Articles | Volume 16, issue 7
https://doi.org/10.5194/bg-16-1433-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-16-1433-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
08 Apr 2019
Research article |
| 08 Apr 2019
| 08 Apr 2019
Iron minerals inhibit the growth of Pseudomonas brassicacearum J12 via a free-radical mechanism: implications for soil carbon storage
Hai-Yan Du
Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, College of
Resources & Environmental Sciences, Nanjing Agricultural University,
Nanjing 210095, China
Guang-Hui Yu
CORRESPONDING AUTHOR
Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, College of
Resources & Environmental Sciences, Nanjing Agricultural University,
Nanjing 210095, China
Institute of Surface-Earth System Science, Tianjin University, Tianjin
300072, China
Fu-Sheng Sun
Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, College of
Resources & Environmental Sciences, Nanjing Agricultural University,
Nanjing 210095, China
Institute of Surface-Earth System Science, Tianjin University, Tianjin
300072, China
Muhammad Usman
Environmental Mineralogy, Center for Applied Geosciences, University of
Tübingen, 72074 Tübingen, Germany
Institute of Soil and Environmental Sciences, University of Agriculture,
Faisalabad 38040, Pakistan
Bernard A. Goodman
College of Physical Science and Technology, Guangxi University, Nanning
530004, Guangxi, China
Wei Ran
Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, College of
Resources & Environmental Sciences, Nanjing Agricultural University,
Nanjing 210095, China
Qi-Rong Shen
Jiangsu Provincial Key Lab for Organic Solid Waste Utilization, College of
Resources & Environmental Sciences, Nanjing Agricultural University,
Nanjing 210095, China
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Beibei Wang, Mingze Sun, Jinming Yang, Zongzhuan Shen, Yannan Ou, Lin Fu, Yan Zhao, Rong Li, Yunze Ruan, and Qirong Shen
SOIL, 8, 17–29, https://doi.org/10.5194/soil-8-17-2022, https://doi.org/10.5194/soil-8-17-2022, 2022
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Pineapple–banana rotation combined with bio-organic fertilizer application is effective in Fusarium wilt suppression. Bacterial and fungal communities are changed. Large changes in the fungal community and special Burkholderia functions in the network are likely the most responsible factors for soil-borne disease suppression. Pineapple–banana rotation combined with bio-organic fertilizer application has strong potential for the sustainable management of banana Fusarium wilt disease.
Jian Xiao, Xinhua He, Jialong Hao, Ying Zhou, Lirong Zheng, Wei Ran, Qirong Shen, and Guanghui Yu
Biogeosciences, 13, 3607–3618, https://doi.org/10.5194/bg-13-3607-2016, https://doi.org/10.5194/bg-13-3607-2016, 2016
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Reactive minerals are ubiquitous in soil and are proposed as a primary driver for carbon (C) retention. However, regulation of soil reactive minerals and direct evidence in sequestrating C by them are scarce. Here we show that, compared with chemical fertilization, inorganic and organic fertilization enhanced the C-binding loadings of Al and Fe minerals in soil colloids, suggesting that reactive mineral species and their associations with C are differentially affected by fertilization practices.
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Biogeochemistry: Soils
Vegetation patterns associated with nutrient availability and supply in high-elevation tropical Andean ecosystems
Technical note: An open-source, low-cost system for continuous monitoring of low nitrate concentrations in soil and open water
Long-term fertilization increases soil but not plant or microbial N in a Chihuahuan Desert grassland
Factors controlling spatiotemporal variability of soil carbon accumulation and stock estimates in a tidal salt marsh
Moisture and temperature effects on the radiocarbon signature of respired carbon dioxide to assess stability of soil carbon in the Tibetan Plateau
Technical Note: A validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis
Non-mycorrhizal root-associated fungi increase soil C stocks and stability via diverse mechanisms
Nine years of warming and nitrogen addition in the Tibetan grassland promoted loss of soil organic carbon but did not alter the bulk change in chemical structure
Diverse organic carbon dynamics captured by radiocarbon analysis of distinct compound classes in a grassland soil
Soil priming effects and involved microbial community along salt gradients
Adjustments to the Rock-Eval® thermal analysis for soil organic and inorganic carbon quantification
Ecosystem-specific patterns and drivers of global reactive iron mineral-associated organic carbon
Dark septate endophytic fungi associated with pioneer grass inhabiting volcanic deposits and their functions in promoting plant growth
Global patterns and drivers of phosphorus fractions in natural soils
Reviews and syntheses: Iron – a driver of nitrogen bioavailability in soils?
The Effects of Land Use on Soil Carbon Stocks in the UK
How well does ramped thermal oxidation quantify the age distribution of soil carbon? Assessing thermal stability of physically and chemically fractionated soil organic matter
Differential temperature sensitivity of intracellular metabolic processes and extracellular soil enzyme activities
Mapping soil organic carbon fractions for Australia, their stocks, and uncertainty
Technical note: The recovery rate of free particulate organic matter from soil samples is strongly affected by the method of density fractionation
Deforestation for agriculture leads to soil warming and enhanced litter decomposition in subarctic soils
Temperature sensitivity of soil organic carbon respiration along a forested elevation gradient in the Rwenzori Mountains, Uganda
The influence of elevated CO2 and soil depth on rhizosphere activity and nutrient availability in a mature Eucalyptus woodland
The paradox of assessing greenhouse gases from soils for nature-based solutions
Management-induced changes in soil organic carbon on global croplands
Pore network modeling as a new tool for determining gas diffusivity in peat
Temperature sensitivity of dark CO2 fixation in temperate forest soils
Effects of precipitation seasonality, irrigation, vegetation cycle and soil type on enhanced weathering – modeling of cropland case studies across four sites
Stable isotope profiles of soil organic carbon in forested and grassland landscapes in the Lake Alaotra basin (Madagascar): insights in past vegetation changes
Reviews and syntheses: The promise of big diverse soil data, moving current practices towards future potential
Dynamics of rare earth elements and associated major and trace elements during Douglas-fir (Pseudotsuga menziesii) and European beech (Fagus sylvatica L.) litter degradation
To what extent can soil moisture and soil Cu contamination stresses affect nitrous species emissions? Estimation through calibration of a nitrification–denitrification model
Carbon, nitrogen, and phosphorus stoichiometry of organic matter in Swedish forest soils and its relationship with climate, tree species, and soil texture
Soil geochemistry as a driver of soil organic matter composition: insights from a soil chronosequence
Leaching of inorganic and organic phosphorus and nitrogen in contrasting beech forest soils – seasonal patterns and effects of fertilization
Age and chemistry of dissolved organic carbon reveal enhanced leaching of ancient labile carbon at the permafrost thaw zone
Soil organic carbon stabilization mechanisms and temperature sensitivity in old terraced soils
Effect of organic carbon addition on paddy soil organic carbon decomposition under different irrigation regimes
Soil profile connectivity can impact microbial substrate use, affecting how soil CO2 effluxes are controlled by temperature
Additional carbon inputs to reach a 4 per 1000 objective in Europe: feasibility and projected impacts of climate change based on Century simulations of long-term arable experiments
Cycling and retention of nitrogen in European beech (Fagus sylvatica L.) ecosystems under elevated fructification frequency
Mercury mobility, colloid formation and methylation in a polluted Fluvisol as affected by manure application and flooding–draining cycle
Simulating measurable ecosystem carbon and nitrogen dynamics with the mechanistically defined MEMS 2.0 model
Similar importance of edaphic and climatic factors for controlling soil organic carbon stocks of the world
Representing methane emissions from wet tropical forest soils using microbial functional groups constrained by soil diffusivity
Long-term bare-fallow soil fractions reveal thermo-chemical properties controlling soil organic carbon dynamics
Geochemical zones and environmental gradients for soils from the central Transantarctic Mountains, Antarctica
Age distribution, extractability, and stability of mineral-bound organic carbon in central European soils
Denitrification in soil as a function of oxygen availability at the microscale
Key drivers of pyrogenic carbon redistribution during a simulated rainfall event
Armando Molina, Veerle Vanacker, Oliver Chadwick, Santiago Zhiminaicela, Marife Corre, and Edzo Veldkamp
Biogeosciences, 21, 3075–3091, https://doi.org/10.5194/bg-21-3075-2024, https://doi.org/10.5194/bg-21-3075-2024, 2024
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The tropical Andes contains unique landscapes where forest patches are surrounded by tussock grasses and cushion-forming plants. The aboveground vegetation composition informs us about belowground nutrient availability: patterns in plant-available nutrients resulted from strong biocycling of cations and removal of soil nutrients by plant uptake or leaching. Future changes in vegetation distribution will affect soil water and solute fluxes and the aquatic ecology of Andean rivers and lakes.
Sahiti Bulusu, Cristina Prieto García, Helen E. Dahlke, and Elad Levintal
Biogeosciences, 21, 3007–3013, https://doi.org/10.5194/bg-21-3007-2024, https://doi.org/10.5194/bg-21-3007-2024, 2024
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Do-it-yourself hardware is a new way to improve measurement resolution. We present a low-cost, automated system for field measurements of low nitrate concentrations in soil porewater and open water bodies. All data hardware components cost USD 1100, which is much cheaper than other available commercial solutions. We provide the complete building guide to reduce technical barriers, which we hope will allow easier reproducibility and set up new soil and environmental monitoring applications.
Violeta Mendoza-Martinez, Scott L. Collins, and Jennie R. McLaren
Biogeosciences, 21, 2655–2667, https://doi.org/10.5194/bg-21-2655-2024, https://doi.org/10.5194/bg-21-2655-2024, 2024
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We examine the impacts of multi-decadal nitrogen additions on a dryland ecosystem N budget, including the soil, microbial, and plant N pools. After 26 years, there appears to be little impact on the soil microbial or plant community and only minimal increases in N pools within the soil. While perhaps encouraging from a conservation standpoint, we calculate that greater than 95 % of the nitrogen added to the system is not retained and is instead either lost deeper in the soil or emitted as gas.
Sean Fettrow, Andrew Wozniak, Holly A. Michael, and Angelia L. Seyfferth
Biogeosciences, 21, 2367–2384, https://doi.org/10.5194/bg-21-2367-2024, https://doi.org/10.5194/bg-21-2367-2024, 2024
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Salt marshes play a big role in global carbon (C) storage, and C stock estimates are used to predict future changes. However, spatial and temporal gradients in C burial rates over the landscape exist due to variations in water inundation, dominant plant species and stage of growth, and tidal action. We quantified soil C concentrations in soil cores across time and space beside several porewater biogeochemical variables and discussed the controls on variability in soil C in salt marsh ecosystems.
Andrés Tangarife-Escobar, Georg Guggenberger, Xiaojuan Feng, Guohua Dai, Carolina Urbina-Malo, Mina Azizi-Rad, and Carlos A. Sierra
Biogeosciences, 21, 1277–1299, https://doi.org/10.5194/bg-21-1277-2024, https://doi.org/10.5194/bg-21-1277-2024, 2024
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Soil organic matter stability depends on future temperature and precipitation scenarios. We used radiocarbon (14C) data and model predictions to understand how the transit time of carbon varies under environmental change in grasslands and peatlands. Soil moisture affected the Δ14C of peatlands, while temperature did not have any influence. Our models show the correspondence between Δ14C and transit time and could allow understanding future interactions between terrestrial and atmospheric carbon
Marija Stojanova, Pierre Arbelet, François Baudin, Nicolas Bouton, Giovanni Caria, Lorenza Pacini, Nicolas Proix, Edouard Quibel, Achille Thin, and Pierre Barré
EGUsphere, https://doi.org/10.5194/egusphere-2024-578, https://doi.org/10.5194/egusphere-2024-578, 2024
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Because of its importance for climate regulation and soil health, many studies are focusing on carbon dynamics in soils. However, quantifying organic and inorganic carbon remains an issue in carbonated soils. In this technical note, we propose a validated correction method to quantify organic and inorganic carbon in soils using Rock-Eval® thermal analysis. With this correction, Rock-Eval® method has the potential to become the standard method for quantifying carbon in carbonate soils.
Emiko K. Stuart, Laura Castañeda-Gómez, Wolfram Buss, Jeff R. Powell, and Yolima Carrillo
Biogeosciences, 21, 1037–1059, https://doi.org/10.5194/bg-21-1037-2024, https://doi.org/10.5194/bg-21-1037-2024, 2024
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We inoculated wheat plants with various types of fungi whose impacts on soil carbon are poorly understood. After several months of growth, we examined both their impacts on soil carbon and the underlying mechanisms using multiple methods. Overall the fungi benefitted the storage of carbon in soil, mainly by improving the stability of pre-existing carbon, but several pathways were involved. This study demonstrates their importance for soil carbon storage and, therefore, climate change mitigation.
Huimin Sun, Michael W. I. Schmidt, Jintao Li, Jinquan Li, Xiang Liu, Nicholas O. E. Ofiti, Shurong Zhou, and Ming Nie
Biogeosciences, 21, 575–589, https://doi.org/10.5194/bg-21-575-2024, https://doi.org/10.5194/bg-21-575-2024, 2024
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A soil organic carbon (SOC) molecular structure suggested that the easily decomposable and stabilized SOC is similarly affected after 9-year warming and N treatments despite large changes in SOC stocks. Given the long residence time of some SOC, the similar loss of all measurable chemical forms of SOC under global change treatments could have important climate consequences.
Katherine E. Grant, Marisa N. Repasch, Kari M. Finstad, Julia D. Kerr, Maxwell A. T. Marple, Christopher J. Larson, Taylor A. B. Broek, Jennifer Pett-Ridge, and Karis J. McFarlane
EGUsphere, https://doi.org/10.5194/egusphere-2023-3125, https://doi.org/10.5194/egusphere-2023-3125, 2024
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Soils store organic carbon composed of different compounds from plants and microbes that stays in the soils for different lengths of time. To understand this process, we measure the time each carbon fraction is in a grassland soil profile. Our results show that the length of time each individual soil fraction is in our soil changes. Our approach allows a detailed look at the different components in soils. This study can help improve our understanding of soil dynamics.
Haoli Zhang, Doudou Chang, Zhifeng Zhu, Chunmei Meng, and Kaiyong Wang
Biogeosciences, 21, 1–11, https://doi.org/10.5194/bg-21-1-2024, https://doi.org/10.5194/bg-21-1-2024, 2024
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Soil salinity mediates microorganisms and soil processes like soil organic carbon (SOC) cycling. We observed that negative priming effects at the early stages might be due to the preferential utilization of cottonseed meal. The positive priming that followed decreased with the increase in salinity.
Joséphine Hazera, David Sebag, Isabelle Kowalewski, Eric Verrecchia, Herman Ravelojaona, and Tiphaine Chevallier
Biogeosciences, 20, 5229–5242, https://doi.org/10.5194/bg-20-5229-2023, https://doi.org/10.5194/bg-20-5229-2023, 2023
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This study adapts the Rock-Eval® protocol to quantify soil organic carbon (SOC) and soil inorganic carbon (SIC) on a non-pretreated soil aliquot. The standard protocol properly estimates SOC contents once the TOC parameter is corrected. However, it cannot complete the thermal breakdown of SIC amounts > 4 mg, leading to an underestimation of high SIC contents by the MinC parameter, even after correcting for this. Thus, the final oxidation isotherm is extended to 7 min to quantify any SIC amount.
Bo Zhao, Amin Dou, Zhiwei Zhang, Zhenyu Chen, Wenbo Sun, Yanli Feng, Xiaojuan Wang, and Qiang Wang
Biogeosciences, 20, 4761–4774, https://doi.org/10.5194/bg-20-4761-2023, https://doi.org/10.5194/bg-20-4761-2023, 2023
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This study provided a comprehensive analysis of the spatial variability and determinants of Fe-bound organic carbon (Fe-OC) among terrestrial, wetland, and marine ecosystems and its governing factors globally. We illustrated that reactive Fe was not only an important sequestration mechanism for OC in terrestrial ecosystems but also an effective “rusty sink” of OC preservation in wetland and marine ecosystems, i.e., a key factor for long-term OC storage in global ecosystems.
Han Sun, Tomoyasu Nishizawa, Hiroyuki Ohta, and Kazuhiko Narisawa
Biogeosciences, 20, 4737–4749, https://doi.org/10.5194/bg-20-4737-2023, https://doi.org/10.5194/bg-20-4737-2023, 2023
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In this research, we assessed the diversity and function of the dark septate endophytic (DSE) fungi community associated with Miscanthus condensatus root in volcanic ecosystems. Both metabarcoding and isolation were adopted in this study. We further validated effects on plant growth by inoculation of some core DSE isolates. This study helps improve our understanding of the role of Miscanthus condensatus-associated DSE fungi during the restoration of post-volcanic ecosystems.
Xianjin He, Laurent Augusto, Daniel S. Goll, Bruno Ringeval, Ying-Ping Wang, Julian Helfenstein, Yuanyuan Huang, and Enqing Hou
Biogeosciences, 20, 4147–4163, https://doi.org/10.5194/bg-20-4147-2023, https://doi.org/10.5194/bg-20-4147-2023, 2023
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We identified total soil P concentration as the most important predictor of all soil P pool concentrations, except for primary mineral P concentration, which is primarily controlled by soil pH and only secondarily by total soil P concentration. We predicted soil P pools’ distributions in natural systems, which can inform assessments of the role of natural P availability for ecosystem productivity, climate change mitigation, and the functioning of the Earth system.
Imane Slimani, Xia Zhu-Barker, Patricia Lazicki, and William Horwath
Biogeosciences, 20, 3873–3894, https://doi.org/10.5194/bg-20-3873-2023, https://doi.org/10.5194/bg-20-3873-2023, 2023
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There is a strong link between nitrogen availability and iron minerals in soils. These minerals have multiple outcomes for nitrogen availability depending on soil conditions and properties. For example, iron can limit microbial degradation of nitrogen in aerated soils but has opposing outcomes in non-aerated soils. This paper focuses on the multiple ways iron can affect nitrogen bioavailability in soils.
Peter Levy, Laura Bentley, Bridget Emmett, Angus Garbutt, Aidan Keith, Inma Lebron, and David Robinson
EGUsphere, https://doi.org/10.5194/egusphere-2023-1681, https://doi.org/10.5194/egusphere-2023-1681, 2023
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We collated a large data set (15790 soil cores) on soil carbon stock in different land uses. Soil carbon stocks were highest in woodlands and lowest in croplands. The variability in the effects were large. This has important implications for agri-environment schemes, seeking to sequester carbon in the soil by altering land use, because the effect of a given intervention is very hard to verify.
Shane W. Stoner, Marion Schrumpf, Alison Hoyt, Carlos A. Sierra, Sebastian Doetterl, Valier Galy, and Susan Trumbore
Biogeosciences, 20, 3151–3163, https://doi.org/10.5194/bg-20-3151-2023, https://doi.org/10.5194/bg-20-3151-2023, 2023
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Soils store more carbon (C) than any other terrestrial C reservoir, but the processes that control how much C stays in soil, and for how long, are very complex. Here, we used a recent method that involves heating soil in the lab to measure the range of C ages in soil. We found that most C in soil is decades to centuries old, while some stays for much shorter times (days to months), and some is thousands of years old. Such detail helps us to estimate how soil C may react to changing climate.
Adetunji Alex Adekanmbi, Laurence Dale, Liz Shaw, and Tom Sizmur
Biogeosciences, 20, 2207–2219, https://doi.org/10.5194/bg-20-2207-2023, https://doi.org/10.5194/bg-20-2207-2023, 2023
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The decomposition of soil organic matter and flux of carbon dioxide are expected to increase as temperatures rise. However, soil organic matter decomposition is a two-step process whereby large molecules are first broken down outside microbial cells and then respired within microbial cells. We show here that these two steps are not equally sensitive to increases in soil temperature and that global warming may cause a shift in the rate-limiting step from outside to inside the microbial cell.
Mercedes Román Dobarco, Alexandre M. J-C. Wadoux, Brendan Malone, Budiman Minasny, Alex B. McBratney, and Ross Searle
Biogeosciences, 20, 1559–1586, https://doi.org/10.5194/bg-20-1559-2023, https://doi.org/10.5194/bg-20-1559-2023, 2023
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Soil organic carbon (SOC) is of a heterogeneous nature and varies in chemistry, stabilisation mechanisms, and persistence in soil. In this study we mapped the stocks of SOC fractions with different characteristics and turnover rates (presumably PyOC >= MAOC > POC) across Australia, combining spectroscopy and digital soil mapping. The SOC stocks (0–30 cm) were estimated as 13 Pg MAOC, 2 Pg POC, and 5 Pg PyOC.
Frederick Büks
Biogeosciences, 20, 1529–1535, https://doi.org/10.5194/bg-20-1529-2023, https://doi.org/10.5194/bg-20-1529-2023, 2023
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Ultrasonication with density fractionation of soils is a commonly used method to separate soil organic matter pools, which is, e.g., important to calculate carbon turnover in landscapes. It is shown that the approach that merges soil and dense solution without mixing has a low recovery rate and causes co-extraction of parts of the retained labile pool along with the intermediate pool. An alternative method with high recovery rates and no cross-contamination was recommended.
Tino Peplau, Christopher Poeplau, Edward Gregorich, and Julia Schroeder
Biogeosciences, 20, 1063–1074, https://doi.org/10.5194/bg-20-1063-2023, https://doi.org/10.5194/bg-20-1063-2023, 2023
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We buried tea bags and temperature loggers in a paired-plot design in soils under forest and agricultural land and retrieved them after 2 years to quantify the effect of land-use change on soil temperature and litter decomposition in subarctic agricultural systems. We could show that agricultural soils were on average 2 °C warmer than forests and that litter decomposition was enhanced. The results imply that deforestation amplifies effects of climate change on soil organic matter dynamics.
Joseph Okello, Marijn Bauters, Hans Verbeeck, Samuel Bodé, John Kasenene, Astrid Françoys, Till Engelhardt, Klaus Butterbach-Bahl, Ralf Kiese, and Pascal Boeckx
Biogeosciences, 20, 719–735, https://doi.org/10.5194/bg-20-719-2023, https://doi.org/10.5194/bg-20-719-2023, 2023
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The increase in global and regional temperatures has the potential to drive accelerated soil organic carbon losses in tropical forests. We simulated climate warming by translocating intact soil cores from higher to lower elevations. The results revealed increasing temperature sensitivity and decreasing losses of soil organic carbon with increasing elevation. Our results suggest that climate warming may trigger enhanced losses of soil organic carbon from tropical montane forests.
Johanna Pihlblad, Louise C. Andresen, Catriona A. Macdonald, David S. Ellsworth, and Yolima Carrillo
Biogeosciences, 20, 505–521, https://doi.org/10.5194/bg-20-505-2023, https://doi.org/10.5194/bg-20-505-2023, 2023
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Elevated CO2 in the atmosphere increases forest biomass productivity when growth is not limited by soil nutrients. This study explores how mature trees stimulate soil availability of nitrogen and phosphorus with free-air carbon dioxide enrichment after 5 years of fumigation. We found that both nutrient availability and processes feeding available pools increased in the rhizosphere, and phosphorus increased at depth. This appears to not be by decomposition but by faster recycling of nutrients.
Rodrigo Vargas and Van Huong Le
Biogeosciences, 20, 15–26, https://doi.org/10.5194/bg-20-15-2023, https://doi.org/10.5194/bg-20-15-2023, 2023
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Quantifying the role of soils in nature-based solutions requires accurate estimates of soil greenhouse gas (GHG) fluxes. We suggest that multiple GHG fluxes should not be simultaneously measured at a few fixed time intervals, but an optimized sampling approach can reduce bias and uncertainty. Our results have implications for assessing GHG fluxes from soils and a better understanding of the role of soils in nature-based solutions.
Kristine Karstens, Benjamin Leon Bodirsky, Jan Philipp Dietrich, Marta Dondini, Jens Heinke, Matthias Kuhnert, Christoph Müller, Susanne Rolinski, Pete Smith, Isabelle Weindl, Hermann Lotze-Campen, and Alexander Popp
Biogeosciences, 19, 5125–5149, https://doi.org/10.5194/bg-19-5125-2022, https://doi.org/10.5194/bg-19-5125-2022, 2022
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Soil organic carbon (SOC) has been depleted by anthropogenic land cover change and agricultural management. While SOC models often simulate detailed biochemical processes, the management decisions are still little investigated at the global scale. We estimate that soils have lost around 26 GtC relative to a counterfactual natural state in 1975. Yet, since 1975, SOC has been increasing again by 4 GtC due to a higher productivity, recycling of crop residues and manure, and no-tillage practices.
Petri Kiuru, Marjo Palviainen, Arianna Marchionne, Tiia Grönholm, Maarit Raivonen, Lukas Kohl, and Annamari Laurén
Biogeosciences, 19, 5041–5058, https://doi.org/10.5194/bg-19-5041-2022, https://doi.org/10.5194/bg-19-5041-2022, 2022
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Peatlands are large carbon stocks. Emissions of carbon dioxide and methane from peatlands may increase due to changes in management and climate. We studied the variation in the gas diffusivity of peat with depth using pore network simulations and laboratory experiments. Gas diffusivity was found to be lower in deeper peat with smaller pores and lower pore connectivity. However, gas diffusivity was not extremely low in wet conditions, which may reflect the distinctive structure of peat.
Rachael Akinyede, Martin Taubert, Marion Schrumpf, Susan Trumbore, and Kirsten Küsel
Biogeosciences, 19, 4011–4028, https://doi.org/10.5194/bg-19-4011-2022, https://doi.org/10.5194/bg-19-4011-2022, 2022
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Soils will likely become warmer in the future, and this can increase the release of carbon dioxide (CO2) into the atmosphere. As microbes can take up soil CO2 and prevent further escape into the atmosphere, this study compares the rate of uptake and release of CO2 at two different temperatures. With warming, the rate of CO2 uptake increases less than the rate of release, indicating that the capacity to modulate soil CO2 release into the atmosphere will decrease under future warming.
Giuseppe Cipolla, Salvatore Calabrese, Amilcare Porporato, and Leonardo V. Noto
Biogeosciences, 19, 3877–3896, https://doi.org/10.5194/bg-19-3877-2022, https://doi.org/10.5194/bg-19-3877-2022, 2022
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Enhanced weathering (EW) is a promising strategy for carbon sequestration. Since models may help to characterize field EW, the present work applies a hydro-biogeochemical model to four case studies characterized by different rainfall seasonality, vegetation and soil type. Rainfall seasonality strongly affects EW dynamics, but low carbon sequestration suggests that an in-depth analysis at the global scale is required to see if EW may be effective to mitigate climate change.
Vao Fenotiana Razanamahandry, Marjolein Dewaele, Gerard Govers, Liesa Brosens, Benjamin Campforts, Liesbet Jacobs, Tantely Razafimbelo, Tovonarivo Rafolisy, and Steven Bouillon
Biogeosciences, 19, 3825–3841, https://doi.org/10.5194/bg-19-3825-2022, https://doi.org/10.5194/bg-19-3825-2022, 2022
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In order to shed light on possible past vegetation shifts in the Central Highlands of Madagascar, we measured stable isotope ratios of organic carbon in soil profiles along both forested and grassland hillslope transects in the Lake Alaotra region. Our results show that the landscape of this region was more forested in the past: soils in the C4-dominated grasslands contained a substantial fraction of C3-derived carbon, increasing with depth.
Katherine E. O. Todd-Brown, Rose Z. Abramoff, Jeffrey Beem-Miller, Hava K. Blair, Stevan Earl, Kristen J. Frederick, Daniel R. Fuka, Mario Guevara Santamaria, Jennifer W. Harden, Katherine Heckman, Lillian J. Heran, James R. Holmquist, Alison M. Hoyt, David H. Klinges, David S. LeBauer, Avni Malhotra, Shelby C. McClelland, Lucas E. Nave, Katherine S. Rocci, Sean M. Schaeffer, Shane Stoner, Natasja van Gestel, Sophie F. von Fromm, and Marisa L. Younger
Biogeosciences, 19, 3505–3522, https://doi.org/10.5194/bg-19-3505-2022, https://doi.org/10.5194/bg-19-3505-2022, 2022
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Research data are becoming increasingly available online with tantalizing possibilities for reanalysis. However harmonizing data from different sources remains challenging. Using the soils community as an example, we walked through the various strategies that researchers currently use to integrate datasets for reanalysis. We find that manual data transcription is still extremely common and that there is a critical need for community-supported informatics tools like vocabularies and ontologies.
Alessandro Montemagno, Christophe Hissler, Victor Bense, Adriaan J. Teuling, Johanna Ziebel, and Laurent Pfister
Biogeosciences, 19, 3111–3129, https://doi.org/10.5194/bg-19-3111-2022, https://doi.org/10.5194/bg-19-3111-2022, 2022
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We investigated the biogeochemical processes that dominate the release and retention of elements (nutrients and potentially toxic elements) during litter degradation. Our results show that toxic elements are retained in the litter, while nutrients are released in solution during the first stages of degradation. This seems linked to the capability of trees to distribute the elements between degradation-resistant and non-degradation-resistant compounds of leaves according to their chemical nature.
Laura Sereni, Bertrand Guenet, Charlotte Blasi, Olivier Crouzet, Jean-Christophe Lata, and Isabelle Lamy
Biogeosciences, 19, 2953–2968, https://doi.org/10.5194/bg-19-2953-2022, https://doi.org/10.5194/bg-19-2953-2022, 2022
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This study focused on the modellisation of two important drivers of soil greenhouse gas emissions: soil contamination and soil moisture change. The aim was to include a Cu function in the soil biogeochemical model DNDC for different soil moisture conditions and then to estimate variation in N2O, NO2 or NOx emissions. Our results show a larger effect of Cu on N2 and N2O emissions than on the other nitrogen species and a higher effect for the soils incubated under constant constant moisture.
Marie Spohn and Johan Stendahl
Biogeosciences, 19, 2171–2186, https://doi.org/10.5194/bg-19-2171-2022, https://doi.org/10.5194/bg-19-2171-2022, 2022
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We explored the ratios of carbon (C), nitrogen (N), and phosphorus (P) of organic matter in Swedish forest soils. The N : P ratio of the organic layer was most strongly related to the mean annual temperature, while the C : N ratios of the organic layer and mineral soil were strongly related to tree species even in the subsoil. The organic P concentration in the mineral soil was strongly affected by soil texture, which diminished the effect of tree species on the C to organic P (C : OP) ratio.
Moritz Mainka, Laura Summerauer, Daniel Wasner, Gina Garland, Marco Griepentrog, Asmeret Asefaw Berhe, and Sebastian Doetterl
Biogeosciences, 19, 1675–1689, https://doi.org/10.5194/bg-19-1675-2022, https://doi.org/10.5194/bg-19-1675-2022, 2022
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The largest share of terrestrial carbon is stored in soils, making them highly relevant as regards global change. Yet, the mechanisms governing soil carbon stabilization are not well understood. The present study contributes to a better understanding of these processes. We show that qualitative changes in soil organic matter (SOM) co-vary with alterations of the soil matrix following soil weathering. Hence, the type of SOM that is stabilized in soils might change as soils develop.
Jasmin Fetzer, Emmanuel Frossard, Klaus Kaiser, and Frank Hagedorn
Biogeosciences, 19, 1527–1546, https://doi.org/10.5194/bg-19-1527-2022, https://doi.org/10.5194/bg-19-1527-2022, 2022
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As leaching is a major pathway of nitrogen and phosphorus loss in forest soils, we investigated several potential drivers in two contrasting beech forests. The composition of leachates, obtained by zero-tension lysimeters, varied by season, and climatic extremes influenced the magnitude of leaching. Effects of nitrogen and phosphorus fertilization varied with soil nutrient status and sorption properties, and leaching from the low-nutrient soil was more sensitive to environmental factors.
Karis J. McFarlane, Heather M. Throckmorton, Jeffrey M. Heikoop, Brent D. Newman, Alexandra L. Hedgpeth, Marisa N. Repasch, Thomas P. Guilderson, and Cathy J. Wilson
Biogeosciences, 19, 1211–1223, https://doi.org/10.5194/bg-19-1211-2022, https://doi.org/10.5194/bg-19-1211-2022, 2022
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Planetary warming is increasing seasonal thaw of permafrost, making this extensive old carbon stock vulnerable. In northern Alaska, we found more and older dissolved organic carbon in small drainages later in summer as more permafrost was exposed by deepening thaw. Younger and older carbon did not differ in chemical indicators related to biological lability suggesting this carbon can cycle through aquatic systems and contribute to greenhouse gas emissions as warming increases permafrost thaw.
Pengzhi Zhao, Daniel Joseph Fallu, Sara Cucchiaro, Paolo Tarolli, Clive Waddington, David Cockcroft, Lisa Snape, Andreas Lang, Sebastian Doetterl, Antony G. Brown, and Kristof Van Oost
Biogeosciences, 18, 6301–6312, https://doi.org/10.5194/bg-18-6301-2021, https://doi.org/10.5194/bg-18-6301-2021, 2021
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We investigate the factors controlling the soil organic carbon (SOC) stability and temperature sensitivity of abandoned prehistoric agricultural terrace soils. Results suggest that the burial of former topsoil due to terracing provided an SOC stabilization mechanism. Both the soil C : N ratio and SOC mineral protection regulate soil SOC temperature sensitivity. However, which mechanism predominantly controls SOC temperature sensitivity depends on the age of the buried terrace soils.
Heleen Deroo, Masuda Akter, Samuel Bodé, Orly Mendoza, Haichao Li, Pascal Boeckx, and Steven Sleutel
Biogeosciences, 18, 5035–5051, https://doi.org/10.5194/bg-18-5035-2021, https://doi.org/10.5194/bg-18-5035-2021, 2021
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We assessed if and how incorporation of exogenous organic carbon (OC) such as straw could affect decomposition of native soil organic carbon (SOC) under different irrigation regimes. Addition of exogenous OC promoted dissolution of native SOC, partly because of increased Fe reduction, leading to more net release of Fe-bound SOC. Yet, there was no proportionate priming of SOC-derived DOC mineralisation. Water-saving irrigation can retard both priming of SOC dissolution and mineralisation.
Frances A. Podrebarac, Sharon A. Billings, Kate A. Edwards, Jérôme Laganière, Matthew J. Norwood, and Susan E. Ziegler
Biogeosciences, 18, 4755–4772, https://doi.org/10.5194/bg-18-4755-2021, https://doi.org/10.5194/bg-18-4755-2021, 2021
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Soil respiration is a large and temperature-responsive flux in the global carbon cycle. We found increases in microbial use of easy to degrade substrates enhanced the temperature response of respiration in soils layered as they are in situ. This enhanced response is consistent with soil composition differences in warm relative to cold climate forests. These results highlight the importance of the intact nature of soils rarely studied in regulating responses of CO2 fluxes to changing temperature.
Elisa Bruni, Bertrand Guenet, Yuanyuan Huang, Hugues Clivot, Iñigo Virto, Roberta Farina, Thomas Kätterer, Philippe Ciais, Manuel Martin, and Claire Chenu
Biogeosciences, 18, 3981–4004, https://doi.org/10.5194/bg-18-3981-2021, https://doi.org/10.5194/bg-18-3981-2021, 2021
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Increasing soil organic carbon (SOC) stocks is beneficial for climate change mitigation and food security. One way to enhance SOC stocks is to increase carbon input to the soil. We estimate the amount of carbon input required to reach a 4 % annual increase in SOC stocks in 14 long-term agricultural experiments around Europe. We found that annual carbon input should increase by 43 % under current temperature conditions, by 54 % for a 1 °C warming scenario and by 120 % for a 5 °C warming scenario.
Rainer Brumme, Bernd Ahrends, Joachim Block, Christoph Schulz, Henning Meesenburg, Uwe Klinck, Markus Wagner, and Partap K. Khanna
Biogeosciences, 18, 3763–3779, https://doi.org/10.5194/bg-18-3763-2021, https://doi.org/10.5194/bg-18-3763-2021, 2021
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In order to study the fate of litter nitrogen in forest soils, we combined a leaf litterfall exchange experiment using 15N-labeled leaf litter with long-term element budgets at seven European beech sites in Germany. It appears that fructification intensity, which has increased in recent decades, has a distinct impact on N retention in forest soils. Despite reduced nitrogen deposition, about 6 and 10 kg ha−1 of nitrogen were retained annually in the soils and in the forest stands, respectively.
Lorenz Gfeller, Andrea Weber, Isabelle Worms, Vera I. Slaveykova, and Adrien Mestrot
Biogeosciences, 18, 3445–3465, https://doi.org/10.5194/bg-18-3445-2021, https://doi.org/10.5194/bg-18-3445-2021, 2021
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Our incubation experiment shows that flooding of polluted floodplain soils may induce pulses of both mercury (Hg) and methylmercury to the soil solution and threaten downstream ecosystems. We demonstrate that mobilization of Hg bound to manganese oxides is a relevant process in organic-matter-poor soils. Addition of organic amendments accelerates this mobilization but also facilitates the formation of nanoparticulate Hg and the subsequent fixation of Hg from soil solution to the soil.
Yao Zhang, Jocelyn M. Lavallee, Andy D. Robertson, Rebecca Even, Stephen M. Ogle, Keith Paustian, and M. Francesca Cotrufo
Biogeosciences, 18, 3147–3171, https://doi.org/10.5194/bg-18-3147-2021, https://doi.org/10.5194/bg-18-3147-2021, 2021
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Soil organic matter (SOM) is essential for the health of soils, and the accumulation of SOM helps removal of CO2 from the atmosphere. Here we present the result of the continued development of a mathematical model that simulates SOM and its measurable fractions. In this study, we simulated several grassland sites in the US, and the model generally captured the carbon and nitrogen amounts in SOM and their distribution between the measurable fractions throughout the entire soil profile.
Zhongkui Luo, Raphael A. Viscarra-Rossel, and Tian Qian
Biogeosciences, 18, 2063–2073, https://doi.org/10.5194/bg-18-2063-2021, https://doi.org/10.5194/bg-18-2063-2021, 2021
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Using the data from 141 584 whole-soil profiles across the globe, we disentangled the relative importance of biotic, climatic and edaphic variables in controlling global SOC stocks. The results suggested that soil properties and climate contributed similarly to the explained global variance of SOC in four sequential soil layers down to 2 m. However, the most important individual controls are consistently soil-related, challenging current climate-driven framework of SOC dynamics.
Debjani Sihi, Xiaofeng Xu, Mónica Salazar Ortiz, Christine S. O'Connell, Whendee L. Silver, Carla López-Lloreda, Julia M. Brenner, Ryan K. Quinn, Jana R. Phillips, Brent D. Newman, and Melanie A. Mayes
Biogeosciences, 18, 1769–1786, https://doi.org/10.5194/bg-18-1769-2021, https://doi.org/10.5194/bg-18-1769-2021, 2021
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Humid tropical soils are important sources and sinks of methane. We used model simulation to understand how different kinds of microbes and observed soil moisture and oxygen dynamics contribute to production and consumption of methane along a wet tropical hillslope during normal and drought conditions. Drought alters the diffusion of oxygen and microbial substrates into and out of soil microsites, resulting in enhanced methane release from the entire hillslope during drought recovery.
Mathieu Chassé, Suzanne Lutfalla, Lauric Cécillon, François Baudin, Samuel Abiven, Claire Chenu, and Pierre Barré
Biogeosciences, 18, 1703–1718, https://doi.org/10.5194/bg-18-1703-2021, https://doi.org/10.5194/bg-18-1703-2021, 2021
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Evolution of organic carbon content in soils could be a major driver of atmospheric greenhouse gas concentrations over the next century. Understanding factors controlling carbon persistence in soil is a challenge. Our study of unique long-term bare-fallow samples, depleted in labile organic carbon, helps improve the separation, evaluation and characterization of carbon pools with distinct residence time in soils and gives insight into the mechanisms explaining soil organic carbon persistence.
Melisa A. Diaz, Christopher B. Gardner, Susan A. Welch, W. Andrew Jackson, Byron J. Adams, Diana H. Wall, Ian D. Hogg, Noah Fierer, and W. Berry Lyons
Biogeosciences, 18, 1629–1644, https://doi.org/10.5194/bg-18-1629-2021, https://doi.org/10.5194/bg-18-1629-2021, 2021
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Water-soluble salt and nutrient concentrations of soils collected along the Shackleton Glacier, Antarctica, show distinct geochemical gradients related to latitude, longitude, elevation, soil moisture, and distance from coast and glacier. Machine learning algorithms were used to estimate geochemical gradients for the region given the relationship with geography. Geography and surface exposure age drive salt and nutrient abundances, influencing invertebrate habitat suitability and biogeography.
Marion Schrumpf, Klaus Kaiser, Allegra Mayer, Günter Hempel, and Susan Trumbore
Biogeosciences, 18, 1241–1257, https://doi.org/10.5194/bg-18-1241-2021, https://doi.org/10.5194/bg-18-1241-2021, 2021
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A large amount of organic carbon (OC) in soil is protected against decay by bonding to minerals. We studied the release of mineral-bonded OC by NaF–NaOH extraction and H2O2 oxidation. Unexpectedly, extraction and oxidation removed mineral-bonded OC at roughly constant portions and of similar age distributions, irrespective of mineral composition, land use, and soil depth. The results suggest uniform modes of interactions between OC and minerals across soils in quasi-steady state with inputs.
Lena Rohe, Bernd Apelt, Hans-Jörg Vogel, Reinhard Well, Gi-Mick Wu, and Steffen Schlüter
Biogeosciences, 18, 1185–1201, https://doi.org/10.5194/bg-18-1185-2021, https://doi.org/10.5194/bg-18-1185-2021, 2021
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Total denitrification, i.e. N2O and (N2O + N2) fluxes, of repacked soil cores were analysed for different combinations of soils and water contents. Prediction accuracy of (N2O + N2) fluxes was highest with combined proxies for oxygen demand (CO2 flux) and oxygen supply (anaerobic soil volume fraction). Knowledge of denitrification completeness (product ratio) improved N2O predictions. Substitutions with cheaper proxies (soil organic matter, empirical diffusivity) reduced prediction accuracy.
Severin-Luca Bellè, Asmeret Asefaw Berhe, Frank Hagedorn, Cristina Santin, Marcus Schiedung, Ilja van Meerveld, and Samuel Abiven
Biogeosciences, 18, 1105–1126, https://doi.org/10.5194/bg-18-1105-2021, https://doi.org/10.5194/bg-18-1105-2021, 2021
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Controls of pyrogenic carbon (PyC) redistribution under rainfall are largely unknown. However, PyC mobility can be substantial after initial rain in post-fire landscapes. We conducted a controlled simulation experiment on plots where PyC was applied on the soil surface. We identified redistribution of PyC by runoff and splash and vertical movement in the soil depending on soil texture and PyC characteristics (material and size). PyC also induced changes in exports of native soil organic carbon.
Cited articles
Amonette, J. E.: Improvements to the quantitative assay of nonrefractory
minerals for Fe(II) and total Fe using 1,10-Phenanthroline, Clay. Clay
Miner., 46, 51–62, 1998.
Amonette, J. E., Russell, C. K., Carosino, K. A., Robinson, N. L., and Ho, J.
T.: Toxicity of Al to desulfovibrio desulfuricans, Appl. Environ. Microbiol.,
69, 4057–4066, 2003.
Braunschweig, J., Bosch, J., and Meckenstock, R. U.: Iron oxide nanoparticles
in geomicrobiology: from biogeochemistry to bioremediation, New Biotechnol.,
30, 793–802, 2013.
Chesworth, W.: Encyclopedia of Soil Science, Springer, Dordrecht, 363–369,
2008.
Cornell, R. M. and Schwertmann, U.: The iron oxides: structure, properties,
reactions, occurences and uses, Wiley-VCH Verlag GmbH & Co. KGaA, 2003.
Diaz, J. M., Hansel, C. M., Voelker, B. M., Mendes, C. M., Andeer, P. F., and
Zhang, T.: Widespread production of extracellular superoxide by heterotrophic
bacteria, Science, 340, 1223–1226, 2013.
Garrido-Ramírez, E. G., Theng, B. K. G., and Mora, M. L.: Clays and
oxide minerals as catalysts and nanocatalysts in Fenton-like reactions – A
review, Appl. Clay Sci., 47, 182–192, 2010.
Georgiou, C. D., Sun, H. J., McKay, C. P., Grintzalis, K., Papapostolou, I.,
Zisimopoulos, D., Panagiotidis, K., Zhang, G., Koutsopoulou, E., Christidis,
G. E., and Margiolaki, I.: Evidence for photochemical production of reactive
oxygen species in desert soils, Nat. Commun., 6, 7100,
https://doi.org/10.1038/ncomms8100, 2015.
Goodman, B. A., Worasith, N., and Deng, W.: EPR spectra of a new
radiation-induced paramagnetic centre in kaolins, Clay Miner., 51, 707–714,
2016.
Grosvenor, A. P., Kobe, B. A., Biesinger, M. C., and McIntyre, N. S.:
Investigation of multiplet splitting of Fe 2pXPS spectra and
bonding in iron compounds, Surf. Interface Anal., 36, 1564–1574, 2004.
Imlay, J. A.: Pathways of oxidative damage, Annu. Rev. Microbiol., 57,
395–418, 2003.
Jucker, B. A., Harms, H., and Zehnder, A. J. B.: Adhesion of the positively
charged bacterium Stenotrophomonas (Xanthomonas) maltophilia 70401
to glass and teflon, J. Bacteri., 178, 5472–5479, 1996.
Kleber, M. and Johnson, M. G.: Chapter 3 – Advances in Understanding the
Molecular Structure of Soil Organic Matter: Implications for Interactions in
the Environment, in: Advances in Agronomy, edied by: Donald, L. S., Academic
Press, 77–142, 2010.
Kleber, M., Mikutta, R., Torn, M. S., and Jahn, R.: Poorly crystalline
mineral phases protect organic matter in acid subsoil horizons, Europ. J.
Soil Sci., 56, 717–725, 2005.
Kögel-Knabner, I.: The macromolecular organic composition of plant and
microbial residues as inputs to soil organic matter, Soil Biol. Biochem., 34,
139–162, 2017.
Koegel-Knabner, I., Guggenberger, G., Kleber, M., Kandeler, E., Kalbitz, K.,
Scheu, S., Eusterhues, K., and Leinweber, P.: Organo-mineral associations in
temperate soils: Integrating biology, mineralogy, and organic matter
chemistry, J. Plant Nutrit. Soil Sci., 171, 61–82, 2008.
Kwan, W. P. and Voelker, B. M.: Rates of hydroxyl radical generation and
organic compound oxidation in mineral-catalyzed Fenton-like systems, Environ.
Sci. Technol., 37, 1150–1158, 2003.
Lemire, J. A., Harrison, J. J., and Turner, R. J.: Antimicrobial activity of
metals: mechanisms, molecular targets and applications, Nat. Rev. Microbiol.,
11, 371–384, 2013.
Li, L., Abe, Y., Nagasawa, Y., Kudo, R., Usui, N., Imai, K., Mashino, T.,
Mochizuki, M., and Miyata, N.: An HPLC assay of hydroxyl radicals by the
hydroxylation reaction of terephthalic acid, Biomed. Chromatogr., 18,
470–474, 2004.
Liang, C., Schimel, J. P., and Jastrow, J. D.: The importance of anabolism in
microbial control over soil carbon storage, Nat. Microbiol., 2, 17105,
https://doi.org/10.1038/nmicrobiol.2017.105, 2017.
Liu, D., Dong, H., Agrawal, A., Singh, R., Zhang, J., and Wang, H.:
Inhibitory effect of clay mineral on methanogenesis by Methanosarcina mazei and Methanothermobacter thermautotrophicus, Appl. Clay Sci.,
126, 25–32, 2016.
Londono, S. C., Hartnett, H. E., and Williams, L. B.: Antibacterial activity
of aluminum in clay from the Colombian Amazon, Environ. Sci. Technol., 51,
2401–2408, 2017.
Luo, L., Lv, J., Xu, C., and Zhang, S.: Strategy for characterization of
distribution and associations of organobromine compounds in soil using
synchrotron radiation based spectromicroscopies, Anal. Chem., 86,
11002–11005, 2014.
McMahon, S., Anderson, R. P., Saupe, E. E., and Briggs, D. E. G.:
Experimental evidence that clay inhibits bacterial decomposers: Implications
for preservation of organic fossils, Geology, 44, 867–870, 2016.
Melton, E. D., Swanner, E. D., Behrens, S., Schmidt, C., and Kappler, A.: The
interplay of microbially mediated and abiotic reactions in the biogeochemical
Fe cycle, Nat. Rev. Microbiol., 12, 797–808, 2014.
Meunier, A.: Clays, Springer Berlin Heidelberg, New York, 2005.
Morrison, K. D., Misra, R., and Williams, L. B.: Unearthing the antibacterial
mechanism of medicinal clay: A geochemical approach to combating antibiotic
resistance, Sci. Rep., 6, 19043, https://doi.org/10.1038/srep19043, 2016.
Page, S. E., Kling, G. W., Sander, M., Harrold, K. H., Logan, J. R., McNeill,
K., and Cory, R. M.: Dark formation of hydroxyl radical in arctic soil and
surface waters, Environ. Sci. Technol., 47, 12860–12867, 2013.
Petigara, B. R., Blough, N. V., and Mignerey, A. C.: Mechanisms of hydrogen
peroxide decomposition in soils, Environ. Sci. Technol., 36, 639–645, 2002.
Piccolo, A., Spaccini, R., Nebbioso, A., and Mazzei, P.: Carbon sequestration
in soil by in situ catalyzed photo-oxidative polymerization of soil organic
matter, Environ. Sci. Technol., 45, 6697–6702, 2011.
Piña, R. G. and Cervantes, C.: Microbial interactions with aluminium,
Biometals, 9, 311–316, 1996.
Polerecky, L., Adam, B., Milucka, J., Musat, N., Vagner, T., and Kuypers, M.
M.: Look@NanoSIMS – a tool for the analysis of nanoSIMS data in
environmental microbiology, Environ. Microbiol., 14, 1009–1023, 2012.
Schmidt, M. W., Torn, M. S., Abiven, S., Dittmar, T., Guggenberger, G.,
Janssens, I. A., Kleber, M., Kogel-Knabner, I., Lehmann, J., Manning, D. A.,
Nannipieri, P., Rasse, D. P., Weiner, S., and Trumbore, S. E.: Persistence of
soil organic matter as an ecosystem property, Nature, 478, 49–56, 2011.
Schoonen, M. A. A., Cohn, C. A., Roemer, E., Laffers, R., Simon, S. R., and
O'Riordan, T.: Mineral-induced formation of reactive oxygen species, Rev.
Mineral. Geochem., 64, 179–221, 2006.
Schwertmann, U. and Cornell, R. M.: Iron Oxides in the Laboratory:
Preparation and characterization, edited by: Schwertmann, U. and Cornell, R.
M., Wiley-VCH Verlag GmbH, 121–134, 2007.
Shi, L., Dong, H. L., Yu, H. Q., Reguera, G., Beyenal, H., Lu, A. H., and
Fredrickson, J. K.: Extracellular electron transfer mechanisms between
microorganisms and minerals, Nat. Rev. Microbiol., 14, 651–662, 2016.
Stohs, S. J. and Bagchi, D.: Oxidative mechanisms in the toxicity of
metal-ions, Free Rad. Bio. Med., 18, 321–336, 1995.
Sun, F. S., Li, Y. Q., Wang, X., Chi, Z. L., and Yu, G. H.: Using new
hetero-spectral two-dimensional correlation analyses and
synchrotron-radiation-based spectromicroscopy to characterize binding of Cu
to soil dissolved organic matter, Environ. Pollut., 223, 457–465, 2017a.
Sun, F. S., Polizzotto, M. L., Guan, D. X., Wu, J., Shen, Q. R., Ran, W.,
Wang, B. R., and Yu, G. H.: Exploring the interactions and binding sites
between Cd and functional groups in soil using two-dimensional correlation
spectroscopy and synchrotron radiation based spectromicroscopies, J. Hazard.
Mater., 326, 18–25, 2017b.
Tombácz, E. and Szekeres, M.: Surface charge heterogeneity of kaolinite
in aqueous suspension in comparison with montmorillonite, Appl. Clay Sci.,
34, 105–124, 2006.
Usman, M., Hanna, K., and Haderlein, S.: Fenton oxidation to remediate PAHs
in contaminated soils: A critical review of major limitations and
counter-strategies, Sci. Total Environ., 569/570, 179–190, 2016.
Usman, M., Byrne, J. M., Chaudhary, A., Orsetti, S., Hanna, K., Ruby, C.,
Kappler, A., and Haderlein, S. B.: Magnetite and green rust: Synthesis,
properties, and environmental applications of mixed-valent iron minerals,
Chem. Rev., 118, 3251–3304, 2018.
Wang, D., Zhao, L., Ma, H., Zhang, H., and Guo, L. H.: Quantitative analysis
of reactive oxygen species photogenerated on metal oxide nanoparticles and
their bacteria toxicity: The role of superoxide radicals, Environ. Sci.
Technol., 51, 10137–10145, 2017.
Wang, X., Dong, H., Zeng, Q., Xia, Q., Zhang, L., and Zhou, Z.: Reduced
iron-containing clay minerals as antibacterial agents, Environ. Sci.
Technol., 51, 7639–7647, 2017.
Wilke, M., Farges, F., Petit, P. E., Brown, G. E., and Martin, F.: Oxidation
state and coordination of Fe in minerals: An Fe K-XANES spectroscopic
study, Am. Mineral., 286, 714–730, 2001.
Williams, L. B.: Geomimicry: Harnessing the antibacterial action of clays,
Clay Miner., 52, 1–24, 2017.
Williams, L. B. and Haydel, S. E.: Evaluation of the medicinal use of clay
minerals as antibacterial agents, Int. Geol. Rev., 52, 745–770, 2010.
Williams, L. B., Haydel, S. E., Jr, R. F. G., and Eberl, D. D.: Chemcial and
mineralogical charcteristics of French green clays used for healing, Clay.
Clay Miner., 56, 437–452, 2008.
Williams, L. B., Metge, D. W., Eberl, D. D., Harvey, R. W., Turner, A. G.,
Prapaipong, P., and Poret-Peterson, A. T.: What makes a natural clay
antibacterial?- Environ. Sci. Technol., 45, 3768–3773, 2011.
Wilson, L. A. and Butterfield, N. J.: Sediment effects on the preservation of
Burgess Shale-Type compression fossils, Palaios, 29, 145–154, 2014.
Wu, H., Chen, W., Rong, X., Cai, P., Dai, K., and Huang, Q.: Soil colloids
and minerals modulate metabolic activity of measured using microcalorimetry,
Geomicrobiol. J., 31, 590–596, 2014.
Yamashita, T. and Hayes, P.: Analysis of XPS spectra of Fe2+ and
Fe3+ ions in oxide materials, Appl. Surf. Sci., 254, 2441–2449, 2008.
Yu, G. H., Xiao, J., Hu, S. J., Polizzotto, M. L., Zhao, F. J., McGrath, S.
P., Li, H., Ran, W., and Shen, Q. R.: Mineral availability as a key regulator
of soil carbon storage, Environ. Sci. Technol., 51, 4960–4969, 2017.
Zhou, T., Chen, D., Li, C., Sun, Q., Li, L., Liu, F., Shen, Q., and Shen, B.:
Isolation and characterization of Pseudomonas brassicacearum J12 as
an antagonist against ralstonia solanacearum and identification of its
antimicrobial components, Microbiol. Res., 167, 388–394, 2012.
Short summary
Mineral binding is a major mechanism for soil carbon (C) stabilization. However, soil minerals can also inhibit the growth of bacteria that protect organic C from decay. Here the findings indicate that reduced surface Fe(II) derived from Fe(III)-containing minerals inhibits the growth of bacteria via a free-radical mechanism, which may serve as an ubiquitous mechanism between iron minerals and all of the heterotrophic bacteria in view of bacteria as a vast source of superoxide.
Mineral binding is a major mechanism for soil carbon (C) stabilization. However, soil minerals...
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