Articles | Volume 20, issue 17
https://doi.org/10.5194/bg-20-3613-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-20-3613-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
31 Aug 2023
Research article |
| 31 Aug 2023
| 31 Aug 2023
Bacterioplankton dark CO2 fixation in oligotrophic waters
Afrah Alothman
CORRESPONDING AUTHOR
Red Sea Research Centre, Biological and Environmental Science and
Engineering Division, King Abdullah University of Science and Technology
(KAUST), Thuwal, 23955, Saudi Arabia
Daffne López-Sandoval
Red Sea Research Centre, Biological and Environmental Science and
Engineering Division, King Abdullah University of Science and Technology
(KAUST), Thuwal, 23955, Saudi Arabia
Coastal and Marine Resources Core Lab (CMR), King Abdullah
University of Science and Technology (KAUST), Thuwal, 23955, Saudi Arabia
Carlos M. Duarte
Red Sea Research Centre, Biological and Environmental Science and
Engineering Division, King Abdullah University of Science and Technology
(KAUST), Thuwal, 23955, Saudi Arabia
Susana Agustí
Red Sea Research Centre, Biological and Environmental Science and
Engineering Division, King Abdullah University of Science and Technology
(KAUST), Thuwal, 23955, Saudi Arabia
Related authors
No articles found.
Christian Lønborg, Cátia Carreira, Gwenaël Abril, Susana Agustí, Valentina Amaral, Agneta Andersson, Javier Arístegui, Punyasloke Bhadury, Mariana B. Bif, Alberto V. Borges, Steven Bouillon, Maria Ll. Calleja, Luiz C. Cotovicz Jr., Stefano Cozzi, Maryló Doval, Carlos M. Duarte, Bradley Eyre, Cédric G. Fichot, E. Elena García-Martín, Alexandra Garzon-Garcia, Michele Giani, Rafael Gonçalves-Araujo, Renee Gruber, Dennis A. Hansell, Fuminori Hashihama, Ding He, Johnna M. Holding, William R. Hunter, J. Severino P. Ibánhez, Valeria Ibello, Shan Jiang, Guebuem Kim, Katja Klun, Piotr Kowalczuk, Atsushi Kubo, Choon-Weng Lee, Cláudia B. Lopes, Federica Maggioni, Paolo Magni, Celia Marrase, Patrick Martin, S. Leigh McCallister, Roisin McCallum, Patricia M. Medeiros, Xosé Anxelu G. Morán, Frank E. Muller-Karger, Allison Myers-Pigg, Marit Norli, Joanne M. Oakes, Helena Osterholz, Hyekyung Park, Maria Lund Paulsen, Judith A. Rosentreter, Jeff D. Ross, Digna Rueda-Roa, Chiara Santinelli, Yuan Shen, Eva Teira, Tinkara Tinta, Guenther Uher, Masahide Wakita, Nicholas Ward, Kenta Watanabe, Yu Xin, Youhei Yamashita, Liyang Yang, Jacob Yeo, Huamao Yuan, Qiang Zheng, and Xosé Antón Álvarez-Salgado
Earth Syst. Sci. Data, 16, 1107–1119, https://doi.org/10.5194/essd-16-1107-2024, https://doi.org/10.5194/essd-16-1107-2024, 2024
Short summary
Short summary
In this paper, we present the first edition of a global database compiling previously published and unpublished measurements of dissolved organic matter (DOM) collected in coastal waters (CoastDOM v1). Overall, the CoastDOM v1 dataset will be useful to identify global spatial and temporal patterns and to facilitate reuse in studies aimed at better characterizing local biogeochemical processes and identifying a baseline for modelling future changes in coastal waters.
Nadia Burgoa, Francisco Machín, Ángeles Marrero-Díaz, Ángel Rodríguez-Santana, Antonio Martínez-Marrero, Javier Arístegui, and Carlos Manuel Duarte
Ocean Sci., 16, 483–511, https://doi.org/10.5194/os-16-483-2020, https://doi.org/10.5194/os-16-483-2020, 2020
Short summary
Short summary
The main objective of the study is to analyze the export of carbon to the open ocean from the rich waters of the upwelling system of North Africa. South of the Canary Islands, permanent upwelling interacts with other physical processes impacting the main biogeochemical processes. Taking advantage of data from two cruises combined with the outputs of models, important conclusions from the differences observed between seasons are obtained, largely related to changes in the CVFZ in this area.
Celina Burkholz, Neus Garcias-Bonet, and Carlos M. Duarte
Biogeosciences, 17, 1717–1730, https://doi.org/10.5194/bg-17-1717-2020, https://doi.org/10.5194/bg-17-1717-2020, 2020
Short summary
Short summary
Seagrass meadows store carbon in their biomass and sediments, but they have also been shown to be sources of carbon dioxide (CO2) and methane (CH4). We experimentally investigated the effect of warming and prolonged darkness on CO2 and CH4 fluxes in Red Sea seagrass (Halophila stipulacea) communities. Our results indicated that sublethal warming may lead to increased emissions of greenhouse gases from seagrass meadows which may contribute to further enhance global warming.
Kimberlee Baldry, Vincent Saderne, Daniel C. McCorkle, James H. Churchill, Susana Agusti, and Carlos M. Duarte
Biogeosciences, 17, 423–439, https://doi.org/10.5194/bg-17-423-2020, https://doi.org/10.5194/bg-17-423-2020, 2020
Short summary
Short summary
The carbon cycling of coastal ecosystems over large spatial scales is not well measured relative to the open ocean. In this study we measure the carbonate system in the three habitats, to measure ecosystem-driven changes compared to offshore waters. We find (1) 70 % of seagrass meadows and mangrove forests show large ecosystem-driven changes, and (2) mangrove forests show strong and consistent trends over large scales, while seagrass meadows display more variability.
Miguel Agulles, Gabriel Jordà, Burt Jones, Susana Agustí, and Carlos M. Duarte
Ocean Sci., 16, 149–166, https://doi.org/10.5194/os-16-149-2020, https://doi.org/10.5194/os-16-149-2020, 2020
Short summary
Short summary
The Red Sea holds one of the most diverse marine ecosystems in the world, although fragile and vulnerable to ocean warming. To better understand the long-term variability and trends of temperature in the whole water column, we produce a 3-D gridded temperature product (TEMPERSEA) for the period 1958–2017, based on a large number of in situ observations, covering the Red Sea and the Gulf of Aden.
Susana Agustí, Jeffrey W. Krause, Israel A. Marquez, Paul Wassmann, Svein Kristiansen, and Carlos M. Duarte
Biogeosciences, 17, 35–45, https://doi.org/10.5194/bg-17-35-2020, https://doi.org/10.5194/bg-17-35-2020, 2020
Short summary
Short summary
We found that 24 % of the total diatoms community in the Arctic water column (450 m depth) was located below the photic layer. Healthy diatom communities in active spring–bloom stages remained in the photic layer. Dying diatom communities exported a large fraction of the biomass to the aphotic zone, fuelling carbon sequestration and benthic ecosystems in the Arctic. The results of the study conform to a conceptual model where diatoms grow during the bloom until silicic acid stocks are depleted.
Daffne C. López-Sandoval, Katherine Rowe, Paloma Carillo-de-Albonoz, Carlos M. Duarte, and Susana Agustí
Biogeosciences, 16, 2983–2995, https://doi.org/10.5194/bg-16-2983-2019, https://doi.org/10.5194/bg-16-2983-2019, 2019
Short summary
Short summary
We addressed how the intertwined effect of temperature and nutrients modulates the metabolic response of planktonic communities in the Red Sea, one of the warmest seas on earth. Our study unveiled that photosynthesis increases at a faster pace than respiration rates for this group of organisms formed by microalgae, bacteria, and drifting animals. This anomaly is likely due to the nature of the basin where the warmest waters are frequently enriched with nutrients, which favours microalgae growth.
Susann Rossbach, Vincent Saderne, Andrea Anton, and Carlos M. Duarte
Biogeosciences, 16, 2635–2650, https://doi.org/10.5194/bg-16-2635-2019, https://doi.org/10.5194/bg-16-2635-2019, 2019
Short summary
Short summary
Giant clams including the species Tridacna maxima are unique among bivalves as they live in symbiosis with unicellular algae and generally function as net photoautotrophs. Light is therefore crucial for these species to thrive. We show that net calcification and photosynthetic rates of T. maxima are light dependent, with maximum rates at conditions comparable to 4 m water depth, reflected also in the depth-related distribution in the Red Sea with maximum abundances in shallow sunlit coral reefs.
Neus Garcias-Bonet, Raquel Vaquer-Sunyer, Carlos M. Duarte, and Núria Marbà
Biogeosciences, 16, 167–175, https://doi.org/10.5194/bg-16-167-2019, https://doi.org/10.5194/bg-16-167-2019, 2019
Short summary
Short summary
We assess the impact of warming on nitrogen fixation in three key Mediterranean macrophytes by experimentally measuring sediment nitrogen fixation rates at current and projected seawater temperature by 2100 under a scenario of moderate greenhouse gas emissions. The temperature dependence of nitrogen fixation could potentially increase rates by 37 % by the end of the century, with important consequences for primary production in coastal ecosystems.
Neus Garcias-Bonet, Marco Fusi, Muhammad Ali, Dario R. Shaw, Pascal E. Saikaly, Daniele Daffonchio, and Carlos M. Duarte
Biogeosciences, 15, 7333–7346, https://doi.org/10.5194/bg-15-7333-2018, https://doi.org/10.5194/bg-15-7333-2018, 2018
Short summary
Short summary
Nitrogen (N) loads are detrimental for coastal ecosystems. We measured the balance between N losses and gains in a Red Sea seagrass. The N loss was higher than N2 fixed, pointing out the importance of seagrasses in removing N from the system. N2 losses increased with temperature. Therefore, the forecasted warming could increase the N2 flux to the atmosphere, potentially impacting seagrass productivity and their capacity to mitigate climate change but also enhancing their potential N removal.
Ariane Arias-Ortiz, Pere Masqué, Jordi Garcia-Orellana, Oscar Serrano, Inés Mazarrasa, Núria Marbà, Catherine E. Lovelock, Paul S. Lavery, and Carlos M. Duarte
Biogeosciences, 15, 6791–6818, https://doi.org/10.5194/bg-15-6791-2018, https://doi.org/10.5194/bg-15-6791-2018, 2018
Short summary
Short summary
Efforts to include tidal marsh, mangrove and seagrass ecosystems in existing carbon mitigation strategies are limited by a lack of estimates of carbon accumulation rates (CARs). We discuss the use of 210Pb dating to determine CARs in these habitats, which are often composed of heterogeneous sediments and affected by sedimentary processes. Results show that obtaining reliable geochronologies in these systems is ambitious, but estimates of mean 100-year CARs are mostly secure within 20 % error.
Jeffrey W. Krause, Carlos M. Duarte, Israel A. Marquez, Philipp Assmy, Mar Fernández-Méndez, Ingrid Wiedmann, Paul Wassmann, Svein Kristiansen, and Susana Agustí
Biogeosciences, 15, 6503–6517, https://doi.org/10.5194/bg-15-6503-2018, https://doi.org/10.5194/bg-15-6503-2018, 2018
Short summary
Short summary
Diatoms can dominate the Arctic Ocean spring bloom, the key annual event for regional food webs. Diatom growth requires silicon and this nutrient has been declining in the European Arctic. This study communicates an unprecedented combination of silicon-cycling measurements around Svalbard during the spring and shows that dissolved silicon can limit diatom production. These results suggest an important coupling of silicon and carbon cycling during the spring bloom in the European Arctic.
Mallory A. Sea, Neus Garcias-Bonet, Vincent Saderne, and Carlos M. Duarte
Biogeosciences, 15, 5365–5375, https://doi.org/10.5194/bg-15-5365-2018, https://doi.org/10.5194/bg-15-5365-2018, 2018
Short summary
Short summary
Mangroves are capable of storing carbon in their roots, leaves, and in the sediment; however they can also emit carbon as greenhouse gases (GHG) to the atmosphere. In this study, we collected sediment cores and calculated GHG flux rates from mangrove forests along the Red Sea coastline. Using flux rates reported in this study, we determined that Red Sea mangroves are net carbon sinks, storing more carbon than they emit. This study provides rationale to conserve and expand Red Sea mangroves.
Aisling Fontanini, Alexandra Steckbauer, Sam Dupont, and Carlos M. Duarte
Biogeosciences, 15, 3717–3729, https://doi.org/10.5194/bg-15-3717-2018, https://doi.org/10.5194/bg-15-3717-2018, 2018
Short summary
Short summary
Invertebrate species of the Gullmar Fjord (Sweden) were exposed to four different treatments (high/low oxygen and low/high CO2) and respiration measured. Respiration responses of species of contrasting habitats and life-history strategies to single and multiple stressors was evaluated. Results show that the responses of the respiration were highly species specific as we observed both synergetic as well as antagonistic responses, and neither phylum nor habitat explained trends in respiration.
Francesca Iuculano, Carlos Maria Duarte, Núria Marbà, and Susana Agustí
Biogeosciences, 14, 5069–5075, https://doi.org/10.5194/bg-14-5069-2017, https://doi.org/10.5194/bg-14-5069-2017, 2017
Carlos M. Duarte
Biogeosciences, 14, 301–310, https://doi.org/10.5194/bg-14-301-2017, https://doi.org/10.5194/bg-14-301-2017, 2017
Short summary
Short summary
Vegetated coastal habitats (mangroves, seagrass meadows, salt marshes and macroalgal beds) are key contributors to the marine carbon budget, but remain hidden in the representation of the coastal carbon budget. While they have been acknowledged to play an important role in carbon burial, this is small compared to the export flow, which may lead to carbon sequestration beyond these habitats. The carbon fluxes supported by vegetated coastal habitats are globally relevant.
Alexandra Coello-Camba and Susana Agustí
Biogeosciences Discuss., https://doi.org/10.5194/bg-2016-424, https://doi.org/10.5194/bg-2016-424, 2016
Revised manuscript not accepted
Short summary
Short summary
We demonstrated that the effects of increased temperature and pCO2
on the silicification process in diatoms are interactive, showing a temperature dependent capacity of increased pCO2 to buffer the negative effects of warming. Therefore, as long as the increase in temperature does not surpass the buffering capacity of pCO2, the increase of this latter stressor will help diatoms to retain their sinking properties, preserving their role in the biogeochemical
cycles of silica and carbon.
Oscar Serrano, Paul S. Lavery, Carlos M. Duarte, Gary A. Kendrick, Antoni Calafat, Paul H. York, Andy Steven, and Peter I. Macreadie
Biogeosciences, 13, 4915–4926, https://doi.org/10.5194/bg-13-4915-2016, https://doi.org/10.5194/bg-13-4915-2016, 2016
Short summary
Short summary
We explored the relationship between organic carbon and mud (i.e. silt and clay) contents in seagrass ecosystems to address whether mud can be used to predict soil C content, thereby enabling robust scaling up exercises at a low cost as part of blue carbon stock assessments. We show that mud is not a universal proxy for blue carbon content in seagrass ecosystems, but it can be used to estimate soil Corg content when low biomass seagrass species (i.e. Zostera, Halodule and Halophila) are present.
Oscar Serrano, Aurora M. Ricart, Paul S. Lavery, Miguel Angel Mateo, Ariane Arias-Ortiz, Pere Masque, Mohammad Rozaimi, Andy Steven, and Carlos M. Duarte
Biogeosciences, 13, 4581–4594, https://doi.org/10.5194/bg-13-4581-2016, https://doi.org/10.5194/bg-13-4581-2016, 2016
Short summary
Short summary
The recent focus on carbon (C) trading has intensified interest in "Blue Carbon" – C sequestered by coastal vegetation. However, the factors influencing C storage are poorly understood. The patterns found in this study support that C storage in Posidonia seagrass soils is influenced by interactions of biological, chemical and physical factors within the meadow. We conclude that there is a need to improve global estimates accounting for biogeochemical factors driving variability within habitats.
D. Krause-Jensen, C. M. Duarte, I. E. Hendriks, L. Meire, M. E. Blicher, N. Marbà, and M. K. Sejr
Biogeosciences, 12, 4895–4911, https://doi.org/10.5194/bg-12-4895-2015, https://doi.org/10.5194/bg-12-4895-2015, 2015
Short summary
Short summary
The Arctic Ocean is considered the most vulnerable ecosystem to ocean acidification (OA), but very little information is available on natural variability of pH in the Arctic coastal zone. We report pH variability at various scales in a Greenland fjord. Variability ranged up to 0.2-0.3 pH units horizontally and vertically in the fjord, between seasons and on diel basis in kelp forests and was extreme in tidal pools. Overall, primary producers played a fundamental role in producing mosaics of pH.
A. N. Schwier, C. Rose, E. Asmi, A. M. Ebling, W. M. Landing, S. Marro, M.-L. Pedrotti, A. Sallon, F. Iuculano, S. Agusti, A. Tsiola, P. Pitta, J. Louis, C. Guieu, F. Gazeau, and K. Sellegri
Atmos. Chem. Phys., 15, 7961–7976, https://doi.org/10.5194/acp-15-7961-2015, https://doi.org/10.5194/acp-15-7961-2015, 2015
Short summary
Short summary
The effect of ocean acidification and changing water conditions on primary (and secondary) marine aerosol emissions is not well understood on a regional or a global scale. To investigate this effect, we deployed mesocosms in the Mediterranean Sea for several weeks during both winter pre-bloom and summer oligotrophic conditions and subjected them to various levels of CO2. We observed larger effects due to the differences between a pre-bloom and oligotrophic environment than due to CO2 levels.
S. Lasternas and S. Agustí
Biogeosciences, 11, 6377–6387, https://doi.org/10.5194/bg-11-6377-2014, https://doi.org/10.5194/bg-11-6377-2014, 2014
L. S. García-Corral, E. Barber, A. Regaudie-de-Gioux, S. Sal, J. M. Holding, S. Agustí, N. Navarro, P. Serret, P. Mozetič, and C. M. Duarte
Biogeosciences, 11, 4529–4540, https://doi.org/10.5194/bg-11-4529-2014, https://doi.org/10.5194/bg-11-4529-2014, 2014
S. Ruiz-Halpern, M. Ll. Calleja, J. Dachs, S. Del Vento, M. Pastor, M. Palmer, S. Agustí, and C. M. Duarte
Biogeosciences, 11, 2755–2770, https://doi.org/10.5194/bg-11-2755-2014, https://doi.org/10.5194/bg-11-2755-2014, 2014
I. E. Hendriks, Y. S. Olsen, L. Ramajo, L. Basso, A. Steckbauer, T. S. Moore, J. Howard, and C. M. Duarte
Biogeosciences, 11, 333–346, https://doi.org/10.5194/bg-11-333-2014, https://doi.org/10.5194/bg-11-333-2014, 2014
S. Lasternas, M. Piedeleu, P. Sangrà, C. M. Duarte, and S. Agustí
Biogeosciences, 10, 2129–2143, https://doi.org/10.5194/bg-10-2129-2013, https://doi.org/10.5194/bg-10-2129-2013, 2013
R. Vaquer-Sunyer, C. M. Duarte, J. Holding, A. Regaudie-de-Gioux, L. S. García-Corral, M. Reigstad, and P. Wassmann
Biogeosciences, 10, 1451–1469, https://doi.org/10.5194/bg-10-1451-2013, https://doi.org/10.5194/bg-10-1451-2013, 2013
M. Alcaraz, R. Almeda, E. Saiz, A. Calbet, C. M. Duarte, S. Agustí, R. Santiago, and A. Alonso
Biogeosciences, 10, 689–697, https://doi.org/10.5194/bg-10-689-2013, https://doi.org/10.5194/bg-10-689-2013, 2013
Related subject area
Biodiversity and Ecosystem Function: Marine
Building your own mountain: the effects, limits, and drawbacks of cold-water coral ecosystem engineering
Phytoplankton response to increased nickel in the context of ocean alkalinity enhancement
Diversity and density relationships between lebensspuren and tracemaking organisms: a study case from abyssal northwest Pacific
Technical note: An autonomous flow-through salinity and temperature perturbation mesocosm system for multi-stressor experiments
Reviews and syntheses: The clam before the storm – a meta-analysis showing the effect of combined climate change stressors on bivalves
A step towards measuring connectivity in the deep sea: elemental fingerprints of mollusk larval shells discriminate hydrothermal vent sites
Simulated terrestrial runoff shifts the metabolic balance of a coastal Mediterranean plankton community toward heterotrophy
Structural complexity and benthic metabolism: resolving the links between carbon cycling and biodiversity in restored seagrass meadows
Contrasting carbon cycling in the benthic food webs between river-fed, high-energy canyon and upper continental slope
Spawner weight and ocean temperature drive Allee effect dynamics in Atlantic cod, Gadus morhua: inherent and emergent density regulation
The bottom mixed layer depth as an indicator of subsurface Chlorophyll a distribution
Ideas and perspectives: The fluctuating nature of oxygen shapes the ecology of aquatic habitats and their biogeochemical cycles – the aquatic oxyscape
Impact of deoxygenation and warming on global marine species in the 21st century
A critical trade-off between nitrogen quota and growth allows Coccolithus braarudii life cycle phases’ to exploit varying environment
Ecological divergence of a mesocosm in an eastern boundary upwelling system assessed with multi-marker environmental DNA metabarcoding
Unique benthic foraminiferal communities (stained) in diverse environments of sub-Antarctic fjords, South Georgia
Upwelled plankton community modulates surface bloom succession and nutrient availability in a natural plankton assemblage
First phytoplankton community assessment of the Kong Håkon VII Hav, Southern Ocean, during austral autumn
Early life stages of a Mediterranean coral are vulnerable to ocean warming and acidification
Mediterranean seagrasses as carbon sinks: methodological and regional differences
Contrasting vertical distributions of recent planktic foraminifera off Indonesia during the southeast monsoon: implications for paleoceanographic reconstructions
The onset of the spring phytoplankton bloom in the coastal North Sea supports the Disturbance Recovery Hypothesis
Species richness and functional attributes of fish assemblages across a large-scale salinity gradient in shallow coastal areas
Modeling the growth and sporulation dynamics of the macroalga Ulva in mixed-age populations in cultivation and the formation of green tides
Spatial changes in community composition and food web structure of mesozooplankton across the Adriatic basin (Mediterranean Sea)
Predicting mangrove forest dynamics across a soil salinity gradient using an individual-based vegetation model linked with plant hydraulics
Will daytime community calcification reflect reef accretion on future, degraded coral reefs?
Modeling polar marine ecosystem functions guided by bacterial physiological and taxonomic traits
Quantifying functional consequences of habitat degradation on a Caribbean coral reef
Enhanced chlorophyll-a concentration in the wake of Sable Island, eastern Canada, revealed by two decades of satellite observations: a response to grey seal population dynamics?
Population dynamics and reproduction strategies of planktonic foraminifera in the open ocean
The Bouraké semi-enclosed lagoon (New Caledonia) – a natural laboratory to study the lifelong adaptation of a coral reef ecosystem to extreme environmental conditions
Atypical, high-diversity assemblages of foraminifera in a mangrove estuary in northern Brazil
Permanent ectoplasmic structures in deep-sea Cibicides and Cibicidoides taxa – long-term observations at in situ pressure
Ideas and perspectives: Ushering the Indian Ocean into the UN Decade of Ocean Science for Sustainable Development (UNDOSSD) through marine ecosystem research and operational services – an early career's take
Persistent effects of sand extraction on habitats and associated benthic communities in the German Bight
Spatial patterns of ectoenzymatic kinetics in relation to biogeochemical properties in the Mediterranean Sea and the concentration of the fluorogenic substrate used
A 2-decade (1988–2009) record of diatom fluxes in the Mauritanian coastal upwelling: impact of low-frequency forcing and a two-step shift in the species composition
Review and syntheses: Impacts of turbidity flows on deep-sea benthic communities
Ideas and perspectives: When ocean acidification experiments are not the same, repeatability is not tested
The effect of the salinity, light regime and food source on carbon and nitrogen uptake in a benthic foraminifer
Changes in population depth distribution and oxygen stratification are involved in the current low condition of the eastern Baltic Sea cod (Gadus morhua)
Effects of spatial variability on the exposure of fish to hypoxia: a modeling analysis for the Gulf of Mexico
Plant genotype determines biomass response to flooding frequency in tidal wetlands
Factors controlling the competition between Phaeocystis and diatoms in the Southern Ocean and implications for carbon export fluxes
Characterization of particle-associated and free-living bacterial and archaeal communities along the water columns of the South China Sea
Adult life strategy affects distribution patterns in abyssal isopods – implications for conservation in Pacific nodule areas
Diversity and distribution of nitrogen fixation genes in the oxygen minimum zones of the world oceans
Structure and function of epipelagic mesozooplankton and their response to dust deposition events during the spring PEACETIME cruise in the Mediterranean Sea
Distribution of planktonic foraminifera in the subtropical South Atlantic: depth hierarchy of controlling factors
Anna-Selma van der Kaaden, Sandra R. Maier, Siluo Chen, Laurence H. De Clippele, Evert de Froe, Theo Gerkema, Johan van de Koppel, Furu Mienis, Christian Mohn, Max Rietkerk, Karline Soetaert, and Dick van Oevelen
Biogeosciences, 21, 973–992, https://doi.org/10.5194/bg-21-973-2024, https://doi.org/10.5194/bg-21-973-2024, 2024
Short summary
Short summary
Combining hydrodynamic simulations and annotated videos, we separated which hydrodynamic variables that determine reef cover are engineered by cold-water corals and which are not. Around coral mounds, hydrodynamic zones seem to create a typical reef zonation, restricting corals from moving deeper (the expected response to climate warming). But non-engineered downward velocities in winter (e.g. deep winter mixing) seem more important for coral reef growth than coral engineering.
Xiaoke Xin, Giulia Faucher, and Ulf Riebesell
Biogeosciences, 21, 761–772, https://doi.org/10.5194/bg-21-761-2024, https://doi.org/10.5194/bg-21-761-2024, 2024
Short summary
Short summary
Ocean alkalinity enhancement (OAE) is a promising approach to remove CO2 by accelerating natural rock weathering. However, some of the alkaline substances contain trace metals which could be toxic to marine life. By exposing three representative phytoplankton species to Ni released from alkaline materials, we observed varying responses of phytoplankton to nickel concentrations, suggesting caution should be taken and toxic thresholds should be avoided in OAE with Ni-rich materials.
Olmo Miguez-Salas, Angelika Brandt, Henry Knauber, and Torben Riehl
Biogeosciences, 21, 641–655, https://doi.org/10.5194/bg-21-641-2024, https://doi.org/10.5194/bg-21-641-2024, 2024
Short summary
Short summary
In the deep sea, the interaction between benthic fauna (tracemakers) and substrate can be preserved as traces (i.e. lebensspuren), which are common features of seafloor landscapes, rendering them promising proxies for inferring biodiversity from marine images. No general correlation was observed between traces and benthic fauna. However, a local correlation was observed between specific stations depending on unknown tracemakers, tracemaker behaviour, and lebensspuren morphotypes.
Cale A. Miller, Pierre Urrutti, Jean-Pierre Gattuso, Steeve Comeau, Anaïs Lebrun, Samir Alliouane, Robert W. Schlegel, and Frédéric Gazeau
Biogeosciences, 21, 315–333, https://doi.org/10.5194/bg-21-315-2024, https://doi.org/10.5194/bg-21-315-2024, 2024
Short summary
Short summary
This work describes an experimental system that can replicate and manipulate environmental conditions in marine or aquatic systems. Here, we show how the temperature and salinity of seawater delivered from a fjord is manipulated to experimental tanks on land. By constantly monitoring temperature and salinity in each tank via a computer program, the system continuously adjusts automated flow valves to ensure the seawater in each tank matches the targeted experimental conditions.
Rachel A. Kruft Welton, George Hoppit, Daniela N. Schmidt, James D. Witts, and Benjamin C. Moon
Biogeosciences, 21, 223–239, https://doi.org/10.5194/bg-21-223-2024, https://doi.org/10.5194/bg-21-223-2024, 2024
Short summary
Short summary
We conducted a meta-analysis of known experimental literature examining how marine bivalve growth rates respond to climate change. Growth is usually negatively impacted by climate change. Bivalve eggs/larva are generally more vulnerable than either juveniles or adults. Available data on the bivalve response to climate stressors are biased towards early growth stages (commercially important in the Global North), and many families have only single experiments examining climate change impacts.
Vincent Mouchi, Christophe Pecheyran, Fanny Claverie, Cécile Cathalot, Marjolaine Matabos, Yoan Germain, Olivier Rouxel, Didier Jollivet, Thomas Broquet, and Thierry Comtet
Biogeosciences, 21, 145–160, https://doi.org/10.5194/bg-21-145-2024, https://doi.org/10.5194/bg-21-145-2024, 2024
Short summary
Short summary
The impact of deep-sea mining will depend critically on the ability of larval dispersal of hydrothermal mollusks to connect and replenish natural populations. However, assessing connectivity is extremely challenging, especially in the deep sea. Here, we investigate the potential of using the chemical composition of larval shells to discriminate larval origins between multiple hydrothermal sites in the southwest Pacific. Our results confirm that this method can be applied with high accuracy.
Tanguy Soulié, Francesca Vidussi, Justine Courboulès, Marie Heydon, Sébastien Mas, Florian Voron, Carolina Cantoni, Fabien Joux, and Behzad Mostajir
EGUsphere, https://doi.org/10.5194/egusphere-2023-2782, https://doi.org/10.5194/egusphere-2023-2782, 2023
Short summary
Short summary
Due to climate change, it is projected that extreme rainfall events, bringing terrestrial matter into coastal seas, will occur more frequently in the Mediterranean region. To test the effects of runoffs of terrestrial matter on plankton communities from Mediterranean coastal waters, an in situ mesocosm experiment was conducted. The simulated runoff affected key processes mediated by plankton, such as primary production and respiration, suggesting major consequences of such events.
Theodor Kindeberg, Karl M. Attard, Jana Hüller, Julia Müller, Cintia O. Quintana, and Eduardo Infantes
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-173, https://doi.org/10.5194/bg-2023-173, 2023
Revised manuscript accepted for BG
Short summary
Short summary
Seagrass meadows are hotspots for biodiversity and productivity and planting seagrass is proposed as a tool for mitigating biodiversity loss and climate change. We assessed seagrass planted in different years and found that benthic oxygen and carbon fluxes increased as the seabed developed from bare sediments to a mature seagrass meadow. This increase was partly linked to the diversity of colonizing algae which increased the light-use efficiency of the seagrass meadow community.
Chueh-Chen Tung, Yu-Shih Lin, Jian-Xiang Liao, Tzu-Hsuan Tu, James T. Liu, Li-Hung Lin, Pei-Ling Wang, and Chih-Lin Wei
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-161, https://doi.org/10.5194/bg-2023-161, 2023
Revised manuscript accepted for BG
Short summary
Short summary
This study contrasts seabed food webs between a river-fed, high-energy canyon and the nearby slope. We show higher organic carbon (OC) flows through the canyon than the slope. Bacteria dominated the canyon, while seabed fauna contributed more to the slope food web. Due to frequent perturbation, the canyon had a lower faunal stock and OC recycling. Only 1 % of the seabed OC flux enters the canyon food web, suggesting a significant role of the river-fed canyon in transporting OC to the deep sea.
Anna-Marie Winter, Nadezda Vasilyeva, and Artem Vladimirov
Biogeosciences, 20, 3683–3716, https://doi.org/10.5194/bg-20-3683-2023, https://doi.org/10.5194/bg-20-3683-2023, 2023
Short summary
Short summary
There is an increasing number of fish in poor state, and many do not recover, even when fishing pressure is ceased. An Allee effect can hinder population recovery because it suppresses the fish's productivity at low abundance. With a model fitted to 17 Atlantic cod stocks, we find that ocean warming and fishing can cause an Allee effect. If present, the Allee effect hinders fish recovery. This shows that Allee effects are dynamic, not uncommon, and calls for precautionary management measures.
Arianna Zampollo, Thomas Cornulier, Rory O'Hara Murray, Jacqueline Fiona Tweddle, James Dunning, and Beth E. Scott
Biogeosciences, 20, 3593–3611, https://doi.org/10.5194/bg-20-3593-2023, https://doi.org/10.5194/bg-20-3593-2023, 2023
Short summary
Short summary
This paper highlights the use of the bottom mixed layer depth (BMLD: depth between the end of the pycnocline and the mixed layer below) to investigate subsurface Chlorophyll a (a proxy of primary production) in temperate stratified shelf waters. The strict correlation between subsurface Chl a and BMLD becomes relevant in shelf-productive waters where multiple stressors (e.g. offshore infrastructure) will change the stratification--mixing balance and related carbon fluxes.
Marco Fusi, Sylvain Rigaud, Giovanna Guadagnin, Alberto Barausse, Ramona Marasco, Daniele Daffonchio, Julie Régis, Louison Huchet, Capucine Camin, Laura Pettit, Cristina Vina-Herbon, and Folco Giomi
Biogeosciences, 20, 3509–3521, https://doi.org/10.5194/bg-20-3509-2023, https://doi.org/10.5194/bg-20-3509-2023, 2023
Short summary
Short summary
Oxygen availability in marine water and freshwater is very variable at daily and seasonal scales. The dynamic nature of oxygen fluctuations has important consequences for animal and microbe physiology and ecology, yet it is not fully understood. In this paper, we showed the heterogeneous nature of the aquatic oxygen landscape, which we defined here as the
oxyscape, and we addressed the importance of considering the oxyscape in the modelling and managing of aquatic ecosystems.
Anne L. Morée, Tayler M. Clarke, William W. L. Cheung, and Thomas L. Frölicher
Biogeosciences, 20, 2425–2454, https://doi.org/10.5194/bg-20-2425-2023, https://doi.org/10.5194/bg-20-2425-2023, 2023
Short summary
Short summary
Ocean temperature and oxygen shape marine habitats together with species’ characteristics. We calculated the impacts of projected 21st-century warming and oxygen loss on the contemporary habitat volume of 47 marine species and described the drivers of these impacts. Most species lose less than 5 % of their habitat at 2 °C of global warming, but some species incur losses 2–3 times greater than that. We also calculate which species may be most vulnerable to climate change and why this is the case.
Joost de Vries, Fanny Monteiro, Gerald Langer, Colin Brownlee, and Glen Wheeler
EGUsphere, https://doi.org/10.5194/egusphere-2023-880, https://doi.org/10.5194/egusphere-2023-880, 2023
Short summary
Short summary
Calcifying phytoplankton (coccolithophores) utilize a life cycle in which they can grow and divide in two different phases. These two phases (HET and HOL) vary in terms of their physiology and distributions, with many unknowns about what the key differences are. Using a combination of lab experiments and model simulations we find that nutrient storage is a critical difference between the two phases, and that this difference allows them to inhabit different nitrogen input regimes.
Markus A. Min, David M. Needham, Sebastian Sudek, Nathan Kobun Truelove, Kathleen J. Pitz, Gabriela M. Chavez, Camille Poirier, Bente Gardeler, Elisabeth von der Esch, Andrea Ludwig, Ulf Riebesell, Alexandra Z. Worden, and Francisco P. Chavez
Biogeosciences, 20, 1277–1298, https://doi.org/10.5194/bg-20-1277-2023, https://doi.org/10.5194/bg-20-1277-2023, 2023
Short summary
Short summary
Emerging molecular methods provide new ways of understanding how marine communities respond to changes in ocean conditions. Here, environmental DNA was used to track the temporal evolution of biological communities in the Peruvian coastal upwelling system and in an adjacent enclosure where upwelling was simulated. We found that the two communities quickly diverged, with the open ocean being one found during upwelling and the enclosure evolving to one found under stratified conditions.
Wojciech Majewski, Witold Szczuciński, and Andrew J. Gooday
Biogeosciences, 20, 523–544, https://doi.org/10.5194/bg-20-523-2023, https://doi.org/10.5194/bg-20-523-2023, 2023
Short summary
Short summary
We studied foraminifera living in the fjords of South Georgia, a sub-Antarctic island sensitive to climate change. As conditions in water and on the seafloor vary, different associations of these microorganisms dominate far inside, in the middle, and near fjord openings. Assemblages in inner and middle parts of fjords are specific to South Georgia, but they may become widespread with anticipated warming. These results are important for interpretating fossil records and monitoring future change.
Allanah Joy Paul, Lennart Thomas Bach, Javier Arístegui, Elisabeth von der Esch, Nauzet Hernández-Hernández, Jonna Piiparinen, Laura Ramajo, Kristian Spilling, and Ulf Riebesell
Biogeosciences, 19, 5911–5926, https://doi.org/10.5194/bg-19-5911-2022, https://doi.org/10.5194/bg-19-5911-2022, 2022
Short summary
Short summary
We investigated how different deep water chemistry and biology modulate the response of surface phytoplankton communities to upwelling in the Peruvian coastal zone. Our results show that the most influential drivers were the ratio of inorganic nutrients (N : P) and the microbial community present in upwelling source water. These led to unexpected and variable development in the phytoplankton assemblage that could not be predicted by the amount of inorganic nutrients alone.
Hanna M. Kauko, Philipp Assmy, Ilka Peeken, Magdalena Różańska-Pluta, Józef M. Wiktor, Gunnar Bratbak, Asmita Singh, Thomas J. Ryan-Keogh, and Sebastien Moreau
Biogeosciences, 19, 5449–5482, https://doi.org/10.5194/bg-19-5449-2022, https://doi.org/10.5194/bg-19-5449-2022, 2022
Short summary
Short summary
This article studies phytoplankton (microscopic
plantsin the ocean capable of photosynthesis) in Kong Håkon VII Hav in the Southern Ocean. Different species play different roles in the ecosystem, and it is therefore important to assess the species composition. We observed that phytoplankton blooms in this area are formed by large diatoms with strong silica armors, which can lead to high silica (and sometimes carbon) export to depth and be important prey for krill.
Chloe Carbonne, Steeve Comeau, Phoebe T. W. Chan, Keyla Plichon, Jean-Pierre Gattuso, and Núria Teixidó
Biogeosciences, 19, 4767–4777, https://doi.org/10.5194/bg-19-4767-2022, https://doi.org/10.5194/bg-19-4767-2022, 2022
Short summary
Short summary
For the first time, our study highlights the synergistic effects of a 9-month warming and acidification combined stress on the early life stages of a Mediterranean azooxanthellate coral, Astroides calycularis. Our results predict a decrease in dispersion, settlement, post-settlement linear extention, budding and survival under future global change and that larvae and recruits of A. calycularis are stages of interest for this Mediterranean coral resistance, resilience and conservation.
Iris E. Hendriks, Anna Escolano-Moltó, Susana Flecha, Raquel Vaquer-Sunyer, Marlene Wesselmann, and Núria Marbà
Biogeosciences, 19, 4619–4637, https://doi.org/10.5194/bg-19-4619-2022, https://doi.org/10.5194/bg-19-4619-2022, 2022
Short summary
Short summary
Seagrasses are marine plants with the capacity to act as carbon sinks due to their high primary productivity, using carbon for growth. This capacity can play a key role in climate change mitigation. We compiled and published data showing that two Mediterranean seagrass species have different metabolic rates, while the study method influences the rates of the measurements. Most communities act as carbon sinks, while the western basin might be more productive than the eastern Mediterranean.
Raúl Tapia, Sze Ling Ho, Hui-Yu Wang, Jeroen Groeneveld, and Mahyar Mohtadi
Biogeosciences, 19, 3185–3208, https://doi.org/10.5194/bg-19-3185-2022, https://doi.org/10.5194/bg-19-3185-2022, 2022
Short summary
Short summary
We report census counts of planktic foraminifera in depth-stratified plankton net samples off Indonesia. Our results show that the vertical distribution of foraminifera species routinely used in paleoceanographic reconstructions varies in hydrographically distinct regions, likely in response to food availability. Consequently, the thermal gradient based on mixed layer and thermocline dwellers also differs for these regions, suggesting potential implications for paleoceanographic reconstructions.
Ricardo González-Gil, Neil S. Banas, Eileen Bresnan, and Michael R. Heath
Biogeosciences, 19, 2417–2426, https://doi.org/10.5194/bg-19-2417-2022, https://doi.org/10.5194/bg-19-2417-2022, 2022
Short summary
Short summary
In oceanic waters, the accumulation of phytoplankton biomass in winter, when light still limits growth, is attributed to a decrease in grazing as the mixed layer deepens. However, in coastal areas, it is not clear whether winter biomass can accumulate without this deepening. Using 21 years of weekly data, we found that in the Scottish coastal North Sea, the seasonal increase in light availability triggers the accumulation of phytoplankton biomass in winter, when light limitation is strongest.
Birgit Koehler, Mårten Erlandsson, Martin Karlsson, and Lena Bergström
Biogeosciences, 19, 2295–2312, https://doi.org/10.5194/bg-19-2295-2022, https://doi.org/10.5194/bg-19-2295-2022, 2022
Short summary
Short summary
Understanding species richness patterns remains a challenge for biodiversity management. We estimated fish species richness over a coastal salinity gradient (3–32) with a method that allowed comparing data from various sources. Species richness was 3-fold higher at high vs. low salinity, and salinity influenced species’ habitat preference, mobility and feeding type. If climate change causes upper-layer freshening of the Baltic Sea, further shifts along the identified patterns may be expected.
Uri Obolski, Thomas Wichard, Alvaro Israel, Alexander Golberg, and Alexander Liberzon
Biogeosciences, 19, 2263–2271, https://doi.org/10.5194/bg-19-2263-2022, https://doi.org/10.5194/bg-19-2263-2022, 2022
Short summary
Short summary
The algal genus Ulva plays a major role in coastal ecosystems worldwide and is a promising prospect as an seagriculture crop. A substantial hindrance to cultivating Ulva arises from sudden sporulation, leading to biomass loss. This process is not yet well understood. Here, we characterize the dynamics of Ulva growth, considering the potential impact of sporulation inhibitors, using a mathematical model. Our findings are an essential step towards understanding the dynamics of Ulva growth.
Emanuela Fanelli, Samuele Menicucci, Sara Malavolti, Andrea De Felice, and Iole Leonori
Biogeosciences, 19, 1833–1851, https://doi.org/10.5194/bg-19-1833-2022, https://doi.org/10.5194/bg-19-1833-2022, 2022
Short summary
Short summary
Zooplankton play a key role in marine ecosystems, forming the base of the marine food web and a link between primary producers and higher-order consumers, such as fish. This aspect is crucial in the Adriatic basin, one of the most productive and overexploited areas of the Mediterranean Sea. A better understanding of community and food web structure and their response to water mass changes is essential under a global warming scenario, as zooplankton are sensitive to climate change.
Masaya Yoshikai, Takashi Nakamura, Rempei Suwa, Sahadev Sharma, Rene Rollon, Jun Yasuoka, Ryohei Egawa, and Kazuo Nadaoka
Biogeosciences, 19, 1813–1832, https://doi.org/10.5194/bg-19-1813-2022, https://doi.org/10.5194/bg-19-1813-2022, 2022
Short summary
Short summary
This study presents a new individual-based vegetation model to investigate salinity control on mangrove productivity. The model incorporates plant hydraulics and tree competition and predicts unique and complex patterns of mangrove forest structures that vary across soil salinity gradients. The presented model does not hold an empirical expression of salinity influence on productivity and thus may provide a better understanding of mangrove forest dynamics in future climate change.
Coulson A. Lantz, William Leggat, Jessica L. Bergman, Alexander Fordyce, Charlotte Page, Thomas Mesaglio, and Tracy D. Ainsworth
Biogeosciences, 19, 891–906, https://doi.org/10.5194/bg-19-891-2022, https://doi.org/10.5194/bg-19-891-2022, 2022
Short summary
Short summary
Coral bleaching events continue to drive the degradation of coral reefs worldwide. In this study we measured rates of daytime coral reef community calcification and photosynthesis during a reef-wide bleaching event. Despite a measured decline in coral health across several taxa, there was no change in overall daytime community calcification and photosynthesis. These findings highlight potential limitations of these community-level metrics to reflect actual changes in coral health.
Hyewon Heather Kim, Jeff S. Bowman, Ya-Wei Luo, Hugh W. Ducklow, Oscar M. Schofield, Deborah K. Steinberg, and Scott C. Doney
Biogeosciences, 19, 117–136, https://doi.org/10.5194/bg-19-117-2022, https://doi.org/10.5194/bg-19-117-2022, 2022
Short summary
Short summary
Heterotrophic marine bacteria are tiny organisms responsible for taking up organic matter in the ocean. Using a modeling approach, this study shows that characteristics (taxonomy and physiology) of bacteria are associated with a subset of ecological processes in the coastal West Antarctic Peninsula region, a system susceptible to global climate change. This study also suggests that bacteria will become more active, in particular large-sized cells, in response to changing climates in the region.
Alice E. Webb, Didier M. de Bakker, Karline Soetaert, Tamara da Costa, Steven M. A. C. van Heuven, Fleur C. van Duyl, Gert-Jan Reichart, and Lennart J. de Nooijer
Biogeosciences, 18, 6501–6516, https://doi.org/10.5194/bg-18-6501-2021, https://doi.org/10.5194/bg-18-6501-2021, 2021
Short summary
Short summary
The biogeochemical behaviour of shallow reef communities is quantified to better understand the impact of habitat degradation and species composition shifts on reef functioning. The reef communities investigated barely support reef functions that are usually ascribed to conventional coral reefs, and the overall biogeochemical behaviour is found to be similar regardless of substrate type. This suggests a decrease in functional diversity which may therefore limit services provided by this reef.
Emmanuel Devred, Andrea Hilborn, and Cornelia Elizabeth den Heyer
Biogeosciences, 18, 6115–6132, https://doi.org/10.5194/bg-18-6115-2021, https://doi.org/10.5194/bg-18-6115-2021, 2021
Short summary
Short summary
A theoretical model of grey seal seasonal abundance on Sable Island (SI) coupled with chlorophyll-a concentration [chl-a] measured by satellite revealed the impact of seal nitrogen fertilization on the surrounding waters of SI, Canada. The increase in seals from about 100 000 in 2003 to about 360 000 in 2018 during the breeding season is consistent with an increase in [chl-a] leeward of SI. The increase in seal abundance explains 8 % of the [chl-a] increase.
Julie Meilland, Michael Siccha, Maike Kaffenberger, Jelle Bijma, and Michal Kucera
Biogeosciences, 18, 5789–5809, https://doi.org/10.5194/bg-18-5789-2021, https://doi.org/10.5194/bg-18-5789-2021, 2021
Short summary
Short summary
Planktonic foraminifera population dynamics has long been assumed to be controlled by synchronous reproduction and ontogenetic vertical migration (OVM). Due to contradictory observations, this concept became controversial. We here test it in the Atlantic ocean for four species of foraminifera representing the main clades. Our observations support the existence of synchronised reproduction and OVM but show that more than half of the population does not follow the canonical trajectory.
Federica Maggioni, Mireille Pujo-Pay, Jérome Aucan, Carlo Cerrano, Barbara Calcinai, Claude Payri, Francesca Benzoni, Yves Letourneur, and Riccardo Rodolfo-Metalpa
Biogeosciences, 18, 5117–5140, https://doi.org/10.5194/bg-18-5117-2021, https://doi.org/10.5194/bg-18-5117-2021, 2021
Short summary
Short summary
Based on current experimental evidence, climate change will affect up to 90 % of coral reefs worldwide. The originality of this study arises from our recent discovery of an exceptional study site where environmental conditions (temperature, pH, and oxygen) are even worse than those forecasted for the future.
While these conditions are generally recognized as unfavorable for marine life, we found a rich and abundant coral reef thriving under such extreme environmental conditions.
Nisan Sariaslan and Martin R. Langer
Biogeosciences, 18, 4073–4090, https://doi.org/10.5194/bg-18-4073-2021, https://doi.org/10.5194/bg-18-4073-2021, 2021
Short summary
Short summary
Analyses of foraminiferal assemblages from the Mamanguape mangrove estuary (northern Brazil) revealed highly diverse, species-rich, and structurally complex biotas. The atypical fauna resembles shallow-water offshore assemblages and are interpreted to be the result of highly saline ocean waters penetrating deep into the estuary. The findings contrast with previous studies, have implications for the fossil record, and provide novel perspectives for reconstructing mangrove environments.
Jutta E. Wollenburg, Jelle Bijma, Charlotte Cremer, Ulf Bickmeyer, and Zora Mila Colomba Zittier
Biogeosciences, 18, 3903–3915, https://doi.org/10.5194/bg-18-3903-2021, https://doi.org/10.5194/bg-18-3903-2021, 2021
Short summary
Short summary
Cultured at in situ high-pressure conditions Cibicides and Cibicidoides taxa develop lasting ectoplasmic structures that cannot be retracted or resorbed. An ectoplasmic envelope surrounds their test and may protect the shell, e.g. versus carbonate aggressive bottom water conditions. Ectoplasmic roots likely anchor the specimens in areas of strong bottom water currents, trees enable them to elevate themselves above ground, and twigs stabilize and guide the retractable pseudopodial network.
Kumar Nimit
Biogeosciences, 18, 3631–3635, https://doi.org/10.5194/bg-18-3631-2021, https://doi.org/10.5194/bg-18-3631-2021, 2021
Short summary
Short summary
The Indian Ocean Rim hosts many of the underdeveloped and emerging economies that depend on ocean resources for the livelihood of millions. Operational ocean information services cater to the requirements of resource managers and end-users to efficiently harness resources, mitigate threats and ensure safety. This paper outlines existing tools and explores the ongoing research that has the potential to convert the findings into operational services in the near- to midterm.
Finn Mielck, Rune Michaelis, H. Christian Hass, Sarah Hertel, Caroline Ganal, and Werner Armonies
Biogeosciences, 18, 3565–3577, https://doi.org/10.5194/bg-18-3565-2021, https://doi.org/10.5194/bg-18-3565-2021, 2021
Short summary
Short summary
Marine sand mining is becoming more and more important to nourish fragile coastlines that face global change. We investigated the largest sand extraction site in the German Bight. The study reveals that after more than 35 years of mining, the excavation pits are still detectable on the seafloor while the sediment composition has largely changed. The organic communities living in and on the seafloor were strongly decimated, and no recovery is observable towards previous conditions.
France Van Wambeke, Elvira Pulido, Philippe Catala, Julie Dinasquet, Kahina Djaoudi, Anja Engel, Marc Garel, Sophie Guasco, Barbara Marie, Sandra Nunige, Vincent Taillandier, Birthe Zäncker, and Christian Tamburini
Biogeosciences, 18, 2301–2323, https://doi.org/10.5194/bg-18-2301-2021, https://doi.org/10.5194/bg-18-2301-2021, 2021
Short summary
Short summary
Michaelis–Menten kinetics were determined for alkaline phosphatase, aminopeptidase and β-glucosidase in the Mediterranean Sea. Although the ectoenzymatic-hydrolysis contribution to heterotrophic prokaryotic needs was high in terms of N, it was low in terms of C. This study points out the biases in interpretation of the relative differences in activities among the three tested enzymes in regard to the choice of added concentrations of fluorogenic substrates.
Oscar E. Romero, Simon Ramondenc, and Gerhard Fischer
Biogeosciences, 18, 1873–1891, https://doi.org/10.5194/bg-18-1873-2021, https://doi.org/10.5194/bg-18-1873-2021, 2021
Short summary
Short summary
Upwelling intensity along NW Africa varies on the interannual to decadal timescale. Understanding its changes is key for the prediction of future changes of CO2 sequestration in the northeastern Atlantic. Based on a multiyear (1988–2009) sediment trap experiment at the site CBmeso, fluxes and the species composition of the diatom assemblage are presented. Our data help in establishing the scientific basis for forecasting and modeling future states of this ecosystem and its decadal changes.
Katharine T. Bigham, Ashley A. Rowden, Daniel Leduc, and David A. Bowden
Biogeosciences, 18, 1893–1908, https://doi.org/10.5194/bg-18-1893-2021, https://doi.org/10.5194/bg-18-1893-2021, 2021
Short summary
Short summary
Turbidity flows – underwater avalanches – are large-scale physical disturbances believed to have profound impacts on productivity and diversity of benthic communities in the deep sea. We reviewed published studies and found that current evidence for changes in productivity is ambiguous at best, but the influence on regional and local diversity is clearer. We suggest study design criteria that may lead to a better understanding of large-scale disturbance effects on deep-sea benthos.
Phillip Williamson, Hans-Otto Pörtner, Steve Widdicombe, and Jean-Pierre Gattuso
Biogeosciences, 18, 1787–1792, https://doi.org/10.5194/bg-18-1787-2021, https://doi.org/10.5194/bg-18-1787-2021, 2021
Short summary
Short summary
The reliability of ocean acidification research was challenged in early 2020 when a high-profile paper failed to corroborate previously observed impacts of high CO2 on the behaviour of coral reef fish. We now know the reason why: the
replicatedstudies differed in many ways. Open-minded and collaborative assessment of all research results, both negative and positive, remains the best way to develop process-based understanding of the impacts of ocean acidification on marine organisms.
Michael Lintner, Bianca Lintner, Wolfgang Wanek, Nina Keul, and Petra Heinz
Biogeosciences, 18, 1395–1406, https://doi.org/10.5194/bg-18-1395-2021, https://doi.org/10.5194/bg-18-1395-2021, 2021
Short summary
Short summary
Foraminifera are unicellular marine organisms that play an important role in the marine element cycle. Changes of environmental parameters such as salinity or temperature have a significant impact on the faunal assemblages. Our experiments show that changes in salinity immediately influence the foraminiferal activity. Also the light regime has a significant impact on carbon or nitrogen processing in foraminifera which contain no kleptoplasts.
Michele Casini, Martin Hansson, Alessandro Orio, and Karin Limburg
Biogeosciences, 18, 1321–1331, https://doi.org/10.5194/bg-18-1321-2021, https://doi.org/10.5194/bg-18-1321-2021, 2021
Short summary
Short summary
In the past 20 years the condition of the eastern Baltic cod has dropped, with large implications for the fishery. Our results show that simultaneously the cod population has moved deeper while low-oxygenated waters detrimental for cod growth have become shallower. Cod have thus dwelled more in detrimental waters, explaining the drop in its condition. This study, using long-term fish and hydrological monitoring data, evidences the impact of deoxygenation on fish biology and fishing.
Elizabeth D. LaBone, Kenneth A. Rose, Dubravko Justic, Haosheng Huang, and Lixia Wang
Biogeosciences, 18, 487–507, https://doi.org/10.5194/bg-18-487-2021, https://doi.org/10.5194/bg-18-487-2021, 2021
Short summary
Short summary
The hypoxic zone is an area of low dissolved oxygen (DO) in the Gulf of Mexico. Fish can be killed by exposure to hypoxia and can be negatively impacted by exposure to low, nonlethal DO concentrations (sublethal DO). We found that high sublethal area resulted in higher exposure and DO variability had a small effect on exposure. There was a large variation in exposure among individuals, which when combined with spatial variability of DO, can result in an underestimation of exposure when averaged.
Svenja Reents, Peter Mueller, Hao Tang, Kai Jensen, and Stefanie Nolte
Biogeosciences, 18, 403–411, https://doi.org/10.5194/bg-18-403-2021, https://doi.org/10.5194/bg-18-403-2021, 2021
Short summary
Short summary
By conducting a flooding experiment with two genotypes of the salt-marsh grass Elymus athericus, we show considerable differences in biomass response to flooding within the same species. As biomass production plays a major role in sedimentation processes and thereby salt-marsh accretion, we emphasise the importance of taking intraspecific differences into account when evaluating ecosystem resilience to accelerated sea level rise.
Cara Nissen and Meike Vogt
Biogeosciences, 18, 251–283, https://doi.org/10.5194/bg-18-251-2021, https://doi.org/10.5194/bg-18-251-2021, 2021
Short summary
Short summary
Using a regional Southern Ocean ecosystem model, we find that the relative importance of Phaeocystis and diatoms at high latitudes is controlled by iron and temperature variability, with light levels controlling the seasonal succession in coastal areas. Yet, biomass losses via aggregation and grazing matter as well. We show that the seasonal succession of Phaeocystis and diatoms impacts the seasonality of carbon export fluxes with ramifications for nutrient cycling and food web dynamics.
Jiangtao Li, Lingyuan Gu, Shijie Bai, Jie Wang, Lei Su, Bingbing Wei, Li Zhang, and Jiasong Fang
Biogeosciences, 18, 113–133, https://doi.org/10.5194/bg-18-113-2021, https://doi.org/10.5194/bg-18-113-2021, 2021
Short summary
Short summary
Few studies have focused on the particle-attached (PA) and free-living (FL) microbes of the deep ocean. Here we determined PA and FL microbial communities along depth profiles of the SCS. PA and FL fractions accommodated divergent microbial compositions, and most of them are potentially generalists with PA and FL dual lifestyles. A potential vertical connectivity between surface-specific microbes and those in the deep ocean was indicated, likely through microbial attachment to sinking particles.
Saskia Brix, Karen J. Osborn, Stefanie Kaiser, Sarit B. Truskey, Sarah M. Schnurr, Nils Brenke, Marina Malyutina, and Pedro Martinez Arbizu
Biogeosciences, 17, 6163–6184, https://doi.org/10.5194/bg-17-6163-2020, https://doi.org/10.5194/bg-17-6163-2020, 2020
Short summary
Short summary
The Clarion–Clipperton Fracture Zone (CCZ) located in the Pacific is commercially the most important area of proposed manganese nodule mining. Extraction of this will influence the life and distribution of small deep-sea invertebrates like peracarid crustaceans, of which >90 % are undescribed species new to science. We are doing a species delimitation approach as baseline for an ecological interpretation of species distribution and discuss the results in light of future deep-sea conservation.
Amal Jayakumar and Bess B. Ward
Biogeosciences, 17, 5953–5966, https://doi.org/10.5194/bg-17-5953-2020, https://doi.org/10.5194/bg-17-5953-2020, 2020
Short summary
Short summary
Diversity and community composition of nitrogen-fixing microbes in the three main oxygen minimum zones of the world ocean were investigated using nifH clone libraries. Representatives of three main clusters of nifH genes were detected. Sequences were most diverse in the surface waters. The most abundant OTUs were affiliated with Alpha- and Gammaproteobacteria. The sequences were biogeographically distinct and the dominance of a few OTUs was commonly observed in OMZs in this (and other) studies.
Guillermo Feliú, Marc Pagano, Pamela Hidalgo, and François Carlotti
Biogeosciences, 17, 5417–5441, https://doi.org/10.5194/bg-17-5417-2020, https://doi.org/10.5194/bg-17-5417-2020, 2020
Short summary
Short summary
The impact of Saharan dust deposition events on the Mediterranean Sea ecosystem was studied during a basin-scale survey (PEACETIME cruise, May–June 2017). Short-term responses of the zooplankton community were observed after episodic dust deposition events, highlighting the impact of these events on productivity up to the zooplankton level in the poorly fertilized pelagic ecosystems of the southern Mediterranean Sea.
Douglas Lessa, Raphaël Morard, Lukas Jonkers, Igor M. Venancio, Runa Reuter, Adrian Baumeister, Ana Luiza Albuquerque, and Michal Kucera
Biogeosciences, 17, 4313–4342, https://doi.org/10.5194/bg-17-4313-2020, https://doi.org/10.5194/bg-17-4313-2020, 2020
Short summary
Short summary
We observed that living planktonic foraminifera had distinct vertically distributed communities across the Subtropical South Atlantic. In addition, a hierarchic alternation of environmental parameters was measured to control the distribution of planktonic foraminifer's species depending on the water depth. This implies that not only temperature but also productivity and subsurface processes are signed in fossil assemblages, which could be used to perform paleoceanographic reconstructions.
Cited articles
Alonso-Sáez, L., Galand, P. E., Casamayor, E. O., Pedros-Alio, C., and
Bertilsson, S.: High bicarbonate assimilation in the dark by Arctic
bacteria, ISME J., 4, 1581–1590, 2010.
Azam, F., Fenchel, T., J. G., Gray, J. S., Meyer-Reil, L. A., and
Thingstad, F.: The ecological role of water-column microbes in the
sea, Mar. Ecol.-Prog. Ser., 10, 257–263, 1983.
Baltar, F. and Herndl, G. J.: Ideas and perspectives: Is dark carbon fixation relevant for oceanic primary production estimates?, Biogeosciences, 16, 3793–3799, https://doi.org/10.5194/bg-16-3793-2019, 2019.
Baltar, F., Arístegui, J., Sintes, E., Gasol, J. M., Reinthaler, T.,
and Herndl, G. J.: Significance of non-sinking particulate organic carbon
and dark CO2 fixation to heterotrophic carbon demand in the mesopelagic
northeast Atlantic, Geophys. Res. Lett., 37, L09602, https://doi.org/10.1029/2010GL043105, 2010.
Baltar, F., Lundin, D., Palovaara, J., Lekunberri, I., Reinthaler, T.,
Herndl, G. J., and Pinhassi, J.: Prokaryotic responses to ammonium and
organic carbon reveal alternative CO2 fixation pathways and importance of
alkaline phosphatase in the mesopelagic North Atlantic, Front.
Microbiol., 7, 1670, https://doi.org/10.3389/fmicb.2016.01670, 2016.
Berden, G., Peeters, R., and Meijer, G.: Cavity ring-down spectroscopy:
Experimental schemes and applications, Int. Rev. Phys.
Chem., 19, 565–607, 2000.
Braun, A., Spona-Friedl, M., Avramov, M., Elsner, M., Baltar, F., Reinthaler, T., Herndl, G. J., and Griebler, C.: Reviews and syntheses: Heterotrophic fixation of inorganic carbon – significant but invisible flux in environmental carbon cycling, Biogeosciences, 18, 3689–3700, https://doi.org/10.5194/bg-18-3689-2021, 2021.
Boschker, H. T. S. and Middelburg, J. J.: Stable isotopes and biomarkers
in microbial ecology, FEMS Microbiol. Ecol., 40, 85–95, 2002.
Chaidez, V., Dreano, D., Agusti, S., Duarte, C. M., and Hoteit, I.: Decadal
trends in Red Sea maximum surface temperature, Sci. Rep., 7,
1–8, 2017.
Dickson, A. G., Sabine, C. L., and Christian, J. R.: Guide to best
practices for ocean CO2 measurements, North Pacific Marine Science
Organization, PICES Special Publication 3; IOCCP Report 8, 191, https://doi.org/10.25607/OBP-1342, 2007.
Dijkhuizen, L. and Harder, W.: Current views on the regulation of
autotrophic carbon dioxide fixation via the Calvin cycle in
bacteria, Antonie van Leeuwenhoek, 50, 473–487, 1984.
Ducklow, H. and Kirchman, D.: Bacterial production and biomass in the
oceans, Microbial Ecology of the Oceans, 1, 85–120, 2000.
Edwards, F. J.: Climate and oceanography, Red sea, 1, 45–68, 1987.
Erb, T. J.: Carboxylases in natural and synthetic microbial
pathways, Appl. Environ. Microb., 77, 8466–8477, 2011.
Field, C. B., Behrenfeld, M. J., Randerson, J. T., and Falkowski, P.: Primary production of the biosphere: integrating terrestrial and oceanic components, Science, 281, 237–240, 1998.
Gasol, J. M. and Morán, X. A. G.: Flow cytometric determination of
microbial abundances and its use to obtain indices of community structure
and relative activity, in: Hydrocarbon and Lipid Microbiology
Protocols, edited by: McGenity, T. J., Timmis, K. N., and Nogales, B., Springer, Berlin, Heidelberg, 159–187, 2016.
González, J. M., Fernández-Gómez, B., Fernàndez-Guerra, A.,
Gómez-Consarnau, L., Sánchez, O., Coll-Lladó, M., Del Campo, J.,
Escudero, L., Rodríguez-Martínez, R., Alonso-Sáez, L., and
Latasa, M.: Genome analysis of the proteorhodopsin-containing marine
bacterium Polaribacter sp. MED152 (Flavobacteria), P.
Natl. Acad. Sci. USA, 105, 8724–8729, 2008.
Grasshoff, K.: Zur Chemie des Roten Meeres und des Inneren Golfs von Aden : nach beobachtungen von F. S. “Meteor” während der Indischen Ozean Expedition 1964/65, Meteor Forschungsergebnisse: Reihe A, Allgemeines, Physik und Chemie des Meeres, 6, 1–76, 1969.
Hansen, H. P. and Koroleff, F.: Determination of Nutrients, Methods of
Seawater Analysis, edited by: Grasshoff, K., Kremling, K., and Ehrhardt, M., 159–228, https://doi.org/10.1002/9783527613984.ch10, 1999.
Ionescu, D., Penno, S., Haimovich, M., Rihtman, B., Goodwin, A., Schwartz,
D., Hazanov, L., Chernihovsky, M., Post, A. F., and Oren, A.: Archaea in the
Gulf of Aqaba, FEMS Nicrobiol. Ecol., 69, 425–438, 2009.
Kirchman, D. L.: Uptake and regeneration of inorganic nutrients by marine
heterotrophic bacteria, Microbial Ecology of the Oceans, 28, 255–271, 2000.
Koshikawa, H., Harada, S., Watanabe, M., Kogure, K., Ioriya, T., Kohata, K., Kimura, T., Sato, K., and Akehata, T.: Influence of plankton community structure on the
contribution of bacterial production to metazooplankton in a coastal
mesocosm, Mar. Ecol.-Prog. Ser., 186, 31–42, https://doi.org/10.3354/meps186031, 1999.
Li, W. K. W. and Dickie, P. M.: Light and dark 14C uptake in dimly-lit
oligotrophic waters: relation to bacterial activity, J Plankton
Res., 13, 29–44, 1991.
Li, W. K. W., Irwin, B. D., and Dickie, P. M.: Dark fixation of 14C:
variations related to biomass and productivity of phytoplankton and
bacteria, Limnol. Oceanogr., 38, 483–494, 1993.
Llirós, M., Alonso-Sáez, L., Gich, F., Plasencia, A., Auguet, O.,
Casamayor, E. O., and Borrego, C. M.: Active bacteria and archaea cells
fixing bicarbonate in the dark along the water column of a stratified
eutrophic lagoon, FEMS Microbiol. Ecol., 77, 370–384, 2011.
López-Sandoval, D. C., Delgado-Huertas, A., and Agustí, S.: The 13C method as a robust alternative to 14C-based measurements of primary productivity in the Mediterranean Sea, J. Plankton Res., 40, 544–554, 2018.
López-Sandoval, D. C., Delgado-Huertas, A., Carrillo-de-Albornoz, P.,
Duarte, C. M., and Agustí, S.: Use of cavity ring-down spectrometry to
quantify 13C-primary productivity in oligotrophic waters, Limnol.
Oceanogr.-Meth., 17, 137–144, 2019.
López-Sandoval, D. C., Duarte, C. M., and Agustí, S.: Nutrient and
temperature constraints on primary production and net phytoplankton growth
in a tropical ecosystem, Limnol. Oceanogr., 66, 2923–2935, 2021.
Markager, S.: Dark uptake of inorganic 14C in oligotrophic oceanic
waters, J. Plankton Res., 20, 1813–1836, 1998.
Middelburg, J. J., Barranguet, C., Boschker, H. T., Herman, P. M., Moens,
T., and Heip, C. H.: The fate of intertidal microphytobenthos carbon: An in
situ 13C-labeling study, Limnol. Oceanogr., 45, 1224–1234, 2000
Nielsen, E. S.: Dark fixation of CO2 and measurements of organic
productivity. With remarks on chemo-synthesis, Physiol. Plantarum, 13,
348–357, 1960.
Palovaara, J., Akram, N., Baltar, F., Bunse, C., Forsberg, J., Pedrós-Alió, C., González, J. M., and Pinhassi, J.: Stimulation of growth by
proteorhodopsin phototrophy involves regulation of central metabolic
pathways in marine planktonic bacteria, P. Natl. Acad.
Sci. USA, 111, E3650–E3658, 2014.
Prabowo, D. A. and Agusti, S.: Free-living dinoflagellates of the central Red
Sea, Saudi Arabia: Variability, new records and potentially harmful
species, Mar. Pollut. Bull., 141, 629–648, 2019.
Prakash, A., Sheldon, R. W., and Sutcliffe Jr., W. H.: Geographic variation
of oceanic 14C dark uptake, Limnol. Oceanogr., 36, 30–39, 1991.
Reinthaler, T., van Aken, H. M., and Herndl, G. J.: Major contribution of
autotrophy to microbial carbon cycling in the deep North Atlantic's
interior, Deep-Sea Res. Pt. II, 57, 1572–1580, 2010.
Roslev, P., Larsen, M. B., Jørgensen, D., and Hesselsoe, M.: Use of
heterotrophic CO2 assimilation as a measure of metabolic activity in
planktonic and sessile bacteria, J. Microbiol. Meth., 59,
381–393, 2004.
Shaltout, M.: Recent Sea surface temperature trends and future scenarios for
the Red Sea, Oceanologia, 61, 484–504, 2019.
Signori, C. N., Valentin, J. L., Pollery, R. C., and Enrich-Prast, A.:
Temporal variability of dark carbon fixation and bacterial production and
their relation with environmental factors in a tropical estuarine
system, Estuar. Coast., 41, 1089–1101, 2018.
Steemann-Nielsen, E.: On the determination of the activity for measuring
primary production, J. Cons. Int. Explor. Mer., 18, 117–140, 1952.
Wafar, M., Qurban, M. A., Ashraf, M., Manikandan, K. P., Flandez, A. V.,
and Balala, A. C.: Patterns of distribution of inorganic nutrients in Red
Sea and their implications to primary production, J. Marine
Syst., 156, 86–98, 2016.
Wood, H. G. and Werkman, C. H.: The utilisation of CO2 in the
dissimilation of glycerol by the propionic acid bacteria, Biochem.
J., 30, 48–53, https://doi.org/10.1042/bj0300048, 1936.
Yakimov, M. M., La Cono, V., Smedile, F., Crisafi, F., Arcadi, E., Leonardi,
M., Decembrini, F., Catalfamo, M., Bargiela, R., Ferrer, M., and Golyshin,
P. N.: Heterotrophic bicarbonate assimilation is the main process of de novo
organic carbon synthesis in hadal zone of the Hellenic Trench, the deepest
part of Mediterranean Sea, Env. Microbiol. Rep., 6,
709–722, 2014.
Yao, F. and Hoteit, I.: Rapid red sea deep water renewals caused by
volcanic eruptions and the North Atlantic oscillation, Sci.
Adv., 4, eaar5637, https://doi.org/10.1126/sciadv.aar5637, 2018.
Zhou, W., Liao, J., Guo, Y., Yuan, X., Huang, H., Yuan, T., and Liu, S.:
High dark carbon fixation in the tropical South China Sea, Cont. Shelf
Res., 146, 82–88, 2017.
Short summary
This study investigates bacterial dissolved inorganic carbon (DIC) fixation in the Red Sea, an oligotrophic ecosystem, using stable-isotope labeling and spectroscopy. The research reveals that bacterial DIC fixation significantly contributes to total DIC fixation, in the surface and deep water. The study demonstrates that as primary production decreases, the role of bacterial DIC fixation increases, emphasizing its importance with photosynthesis in estimating oceanic carbon dioxide production.
This study investigates bacterial dissolved inorganic carbon (DIC) fixation in the Red Sea, an...
Altmetrics
Final-revised paper
Preprint