
Kamal Nyaupane, Umakant Mishra, Feng Tao, Kyongmin Yeo, William J. Riley, Forrest M. Hoffman, and Sagar Gautam
Biogeosciences, 21, 5173–5183, https://doi.org/10.5194/bg-21-5173-2024, https://doi.org/10.5194/bg-21-5173-2024, 2024
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Representing soil organic carbon (SOC) dynamics in Earth system models (ESMs) is a key source of uncertainty in predicting carbon–climate feedbacks. Using machine learning, we develop and compare predictive relationships in observations (Obs) and ESMs. We find different relationships between environmental factors and SOC stocks in Obs and ESMs. SOC prediction in ESMs may be improved by representing the functional relationships of environmental controllers in a way consistent with observations.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Jiří Dušek, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo A. Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Mana Gharun, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
Biogeosciences, 21, 5079–5115, https://doi.org/10.5194/bg-21-5079-2024, https://doi.org/10.5194/bg-21-5079-2024, 2024
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The movement of water, carbon, and energy from the Earth's surface to the atmosphere, or flux, is an important process to understand because it impacts our lives. Here, we outline a method called FLUXCOM-X to estimate global water and CO2 fluxes based on direct measurements from sites around the world. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Xin Chen, Tiexi Chen, Xiaodong Li, Yuanfang Chai, Shengjie Zhou, Renjie Guo, and Jie Dai
Biogeosciences, 21, 4285–4300, https://doi.org/10.5194/bg-21-4285-2024, https://doi.org/10.5194/bg-21-4285-2024, 2024
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We provide an ensemble-model-based GPP dataset (ERF_GPP) that explains 85.1 % of the monthly variation in GPP across 170 sites, which is higher than other GPP estimate models. In addition, ERF_GPP improves the phenomenon of “high-value underestimation and low-value overestimation” in GPP estimation to some extent. Overall, ERF_GPP provides a more reliable estimate of global GPP and will facilitate further development of carbon cycle research.
Reza Kusuma Nurrohman, Tomomichi Kato, Hideki Ninomiya, Lea Végh, Nicolas Delbart, Tatsuya Miyauchi, Hisashi Sato, Tomohiro Shiraishi, and Ryuichi Hirata
Biogeosciences, 21, 4195–4227, https://doi.org/10.5194/bg-21-4195-2024, https://doi.org/10.5194/bg-21-4195-2024, 2024
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SPITFIRE (SPread and InTensity of FIRE) was integrated into a spatially explicit individual-based dynamic global vegetation model to improve the accuracy of depicting Siberian forest fire frequency, intensity, and extent. Fires showed increased greenhouse gas and aerosol emissions in 2006–2100 for Representative Concentration Pathways. This study contributes to understanding fire dynamics, land ecosystem–climate interactions, and global material cycles under the threat of escalating fires.
Stefano Manzoni and M. Francesca Cotrufo
Biogeosciences, 21, 4077–4098, https://doi.org/10.5194/bg-21-4077-2024, https://doi.org/10.5194/bg-21-4077-2024, 2024
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Organic carbon and nitrogen are stabilized in soils via microbial assimilation and stabilization of necromass (in vivo pathway) or via adsorption of the products of extracellular decomposition (ex vivo pathway). Here we use a diagnostic model to quantify which stabilization pathway is prevalent using data on residue-derived carbon and nitrogen incorporation in mineral-associated organic matter. We find that the in vivo pathway is dominant in fine-textured soils with low organic matter content.
Huajie Zhu, Xiuli Xing, Mousong Wu, Weimin Ju, and Fei Jiang
Biogeosciences, 21, 3735–3760, https://doi.org/10.5194/bg-21-3735-2024, https://doi.org/10.5194/bg-21-3735-2024, 2024
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Ecosystem carbonyl sulfide (COS) fluxes were employed to optimize GPP estimation across ecosystems with the Biosphere-atmosphere Exchange Process Simulator (BEPS), which was developed for simulating the canopy COS uptake under its state-of-the-art two-leaf modeling framework. Our results showcased the efficacy of COS in improving model prediction and reducing prediction uncertainty of GPP and enhanced insights into the sensitivity, identifiability, and interactions of parameters related to COS.
Moritz Laub, Magdalena Necpalova, Marijn Van de Broek, Marc Corbeels, Samuel Mathu Ndungu, Monicah Wanjiku Mucheru-Muna, Daniel Mugendi, Rebecca Yegon, Wycliffe Waswa, Bernard Vanlauwe, and Johan Six
Biogeosciences, 21, 3691–3716, https://doi.org/10.5194/bg-21-3691-2024, https://doi.org/10.5194/bg-21-3691-2024, 2024
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We used the DayCent model to assess the potential impact of integrated soil fertility management (ISFM) on maize production, soil fertility, and greenhouse gas emission in Kenya. After adjustments, DayCent represented measured mean yields and soil carbon stock changes well and N2O emissions acceptably. Our results showed that soil fertility losses could be reduced but not completely eliminated with ISFM and that, while N2O emissions increased with ISFM, emissions per kilogram yield decreased.
Erik Schwarz, Samia Ghersheen, Salim Belyazid, and Stefano Manzoni
Biogeosciences, 21, 3441–3461, https://doi.org/10.5194/bg-21-3441-2024, https://doi.org/10.5194/bg-21-3441-2024, 2024
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The occurrence of unstable equilibrium points (EPs) could impede the applicability of microbial-explicit soil organic carbon models. For archetypal model versions we identify when instability can occur and describe mathematical conditions to avoid such unstable EPs. We discuss implications for further model development, highlighting the important role of considering basic ecological principles to ensure biologically meaningful models.
Sian Kou-Giesbrecht, Vivek K. Arora, Christian Seiler, and Libo Wang
Biogeosciences, 21, 3339–3371, https://doi.org/10.5194/bg-21-3339-2024, https://doi.org/10.5194/bg-21-3339-2024, 2024
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Terrestrial biosphere models can either prescribe the geographical distribution of biomes or simulate them dynamically, capturing climate-change-driven biome shifts. We isolate and examine the differences between these different land cover implementations. We find that the simulated terrestrial carbon sink at the end of the 21st century is twice as large in simulations with dynamic land cover than in simulations with prescribed land cover due to important range shifts in the Arctic and Amazon.
Elizabeth S. Duan, Luciana Chavez Rodriguez, Nicole Hemming-Schroeder, Baptiste Wijas, Habacuc Flores-Moreno, Alexander W. Cheesman, Lucas A. Cernusak, Michael J. Liddell, Paul Eggleton, Amy E. Zanne, and Steven D. Allison
Biogeosciences, 21, 3321–3338, https://doi.org/10.5194/bg-21-3321-2024, https://doi.org/10.5194/bg-21-3321-2024, 2024
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Understanding the link between climate and carbon fluxes is crucial for predicting how climate change will impact carbon sinks. We estimated carbon dioxide (CO2) fluxes from deadwood in tropical Australia using wood moisture content and temperature. Our model predicted that the majority of deadwood carbon is released as CO2, except when termite activity is detected. Future models should also incorporate wood traits, like species and chemical composition, to better predict fluxes.
Daniel Nadal-Sala, Rüdiger Grote, David Kraus, Uri Hochberg, Tamir Klein, Yael Wagner, Fedor Tatarinov, Dan Yakir, and Nadine K. Ruehr
Biogeosciences, 21, 2973–2994, https://doi.org/10.5194/bg-21-2973-2024, https://doi.org/10.5194/bg-21-2973-2024, 2024
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A hydraulic model approach is presented that can be added to any physiologically based ecosystem model. Simulated plant water potential triggers stomatal closure, photosynthesis decline, root–soil resistance increases, and sapwood and foliage senescence. The model has been evaluated at an extremely dry site stocked with Aleppo pine and was able to represent gas exchange, soil water content, and plant water potential. The model also responded realistically regarding leaf senescence.
Patrick Neri, Lianhong Gu, and Yang Song
Biogeosciences, 21, 2731–2758, https://doi.org/10.5194/bg-21-2731-2024, https://doi.org/10.5194/bg-21-2731-2024, 2024
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A first-of-its-kind global-scale model of temperature resilience and tolerance of photosystem II maximum quantum yield informs how plants maintain their efficiency of converting light energy to chemical energy for photosynthesis under temperature changes. Our finding explores this variation across plant functional types and habitat climatology, highlighting diverse temperature response strategies and a method to improve global-scale photosynthesis modeling under climate change.
Liyuan He, Jorge L. Mazza Rodrigues, Melanie A. Mayes, Chun-Ta Lai, David A. Lipson, and Xiaofeng Xu
Biogeosciences, 21, 2313–2333, https://doi.org/10.5194/bg-21-2313-2024, https://doi.org/10.5194/bg-21-2313-2024, 2024
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Soil microbes are the driving engine for biogeochemical cycles of carbon and nutrients. This study applies a microbial-explicit model to quantify bacteria and fungal biomass carbon in soils from 1901 to 2016. Results showed substantial increases in bacterial and fungal biomass carbon over the past century, jointly influenced by vegetation growth and soil temperature and moisture. This pioneering century-long estimation offers crucial insights into soil microbial roles in global carbon cycling.
Tao Chen, Félicien Meunier, Marc Peaucelle, Guoping Tang, Ye Yuan, and Hans Verbeeck
Biogeosciences, 21, 2253–2272, https://doi.org/10.5194/bg-21-2253-2024, https://doi.org/10.5194/bg-21-2253-2024, 2024
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Chinese subtropical forest ecosystems are an extremely important component of global forest ecosystems and hence crucial for the global carbon cycle and regional climate change. However, there is still great uncertainty in the relationship between subtropical forest carbon sequestration and its drivers. We provide first quantitative estimates of the individual and interactive effects of different drivers on the gross primary productivity changes of various subtropical forest types in China.
Ke Liu, Yujie Wang, Troy S. Magney, and Christian Frankenberg
Biogeosciences, 21, 1501–1516, https://doi.org/10.5194/bg-21-1501-2024, https://doi.org/10.5194/bg-21-1501-2024, 2024
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Stomata are pores on leaves that regulate gas exchange between plants and the atmosphere. Existing land models unrealistically assume stomata can jump between steady states when the environment changes. We implemented dynamic modeling to predict gradual stomatal responses at different scales. Results suggested that considering this effect on plant behavior patterns in diurnal cycles was important. Our framework also simplified simulations and can contribute to further efficiency improvements.
Melanie A. Thurner, Silvia Caldararu, Jan Engel, Anja Rammig, and Sönke Zaehle
Biogeosciences, 21, 1391–1410, https://doi.org/10.5194/bg-21-1391-2024, https://doi.org/10.5194/bg-21-1391-2024, 2024
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Due to their crucial role in terrestrial ecosystems, we implemented mycorrhizal fungi into the QUINCY terrestrial biosphere model. Fungi interact with mineral and organic soil to support plant N uptake and, thus, plant growth. Our results suggest that the effect of mycorrhizal interactions on simulated ecosystem dynamics is minor under constant environmental conditions but necessary to reproduce and understand observed patterns under changing conditions, such as rising atmospheric CO2.
Jinyun Tang and William J. Riley
Biogeosciences, 21, 1061–1070, https://doi.org/10.5194/bg-21-1061-2024, https://doi.org/10.5194/bg-21-1061-2024, 2024
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A chemical kinetics theory is proposed to explain the non-monotonic relationship between temperature and biochemical rates. It incorporates the observed thermally reversible enzyme denaturation that is ensured by the ceaseless thermal motion of molecules and ions in an enzyme solution and three well-established theories: (1) law of mass action, (2) diffusion-limited chemical reaction theory, and (3) transition state theory.
Nina Raoult, Louis-Axel Edouard-Rambaut, Nicolas Vuichard, Vladislav Bastrikov, Anne Sofie Lansø, Bertrand Guenet, and Philippe Peylin
Biogeosciences, 21, 1017–1036, https://doi.org/10.5194/bg-21-1017-2024, https://doi.org/10.5194/bg-21-1017-2024, 2024
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Observations are used to reduce uncertainty in land surface models (LSMs) by optimising poorly constraining parameters. However, optimising against current conditions does not necessarily ensure that the parameters treated as invariant will be robust in a changing climate. Manipulation experiments offer us a unique chance to optimise our models under different (here atmospheric CO2) conditions. By using these data in optimisations, we gain confidence in the future projections of LSMs.
Kelsey T. Foster, Wu Sun, Yoichi P. Shiga, Jiafu Mao, and Anna M. Michalak
Biogeosciences, 21, 869–891, https://doi.org/10.5194/bg-21-869-2024, https://doi.org/10.5194/bg-21-869-2024, 2024
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Assessing agreement between bottom-up and top-down methods across spatial scales can provide insights into the relationship between ensemble spread (difference across models) and model accuracy (difference between model estimates and reality). We find that ensemble spread is unlikely to be a good indicator of actual uncertainty in the North American carbon balance. However, models that are consistent with atmospheric constraints show stronger agreement between top-down and bottom-up estimates.
Victoria R. Dutch, Nick Rutter, Leanne Wake, Oliver Sonnentag, Gabriel Hould Gosselin, Melody Sandells, Chris Derksen, Branden Walker, Gesa Meyer, Richard Essery, Richard Kelly, Phillip Marsh, Julia Boike, and Matteo Detto
Biogeosciences, 21, 825–841, https://doi.org/10.5194/bg-21-825-2024, https://doi.org/10.5194/bg-21-825-2024, 2024
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We undertake a sensitivity study of three different parameters on the simulation of net ecosystem exchange (NEE) during the snow-covered non-growing season at an Arctic tundra site. Simulations are compared to eddy covariance measurements, with near-zero NEE simulated despite observed CO2 release. We then consider how to parameterise the model better in Arctic tundra environments on both sub-seasonal timescales and cumulatively throughout the snow-covered non-growing season.
Bertrand Guenet, Jérémie Orliac, Lauric Cécillon, Olivier Torres, Laura Sereni, Philip A. Martin, Pierre Barré, and Laurent Bopp
Biogeosciences, 21, 657–669, https://doi.org/10.5194/bg-21-657-2024, https://doi.org/10.5194/bg-21-657-2024, 2024
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Heterotrophic respiration fluxes are a major flux between surfaces and the atmosphere, but Earth system models do not yet represent them correctly. Here we benchmarked Earth system models against observation-based products, and we identified the important mechanisms that need to be improved in the next-generation Earth system models.
Shuyue Li, Bonnie Waring, Jennifer Powers, and David Medvigy
Biogeosciences, 21, 455–471, https://doi.org/10.5194/bg-21-455-2024, https://doi.org/10.5194/bg-21-455-2024, 2024
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We used an ecosystem model to simulate primary production of a tropical forest subjected to 3 years of nutrient fertilization. Simulations parameterized such that relative allocation to fine roots increased with increasing soil phosphorus had leaf, wood, and fine root production consistent with observations. However, these simulations seemed to over-allocate to fine roots on multidecadal timescales, affecting aboveground biomass. Additional observations across timescales would benefit models.
Stephen Björn Wirth, Arne Poyda, Friedhelm Taube, Britta Tietjen, Christoph Müller, Kirsten Thonicke, Anja Linstädter, Kai Behn, Sibyll Schaphoff, Werner von Bloh, and Susanne Rolinski
Biogeosciences, 21, 381–410, https://doi.org/10.5194/bg-21-381-2024, https://doi.org/10.5194/bg-21-381-2024, 2024
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In dynamic global vegetation models (DGVMs), the role of functional diversity in forage supply and soil organic carbon storage of grasslands is not explicitly taken into account. We introduced functional diversity into the Lund Potsdam Jena managed Land (LPJmL) DGVM using CSR theory. The new model reproduced well-known trade-offs between plant traits and can be used to quantify the role of functional diversity in climate change mitigation using different functional diversity scenarios.
Joe R. McNorton and Francesca Di Giuseppe
Biogeosciences, 21, 279–300, https://doi.org/10.5194/bg-21-279-2024, https://doi.org/10.5194/bg-21-279-2024, 2024
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Wildfires have wide-ranging consequences for local communities, air quality and ecosystems. Vegetation amount and moisture state are key components to forecast wildfires. We developed a combined model and satellite framework to characterise vegetation, including the type of fuel, whether it is alive or dead, and its moisture content. The daily data is at high resolution globally (~9 km). Our characteristics correlate with active fire data and can inform fire danger and spread modelling efforts.
Brooke A. Eastman, William R. Wieder, Melannie D. Hartman, Edward R. Brzostek, and William T. Peterjohn
Biogeosciences, 21, 201–221, https://doi.org/10.5194/bg-21-201-2024, https://doi.org/10.5194/bg-21-201-2024, 2024
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We compared soil model performance to data from a long-term nitrogen addition experiment in a forested ecosystem. We found that in order for soil carbon models to accurately predict future forest carbon sequestration, two key processes must respond dynamically to nitrogen availability: (1) plant allocation of carbon to wood versus roots and (2) rates of soil organic matter decomposition. Long-term experiments can help improve our predictions of the land carbon sink and its climate impact.
Jan De Pue, Sebastian Wieneke, Ana Bastos, José Miguel Barrios, Liyang Liu, Philippe Ciais, Alirio Arboleda, Rafiq Hamdi, Maral Maleki, Fabienne Maignan, Françoise Gellens-Meulenberghs, Ivan Janssens, and Manuela Balzarolo
Biogeosciences, 20, 4795–4818, https://doi.org/10.5194/bg-20-4795-2023, https://doi.org/10.5194/bg-20-4795-2023, 2023
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The gross primary production (GPP) of the terrestrial biosphere is a key source of variability in the global carbon cycle. To estimate this flux, models can rely on remote sensing data (RS-driven), meteorological data (meteo-driven) or a combination of both (hybrid). An intercomparison of 11 models demonstrated that RS-driven models lack the sensitivity to short-term anomalies. Conversely, the simulation of soil moisture dynamics and stress response remains a challenge in meteo-driven models.
Chad A. Burton, Luigi J. Renzullo, Sami W. Rifai, and Albert I. J. M. Van Dijk
Biogeosciences, 20, 4109–4134, https://doi.org/10.5194/bg-20-4109-2023, https://doi.org/10.5194/bg-20-4109-2023, 2023
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Australia's land-based ecosystems play a critical role in controlling the variability in the global land carbon sink. However, uncertainties in the methods used for quantifying carbon fluxes limit our understanding. We develop high-resolution estimates of Australia's land carbon fluxes using machine learning methods and find that Australia is, on average, a stronger carbon sink than previously thought and that the seasonal dynamics of the fluxes differ from those described by other methods.
Yuan Yan, Anne Klosterhalfen, Fernando Moyano, Matthias Cuntz, Andrew C. Manning, and Alexander Knohl
Biogeosciences, 20, 4087–4107, https://doi.org/10.5194/bg-20-4087-2023, https://doi.org/10.5194/bg-20-4087-2023, 2023
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A better understanding of O2 fluxes, their exchange ratios with CO2 and their interrelations with environmental conditions would provide further insights into biogeochemical ecosystem processes. We, therefore, used the multilayer canopy model CANVEG to simulate and analyze the flux exchange for our forest study site for 2012–2016. Based on these simulations, we further successfully tested the application of various micrometeorological methods and the prospects of real O2 flux measurements.
Jie Zhang, Elisabeth Larsen Kolstad, Wenxin Zhang, Iris Vogeler, and Søren O. Petersen
Biogeosciences, 20, 3895–3917, https://doi.org/10.5194/bg-20-3895-2023, https://doi.org/10.5194/bg-20-3895-2023, 2023
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Manure application to agricultural land often results in large and variable N2O emissions. We propose a model with a parsimonious structure to investigate N transformations around such N2O hotspots. The model allows for new detailed insights into the interactions between transport and microbial activities regarding N2O emissions in heterogeneous soil environments. It highlights the importance of solute diffusion to N2O emissions from such hotspots which are often ignored by process-based models.
Jukka Alm, Antti Wall, Jukka-Pekka Myllykangas, Paavo Ojanen, Juha Heikkinen, Helena M. Henttonen, Raija Laiho, Kari Minkkinen, Tarja Tuomainen, and Juha Mikola
Biogeosciences, 20, 3827–3855, https://doi.org/10.5194/bg-20-3827-2023, https://doi.org/10.5194/bg-20-3827-2023, 2023
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In Finland peatlands cover one-third of land area. For half of those, with 4.3 Mha being drained for forestry, Finland reports sinks and sources of greenhouse gases in forest lands on organic soils following its UNFCCC commitment. We describe a new method for compiling soil CO2 balance that follows changes in tree volume, tree harvests and temperature. An increasing trend of emissions from 1.4 to 7.9 Mt CO2 was calculated for drained peatland forest soils in Finland for 1990–2021.
Siqi Li, Bo Zhu, Xunhua Zheng, Pengcheng Hu, Shenghui Han, Jihui Fan, Tao Wang, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, Wei Zhang, and Yong Li
Biogeosciences, 20, 3555–3572, https://doi.org/10.5194/bg-20-3555-2023, https://doi.org/10.5194/bg-20-3555-2023, 2023
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Physical soil erosion and particulate carbon, nitrogen and phosphorus loss modules were incorporated into the process-oriented hydro-biogeochemical model CNMM-DNDC to realize the accurate simulation of water-induced erosion and subsequent particulate nutrient losses at high spatiotemporal resolution.
Ivan Cornut, Nicolas Delpierre, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, Otavio Campoe, Jose Luiz Stape, Vitoria Fernanda Santos, and Guerric le Maire
Biogeosciences, 20, 3093–3117, https://doi.org/10.5194/bg-20-3093-2023, https://doi.org/10.5194/bg-20-3093-2023, 2023
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Potassium is an essential element for living organisms. Trees are dependent upon this element for certain functions that allow them to build their trunks using carbon dioxide. Using data from experiments in eucalypt plantations in Brazil and a simplified computer model of the plantations, we were able to investigate the effect that a lack of potassium can have on the production of wood. Understanding nutrient cycles is useful to understand the response of forests to environmental change.
Ivan Cornut, Guerric le Maire, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, and Nicolas Delpierre
Biogeosciences, 20, 3119–3135, https://doi.org/10.5194/bg-20-3119-2023, https://doi.org/10.5194/bg-20-3119-2023, 2023
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After simulating the effects of low levels of potassium on the canopy of trees and the uptake of carbon dioxide from the atmosphere by leaves in Part 1, here we tried to simulate the way the trees use the carbon they have acquired and the interaction with the potassium cycle in the tree. We show that the effect of low potassium on the efficiency of the trees in acquiring carbon is enough to explain why they produce less wood when they are in soils with low levels of potassium.
Xiaojuan Yang, Peter Thornton, Daniel Ricciuto, Yilong Wang, and Forrest Hoffman
Biogeosciences, 20, 2813–2836, https://doi.org/10.5194/bg-20-2813-2023, https://doi.org/10.5194/bg-20-2813-2023, 2023
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We evaluated the performance of a land surface model (ELMv1-CNP) that includes both nitrogen (N) and phosphorus (P) limitation on carbon cycle processes. We show that ELMv1-CNP produces realistic estimates of present-day carbon pools and fluxes. We show that global C sources and sinks are significantly affected by P limitation. Our study suggests that introduction of P limitation in land surface models is likely to have substantial consequences for projections of future carbon uptake.
Kevin R. Wilcox, Scott L. Collins, Alan K. Knapp, William Pockman, Zheng Shi, Melinda D. Smith, and Yiqi Luo
Biogeosciences, 20, 2707–2725, https://doi.org/10.5194/bg-20-2707-2023, https://doi.org/10.5194/bg-20-2707-2023, 2023
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The capacity for carbon storage (C capacity) is an attribute that determines how ecosystems store carbon in the future. Here, we employ novel data–model integration techniques to identify the carbon capacity of six grassland sites spanning the US Great Plains. Hot and dry sites had low C capacity due to less plant growth and high turnover of soil C, so they may be a C source in the future. Alternately, cooler and wetter ecosystems had high C capacity, so these systems may be a future C sink.
Ara Cho, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Richard Wehr, and Maarten C. Krol
Biogeosciences, 20, 2573–2594, https://doi.org/10.5194/bg-20-2573-2023, https://doi.org/10.5194/bg-20-2573-2023, 2023
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Carbonyl sulfide (COS) is a useful constraint for estimating photosynthesis. To simulate COS leaf flux better in the SiB4 model, we propose a novel temperature function for enzyme carbonic anhydrase (CA) activity and optimize conductances using observations. The optimal activity of CA occurs below 40 °C, and Ball–Woodrow–Berry parameters are slightly changed. These reduce/increase uptakes in the tropics/higher latitudes and contribute to resolving discrepancies in the COS global budget.
Yunyao Ma, Bettina Weber, Alexandra Kratz, José Raggio, Claudia Colesie, Maik Veste, Maaike Y. Bader, and Philipp Porada
Biogeosciences, 20, 2553–2572, https://doi.org/10.5194/bg-20-2553-2023, https://doi.org/10.5194/bg-20-2553-2023, 2023
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We found that the modelled annual carbon balance of biocrusts is strongly affected by both the environment (mostly air temperature and CO2 concentration) and physiology, such as temperature response of respiration. However, the relative impacts of these drivers vary across regions with different climates. Uncertainty in driving factors may lead to unrealistic carbon balance estimates, particularly in temperate climates, and may be explained by seasonal variation of physiology due to acclimation.
Alexander J. Norton, A. Anthony Bloom, Nicholas C. Parazoo, Paul A. Levine, Shuang Ma, Renato K. Braghiere, and T. Luke Smallman
Biogeosciences, 20, 2455–2484, https://doi.org/10.5194/bg-20-2455-2023, https://doi.org/10.5194/bg-20-2455-2023, 2023
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This study explores how the representation of leaf phenology affects our ability to predict changes to the carbon balance of land ecosystems. We calibrate a new leaf phenology model against a diverse range of observations at six forest sites, showing that it improves the predictive capability of the processes underlying the ecosystem carbon balance. We then show how changes in temperature and rainfall affect the ecosystem carbon balance with this new model.
Libo Wang, Vivek K. Arora, Paul Bartlett, Ed Chan, and Salvatore R. Curasi
Biogeosciences, 20, 2265–2282, https://doi.org/10.5194/bg-20-2265-2023, https://doi.org/10.5194/bg-20-2265-2023, 2023
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Plant functional types (PFTs) are groups of plant species used to represent vegetation distribution in land surface models. There are large uncertainties associated with existing methods for mapping land cover datasets to PFTs. This study demonstrates how fine-resolution tree cover fraction and land cover datasets can be used to inform the PFT mapping process and reduce the uncertainties. The proposed largely objective method makes it easier to implement new land cover products in models.
Jennifer A. Holm, David M. Medvigy, Benjamin Smith, Jeffrey S. Dukes, Claus Beier, Mikhail Mishurov, Xiangtao Xu, Jeremy W. Lichstein, Craig D. Allen, Klaus S. Larsen, Yiqi Luo, Cari Ficken, William T. Pockman, William R. L. Anderegg, and Anja Rammig
Biogeosciences, 20, 2117–2142, https://doi.org/10.5194/bg-20-2117-2023, https://doi.org/10.5194/bg-20-2117-2023, 2023
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Unprecedented climate extremes (UCEs) are expected to have dramatic impacts on ecosystems. We present a road map of how dynamic vegetation models can explore extreme drought and climate change and assess ecological processes to measure and reduce model uncertainties. The models predict strong nonlinear responses to UCEs. Due to different model representations, the models differ in magnitude and trajectory of forest loss. Therefore, we explore specific plant responses that reflect knowledge gaps.
Veronika Kronnäs, Klas Lucander, Giuliana Zanchi, Nadja Stadlinger, Salim Belyazid, and Cecilia Akselsson
Biogeosciences, 20, 1879–1899, https://doi.org/10.5194/bg-20-1879-2023, https://doi.org/10.5194/bg-20-1879-2023, 2023
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In a future climate, extreme droughts might become more common. Climate change and droughts can have negative effects on soil weathering and plant health.
In this study, climate change effects on weathering were studied on sites in Sweden using the model ForSAFE, a climate change scenario and an extreme drought scenario. The modelling shows that weathering is higher during summer and increases with global warming but that weathering during drought summers can become as low as winter weathering.
Agustín Sarquis and Carlos A. Sierra
Biogeosciences, 20, 1759–1771, https://doi.org/10.5194/bg-20-1759-2023, https://doi.org/10.5194/bg-20-1759-2023, 2023
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Although plant litter is chemically and physically heterogenous and undergoes multiple transformations, models that represent litter dynamics often ignore this complexity. We used a multi-model inference framework to include information content in litter decomposition datasets and studied the time it takes for litter to decompose as measured by the transit time. In arid lands, the median transit time of litter is about 3 years and has a negative correlation with mean annual temperature.
Cited articles
Adair, C., Parton, W., Del Grosso, S., Silver, W., Harmon, M., Hall, S.,
Burke, I., and Hart, S.: Simple three-pool model accurately describes
patterns of long-term litter decomposition in diverse climates, Glob. Chang.
Biol., 14, 2636–2660, https://doi.org/10.1111/j.1365-2486.2008.01674.x,
2008.
Adair, E. C., Parton, W. J., King, J. Y., Brandt, L. A., and Lin, Y.:
Accounting for photodegradation dramatically improves prediction of carbon
losses in dryland systems, Ecosphere, 8, 1–16, https://doi.org/10.1002/ecs2.1892,
2017.
Aho, K., Derryberry, D., and Peterson, T.: Model selection for ecologists:
the worldviews of AIC and BIC, Ecology, 95, 631–636, 2014.
Austin, A. T.: Has water limited our imagination for aridland
biogeochemistry?, Trends Ecol. Evol., 26, 229–35,
https://doi.org/10.1016/j.tree.2011.02.003, 2011.
Austin, A. T. and Vivanco, L.: Plant litter decomposition in a semi-arid
ecosystem controlled by photodegradation, Nature, 442, 555–558,
https://doi.org/10.1038/nature05038, 2006.
Barnes, P. W., Throop, H. L., Hewins, D. B., Abbene, M. L., and Archer, S.
R.: Soil Coverage Reduces Photodegradation and Promotes the Development of
Soil-Microbial Films on Dryland Leaf Litter, Ecosystems, 15, 311–321,
https://doi.org/10.1007/s10021-011-9511-1, 2012.
Barnes, P. W., Throop, H. L., Archer, S. R., Breshears, D. D., Mcculley, R.
L., and Tobler, M. A.: Sunlight and Soil–Litter Mixing: Drivers of Litter
Decomposition in Drylands, in: Progress in Botany, vol. 76, 273–302,
https://doi.org/10.1038/1941023a0, 2015.
Bear, A. D. A., Jones, T. H., Kandeler, E., and Boddy, L.: Interactive
effects of temperature and soil moisture on fungal-mediated wood
decomposition and extracellular enzyme activity, Soil Biol. Biochem., 70,
151–158, https://doi.org/10.1016/j.soilbio.2013.12.017, 2014.
Birk, M. A.: respirometry: Tools for Conducting and Analyzing Respirometry
Experiments, R package version 1.3.0., 2021.
Bolker, B. M., Pacala, S. W., and Parton, W. J.: Linear Analysis of Soil
Decomposition: Insights from the CENTURY Model, Ecol. Appl., 8, 425–439,
1998.
Bonan, G. B., Hartman, M. D., Parton, W. J., and Wieder, W. R.: Evaluating
litter decomposition in earth system models with long-term litterbag
experiments: an example using the Community Land Model version 4 (CLM4),
Glob. Chang. Biol., 19, 957–974, https://doi.org/10.1111/gcb.12031, 2013.
Byrne, M. P. and O'Gorman, P. A.: Understanding Decreases in Land Relative
Humidity with Global Warming: Conceptual Model and GCM Simulations, J.
Climate, 29, 9045–9061, https://doi.org/10.1175/JCLI-D-16-0351.1, 2016.
Chen, M., Parton, W. J., Adair, E. C., Asao, S., Hartman, M. D., and Gao,
W.: Simulation of the effects of photodecay on long-term litter decay using
DayCent, Ecosphere, 7, 1–22, https://doi.org/10.1002/ecs2.1631, 2016.
GrassBase – The Online World Grass Flora:
http://www.kew.org/data/grasses-db.html, last access: 10 December 2021.
Collins, S. L., Sinsabaugh, R. L., Crenshaw, C., Green, L., Porras-Alfaro,
A., Stursova, M., and Zeglin, L. H.: Pulse dynamics and microbial processes
in aridland ecosystems, J. Ecol., 96, 413–420,
https://doi.org/10.1111/j.1365-2745.2008.01362.x, 2008.
Dai, A.: Increasing drought under global warming in observations and models,
Nat. Clim. Chang., 3, 52–58, https://doi.org/10.1038/nclimate1633, 2013.
Dirks, I., Navon, Y., Kanas, D., Dumbur, R., and Grüenzweig, J.:
Atmospheric water vapor as driver of litter decomposition in Mediterranean
shrubland and grassland during rainless seasons, Glob. Chang. Biol., 16,
2799–2812, https://doi.org/10.1111/j.1365-2486.2010.02172.x, 2010.
Eckardt, F. D., Soderberg, K., Coop, L. J., Muller, A. A., Vickery, K. J.,
Grandin, R. D., Jack, C., Kapalanga, T. S., and Henschel, J.: The nature of
moisture at Gobabeb, in the central Namib Desert, J. Arid Environ., 93,
7–19, https://doi.org/10.1016/j.jaridenv.2012.01.011, 2013.
Emery, N. C., D'Antonio, C. M., and Still, C. J.: Fog and live fuel moisture
in coastal California shrublands, Ecosphere, 9, 1–19,
https://doi.org/10.1002/ecs2.2167, 2018.
Evans, S. E., Todd-brown, K. E. O., Jacobson, K. M., and Jacobson, P. J.:
Non-rainfall moisture: A key driver of microbial respiration from standing
litter in arid, semiarid, and mesic grasslands, Ecosystems, 23, 1154–1169,
https://doi.org/10.1007/s10021-019-00461-y, 2020.
Forthun, G. M., Johnson, M. B., Schmitz, W. G., Blume, J., and Caldwell, R.
J.: Trends in fog frequency and duration in the southeast United States,
Phys. Geogr., 27, 206–222, https://doi.org/10.2747/0272-3646.27.3.206,
2006.
Gliksman, D., Rey, A., Seligmann, R., Dumbur, R., Sperling, O., Navon, Y.,
Haenel, S., De Angelis, P., Arnone III, J. A., and Grüenzweig, J. M.:
Biotic degradation at night, abiotic degradation at day: positive feedbacks
on litter decomposition in drylands, Glob. Chang. Biol., 23, 1564–1574,
https://doi.org/10.1111/gcb.13465, 2017.
Gliksman, D., Navon, Y., Dumbar, R., Haenel, S., and Grüenzweig, J. M.:
Higher rates of decomposition in standing vs. surface litter in a
Mediterranean ecosystem during the dry and the wet seasons, Plant Soil, 428,
427–439, 2018.
Gunawardhana, L. N., Al-Rawas, G. A., and Kazama, S.: An alternative method
for predicting relative humidity for climate change, Meteorol. Appl., 24,
551–559, https://doi.org/10.1002/met.1641, 2017.
Haensler, A., Cermak, J., Hagemann, S., and Jacob, D.: Will the southern
african west coast fog be affected by future climate change?, Erdkunde, 65,
261–275, https://doi.org/10.3112/erdkunde.2011.03.04, 2011.
Hewins, D. B., Archer, S. R., Okin, G. S., Mcculley, R. L., and Throop, H.
L.: Soil–Litter Mixing Accelerates Decomposition in a Chihuahuan Desert
Grassland, Ecosystems, 16, 183–195,
https://doi.org/10.1007/s10021-012-9604-5, 2013.
Jacobson, K. M. and Jacobson, P. J.: Rainfall regulates decomposition of
buried cellulose in the Namib Desert, J. Arid Environ., 38, 571–583,
https://doi.org/10.1006/jare.1997.0358, 1998.
Jacobson, K. M., van Diepeningen, A., Evans, S. E., Fritts, R., Gemmel, P.,
Marsho, C., Seely, M., Wenndt, A., Yang, X., and Jacobson, P.: Non-rainfall
moisture activates fungal decomposition of surface litter in the Namib Sand
Sea, PLoS One, 10, e0126977, https://doi.org/10.1371/journal.pone.0126977,
2015.
King, J. Y., Brandt, L. A., and Adair, E. C.: Shedding light on plant litter
decomposition: advances, implications and new directions in understanding
the role of photodegradation, Biogeochemistry, 111, 57–81,
https://doi.org/10.1007/s10533-012-9737-9, 2012.
Lee, H., Fitzgerald, J., Hewins, D. B., McCulley, R. L., Archer, S. R.,
Rahn, T., and Throop, H. L.: Soil moisture and soil-litter mixing effects on
surface litter decomposition: A controlled environment assessment, Soil
Biol. Biochem., 72, 123–132, https://doi.org/10.1016/j.soilbio.2014.01.027,
2014.
Liu, G., Cornwell, W. K., Pan, X., Ye, D., Liu, F., Huang, Z., Dong, M., and
Cornelissen, J. H. C.: Decomposition of 51 semidesert species from
wide-ranging phylogeny is faster in standing and sand-buried than in surface
leaf litters: implications for carbon and nutrient dynamics, Plant Soil,
396, 175–187, https://doi.org/10.1007/s11104-015-2595-1, 2015.
Logan, J. R. and Brown, K. T.: NRM Gradient Project, Github [code and data set], https://github.com/loganja3/NRM-Gradient-Project, last access: 19 June 2022.
Logan, J. R., Jacobson, K. M., Jacobson, P. J., and Evans, S. E.: Fungal
Communities on Standing Litter Are Structured by Moisture Type and Constrain
Decomposition in a Hyper-Arid Grassland Site Descriptions and Climatic Data,
Front. Microbiol., 12, 1–15, https://doi.org/10.3389/fmicb.2021.596517,
2021.
Logan, J. R., Barnes, P. W., and Evans, S. E.: Photodegradation of plant
litter cuticles enhances microbial decomposition by increasing uptake of
non-rainfall moisture, Funct. Ecol., 36, 1727–1738,
https://doi.org/10.1111/1365-2435.14053, 2022.
Louw, G. N. and Seely, M. K.: Ecology of Desert Organisms, Longman Group
Limited, Essex, UK, 194 pp., 1982.
Low-Décarie, E., Boatman, T. G., Bennett, N., Passfield, W.,
Gavalás-olea, A., Siegel, P., and Geider, R. J.: Predictions of response
to temperature are contingent on model choice and data quality, Ecol. Evol.,
7, 10467–10481, https://doi.org/10.1002/ece3.3576, 2017.
Luo, Y., Ahlström, A., Allison, S. D., Batjes, N. H., Brovkin, V.,
Carvalhais, N., Chappell, A., Ciais, P., Davidson, E. A., Finzi, A.,
Georgiou, K., Guenet, B., Hararuk, O., Harden, J. W., He, Y., Hopkins, F.,
Jiang, L., Koven, C., Jackson, R. B., Jones, C. D., Lara, M. J., Liang, J.,
Mcguire, A. D., Parton, W., Peng, C., Randerson, J. T., Salazar, A., Sierra,
C. A., Smith, M. J., Tian, H., Todd-brown, K. E. O., Torn, M., Groenigen, K.
J., Wang, Y. P., West, T. O., Wei, Y., Wieder, W. R., Xia, J., Xu, X., Xu,
X., and Zhou, T.: Toward more realistic projections of soil carbon dynamics
by Earth system models, Global Biogeochem. Cy., 30, 40–56,
https://doi.org/10.1002/2015GB005239.Received, 2015.
Necpálová, M., Anex, R. P., Fienen, M. N., Del Grosso, S. J.,
Castellano, M. J., Sawyer, J. E., Iqbal, J., Pantoja, J. L., and Barker, D.
W.: Understanding the DayCent model: Calibration, sensitivity , and
identifiability through inverse modeling, Environ. Model. Softw., 66,
110–130, https://doi.org/10.1016/j.envsoft.2014.12.011, 2015.
Newell, S. Y., Fallon, R. D., Rodriguez, R. M. C., and Groene, L. C.:
Influence of rain, tidal wetting and relative humidity on release of carbon
dioxide by standing-dead salt-marsh plants, Oecologia, 68, 73–79, 1985.
Noy-Meir, I.: Desert Ecosystems: Environment and Producers, in: Annual
Review of Ecology and Systematics Vol. 4, edited by: Johnston, R., Frank,
P., and Michener, C., Annual Reviews Inc., Palo Alto., 1973.
Parton, W., Silver, W. L., Burke, I. C., Grassens, L., Harmon, M. E.,
Currie, W. S., King, J. Y., Adair, E. C., Brandt, L. A., Hart, S. C., and
Fasth, B.: Global-Scale Similarities in Nitrogen Release Patterns During
Long-Term Decomposition, Science, 315, 361–364, 2007.
Petraglia, A., Cacciatori, C., Chelli, S., Fenu, G., Calderisi, G., Gargano,
D., Abeli, T., Orsenigo, S., and Carbognani, M.: Litter decomposition:
effects of temperature driven by soil moisture and vegetation type, Plant
Soil, 455, 187–200, 2019.
R Core Team: R: A language and environment for statistical computing, https://www.R-project.org/, last access: 10 October 2020.
Roth-Nebelsick, A., Ebner, M., Miranda, T., Gottschalk, V., Voigt, D., Gorb,
S., Stegmaier, T., Sarsour, J., Linke, M., and Konrad, W.: Leaf surface
structures enable the endemic Namib desert grass Stipagrostis sabulicola to
irrigate itself with fog water, J. R. Soc. Interface, 9, rsif20110847,
https://doi.org/10.1098/rsif.2011.0847, 2012.
Seely, M. K. and Louw, G. N.: First approximation of the effects of rainfall
on the ecology of a Namib Desert dune ecosystem, J. Arid Environ., 3,
25–54, 1980.
Sentelhas, P. C., Marta, A. D., Orlandini, S., Santos, E. A., Gillespie, T.
J., and Gleason, M. L.: Suitability of relative humidity as an estimator of
leaf wetness duration, Agric. For. Meteorol., 148, 392–400,
https://doi.org/10.1016/j.agrformet.2007.09.011, 2008.
Sierra, C. A.: Temperature sensitivity of organic matter decomposition in
the Arrhenius equation: some theoretical considerations, Biogeochemistry,
1–15, https://doi.org/10.1007/s10533-011-9596-9, 2012.
Sierra, C. A., Trumbore, S. E., Davidson, E. A., Vicca, S., and Janssens,
I.: Sensitivity of decomposition rates of soil organic matter with respect
to simultaneous changes in temperature and moisture, J. Adv. Model. Earth
Syst., 335–356, https://doi.org/10.1002/2014MS000358.Received, 2015.
Sokolov, A., Kicklighter, D., Schlosser, A., Wang, C., Monier, E.,
Brown-Steiner, B., Primm, R., Forest, C., Gao, X., Libardoni, A., and
Eastham, S.: Description and Evaluation of the MIT Earth System Model
(MESM), J. Adv. Model. Earth Syst., 10, 1759–1789,
https://doi.org/10.1029/2018MS001277, 2018.
Tschinkel, W. R.: The sorption of water vapor by windborne plant debris in
the Namib Desert, 2, 21–24, 1973.
Wang, J., Liu, L., Wang, X., and Chen, Y.: The interaction between abiotic
photodegradation and microbial decomposition under ultraviolet radiation,
Glob. Chang. Biol., 21, 2095–2104, https://doi.org/10.1111/gcb.12812, 2015.
Wang, J., Liu, L., Wang, X., Yang, S., Zhang, B., Li, P., Qiao, C., Deng,
M., and Liu, W.: High night-time humidity and dissolved organic carbon
content support rapid decomposition of standing litter in a semi-arid
landscape, Funct. Ecol., 31, 1659–1668,
https://doi.org/10.1111/1365-2435.12854, 2017.
Weathers, K. C.: The importance of cloud and fog in the maintenance of
ecosystems, Trends Ecol. Evol., 14, 214–215,
https://doi.org/10.1016/S0169-5347(99)01635-3, 1999.
Wenndt, A. J., Evans, S. E., Diepeningen, A. D. van, Logan, J. R., Jacobson,
P. J., Seely, M. K., and Jacobson, K. M.: Why plants harbor complex
endophytic fungal communities: Insights from perennial bunchgrass
Stipagrostis sabulicola in the Namib Sand Sea, Front. Microbiol., 12, 1–13,
https://doi.org/10.3389/fmicb.2021.691584, 2021.
Xie, Y.: A meta-analysis of critique of litterbag method used in examining
decomposition of leaf litters, J. Soils Sediments, 20, 1881–1886,
https://doi.org/10.1007/s11368-020-02572-9, 2020.
Zhang, D., Hui, D., Luo, Y., and Zhou, G.: Rates of litter decomposition in
terrestrial ecosystems: global patterns and controlling factors, J. Plant
Ecol., 1, 85–93, https://doi.org/10.1093/jpe/rtn002, 2008.
Short summary
Understanding how plants decompose is important for understanding where the atmospheric CO2 they absorb ends up after they die. In forests, decomposition is controlled by rain but not in deserts. We performed a 2.5-year study in one of the driest places on earth (the Namib desert in southern Africa) and found that fog and dew, not rainfall, closely controlled how quickly plants decompose. We also created a model to help predict decomposition in drylands with lots of fog and/or dew.
Understanding how plants decompose is important for understanding where the atmospheric CO2 they...
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