Articles | Volume 17, issue 8
https://doi.org/10.5194/bg-17-2263-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-17-2263-2020
© Author(s) 2020. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
22 Apr 2020
Research article |
| 22 Apr 2020
| 22 Apr 2020
Regulation of nitrous oxide production in low-oxygen waters off the coast of Peru
Claudia Frey
CORRESPONDING AUTHOR
Department of Geoscience, Princeton University, Princeton, Guyot Hall, Princeton, NJ 08544, USA
Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
current address: Department of Environmental Science, University of Basel,
Bernoullistrasse 30, 4056 Basel, Switzerland
Hermann W. Bange
Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
Eric P. Achterberg
Helmholtz Centre for Ocean Research Kiel, Wischhofstr. 1–3, 24149 Kiel, Germany
Amal Jayakumar
Department of Geoscience, Princeton University, Princeton, Guyot Hall, Princeton, NJ 08544, USA
Carolin R. Löscher
Department of Biology, Nordcee, Danish Institute for Advanced Study, University of Southern Denmark, Odense, Denmark
Damian L. Arévalo-Martínez
Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
Elizabeth León-Palmero
Departamento de Ecología, Facultad de Ciencias, Universidad de Granada, 18071, Granada, Spain
Mingshuang Sun
Helmholtz Centre for Ocean Research Kiel, Düsternbrooker Weg 20, 24105 Kiel, Germany
Xin Sun
Department of Geoscience, Princeton University, Princeton, Guyot Hall, Princeton, NJ 08544, USA
Ruifang C. Xie
Helmholtz Centre for Ocean Research Kiel, Wischhofstr. 1–3, 24149 Kiel, Germany
Sergey Oleynik
Department of Geoscience, Princeton University, Princeton, Guyot Hall, Princeton, NJ 08544, USA
Bess B. Ward
Department of Geoscience, Princeton University, Princeton, Guyot Hall, Princeton, NJ 08544, USA
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John C. Tracey, Andrew R. Babbin, Elizabeth Wallace, Xin Sun, Katherine L. DuRussel, Claudia Frey, Donald E. Martocello III, Tyler Tamasi, Sergey Oleynik, and Bess B. Ward
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Guanlin Li, Damian L. Arévalo-Martínez, Riel Carlo O. Ingeniero, and Hermann W. Bange
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Preprint archived
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Kristian Spilling, Jonna Piiparinen, Eric P. Achterberg, Javier Arístegui, Lennart T. Bach, Maria T. Camarena-Gómez, Elisabeth von der Esch, Martin A. Fischer, Markel Gómez-Letona, Nauzet Hernández-Hernández, Judith Meyer, Ruth A. Schmitz, and Ulf Riebesell
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Hanna I. Campen, Damian L. Arévalo-Martínez, and Hermann W. Bange
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Biogeosciences, 20, 647–662, https://doi.org/10.5194/bg-20-647-2023, https://doi.org/10.5194/bg-20-647-2023, 2023
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Sonja Gindorf, Hermann W. Bange, Dennis Booge, and Annette Kock
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Biogeosciences, 19, 3425–3444, https://doi.org/10.5194/bg-19-3425-2022, https://doi.org/10.5194/bg-19-3425-2022, 2022
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Christian Furbo Reeder, Ina Stoltenberg, Jamileh Javidpour, and Carolin Regina Löscher
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Yanan Zhao, Dennis Booge, Christa A. Marandino, Cathleen Schlundt, Astrid Bracher, Elliot L. Atlas, Jonathan Williams, and Hermann W. Bange
Biogeosciences, 19, 701–714, https://doi.org/10.5194/bg-19-701-2022, https://doi.org/10.5194/bg-19-701-2022, 2022
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We present here, for the first time, simultaneously measured dimethylsulfide (DMS) seawater concentrations and DMS atmospheric mole fractions from the Peruvian upwelling region during two cruises in December 2012 and October 2015. Our results indicate low oceanic DMS concentrations and atmospheric DMS molar fractions in surface waters and the atmosphere, respectively. In addition, the Peruvian upwelling region was identified as an insignificant source of DMS emissions during both periods.
Shao-Min Chen, Ulf Riebesell, Kai G. Schulz, Elisabeth von der Esch, Eric P. Achterberg, and Lennart T. Bach
Biogeosciences, 19, 295–312, https://doi.org/10.5194/bg-19-295-2022, https://doi.org/10.5194/bg-19-295-2022, 2022
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Oxygen minimum zones in the ocean are characterized by enhanced carbon dioxide (CO2) levels and are being further acidified by increasing anthropogenic atmospheric CO2. Here we report CO2 system measurements in a mesocosm study offshore Peru during a rare coastal El Niño event to investigate how CO2 dynamics may respond to ongoing ocean deoxygenation. Our observations show that nitrogen limitation, productivity, and plankton community shift play an important role in driving the CO2 dynamics.
Wangwang Ye, Hermann W. Bange, Damian L. Arévalo-Martínez, Hailun He, Yuhong Li, Jianwen Wen, Jiexia Zhang, Jian Liu, Man Wu, and Liyang Zhan
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-334, https://doi.org/10.5194/bg-2021-334, 2022
Manuscript not accepted for further review
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CH4 is the second important greenhouse gas after CO2. We show that CH4 consumption and sea-ice melting influence the CH4 distribution in the Ross Sea (Southern Ocean), causing undersaturation and net uptake of CH4 during summertime. This study confirms the capability of surface water in the high-latitude Southern Ocean regions to take up atmospheric CH4 which, in turn, will help to improve predictions of how CH4 release/uptake from the ocean will develop when sea-ice retreats in the future.
Carolin R. Löscher
Biogeosciences, 18, 4953–4963, https://doi.org/10.5194/bg-18-4953-2021, https://doi.org/10.5194/bg-18-4953-2021, 2021
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The Bay of Bengal (BoB) is classically seen as an ocean region with low primary production, which has been predicted to decrease even further. Here, the importance of such a trend is used to explore what could happen to the BoB's low-oxygen core waters if primary production decreases. Lower biological production leads to less oxygen loss in deeper waters by respiration; thus it could be that oxygen will not further decrease and the BoB will not become anoxic, different to other low-oxygen areas.
Kai G. Schulz, Eric P. Achterberg, Javier Arístegui, Lennart T. Bach, Isabel Baños, Tim Boxhammer, Dirk Erler, Maricarmen Igarza, Verena Kalter, Andrea Ludwig, Carolin Löscher, Jana Meyer, Judith Meyer, Fabrizio Minutolo, Elisabeth von der Esch, Bess B. Ward, and Ulf Riebesell
Biogeosciences, 18, 4305–4320, https://doi.org/10.5194/bg-18-4305-2021, https://doi.org/10.5194/bg-18-4305-2021, 2021
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Upwelling of nutrient-rich deep waters to the surface make eastern boundary upwelling systems hot spots of marine productivity. This leads to subsurface oxygen depletion and the transformation of bioavailable nitrogen into inert N2. Here we quantify nitrogen loss processes following a simulated deep water upwelling. Denitrification was the dominant process, and budget calculations suggest that a significant portion of nitrogen that could be exported to depth is already lost in the surface ocean.
Neil J. Wyatt, Angela Milne, Eric P. Achterberg, Thomas J. Browning, Heather A. Bouman, E. Malcolm S. Woodward, and Maeve C. Lohan
Biogeosciences, 18, 4265–4280, https://doi.org/10.5194/bg-18-4265-2021, https://doi.org/10.5194/bg-18-4265-2021, 2021
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Using data collected during two expeditions to the South Atlantic Ocean, we investigated how the interaction between external sources and biological activity influenced the availability of the trace metals zinc and cobalt. This is important as both metals play essential roles in the metabolism and growth of phytoplankton and thus influence primary productivity of the oceans. We found seasonal changes in both processes that helped explain upper-ocean trace metal cycling.
Siqi Wu, Moge Du, Xianhui Sean Wan, Corday Selden, Mar Benavides, Sophie Bonnet, Robert Hamersley, Carolin R. Löscher, Margaret R. Mulholland, Xiuli Yan, and Shuh-Ji Kao
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-104, https://doi.org/10.5194/bg-2021-104, 2021
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Nitrogen (N2) fixation is one of the most important nutrient sources to the ocean. Here, we report N2 fixation in the deep, dark ocean in the South China Sea via a highly sensitive new method and elaborate controls, showing the overlooked importance of N2 fixation in the deep ocean. By global data compilation, we also provide an easy measured basic parameter to estimate deep N2 fixation. Our study may help to expand the area limit of N2 fixation studies and better constrain global N2 fixation.
Maximiliano J. Vergara-Jara, Mark J. Hopwood, Thomas J. Browning, Insa Rapp, Rodrigo Torres, Brian Reid, Eric P. Achterberg, and José Luis Iriarte
Ocean Sci., 17, 561–578, https://doi.org/10.5194/os-17-561-2021, https://doi.org/10.5194/os-17-561-2021, 2021
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Ash from the Calbuco 2015 eruption spread across northern Patagonia, the SE Pacific and the SW Atlantic. In the Pacific, a phytoplankton bloom corresponded closely to the volcanic ash plume, suggesting that ash fertilized this region of the ocean. No such fertilization was found in the Atlantic where nutrients plausibly supplied by ash were likely already in excess of phytoplankton demand. In Patagonia, the May bloom was more intense than usual, but the mechanistic link to ash was less clear.
Gerd Krahmann, Damian L. Arévalo-Martínez, Andrew W. Dale, Marcus Dengler, Anja Engel, Nicolaas Glock, Patricia Grasse, Johannes Hahn, Helena Hauss, Mark Hopwood, Rainer Kiko, Alexandra Loginova, Carolin R. Löscher, Marie Maßmig, Alexandra-Sophie Roy, Renato Salvatteci, Stefan Sommer, Toste Tanhua, and Hela Mehrtens
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2020-308, https://doi.org/10.5194/essd-2020-308, 2021
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The project "Climate-Biogeochemistry Interactions in the Tropical Ocean" (SFB 754) was a multidisciplinary research project active from 2008 to 2019 aimed at a better understanding of the coupling between the tropical climate and ocean circulation and the ocean's oxygen and nutrient balance. On 34 research cruises, mainly in the Southeast Tropical Pacific and the Northeast Tropical Atlantic, 1071 physical, chemical and biological data sets were collected.
Yanan Zhao, Cathleen Schlundt, Dennis Booge, and Hermann W. Bange
Biogeosciences, 18, 2161–2179, https://doi.org/10.5194/bg-18-2161-2021, https://doi.org/10.5194/bg-18-2161-2021, 2021
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We present a unique and comprehensive time-series study of biogenic sulfur compounds in the southwestern Baltic Sea, from 2009 to 2018. Dimethyl sulfide is one of the key players regulating global climate change, as well as dimethylsulfoniopropionate and dimethyl sulfoxide. Their decadal trends did not follow increasing temperature but followed some algae group abundances at the Boknis Eck Time Series Station.
Yu-Te Hsieh, Walter Geibert, E. Malcolm S. Woodward, Neil J. Wyatt, Maeve C. Lohan, Eric P. Achterberg, and Gideon M. Henderson
Biogeosciences, 18, 1645–1671, https://doi.org/10.5194/bg-18-1645-2021, https://doi.org/10.5194/bg-18-1645-2021, 2021
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The South Atlantic near 40° S is one of the high-productivity and most dynamic nutrient regions in the oceans, but the sources and fluxes of trace elements (TEs) to this region remain unclear. This study investigates seawater Ra-228 and provides important constraints on ocean mixing and dissolved TE fluxes to this region. Vertical mixing is a more important source than aeolian or shelf inputs in this region, but particulate or winter deep-mixing inputs may be required to balance the TE budgets.
Amal Jayakumar and Bess B. Ward
Biogeosciences, 17, 5953–5966, https://doi.org/10.5194/bg-17-5953-2020, https://doi.org/10.5194/bg-17-5953-2020, 2020
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Diversity and community composition of nitrogen-fixing microbes in the three main oxygen minimum zones of the world ocean were investigated using nifH clone libraries. Representatives of three main clusters of nifH genes were detected. Sequences were most diverse in the surface waters. The most abundant OTUs were affiliated with Alpha- and Gammaproteobacteria. The sequences were biogeographically distinct and the dominance of a few OTUs was commonly observed in OMZs in this (and other) studies.
Samuel T. Wilson, Alia N. Al-Haj, Annie Bourbonnais, Claudia Frey, Robinson W. Fulweiler, John D. Kessler, Hannah K. Marchant, Jana Milucka, Nicholas E. Ray, Parvadha Suntharalingam, Brett F. Thornton, Robert C. Upstill-Goddard, Thomas S. Weber, Damian L. Arévalo-Martínez, Hermann W. Bange, Heather M. Benway, Daniele Bianchi, Alberto V. Borges, Bonnie X. Chang, Patrick M. Crill, Daniela A. del Valle, Laura Farías, Samantha B. Joye, Annette Kock, Jabrane Labidi, Cara C. Manning, John W. Pohlman, Gregor Rehder, Katy J. Sparrow, Philippe D. Tortell, Tina Treude, David L. Valentine, Bess B. Ward, Simon Yang, and Leonid N. Yurganov
Biogeosciences, 17, 5809–5828, https://doi.org/10.5194/bg-17-5809-2020, https://doi.org/10.5194/bg-17-5809-2020, 2020
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The oceans are a net source of the major greenhouse gases; however there has been little coordination of oceanic methane and nitrous oxide measurements. The scientific community has recently embarked on a series of capacity-building exercises to improve the interoperability of dissolved methane and nitrous oxide measurements. This paper derives from a workshop which discussed the challenges and opportunities for oceanic methane and nitrous oxide research in the near future.
Jan Lüdke, Marcus Dengler, Stefan Sommer, David Clemens, Sören Thomsen, Gerd Krahmann, Andrew W. Dale, Eric P. Achterberg, and Martin Visbeck
Ocean Sci., 16, 1347–1366, https://doi.org/10.5194/os-16-1347-2020, https://doi.org/10.5194/os-16-1347-2020, 2020
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We analyse the intraseasonal variability of the alongshore circulation off Peru in early 2017, this circulation is very important for the supply of nutrients to the upwelling regime. The causes of this variability and its impact on the biogeochemistry are investigated. The poleward flow is strengthened during the observed time period, likely by a downwelling coastal trapped wave. The stronger current causes an increase in nitrate and reduces the deficit of fixed nitrogen relative to phosphorus.
Ruifang C. Xie, Frédéric A. C. Le Moigne, Insa Rapp, Jan Lüdke, Beat Gasser, Marcus Dengler, Volker Liebetrau, and Eric P. Achterberg
Biogeosciences, 17, 4919–4936, https://doi.org/10.5194/bg-17-4919-2020, https://doi.org/10.5194/bg-17-4919-2020, 2020
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Thorium-234 (234Th) is widely used to study carbon fluxes from the surface ocean to depth. But few studies stress the relevance of oceanic advection and diffusion on the downward 234Th fluxes in nearshore environments. Our study in offshore Peru showed strong temporal variations in both the importance of physical processes on 234Th flux estimates and the oceanic residence time of 234Th, whereas salinity-derived seawater 238U activities accounted for up to 40 % errors in 234Th flux estimates.
Lennart Thomas Bach, Allanah Joy Paul, Tim Boxhammer, Elisabeth von der Esch, Michelle Graco, Kai Georg Schulz, Eric Achterberg, Paulina Aguayo, Javier Arístegui, Patrizia Ayón, Isabel Baños, Avy Bernales, Anne Sophie Boegeholz, Francisco Chavez, Gabriela Chavez, Shao-Min Chen, Kristin Doering, Alba Filella, Martin Fischer, Patricia Grasse, Mathias Haunost, Jan Hennke, Nauzet Hernández-Hernández, Mark Hopwood, Maricarmen Igarza, Verena Kalter, Leila Kittu, Peter Kohnert, Jesus Ledesma, Christian Lieberum, Silke Lischka, Carolin Löscher, Andrea Ludwig, Ursula Mendoza, Jana Meyer, Judith Meyer, Fabrizio Minutolo, Joaquin Ortiz Cortes, Jonna Piiparinen, Claudia Sforna, Kristian Spilling, Sonia Sanchez, Carsten Spisla, Michael Sswat, Mabel Zavala Moreira, and Ulf Riebesell
Biogeosciences, 17, 4831–4852, https://doi.org/10.5194/bg-17-4831-2020, https://doi.org/10.5194/bg-17-4831-2020, 2020
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The eastern boundary upwelling system off Peru is among Earth's most productive ocean ecosystems, but the factors that control its functioning are poorly constrained. Here we used mesocosms, moored ~ 6 km offshore Peru, to investigate how processes in plankton communities drive key biogeochemical processes. We show that nutrient and light co-limitation keep productivity and export at a remarkably constant level while stoichiometry changes strongly with shifts in plankton community structure.
Anna Plass, Christian Schlosser, Stefan Sommer, Andrew W. Dale, Eric P. Achterberg, and Florian Scholz
Biogeosciences, 17, 3685–3704, https://doi.org/10.5194/bg-17-3685-2020, https://doi.org/10.5194/bg-17-3685-2020, 2020
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We compare the cycling of Fe and Cd in sulfidic sediments of the Peruvian oxygen minimum zone. Due to the contrasting solubility of their sulfide minerals, the sedimentary Fe release and Cd burial fluxes covary with spatial and temporal distributions of H2S. Depending on the solubility of their sulfide minerals, sedimentary trace metal fluxes will respond differently to ocean deoxygenation/expansion of H2S concentrations, which may change trace metal stoichiometry of upwelling water masses.
Xiao Ma, Mingshuang Sun, Sinikka T. Lennartz, and Hermann W. Bange
Biogeosciences, 17, 3427–3438, https://doi.org/10.5194/bg-17-3427-2020, https://doi.org/10.5194/bg-17-3427-2020, 2020
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Monthly measurements of dissolved methane (CH4), a potent greenhouse gas, were conducted at Boknis Eck (BE), a time-series station in the southwestern Baltic Sea, from June 2006. In general CH4 concentrations increased with depth. High concentrations in the upper layer were linked to saline water inflow. Eckernförde Bay emitted CH4 to the atmosphere throughout the monitoring period. No significant trend was detected in CH4 concentrations or emissions during 2006–2017.
Elizabeth León-Palmero, Alba Contreras-Ruiz, Ana Sierra, Rafael Morales-Baquero, and Isabel Reche
Biogeosciences, 17, 3223–3245, https://doi.org/10.5194/bg-17-3223-2020, https://doi.org/10.5194/bg-17-3223-2020, 2020
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CH4 emissions from reservoirs are responsible for the majority of the climatic forcing of these ecosystems. The origin of the recurrent CH4 supersaturation in oxic waters is still controversial. We found that the dissolved CH4 concentration varied by up to 4 orders of magnitude in the water column of 12 reservoirs and was consistently supersaturated. Our findings suggest that photosynthetic picoeukaryotes can play a significant role in determining CH4 concentration in oxic waters.
Mark J. Hopwood, Dustin Carroll, Thorben Dunse, Andy Hodson, Johnna M. Holding, José L. Iriarte, Sofia Ribeiro, Eric P. Achterberg, Carolina Cantoni, Daniel F. Carlson, Melissa Chierici, Jennifer S. Clarke, Stefano Cozzi, Agneta Fransson, Thomas Juul-Pedersen, Mie H. S. Winding, and Lorenz Meire
The Cryosphere, 14, 1347–1383, https://doi.org/10.5194/tc-14-1347-2020, https://doi.org/10.5194/tc-14-1347-2020, 2020
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Here we compare and contrast results from five well-studied Arctic field sites in order to understand how glaciers affect marine biogeochemistry and marine primary production. The key questions are listed as follows. Where and when does glacial freshwater discharge promote or reduce marine primary production? How does spatio-temporal variability in glacial discharge affect marine primary production? And how far-reaching are the effects of glacial discharge on marine biogeochemistry?
Mark J. Hopwood, Nicolas Sanchez, Despo Polyviou, Øystein Leiknes, Julián Alberto Gallego-Urrea, Eric P. Achterberg, Murat V. Ardelan, Javier Aristegui, Lennart Bach, Sengul Besiktepe, Yohann Heriot, Ioanna Kalantzi, Tuba Terbıyık Kurt, Ioulia Santi, Tatiana M. Tsagaraki, and David Turner
Biogeosciences, 17, 1309–1326, https://doi.org/10.5194/bg-17-1309-2020, https://doi.org/10.5194/bg-17-1309-2020, 2020
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Hydrogen peroxide, H2O2, is formed naturally in sunlight-exposed water by photochemistry. At high concentrations it is undesirable to biological cells because it is a stressor. Here, across a range of incubation experiments in diverse marine environments (Gran Canaria, the Mediterranean, Patagonia and Svalbard), we determine that two factors consistently affect the H2O2 concentrations irrespective of geographical location: bacteria abundance and experiment design.
Mark J. Hopwood, Carolina Santana-González, Julian Gallego-Urrea, Nicolas Sanchez, Eric P. Achterberg, Murat V. Ardelan, Martha Gledhill, Melchor González-Dávila, Linn Hoffmann, Øystein Leiknes, Juana Magdalena Santana-Casiano, Tatiana M. Tsagaraki, and David Turner
Biogeosciences, 17, 1327–1342, https://doi.org/10.5194/bg-17-1327-2020, https://doi.org/10.5194/bg-17-1327-2020, 2020
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Fe is an essential micronutrient. Fe(III)-organic species are thought to account for > 99 % of dissolved Fe in seawater. Here we quantified Fe(II) during experiments in Svalbard, Gran Canaria, and Patagonia. Fe(II) was always a measurable fraction of dissolved Fe up to 65 %. Furthermore, when Fe(II) was allowed to decay in the dark, it remained present longer than predicted by kinetic equations, suggesting that Fe(II) is a more important fraction of dissolved Fe in seawater than widely recognized.
Carolin R. Löscher, Wiebke Mohr, Hermann W. Bange, and Donald E. Canfield
Biogeosciences, 17, 851–864, https://doi.org/10.5194/bg-17-851-2020, https://doi.org/10.5194/bg-17-851-2020, 2020
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Oxygen minimum zones (OMZs) are ocean areas severely depleted in oxygen as a result of physical, chemical, and biological processes. Biologically, organic material is produced in the sea surface and exported to deeper waters, where it respires. In the Bay of Bengal (BoB), an OMZ is present, but there are traces of oxygen left. Our study now suggests that this is because one key process, nitrogen fixation, is absent in the BoB, thus preventing primary production and consecutive respiration.
Ye Tian, Gui-Peng Yang, Chun-Ying Liu, Pei-Feng Li, Hong-Tao Chen, and Hermann W. Bange
Ocean Sci., 16, 135–148, https://doi.org/10.5194/os-16-135-2020, https://doi.org/10.5194/os-16-135-2020, 2020
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Nitric oxide (NO) could be produced by nitrite photolysis; the rates from dissolved nitrite in artificial seawater showed increasing trends with decreasing pH, increasing temperatures, and increasing salinity. However, NO photoproduction from the natural seawater samples did not show correlations with pH, water temperature, salinity, or dissolved nitrite concentrations in the western tropical North Pacific Ocean (WNTP). And there were other NO loss processes in the surface layer of WNTP.
Thomas Holding, Ian G. Ashton, Jamie D. Shutler, Peter E. Land, Philip D. Nightingale, Andrew P. Rees, Ian Brown, Jean-Francois Piolle, Annette Kock, Hermann W. Bange, David K. Woolf, Lonneke Goddijn-Murphy, Ryan Pereira, Frederic Paul, Fanny Girard-Ardhuin, Bertrand Chapron, Gregor Rehder, Fabrice Ardhuin, and Craig J. Donlon
Ocean Sci., 15, 1707–1728, https://doi.org/10.5194/os-15-1707-2019, https://doi.org/10.5194/os-15-1707-2019, 2019
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FluxEngine is an open-source software toolbox designed to allow for the easy and accurate calculation of air–sea gas fluxes. This article describes new functionality and capabilities, which include the ability to calculate fluxes for nitrous oxide and methane, optimisation for running FluxEngine on a stand-alone desktop computer, and extensive new features to support the in situ measurement community. Four research case studies are used to demonstrate these new features.
Adeline N. Y. Cojean, Jakob Zopfi, Alan Gerster, Claudia Frey, Fabio Lepori, and Moritz F. Lehmann
Biogeosciences, 16, 4705–4718, https://doi.org/10.5194/bg-16-4705-2019, https://doi.org/10.5194/bg-16-4705-2019, 2019
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Our results demonstrate the importance of oxygen in regulating the fate of nitrogen (N) in the sediments of Lake Lugano south basin, Switzerland. Hence, our study suggests that, by changing oxygen concentration in bottom waters, the seasonal water column turnover may significantly regulate the partitioning between N removal and N recycling in surface sediments, and it is likely that a similar pattern can be expected in a wide range of environments.
Ye Tian, Chao Xue, Chun-Ying Liu, Gui-Peng Yang, Pei-Feng Li, Wei-Hua Feng, and Hermann W. Bange
Biogeosciences, 16, 4485–4496, https://doi.org/10.5194/bg-16-4485-2019, https://doi.org/10.5194/bg-16-4485-2019, 2019
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Nitric oxide (NO) seems to be widespread, with different functions in the marine ecosystem, but we know little about it. Concentrations of NO were in a range from below the limit of detection to 616 pmol L−1 at the surface and 482 pmol L−1 at the bottom of the Bohai and Yellow seas. The study region was a source of atmospheric NO. Net NO sea-to-air fluxes were much lower than NO photoproduction rates, implying that the NO produced in the mixed layer was rapidly consumed before entering the air.
Hermann W. Bange, Chun Hock Sim, Daniel Bastian, Jennifer Kallert, Annette Kock, Aazani Mujahid, and Moritz Müller
Biogeosciences, 16, 4321–4335, https://doi.org/10.5194/bg-16-4321-2019, https://doi.org/10.5194/bg-16-4321-2019, 2019
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Nitrous oxide (N2O) and methane (CH4) are atmospheric trace gases which play important roles in the climate and atmospheric chemistry of the Earth. However, little is known about their emissions from rivers and estuaries. To this end, concentrations of N2O and CH4 were measured during a seasonal study in six rivers and estuaries in northwestern Borneo. The concentrations of both gases were mainly driven by rainfall. The rivers and estuaries were an overall net source of atmospheric N2O and CH4.
Insa Rapp, Christian Schlosser, Jan-Lukas Menzel Barraqueta, Bernhard Wenzel, Jan Lüdke, Jan Scholten, Beat Gasser, Patrick Reichert, Martha Gledhill, Marcus Dengler, and Eric P. Achterberg
Biogeosciences, 16, 4157–4182, https://doi.org/10.5194/bg-16-4157-2019, https://doi.org/10.5194/bg-16-4157-2019, 2019
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The availability of iron (Fe) affects phytoplankton growth in large parts of the ocean. Shelf sediments, particularly in oxygen minimum zones, are a major source of Fe and other essential micronutrients, such as cobalt (Co) and manganese (Mn). We observed enhanced concentrations of Fe, Co, and Mn corresponding with low oxygen concentrations along the Mauritanian shelf, indicating that the projected future decrease in oxygen concentrations may result in increases in Fe, Mn, and Co concentrations.
Xiao Ma, Sinikka T. Lennartz, and Hermann W. Bange
Biogeosciences, 16, 4097–4111, https://doi.org/10.5194/bg-16-4097-2019, https://doi.org/10.5194/bg-16-4097-2019, 2019
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Monthly measurements of nitrous oxide (N2O), a potent greenhouse gas and ozone depletion agent, were conducted at Boknis Eck (BE), a time series station in the southwestern Baltic Sea, since July 2005. Low N2O concentrations were observed in autumn and high in winter and early spring. Dissolved nutrients and oxygen played important roles in N2O distribution. Although we did not observe a significant N2O trend during 2005–2017, a decrease in N2O concentration and emission seems likely in future.
Eric J. Morgan, Jost V. Lavric, Damian L. Arévalo-Martínez, Hermann W. Bange, Tobias Steinhoff, Thomas Seifert, and Martin Heimann
Biogeosciences, 16, 4065–4084, https://doi.org/10.5194/bg-16-4065-2019, https://doi.org/10.5194/bg-16-4065-2019, 2019
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Taking a 2-year atmospheric record of atmospheric oxygen and the greenhouse gases N2O, CO2, and CH4, made at a coastal site in the Namib Desert, we estimated the fluxes of these gases from upwelling events in the northern Benguela Current region. We compared these results with flux measurements made on a research vessel in the study area at the same time and found that the two approaches agreed well. The study region was a source of N2O, CO2, and CH4 to the atmosphere during upwelling events.
Tim Fischer, Annette Kock, Damian L. Arévalo-Martínez, Marcus Dengler, Peter Brandt, and Hermann W. Bange
Biogeosciences, 16, 2307–2328, https://doi.org/10.5194/bg-16-2307-2019, https://doi.org/10.5194/bg-16-2307-2019, 2019
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We investigated air–sea gas exchange in oceanic upwelling regions for the case of nitrous oxide off Peru. In this region, routine concentration measurements from ships at 5 m or 10 m depth prove to overestimate surface (bulk) concentration. Thus, standard estimates of gas exchange will show systematic error. This is due to very shallow stratified layers that inhibit exchange between surface water and waters below and can exist for several days. Maximum bias occurs in moderate wind conditions.
Qixing Ji, Mark A. Altabet, Hermann W. Bange, Michelle I. Graco, Xiao Ma, Damian L. Arévalo-Martínez, and Damian S. Grundle
Biogeosciences, 16, 2079–2093, https://doi.org/10.5194/bg-16-2079-2019, https://doi.org/10.5194/bg-16-2079-2019, 2019
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A strong El Niño event occurred in the Peruvian coastal region in 2015–2016, during which higher sea surface temperatures co-occurred with significantly lower sea-to-air fluxes of nitrous oxide, an important greenhouse gas and ozone depletion agent. Stratified water column during El Niño retained a larger amount of nitrous oxide that was produced via multiple microbial pathways; and intense nitrous oxide effluxes could occur when normal upwelling is resumed after El Niño.
Jan-Lukas Menzel Barraqueta, Jessica K. Klar, Martha Gledhill, Christian Schlosser, Rachel Shelley, Hélène F. Planquette, Bernhard Wenzel, Geraldine Sarthou, and Eric P. Achterberg
Biogeosciences, 16, 1525–1542, https://doi.org/10.5194/bg-16-1525-2019, https://doi.org/10.5194/bg-16-1525-2019, 2019
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We used surface water dissolved aluminium concentrations collected in four different GEOTRACES cruises to determine atmospheric deposition fluxes to the ocean. We calculate atmospheric deposition fluxes for largely under-sampled regions of the Atlantic Ocean and thus provide new constraints for models of atmospheric deposition. The use of the MADCOW model is of major importance as dissolved aluminium is analysed within the GEOTRACES project at high spatial resolution.
Géraldine Sarthou, Pascale Lherminier, Eric P. Achterberg, Fernando Alonso-Pérez, Eva Bucciarelli, Julia Boutorh, Vincent Bouvier, Edward A. Boyle, Pierre Branellec, Lidia I. Carracedo, Nuria Casacuberta, Maxi Castrillejo, Marie Cheize, Leonardo Contreira Pereira, Daniel Cossa, Nathalie Daniault, Emmanuel De Saint-Léger, Frank Dehairs, Feifei Deng, Floriane Desprez de Gésincourt, Jérémy Devesa, Lorna Foliot, Debany Fonseca-Batista, Morgane Gallinari, Maribel I. García-Ibáñez, Arthur Gourain, Emilie Grossteffan, Michel Hamon, Lars Eric Heimbürger, Gideon M. Henderson, Catherine Jeandel, Catherine Kermabon, François Lacan, Philippe Le Bot, Manon Le Goff, Emilie Le Roy, Alison Lefèbvre, Stéphane Leizour, Nolwenn Lemaitre, Pere Masqué, Olivier Ménage, Jan-Lukas Menzel Barraqueta, Herlé Mercier, Fabien Perault, Fiz F. Pérez, Hélène F. Planquette, Frédéric Planchon, Arnout Roukaerts, Virginie Sanial, Raphaëlle Sauzède, Catherine Schmechtig, Rachel U. Shelley, Gillian Stewart, Jill N. Sutton, Yi Tang, Nadine Tisnérat-Laborde, Manon Tonnard, Paul Tréguer, Pieter van Beek, Cheryl M. Zurbrick, and Patricia Zunino
Biogeosciences, 15, 7097–7109, https://doi.org/10.5194/bg-15-7097-2018, https://doi.org/10.5194/bg-15-7097-2018, 2018
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The GEOVIDE cruise (GEOTRACES Section GA01) was conducted in the North Atlantic Ocean and Labrador Sea in May–June 2014. In this special issue, results from GEOVIDE, including physical oceanography and trace element and isotope cyclings, are presented among 17 articles. Here, the scientific context, project objectives, and scientific strategy of GEOVIDE are provided, along with an overview of the main results from the articles published in the special issue.
Qixing Ji, Claudia Frey, Xin Sun, Melanie Jackson, Yea-Shine Lee, Amal Jayakumar, Jeffrey C. Cornwell, and Bess B. Ward
Biogeosciences, 15, 6127–6138, https://doi.org/10.5194/bg-15-6127-2018, https://doi.org/10.5194/bg-15-6127-2018, 2018
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Nitrous oxide (N2O) is a strong greenhouse gas and ozone-depletion agent. Intense N2O effluxes had been observed from nutrient-rich estuaries with human impacts, such as the Chesapeake Bay. We report that increased nitrogen availability and low-oxygen conditions stimulate N2O production. Thus, controlling the nutrient input to the bay will decrease nitrogen availability and alleviate eutrophication, leading to water column reoxygenation, and subsequently will mitigate N2O emission.
Samuel T. Wilson, Hermann W. Bange, Damian L. Arévalo-Martínez, Jonathan Barnes, Alberto V. Borges, Ian Brown, John L. Bullister, Macarena Burgos, David W. Capelle, Michael Casso, Mercedes de la Paz, Laura Farías, Lindsay Fenwick, Sara Ferrón, Gerardo Garcia, Michael Glockzin, David M. Karl, Annette Kock, Sarah Laperriere, Cliff S. Law, Cara C. Manning, Andrew Marriner, Jukka-Pekka Myllykangas, John W. Pohlman, Andrew P. Rees, Alyson E. Santoro, Philippe D. Tortell, Robert C. Upstill-Goddard, David P. Wisegarver, Gui-Ling Zhang, and Gregor Rehder
Biogeosciences, 15, 5891–5907, https://doi.org/10.5194/bg-15-5891-2018, https://doi.org/10.5194/bg-15-5891-2018, 2018
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To determine the variability between independent measurements of dissolved methane and nitrous oxide, seawater samples were analyzed by multiple laboratories. The results revealed the influences of the different parts of the analytical process, from the initial sample collection to the calculation of the final concentrations. Recommendations are made to improve dissolved methane and nitrous oxide measurements to help preclude future analytical discrepancies between laboratories.
Jan-Lukas Menzel Barraqueta, Christian Schlosser, Hélène Planquette, Arthur Gourain, Marie Cheize, Julia Boutorh, Rachel Shelley, Leonardo Contreira Pereira, Martha Gledhill, Mark J. Hopwood, François Lacan, Pascale Lherminier, Geraldine Sarthou, and Eric P. Achterberg
Biogeosciences, 15, 5271–5286, https://doi.org/10.5194/bg-15-5271-2018, https://doi.org/10.5194/bg-15-5271-2018, 2018
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In the North Atlantic and Labrador Sea, low aerosol deposition and enhanced primary productivity control the dissolved aluminium (dAl) surface distribution, while remineralization of particles seems to control the distribution at depth. DAl in the ocean allows us to indirectly quantify the amount of dust deposited to a given region for a given period. Hence, the study of its distribution, cycling, sources, and sinks is of major importance to improve aerosol deposition models and climate models.
Christian Schlosser, Katrin Schmidt, Alfred Aquilina, William B. Homoky, Maxi Castrillejo, Rachel A. Mills, Matthew D. Patey, Sophie Fielding, Angus Atkinson, and Eric P. Achterberg
Biogeosciences, 15, 4973–4993, https://doi.org/10.5194/bg-15-4973-2018, https://doi.org/10.5194/bg-15-4973-2018, 2018
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Iron (Fe) emanating from the South Georgia shelf system fuels large phytoplankton blooms downstream of the island. However, the actual supply mechanisms of Fe are unclear. We found that shelf-sediment-derived iron and iron released from Antarctic krill control the Fe distribution in the shelf waters around South Georgia. The majority of the Fe appears to be derived from recycling of Fe-enriched particles that are transported with the water masses into the bloom region.
Johanna Maltby, Lea Steinle, Carolin R. Löscher, Hermann W. Bange, Martin A. Fischer, Mark Schmidt, and Tina Treude
Biogeosciences, 15, 137–157, https://doi.org/10.5194/bg-15-137-2018, https://doi.org/10.5194/bg-15-137-2018, 2018
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The activity and environmental controls of methanogenesis (MG) within the sulfate-reducing zone (0–30 cm below the seafloor) were investigated in organic-rich sediments of the seasonally hypoxic Eckernförde Bay, SW Baltic Sea. MG activity was mostly linked to non-competitive substrates. The major controls identified were organic matter availability, C / N, temperature, and O2 in the water column, revealing higher rates in warm, stratified, hypoxic seasons compared to colder, oxygenated seasons.
Eike E. Köhn, Sören Thomsen, Damian L. Arévalo-Martínez, and Torsten Kanzow
Ocean Sci., 13, 1017–1033, https://doi.org/10.5194/os-13-1017-2017, https://doi.org/10.5194/os-13-1017-2017, 2017
Chun-Ying Liu, Wei-Hua Feng, Ye Tian, Gui-Peng Yang, Pei-Feng Li, and Hermann W. Bange
Ocean Sci., 13, 623–632, https://doi.org/10.5194/os-13-623-2017, https://doi.org/10.5194/os-13-623-2017, 2017
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We developed a new method for the determination of dissolved nitric oxide (NO) in discrete seawater samples based on the combination of a purge-and-trap setup and a fluorometric detection of NO. With this method we have a reliable and comparably easy to use method to measure oceanic NO surface concentrations, which can be used to decipher both its temporal and spatial distributions as well as its biogeochemical pathways in the oceans.
Johannes Karstensen, Florian Schütte, Alice Pietri, Gerd Krahmann, Björn Fiedler, Damian Grundle, Helena Hauss, Arne Körtzinger, Carolin R. Löscher, Pierre Testor, Nuno Vieira, and Martin Visbeck
Biogeosciences, 14, 2167–2181, https://doi.org/10.5194/bg-14-2167-2017, https://doi.org/10.5194/bg-14-2167-2017, 2017
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High-resolution observational data from underwater gliders and ships are used to investigate drivers and pathways of nutrient upwelling in high-productive whirling ecosystems (eddies). The data suggest that the upwelling is created by the interaction of wind-induced internal waves with the local rotation of the eddy. Because of differences in nutrient and oxygen pathways, a low-oxygen core is established at shallow depth in the high-productive eddies.
Lea Steinle, Johanna Maltby, Tina Treude, Annette Kock, Hermann W. Bange, Nadine Engbersen, Jakob Zopfi, Moritz F. Lehmann, and Helge Niemann
Biogeosciences, 14, 1631–1645, https://doi.org/10.5194/bg-14-1631-2017, https://doi.org/10.5194/bg-14-1631-2017, 2017
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Large amounts of methane are produced in anoxic, coastal sediments, from which it can seep into the overlying water column. Aerobic oxidation of methane (MOx) mediated by methanotrophic bacteria is an important sink for methane before its evasion to the atmosphere. In a 2-year seasonal study, we investigated the spatio-temporal variability of MOx in a seasonally hypoxic coastal inlet using radiotracer-based methods. In experiments, we assessed the effect of variable oxygen concentrations on MOx.
Sinikka T. Lennartz, Christa A. Marandino, Marc von Hobe, Pau Cortes, Birgit Quack, Rafel Simo, Dennis Booge, Andrea Pozzer, Tobias Steinhoff, Damian L. Arevalo-Martinez, Corinna Kloss, Astrid Bracher, Rüdiger Röttgers, Elliot Atlas, and Kirstin Krüger
Atmos. Chem. Phys., 17, 385–402, https://doi.org/10.5194/acp-17-385-2017, https://doi.org/10.5194/acp-17-385-2017, 2017
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We present new sea surface and marine boundary layer measurements of carbonyl sulfide, the most abundant sulfur gas in the atmosphere, and calculate an oceanic emission estimate. Our results imply that oceanic emissions are very unlikely to account for the missing source in the atmospheric budget that is currently discussed for OCS.
Thomas Hornick, Lennart T. Bach, Katharine J. Crawfurd, Kristian Spilling, Eric P. Achterberg, Jason N. Woodhouse, Kai G. Schulz, Corina P. D. Brussaard, Ulf Riebesell, and Hans-Peter Grossart
Biogeosciences, 14, 1–15, https://doi.org/10.5194/bg-14-1-2017, https://doi.org/10.5194/bg-14-1-2017, 2017
Kristian Spilling, Kai G. Schulz, Allanah J. Paul, Tim Boxhammer, Eric P. Achterberg, Thomas Hornick, Silke Lischka, Annegret Stuhr, Rafael Bermúdez, Jan Czerny, Kate Crawfurd, Corina P. D. Brussaard, Hans-Peter Grossart, and Ulf Riebesell
Biogeosciences, 13, 6081–6093, https://doi.org/10.5194/bg-13-6081-2016, https://doi.org/10.5194/bg-13-6081-2016, 2016
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We performed an experiment in the Baltic Sea in order to investigate the consequences of the increasing CO2 levels on biological processes in the free water mass. There was more accumulation of organic carbon at high CO2 levels. Surprisingly, this was caused by reduced loss processes (respiration and bacterial production) in a high-CO2 environment, and not by increased photosynthetic fixation of CO2. Our carbon budget can be used to better disentangle the effects of ocean acidification.
Björn Fiedler, Damian S. Grundle, Florian Schütte, Johannes Karstensen, Carolin R. Löscher, Helena Hauss, Hannes Wagner, Alexandra Loginova, Rainer Kiko, Péricles Silva, Toste Tanhua, and Arne Körtzinger
Biogeosciences, 13, 5633–5647, https://doi.org/10.5194/bg-13-5633-2016, https://doi.org/10.5194/bg-13-5633-2016, 2016
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Oxygen-depleted mesoscale features in the open eastern tropical North Atlantic, which are formed in the Mauritanian upwelling region, were discovered recently. This study examines biogeochemical structure and magnitudes of related processes within these isolated water masses. We found very low oxygen concentrations and strongly enhanced acidity at near-surface depth. Oxygen utilization and downward carbon export were found to exceed known values for this ocean region.
Jessica Gier, Stefan Sommer, Carolin R. Löscher, Andrew W. Dale, Ruth A. Schmitz, and Tina Treude
Biogeosciences, 13, 4065–4080, https://doi.org/10.5194/bg-13-4065-2016, https://doi.org/10.5194/bg-13-4065-2016, 2016
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Benthic nitrogen fixation and sulfate reduction were investigated in the Peruvian oxygen minimum zone. The data suggest a coupling of both activities to a large extent, but that also sulfide and organic matter availability are controlling the benthic diazotrophy in this area. The molecular analysis confirms the presence of heterotrophic diazotrophs. This work improves our understanding of N cycling in OMZ sediments and the understanding of N sources in the marine environment.
Allanah J. Paul, Eric P. Achterberg, Lennart T. Bach, Tim Boxhammer, Jan Czerny, Mathias Haunost, Kai-Georg Schulz, Annegret Stuhr, and Ulf Riebesell
Biogeosciences, 13, 3901–3913, https://doi.org/10.5194/bg-13-3901-2016, https://doi.org/10.5194/bg-13-3901-2016, 2016
Lothar Stramma, Tim Fischer, Damian S. Grundle, Gerd Krahmann, Hermann W. Bange, and Christa A. Marandino
Ocean Sci., 12, 861–873, https://doi.org/10.5194/os-12-861-2016, https://doi.org/10.5194/os-12-861-2016, 2016
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Results from a research cruise on R/V Sonne to the eastern tropical Pacific in October 2015 during the 2015–2016 El Niño show the transition of current, hydrographic, and nutrient conditions to El Niño conditions in the eastern tropical Pacific in October 2015. Although in early 2015 the El Niño was strong and in October 2015 showed a clear El Niño influence on the EUC, in the eastern tropical Pacific the measurements only showed developing El Niño water mass distributions.
Carolin R. Löscher, Hermann W. Bange, Ruth A. Schmitz, Cameron M. Callbeck, Anja Engel, Helena Hauss, Torsten Kanzow, Rainer Kiko, Gaute Lavik, Alexandra Loginova, Frank Melzner, Judith Meyer, Sven C. Neulinger, Markus Pahlow, Ulf Riebesell, Harald Schunck, Sören Thomsen, and Hannes Wagner
Biogeosciences, 13, 3585–3606, https://doi.org/10.5194/bg-13-3585-2016, https://doi.org/10.5194/bg-13-3585-2016, 2016
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The ocean loses oxygen due to climate change. Addressing this issue in tropical ocean regions (off Peru and Mauritania), we aimed to understand the effects of oxygen depletion on various aspects of marine biogeochemistry, including primary production and export production, the nitrogen cycle, greenhouse gas production, organic matter fluxes and remineralization, and the role of zooplankton and viruses.
Matthew P. Humphreys, Florence M. Greatrix, Eithne Tynan, Eric P. Achterberg, Alex M. Griffiths, Claudia H. Fry, Rebecca Garley, Alison McDonald, and Adrian J. Boyce
Earth Syst. Sci. Data, 8, 221–233, https://doi.org/10.5194/essd-8-221-2016, https://doi.org/10.5194/essd-8-221-2016, 2016
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This paper reports the stable isotope composition of dissolved inorganic carbon in seawater for a transect from west to east across the North Atlantic Ocean. The results can be used to study oceanic uptake of anthropogenic carbon dioxide, and also to investigate the natural biological carbon pump. We also provide stable DIC isotope results for two batches of Dickson seawater CRMs to enable intercomparisons with other studies.
Monika Nausch, Lennart Thomas Bach, Jan Czerny, Josephine Goldstein, Hans-Peter Grossart, Dana Hellemann, Thomas Hornick, Eric Pieter Achterberg, Kai-Georg Schulz, and Ulf Riebesell
Biogeosciences, 13, 3035–3050, https://doi.org/10.5194/bg-13-3035-2016, https://doi.org/10.5194/bg-13-3035-2016, 2016
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Studies investigating the effect of increasing CO2 levels on the phosphorus cycle in natural waters are lacking although phosphorus often controls phytoplankton development in aquatic systems. The aim of our study was to analyse effects of elevated CO2 levels on phosphorus pool sizes and uptake. Therefore, we conducted a CO2-manipulation mesocosm experiment in the Storfjärden (western Gulf of Finland, Baltic Sea) in summer 2012. We compared the phosphorus dynamics in different mesocosm treatment
Carolin R. Löscher, Annie Bourbonnais, Julien Dekaezemacker, Chawalit N. Charoenpong, Mark A. Altabet, Hermann W. Bange, Rena Czeschel, Chris Hoffmann, and Ruth Schmitz
Biogeosciences, 13, 2889–2899, https://doi.org/10.5194/bg-13-2889-2016, https://doi.org/10.5194/bg-13-2889-2016, 2016
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The ocean is full of eddies and they play a key role for ocean biogeochemistry. In order to understand dinitrogen (N2) fixation, one major control of oceanic primary production, we investigated three eddies in the eastern tropical South Pacific off Peru. We conducted the first detailed survey and found increased N2 fixation in the oxygen-depleted cores of anticyclonic mode water eddies. Taken together, we could – for the first time – show that eddies play an important role in N2 fixation off Peru.
Denise Müller, Hermann W. Bange, Thorsten Warneke, Tim Rixen, Moritz Müller, Aazani Mujahid, and Justus Notholt
Biogeosciences, 13, 2415–2428, https://doi.org/10.5194/bg-13-2415-2016, https://doi.org/10.5194/bg-13-2415-2016, 2016
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Estuaries act as sources of the greenhouse gases nitrous oxide (N2O) and methane (CH4) to the atmosphere. We provide first measurements of N2O and CH4 in two estuaries in north-western Borneo, a region which is dominated by peatlands. We show that N2O and CH4 concentrations in these estuaries are moderate despite high organic carbon loads, that nutrient enhancement does not lead to enhanced N2O emissions, and that the wet season dominates the variability of the emissions in these systems.
Helena Hauss, Svenja Christiansen, Florian Schütte, Rainer Kiko, Miryam Edvam Lima, Elizandro Rodrigues, Johannes Karstensen, Carolin R. Löscher, Arne Körtzinger, and Björn Fiedler
Biogeosciences, 13, 1977–1989, https://doi.org/10.5194/bg-13-1977-2016, https://doi.org/10.5194/bg-13-1977-2016, 2016
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In a low-oxygen eddy in the tropical Atlantic, total zooplankton biomass was increased. Larger plankton avoided the oxygen minimum zone (OMZ, < 20 µmol O2 kg−1). We identified four strategies by different plankton groups: (i) shallow OMZ avoidance and compression at surface, (ii) migration to shallow OMZ core during daytime, migration to surface at nighttime, (iii) residing in shallow OMZ day and night and (iv) migration through the shallow OMZ from oxygenated depths to surface and back.
Happy Hu, Annie Bourbonnais, Jennifer Larkum, Hermann W. Bange, and Mark A. Altabet
Biogeosciences, 13, 1453–1468, https://doi.org/10.5194/bg-13-1453-2016, https://doi.org/10.5194/bg-13-1453-2016, 2016
Ulrike Lomnitz, Stefan Sommer, Andrew W. Dale, Carolin R. Löscher, Anna Noffke, Klaus Wallmann, and Christian Hensen
Biogeosciences, 13, 1367–1386, https://doi.org/10.5194/bg-13-1367-2016, https://doi.org/10.5194/bg-13-1367-2016, 2016
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The study presents a P budget including the P input from the water column, the P burial in the sediments, as well as the P release from the sediments. We found that the P input could not maintain the P release rates. Consideration of other P sources, e.g., terrigenous P and P released from the dissolution of Fe oxyhydroxides, showed that none of these can account for the missing P. Thus, it is likely that abundant sulfide-oxidizing bacteria release the missing P during our measurement period.
Damian L. Arévalo-Martínez, Annette Kock, Carolin R. Löscher, Ruth A. Schmitz, Lothar Stramma, and Hermann W. Bange
Biogeosciences, 13, 1105–1118, https://doi.org/10.5194/bg-13-1105-2016, https://doi.org/10.5194/bg-13-1105-2016, 2016
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We present the first measurements of N2O across three mesoscale eddies in the eastern tropical South Pacific. Eddie's vertical structure, offshore transport, properties during its formation and near-surface primary production determined the N2O distribution. Substantial depletion of N2O within the core of anticyclonic eddies suggests that although these are transient features, N-loss processes within their centres can lead to an enhanced N2O sink which is not accounted for in marine N2O budgets.
A. Kock, D. L. Arévalo-Martínez, C. R. Löscher, and H. W. Bange
Biogeosciences, 13, 827–840, https://doi.org/10.5194/bg-13-827-2016, https://doi.org/10.5194/bg-13-827-2016, 2016
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We measured the nitrous oxide (N2O) distribution in the water column in the oxygen minimum zone off Peru, an area with extremely high N2O emissions. Our data show very variable and often very high N2O concentrations in the water column at the coast, which lead to high N2O emissions when these waters are brought to the surface. The very high N2O production off Peru may be caused by high nutrient turnover rates together with rapid changes in the oxygen concentrations.
A. R. Baker, M. Thomas, H. W. Bange, and E. Plasencia Sánchez
Biogeosciences, 13, 817–825, https://doi.org/10.5194/bg-13-817-2016, https://doi.org/10.5194/bg-13-817-2016, 2016
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Concentrations of major ions and trace metals were measured in aerosols off the coast of Peru in December 2012. A few trace metals (iron, copper, nickel, and cobalt) had anomalously high concentrations, which may be associated with industrial metal smelting activities in the region. The atmosphere appears to supply an excess of iron (relative to atmospheric nitrogen supply) to the phytoplankton community of the Peruvian upwelling system.
J. Meyer, C. R. Löscher, S. C. Neulinger, A. F. Reichel, A. Loginova, C. Borchard, R. A. Schmitz, H. Hauss, R. Kiko, and U. Riebesell
Biogeosciences, 13, 781–794, https://doi.org/10.5194/bg-13-781-2016, https://doi.org/10.5194/bg-13-781-2016, 2016
D. Müller, T. Warneke, T. Rixen, M. Müller, A. Mujahid, H. W. Bange, and J. Notholt
Biogeosciences, 13, 691–705, https://doi.org/10.5194/bg-13-691-2016, https://doi.org/10.5194/bg-13-691-2016, 2016
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We studied organic carbon and the dissolved greenhouse gases carbon dioxide (CO2) and carbon monoxide (CO) in two estuaries in Sarawak, Malaysia, whose coast is covered by carbon-rich peatlands. The estuaries received terrestrial organic carbon from peat-draining tributaries. A large fraction was converted to CO2 and a minor fraction to CO. Both gases were released to the atmosphere. This shows how these estuaries function as efficient filters between land and ocean in this important region.
C. R. Löscher, M. A. Fischer, S. C. Neulinger, B. Fiedler, M. Philippi, F. Schütte, A. Singh, H. Hauss, J. Karstensen, A. Körtzinger, S. Künzel, and R. A. Schmitz
Biogeosciences, 12, 7467–7482, https://doi.org/10.5194/bg-12-7467-2015, https://doi.org/10.5194/bg-12-7467-2015, 2015
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The waters of the tropical Atlantic Open Ocean usually contain comparably high concentrations of oxygen. Now, it became clear that there are watermasses related to eddies that are nearly anoxic. We surveyed one of those eddies and found a biosphere that largely differed from the usual biosphere present in this area with a specific community responsible for primary production and for degradation processes. Further, we found the very first indication for active nitrogen loss in the open Atlantic.
H. E. Lutterbeck and H. W. Bange
Ocean Sci., 11, 937–946, https://doi.org/10.5194/os-11-937-2015, https://doi.org/10.5194/os-11-937-2015, 2015
A. J. Paul, L. T. Bach, K.-G. Schulz, T. Boxhammer, J. Czerny, E. P. Achterberg, D. Hellemann, Y. Trense, M. Nausch, M. Sswat, and U. Riebesell
Biogeosciences, 12, 6181–6203, https://doi.org/10.5194/bg-12-6181-2015, https://doi.org/10.5194/bg-12-6181-2015, 2015
Y. Zhang, N. Mahowald, R. A. Scanza, E. Journet, K. Desboeufs, S. Albani, J. F. Kok, G. Zhuang, Y. Chen, D. D. Cohen, A. Paytan, M. D. Patey, E. P. Achterberg, J. P. Engelbrecht, and K. W. Fomba
Biogeosciences, 12, 5771–5792, https://doi.org/10.5194/bg-12-5771-2015, https://doi.org/10.5194/bg-12-5771-2015, 2015
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A new technique to determine a size-fractionated global soil elemental emission inventory based on a global soil and mineralogical data set is introduced. Spatial variability of mineral dust elemental fractions (8 elements, e.g., Ca, Fe, Al) is identified on a global scale, particularly for Ca. The Ca/Al ratio ranged between 0.1 and 5.0 and is confirmed as an indicator of dust source regions by a global dust model. Total and soluble dust element fluxes into different ocean basins are estimated.
M. P. Humphreys, E. P. Achterberg, A. M. Griffiths, A. McDonald, and A. J. Boyce
Earth Syst. Sci. Data, 7, 127–135, https://doi.org/10.5194/essd-7-127-2015, https://doi.org/10.5194/essd-7-127-2015, 2015
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We present measurements of the stable carbon isotope composition of seawater dissolved inorganic carbon. The samples were collected during two research cruises in boreal summer 2012 in the northeastern Atlantic and Nordic Seas. The results can be used to investigate the marine carbon cycle, providing information about biological productivity and oceanic uptake of anthropogenic carbon dioxide.
M.-S. Sun, G.-L. Zhang, X.-P. Cao, X.-Y. Mao, J. Li, and W.-W. Ye
Biogeosciences Discuss., https://doi.org/10.5194/bgd-12-7017-2015, https://doi.org/10.5194/bgd-12-7017-2015, 2015
Revised manuscript not accepted
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Obvious seasonal variations of the distribution and emission of methane in the ECS and YS were reported based on data collected during five cruises in 2011. A box model was used to calculate the methane budget in the ECS, identify the main sources and sinks of dissolved methane in this area, and estimate the contribution of different sources to total methane quantitatively. It indicated that the most important source of methane in the ECS was in situ production in the water column.
P. Brandt, H. W. Bange, D. Banyte, M. Dengler, S.-H. Didwischus, T. Fischer, R. J. Greatbatch, J. Hahn, T. Kanzow, J. Karstensen, A. Körtzinger, G. Krahmann, S. Schmidtko, L. Stramma, T. Tanhua, and M. Visbeck
Biogeosciences, 12, 489–512, https://doi.org/10.5194/bg-12-489-2015, https://doi.org/10.5194/bg-12-489-2015, 2015
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Our observational study looks at the structure of the eastern tropical North Atlantic (ETNA) oxygen minimum zone (OMZ) in comparison with the less-ventilated, eastern tropical South Pacific OMZ. We quantify the OMZ’s oxygen budget composed of consumption, advection, lateral and vertical mixing. Substantial oxygen variability is observed on interannual to multidecadal timescales. The deoxygenation of the ETNA OMZ during the last decades represents a substantial imbalance of the oxygen budget.
S. T. Lennartz, A. Lehmann, J. Herrford, F. Malien, H.-P. Hansen, H. Biester, and H. W. Bange
Biogeosciences, 11, 6323–6339, https://doi.org/10.5194/bg-11-6323-2014, https://doi.org/10.5194/bg-11-6323-2014, 2014
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A time series of nine oceanic parameters from the coastal time series station Boknis Eck (BE, southwestern Baltic Sea) in the period of 1957-2013 is analysed with respect to seasonal cycles and long-term trends. Most striking was a paradoxical decreasing trend in oxygen with a simultaneous decline in eutrophication. Possible reasons for this paradox, e.g. processes related to warming temperatures such as increased decomposition of organic matter or altered ventilation, are discussed.
J. Friedrich, F. Janssen, D. Aleynik, H. W. Bange, N. Boltacheva, M. N. Çagatay, A. W. Dale, G. Etiope, Z. Erdem, M. Geraga, A. Gilli, M. T. Gomoiu, P. O. J. Hall, D. Hansson, Y. He, M. Holtappels, M. K. Kirf, M. Kononets, S. Konovalov, A. Lichtschlag, D. M. Livingstone, G. Marinaro, S. Mazlumyan, S. Naeher, R. P. North, G. Papatheodorou, O. Pfannkuche, R. Prien, G. Rehder, C. J. Schubert, T. Soltwedel, S. Sommer, H. Stahl, E. V. Stanev, A. Teaca, A. Tengberg, C. Waldmann, B. Wehrli, and F. Wenzhöfer
Biogeosciences, 11, 1215–1259, https://doi.org/10.5194/bg-11-1215-2014, https://doi.org/10.5194/bg-11-1215-2014, 2014
D. L. Arévalo-Martínez, M. Beyer, M. Krumbholz, I. Piller, A. Kock, T. Steinhoff, A. Körtzinger, and H. W. Bange
Ocean Sci., 9, 1071–1087, https://doi.org/10.5194/os-9-1071-2013, https://doi.org/10.5194/os-9-1071-2013, 2013
L. Stramma, H. W. Bange, R. Czeschel, A. Lorenzo, and M. Frank
Biogeosciences, 10, 7293–7306, https://doi.org/10.5194/bg-10-7293-2013, https://doi.org/10.5194/bg-10-7293-2013, 2013
I.-N. Kim, K. Lee, H. W. Bange, and A. M. Macdonald
Biogeosciences, 10, 6783–6792, https://doi.org/10.5194/bg-10-6783-2013, https://doi.org/10.5194/bg-10-6783-2013, 2013
C. A. Marandino, S. Tegtmeier, K. Krüger, C. Zindler, E. L. Atlas, F. Moore, and H. W. Bange
Atmos. Chem. Phys., 13, 8427–8437, https://doi.org/10.5194/acp-13-8427-2013, https://doi.org/10.5194/acp-13-8427-2013, 2013
K. Laß, H. W. Bange, and G. Friedrichs
Biogeosciences, 10, 5325–5334, https://doi.org/10.5194/bg-10-5325-2013, https://doi.org/10.5194/bg-10-5325-2013, 2013
C. Zindler, A. Bracher, C. A. Marandino, B. Taylor, E. Torrecilla, A. Kock, and H. W. Bange
Biogeosciences, 10, 3297–3311, https://doi.org/10.5194/bg-10-3297-2013, https://doi.org/10.5194/bg-10-3297-2013, 2013
V. J. Bertics, C. R. Löscher, I. Salonen, A. W. Dale, J. Gier, R. A. Schmitz, and T. Treude
Biogeosciences, 10, 1243–1258, https://doi.org/10.5194/bg-10-1243-2013, https://doi.org/10.5194/bg-10-1243-2013, 2013
L. M. Zamora, A. Oschlies, H. W. Bange, K. B. Huebert, J. D. Craig, A. Kock, and C. R. Löscher
Biogeosciences, 9, 5007–5022, https://doi.org/10.5194/bg-9-5007-2012, https://doi.org/10.5194/bg-9-5007-2012, 2012
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The additionality problem of ocean alkalinity enhancement
Short-term variation in pH in seawaters around coastal areas of Japan: characteristics and forcings
Dissolved Nitric Oxide in the Lower Elbe Estuary and the Hamburg Port Area
Revisiting the applicability and constraints of molybdenum- and uranium-based paleo redox proxies: comparing two contrasting sill fjords
Influence of a small submarine canyon on biogenic matter export flux in the lower St. Lawrence Estuary, eastern Canada
Single-celled bioturbators: benthic foraminifera mediate oxygen penetration and prokaryotic diversity in intertidal sediment
Assessing impacts of coastal warming, acidification, and deoxygenation on Pacific oyster (Crassostrea gigas) farming: a case study in the Hinase area, Okayama Prefecture, and Shizugawa Bay, Miyagi Prefecture, Japan
The estimates of carbon sequestration potential in an expanding Arctic fjord affected by dark plumes of glacial meltwater (Hornsund, Svalbard)
Multiple nitrogen sources for primary production inferred from δ13C and δ15N in the southern Sea of Japan
Influence of manganese cycling on alkalinity in the redox stratified water column of Chesapeake Bay
Estuarine flocculation dynamics of organic carbon and metals from boreal acid sulfate soils
Drivers of particle sinking velocities in the Peruvian upwelling system
Impacts and uncertainties of climate-induced changes in watershed inputs on estuarine hypoxia
Considerations for hypothetical carbon dioxide removal via alkalinity addition in the Amazon River watershed
High metabolism and periodic hypoxia associated with drifting macrophyte detritus in the shallow subtidal Baltic Sea
Production and accumulation of reef framework by calcifying corals and macroalgae on a remote Indian Ocean cay
Zooplankton community succession and trophic links during a mesocosm experiment in the coastal upwelling off Callao Bay (Peru)
Temporal and spatial evolution of bottom-water hypoxia in the St Lawrence estuarine system
Significant nutrient consumption in the dark subsurface layer during a diatom bloom: a case study on Funka Bay, Hokkaido, Japan
Contrasts in dissolved, particulate, and sedimentary organic carbon from the Kolyma River to the East Siberian Shelf
Sediment quality assessment in an industrialized Greek coastal marine area (western Saronikos Gulf)
Limits and CO2 equilibration of near-coast alkalinity enhancement
Role of phosphorus in the seasonal deoxygenation of the East China Sea shelf
Interannual variability of the initiation of the phytoplankton growing period in two French coastal ecosystems
Spatio-temporal distribution, photoreactivity and environmental control of dissolved organic matter in the sea-surface microlayer of the eastern marginal seas of China
Metabolic alkalinity release from large port facilities (Hamburg, Germany) and impact on coastal carbon storage
A Numerical reassessment of the Gulf of Mexico carbon system in connection with the Mississippi River and global ocean
Amanda Y. L. Cheong, Kogila Vani Annammala, Ee Ling Yong, Yongli Zhou, Robert S. Nichols, and Patrick Martin
Biogeosciences, 21, 2955–2971, https://doi.org/10.5194/bg-21-2955-2024, https://doi.org/10.5194/bg-21-2955-2024, 2024
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We measured nutrients and dissolved organic matter for 1 year in a eutrophic tropical estuary to understand their sources and cycling. Our data show that the dissolved organic matter originates partly from land and partly from microbial processes in the water. Internal recycling is likely important for maintaining high nutrient concentrations, and we found that there is often excess nitrogen compared to silicon and phosphorus. Our data help to explain how eutrophication persists in this system.
Aaron Ferderer, Kai G. Schulz, Ulf Riebesell, Kirralee G. Baker, Zanna Chase, and Lennart T. Bach
Biogeosciences, 21, 2777–2794, https://doi.org/10.5194/bg-21-2777-2024, https://doi.org/10.5194/bg-21-2777-2024, 2024
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Ocean alkalinity enhancement (OAE) is a promising method of atmospheric carbon removal; however, its ecological impacts remain largely unknown. We assessed the effects of simulated silicate- and calcium-based mineral OAE on diatom silicification. We found that increased silicate concentrations from silicate-based OAE increased diatom silicification. In contrast, the enhancement of alkalinity had no effect on community silicification and minimal effects on the silicification of different genera.
David González-Santana, María Segovia, Melchor González-Dávila, Librada Ramírez, Aridane G. González, Leonardo J. Pozzo-Pirotta, Veronica Arnone, Victor Vázquez, Ulf Riebesell, and J. Magdalena Santana-Casiano
Biogeosciences, 21, 2705–2715, https://doi.org/10.5194/bg-21-2705-2024, https://doi.org/10.5194/bg-21-2705-2024, 2024
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In a recent experiment off the coast of Gran Canaria (Spain), scientists explored a method called ocean alkalinization enhancement (OAE), where carbonate minerals were added to seawater. This process changed the levels of certain ions in the water, affecting its pH and buffering capacity. The researchers were particularly interested in how this could impact the levels of essential trace metals in the water.
Lucas Porz, Wenyan Zhang, Nils Christiansen, Jan Kossack, Ute Daewel, and Corinna Schrum
Biogeosciences, 21, 2547–2570, https://doi.org/10.5194/bg-21-2547-2024, https://doi.org/10.5194/bg-21-2547-2024, 2024
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Seafloor sediments store a large amount of carbon, helping to naturally regulate Earth's climate. If disturbed, some sediment particles can turn into CO2, but this effect is not well understood. Using computer simulations, we found that bottom-contacting fishing gears release about 1 million tons of CO2 per year in the North Sea, one of the most heavily fished regions globally. We show how protecting certain areas could reduce these emissions while also benefitting seafloor-living animals.
Jiaying A. Guo, Robert F. Strzepek, Kerrie M. Swadling, Ashley T. Townsend, and Lennart T. Bach
Biogeosciences, 21, 2335–2354, https://doi.org/10.5194/bg-21-2335-2024, https://doi.org/10.5194/bg-21-2335-2024, 2024
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Ocean alkalinity enhancement aims to increase atmospheric CO2 sequestration by adding alkaline materials to the ocean. We assessed the environmental effects of olivine and steel slag powder on coastal plankton. Overall, slag is more efficient than olivine in releasing total alkalinity and, thus, in its ability to sequester CO2. Slag also had less environmental effect on the enclosed plankton communities when considering its higher CO2 removal potential based on this 3-week experiment.
Giovanni Galli, Sarah Wakelin, James Harle, Jason Holt, and Yuri Artioli
Biogeosciences, 21, 2143–2158, https://doi.org/10.5194/bg-21-2143-2024, https://doi.org/10.5194/bg-21-2143-2024, 2024
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This work shows that, under a high-emission scenario, oxygen concentration in deep water of parts of the North Sea and Celtic Sea can become critically low (hypoxia) towards the end of this century. The extent and frequency of hypoxia depends on the intensity of climate change projected by different climate models. This is the result of a complex combination of factors like warming, increase in stratification, changes in the currents and changes in biological processes.
Sandy E. Tenorio and Laura Farías
Biogeosciences, 21, 2029–2050, https://doi.org/10.5194/bg-21-2029-2024, https://doi.org/10.5194/bg-21-2029-2024, 2024
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Time series studies show that CH4 is highly dynamic on the coastal ocean surface and planktonic communities are linked to CH4 accumulation, as found in coastal upwelling off Chile. We have identified the crucial role of picoplankton (> 3 µm) in CH4 recycling, especially with the addition of methylated substrates (trimethylamine and methylphosphonic acid) during upwelling and non-upwelling periods. These insights improve understanding of surface ocean CH4 recycling, aiding CH4 emission estimates.
Charlotte A. J. Williams, Tom Hull, Jan Kaiser, Claire Mahaffey, Naomi Greenwood, Matthew Toberman, and Matthew R. Palmer
Biogeosciences, 21, 1961–1971, https://doi.org/10.5194/bg-21-1961-2024, https://doi.org/10.5194/bg-21-1961-2024, 2024
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Oxygen (O2) is a key indicator of ocean health. The risk of O2 loss in the productive coastal/continental slope regions is increasing. Autonomous underwater vehicles equipped with O2 optodes provide lots of data but have problems resolving strong vertical O2 changes. Here we show how to overcome this and calculate how much O2 is supplied to the low-O2 bottom waters via mixing. Bursts in mixing supply nearly all of the O2 to bottom waters in autumn, stopping them reaching ecologically low levels.
Sabine Schmidt and Ibrahima Iris Diallo
Biogeosciences, 21, 1785–1800, https://doi.org/10.5194/bg-21-1785-2024, https://doi.org/10.5194/bg-21-1785-2024, 2024
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Along the French coast facing the Bay of Biscay, the large Gironde and Loire estuaries suffer from hypoxia. This prompted a study of the small Charente estuary located between them. This work reveals a minimum oxygen zone in the Charente estuary, which extends for about 25 km. Temperature is the main factor controlling the hypoxia. This calls for the monitoring of small turbid macrotidal estuaries that are vulnerable to hypoxia, a risk expected to increase with global warming.
Simone R. Alin, Jan A. Newton, Richard A. Feely, Samantha Siedlecki, and Dana Greeley
Biogeosciences, 21, 1639–1673, https://doi.org/10.5194/bg-21-1639-2024, https://doi.org/10.5194/bg-21-1639-2024, 2024
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We provide a new multi-stressor data product that allows us to characterize the seasonality of temperature, O2, and CO2 in the southern Salish Sea and delivers insights into the impacts of major marine heatwave and precipitation anomalies on regional ocean acidification and hypoxia. We also describe the present-day frequencies of temperature, O2, and ocean acidification conditions that cross thresholds of sensitive regional species that are economically or ecologically important.
Pamela Linford, Iván Pérez-Santos, Paulina Montero, Patricio A. Díaz, Claudia Aracena, Elías Pinilla, Facundo Barrera, Manuel Castillo, Aida Alvera-Azcárate, Mónica Alvarado, Gabriel Soto, Cécile Pujol, Camila Schwerter, Sara Arenas-Uribe, Pilar Navarro, Guido Mancilla-Gutiérrez, Robinson Altamirano, Javiera San Martín, and Camila Soto-Riquelme
Biogeosciences, 21, 1433–1459, https://doi.org/10.5194/bg-21-1433-2024, https://doi.org/10.5194/bg-21-1433-2024, 2024
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The Patagonian fjords comprise a world region where low-oxygen water and hypoxia conditions are observed. An in situ dataset was used to quantify the mechanism involved in the presence of these conditions in northern Patagonian fjords. Water mass analysis confirmed the contribution of Equatorial Subsurface Water in the advection of the low-oxygen water, and hypoxic conditions occurred when the community respiration rate exceeded the gross primary production.
Ting Wang, Buyun Du, Inke Forbrich, Jun Zhou, Joshua Polen, Elsie M. Sunderland, Prentiss H. Balcom, Celia Chen, and Daniel Obrist
Biogeosciences, 21, 1461–1476, https://doi.org/10.5194/bg-21-1461-2024, https://doi.org/10.5194/bg-21-1461-2024, 2024
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The strong seasonal increases of Hg in aboveground biomass during the growing season and the lack of changes observed after senescence in this salt marsh ecosystem suggest physiologically controlled Hg uptake pathways. The Hg sources found in marsh aboveground tissues originate from a mix of sources, unlike terrestrial ecosystems, where atmospheric GEM is the main source. Belowground plant tissues mostly take up Hg from soils. Overall, the salt marsh currently serves as a small net Hg sink.
Eleanor Simpson, Debby Ianson, Karen E. Kohfeld, Ana C. Franco, Paul A. Covert, Marty Davelaar, and Yves Perreault
Biogeosciences, 21, 1323–1353, https://doi.org/10.5194/bg-21-1323-2024, https://doi.org/10.5194/bg-21-1323-2024, 2024
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Shellfish aquaculture operates in nearshore areas where data on ocean acidification parameters are limited. We show daily and seasonal variability in pH and saturation states of calcium carbonate at nearshore aquaculture sites in British Columbia, Canada, and determine the contributing drivers of this variability. We find that nearshore locations have greater variability than open waters and that the uptake of carbon by phytoplankton is the major driver of pH and saturation state variability.
S. Alejandra Castillo Cieza, Rachel H. R. Stanley, Pierre Marrec, Diana N. Fontaine, E. Taylor Crockford, Dennis J. McGillicuddy Jr., Arshia Mehta, Susanne Menden-Deuer, Emily E. Peacock, Tatiana A. Rynearson, Zoe O. Sandwith, Weifeng Zhang, and Heidi M. Sosik
Biogeosciences, 21, 1235–1257, https://doi.org/10.5194/bg-21-1235-2024, https://doi.org/10.5194/bg-21-1235-2024, 2024
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The coastal ocean in the northeastern USA provides many services, including fisheries and habitats for threatened species. In summer 2019, a bloom occurred of a large unusual phytoplankton, the diatom Hemiaulus, with nitrogen-fixing symbionts. This led to vast changes in productivity and grazing rates in the ecosystem. This work shows that the emergence of one species can have profound effects on ecosystem function. Such changes may become more prevalent as the ocean warms due to climate change.
Weiyi Tang, Jeff Talbott, Timothy Jones, and Bess B. Ward
EGUsphere, https://doi.org/10.5194/egusphere-2024-638, https://doi.org/10.5194/egusphere-2024-638, 2024
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Wastewater treatment plants (WWTPs) are known to be hotspots of greenhouse gas emissions. However, the impact of WWTPs on the emission of the greenhouse gas N2O in downstream aquatic environments is less constrained. We found spatially and temporally variable but overall higher N2O concentrations and fluxes in waters downstream of WWTPs, pointing to the need for efficient N2O removal in addition to treating nitrogen in WWTPs.
Lennart Thomas Bach, Aaron James Ferderer, Julie LaRoche, and Kai Georg Schulz
EGUsphere, https://doi.org/10.5194/egusphere-2024-692, https://doi.org/10.5194/egusphere-2024-692, 2024
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Ocean Alkalinity Enhancement (OAE) is an emerging marine CO2 removal method but its environmental effects are insufficiently understood. The OAE Pelagic Impact Intercomparison Project (OAEPIIP) provides funding for a standardized and globally replicated microcosm experiment to study the effects of OAE on plankton communities. Here, we provide a detailed manual on the OAEPIIP experiment. We expect OAEPIIP to help build scientific consensus on the effects of OAE on plankton.
Claudine Hauri, Brita Irving, Sam Dupont, Rémi Pagés, Donna D. W. Hauser, and Seth L. Danielson
Biogeosciences, 21, 1135–1159, https://doi.org/10.5194/bg-21-1135-2024, https://doi.org/10.5194/bg-21-1135-2024, 2024
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Arctic marine ecosystems are highly susceptible to impacts of climate change and ocean acidification. We present pH and pCO2 time series (2016–2020) from the Chukchi Ecosystem Observatory and analyze the drivers of the current conditions to get a better understanding of how climate change and ocean acidification could affect the ecological niches of organisms.
William Hiles, Lucy C. Miller, Craig Smeaton, and William E. N. Austin
Biogeosciences, 21, 929–948, https://doi.org/10.5194/bg-21-929-2024, https://doi.org/10.5194/bg-21-929-2024, 2024
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Saltmarsh soils may help to limit the rate of climate change by storing carbon. To understand their impacts, they must be accurately mapped. We use drone data to estimate the size of three saltmarshes in NE Scotland. We find that drone imagery, combined with tidal data, can reliably inform our understanding of saltmarsh size. When compared with previous work using vegetation communities, we find that our most reliable new estimates of stored carbon are 15–20 % smaller than previously estimated.
De'Marcus Robinson, Anh L. D. Pham, David J. Yousavich, Felix Janssen, Frank Wenzhöfer, Eleanor C. Arrington, Kelsey M. Gosselin, Marco Sandoval-Belmar, Matthew Mar, David L. Valentine, Daniele Bianchi, and Tina Treude
Biogeosciences, 21, 773–788, https://doi.org/10.5194/bg-21-773-2024, https://doi.org/10.5194/bg-21-773-2024, 2024
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The present study suggests that high release of ferrous iron from the seafloor of the oxygen-deficient Santa Barabara Basin (California) supports surface primary productivity, creating positive feedback on seafloor iron release by enhancing low-oxygen conditions in the basin.
David J. Yousavich, De'Marcus Robinson, Xuefeng Peng, Sebastian J. E. Krause, Frank Wenzhöfer, Felix Janssen, Na Liu, Jonathan Tarn, Franklin Kinnaman, David L. Valentine, and Tina Treude
Biogeosciences, 21, 789–809, https://doi.org/10.5194/bg-21-789-2024, https://doi.org/10.5194/bg-21-789-2024, 2024
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Declining oxygen (O2) concentrations in coastal oceans can threaten people’s ways of life and food supplies. Here, we investigate how mats of bacteria that proliferate on the seafloor of the Santa Barbara Basin sustain and potentially worsen these O2 depletion events through their unique chemoautotrophic metabolism. Our study shows how changes in seafloor microbiology and geochemistry brought on by declining O2 concentrations can help these mats grow as well as how that growth affects the basin.
Esdoorn Willcox, Marcos Lemes, Thomas Juul-Pedersen, Mikael Kristian Sejr, Johnna Michelle Holding, and Søren Rysgaard
EGUsphere, https://doi.org/10.5194/egusphere-2024-6, https://doi.org/10.5194/egusphere-2024-6, 2024
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For this work we measured the chemistry of seawater from bottles obtained from different depths, lon- and latitudes off the east coast of the Northeast Greenland national park to determine what is influencing concentrations of dissolved CO2. Historically, the region has always been thought to take up CO2 from the atmosphere but we show that it is possible for the region to become a source in late summer and discuss what variables may be related to such changes.
Mallory Ringham, Nathan Hirtle, Cody Shaw, Xi Lu, Julian Herndon, Brendan Carter, and Matthew Eisaman
EGUsphere, https://doi.org/10.5194/egusphere-2024-108, https://doi.org/10.5194/egusphere-2024-108, 2024
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Ocean alkalinity enhancement leverages the large surface area and carbon storage capacity of the oceans to store atmospheric CO2 as dissolved bicarbonate. We monitored CO2 uptake in seawater treated with NaOH to establish operational boundaries for carbon removal experiments. Preliminary results show CO2 equilibration occurred on order of weeks to months, was consistent with values expected from equilibration calculations, and was limited by mineral precipitation at high pH and CaCO3 saturation.
Krysten Rutherford, Katja Fennel, Lina Garcia Suarez, and Jasmin G. John
Biogeosciences, 21, 301–314, https://doi.org/10.5194/bg-21-301-2024, https://doi.org/10.5194/bg-21-301-2024, 2024
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We downscaled two mid-century (~2075) ocean model projections to a high-resolution regional ocean model of the northwest North Atlantic (NA) shelf. In one projection, the NA shelf break current practically disappears; in the other it remains almost unchanged. This leads to a wide range of possible future shelf properties. More accurate projections of coastal circulation features would narrow the range of possible outcomes of biogeochemical projections for shelf regions.
Lennart Thomas Bach
Biogeosciences, 21, 261–277, https://doi.org/10.5194/bg-21-261-2024, https://doi.org/10.5194/bg-21-261-2024, 2024
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Ocean alkalinity enhancement (OAE) is a widely considered marine carbon dioxide removal method. OAE aims to accelerate chemical rock weathering, which is a natural process that slowly sequesters atmospheric carbon dioxide. This study shows that the addition of anthropogenic alkalinity via OAE can reduce the natural release of alkalinity and, therefore, reduce the efficiency of OAE for climate mitigation. However, the additionality problem could be mitigated via a variety of activities.
Tsuneo Ono, Daisuke Muraoka, Masahiro Hayashi, Makiko Yorifuji, Akihiro Dazai, Shigeyuki Omoto, Takehiro Tanaka, Tomohiro Okamura, Goh Onitsuka, Kenji Sudo, Masahiko Fujii, Ryuji Hamanoue, and Masahide Wakita
Biogeosciences, 21, 177–199, https://doi.org/10.5194/bg-21-177-2024, https://doi.org/10.5194/bg-21-177-2024, 2024
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We carried out parallel year-round observations of pH and related parameters in five stations around the Japan coast. It was found that short-term acidified situations with Omega_ar less than 1.5 occurred at four of five stations. Most of such short-term acidified events were related to the short-term low salinity event, and the extent of short-term pH drawdown at high freshwater input was positively correlated with the nutrient concentration of the main rivers that flow into the coastal area.
Riel Carlo O. Ingeniero, Gesa Schulz, and Hermann W. Bange
EGUsphere, https://doi.org/10.5194/egusphere-2023-3009, https://doi.org/10.5194/egusphere-2023-3009, 2023
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Our research is the first to measure dissolved NO concentrations in temperate estuarine waters, providing insights into its distribution under varying conditions and enhancing our understanding of its production processes. We found that the lower Elbe Estuary and the Hamburg Port area were a source of atmospheric NO. Our results suggest that NO in the lower Elbe Estuary was produced during nitrification, whereas NO in the Hamburg Port area was produced during nitrifier-denitrification.
K. Mareike Paul, Martijn Hermans, Sami A. Jokinen, Inda Brinkmann, Helena L. Filipsson, and Tom Jilbert
Biogeosciences, 20, 5003–5028, https://doi.org/10.5194/bg-20-5003-2023, https://doi.org/10.5194/bg-20-5003-2023, 2023
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Seawater naturally contains trace metals such as Mo and U, which accumulate under low oxygen conditions on the seafloor. Previous studies have used sediment Mo and U contents as an archive of changing oxygen concentrations in coastal waters. Here we show that in fjords the use of Mo and U for this purpose may be impaired by additional processes. Our findings have implications for the reliable use of Mo and U to reconstruct oxygen changes in fjords.
Hannah Sharpe, Michel Gosselin, Catherine Lalande, Alexandre Normandeau, Jean-Carlos Montero-Serrano, Khouloud Baccara, Daniel Bourgault, Owen Sherwood, and Audrey Limoges
Biogeosciences, 20, 4981–5001, https://doi.org/10.5194/bg-20-4981-2023, https://doi.org/10.5194/bg-20-4981-2023, 2023
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We studied the impact of submarine canyon processes within the Pointe-des-Monts system on biogenic matter export and phytoplankton assemblages. Using data from three oceanographic moorings, we show that the canyon experienced two low-amplitude sediment remobilization events in 2020–2021 that led to enhanced particle fluxes in the deep-water column layer > 2.6 km offshore. Sinking phytoplankton fluxes were lower near the canyon compared to background values from the lower St. Lawrence Estuary.
Dewi Langlet, Florian Mermillod-Blondin, Noémie Deldicq, Arthur Bauville, Gwendoline Duong, Lara Konecny, Mylène Hugoni, Lionel Denis, and Vincent M. P. Bouchet
Biogeosciences, 20, 4875–4891, https://doi.org/10.5194/bg-20-4875-2023, https://doi.org/10.5194/bg-20-4875-2023, 2023
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Benthic foraminifera are single-cell marine organisms which can move in the sediment column. They were previously reported to horizontally and vertically transport sediment particles, yet the impact of their motion on the dissolved fluxes remains unknown. Using microprofiling, we show here that foraminiferal burrow formation increases the oxygen penetration depth in the sediment, leading to a change in the structure of the prokaryotic community.
Masahiko Fujii, Ryuji Hamanoue, Lawrence Patrick Cases Bernardo, Tsuneo Ono, Akihiro Dazai, Shigeyuki Oomoto, Masahide Wakita, and Takehiro Tanaka
Biogeosciences, 20, 4527–4549, https://doi.org/10.5194/bg-20-4527-2023, https://doi.org/10.5194/bg-20-4527-2023, 2023
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This is the first study of the current and future impacts of climate change on Pacific oyster farming in Japan. Future coastal warming and acidification may affect oyster larvae as a result of longer exposure to lower-pH waters. A prolonged spawning period may harm oyster processing by shortening the shipping period and reducing oyster quality. To minimize impacts on Pacific oyster farming, in addition to mitigation measures, local adaptation measures may be required.
Marlena Szeligowska, Déborah Benkort, Anna Przyborska, Mateusz Moskalik, Bernabé Moreno, Emilia Trudnowska, and Katarzyna Błachowiak-Samołyk
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-162, https://doi.org/10.5194/bg-2023-162, 2023
Revised manuscript accepted for BG
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European Arctic experiences rapid regional warming resulting in the retreat of glaciers terminating in the sea onto land. Due to this process, area of one of the well-studied fjords, Hornsund, increased by 100 km2 and 38 %. Using improved mathematical model, we estimated that despite some negative consequences of glacial meltwater release such newly ice-free area markedly contribute to atmospheric carbon uptake and become efficient carbon sinks.
Taketoshi Kodama, Atsushi Nishimoto, Ken-ichi Nakamura, Misato Nakae, Naoki Iguchi, Yosuke Igeta, and Yoichi Kogure
Biogeosciences, 20, 3667–3682, https://doi.org/10.5194/bg-20-3667-2023, https://doi.org/10.5194/bg-20-3667-2023, 2023
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Carbon and nitrogen are essential elements for organisms; their stable isotope ratios (13C : 12C, 15N : 14N) are useful tools for understanding turnover and movement in the ocean. In the Sea of Japan, the environment is rapidly being altered by human activities. The 13C : 12C of small organic particles is increased by active carbon fixation, and phytoplankton growth increases the values. The 15N : 14N variations suggest that nitrates from many sources contribute to organic production.
Aubin Thibault de Chanvalon, George W. Luther, Emily R. Estes, Jennifer Necker, Bradley M. Tebo, Jianzhong Su, and Wei-Jun Cai
Biogeosciences, 20, 3053–3071, https://doi.org/10.5194/bg-20-3053-2023, https://doi.org/10.5194/bg-20-3053-2023, 2023
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The intensity of the oceanic trap of CO2 released by anthropogenic activities depends on the alkalinity brought by continental weathering. Between ocean and continent, coastal water and estuaries can limit or favour the alkalinity transfer. This study investigate new interactions between dissolved metals and alkalinity in the oxygen-depleted zone of estuaries.
Joonas J. Virtasalo, Peter Österholm, and Eero Asmala
Biogeosciences, 20, 2883–2901, https://doi.org/10.5194/bg-20-2883-2023, https://doi.org/10.5194/bg-20-2883-2023, 2023
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We mixed acidic metal-rich river water from acid sulfate soils and seawater in the laboratory to study the flocculation of dissolved metals and organic matter in estuaries. Al and Fe flocculated already at a salinity of 0–2 to large organic flocs (>80 µm size). Precipitation of Al and Fe hydroxide flocculi (median size 11 µm) began when pH exceeded ca. 5.5. Mn transferred weakly to Mn hydroxides and Co to the flocs. Up to 50 % of Cu was associated with the flocs, irrespective of seawater mixing.
Moritz Baumann, Allanah Joy Paul, Jan Taucher, Lennart Thomas Bach, Silvan Goldenberg, Paul Stange, Fabrizio Minutolo, and Ulf Riebesell
Biogeosciences, 20, 2595–2612, https://doi.org/10.5194/bg-20-2595-2023, https://doi.org/10.5194/bg-20-2595-2023, 2023
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The sinking velocity of marine particles affects how much atmospheric CO2 is stored inside our oceans. We measured particle sinking velocities in the Peruvian upwelling system and assessed their physical and biochemical drivers. We found that sinking velocity was mainly influenced by particle size and porosity, while ballasting minerals played only a minor role. Our findings help us to better understand the particle sinking dynamics in this highly productive marine system.
Kyle E. Hinson, Marjorie A. M. Friedrichs, Raymond G. Najjar, Maria Herrmann, Zihao Bian, Gopal Bhatt, Pierre St-Laurent, Hanqin Tian, and Gary Shenk
Biogeosciences, 20, 1937–1961, https://doi.org/10.5194/bg-20-1937-2023, https://doi.org/10.5194/bg-20-1937-2023, 2023
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Climate impacts are essential for environmental managers to consider when implementing nutrient reduction plans designed to reduce hypoxia. This work highlights relative sources of uncertainty in modeling regional climate impacts on the Chesapeake Bay watershed and consequent declines in bay oxygen levels. The results demonstrate that planned water quality improvement goals are capable of reducing hypoxia levels by half, offsetting climate-driven impacts on terrestrial runoff.
Linquan Mu, Jaime B. Palter, and Hongjie Wang
Biogeosciences, 20, 1963–1977, https://doi.org/10.5194/bg-20-1963-2023, https://doi.org/10.5194/bg-20-1963-2023, 2023
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Enhancing ocean alkalinity accelerates carbon dioxide removal from the atmosphere. We hypothetically added alkalinity to the Amazon River and examined the increment of the carbon uptake by the Amazon plume. We also investigated the minimum alkalinity addition in which this perturbation at the river mouth could be detected above the natural variability.
Karl M. Attard, Anna Lyssenko, and Iván F. Rodil
Biogeosciences, 20, 1713–1724, https://doi.org/10.5194/bg-20-1713-2023, https://doi.org/10.5194/bg-20-1713-2023, 2023
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Aquatic plants produce a large amount of organic matter through photosynthesis that, following erosion, is deposited on the seafloor. In this study, we show that plant detritus can trigger low-oxygen conditions (hypoxia) in shallow coastal waters, making conditions challenging for most marine animals. We propose that the occurrence of hypoxia may be underestimated because measurements typically do not consider the region closest to the seafloor, where detritus accumulates.
M. James McLaughlin, Cindy Bessey, Gary A. Kendrick, John Keesing, and Ylva S. Olsen
Biogeosciences, 20, 1011–1026, https://doi.org/10.5194/bg-20-1011-2023, https://doi.org/10.5194/bg-20-1011-2023, 2023
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Coral reefs face increasing pressures from environmental change at present. The coral reef framework is produced by corals and calcifying algae. The Kimberley region of Western Australia has escaped land-based anthropogenic impacts. Specimens of the dominant coral and algae were collected from Browse Island's reef platform and incubated in mesocosms to measure calcification and production patterns of oxygen. This study provides important data on reef building and climate-driven effects.
Patricia Ayón Dejo, Elda Luz Pinedo Arteaga, Anna Schukat, Jan Taucher, Rainer Kiko, Helena Hauss, Sabrina Dorschner, Wilhelm Hagen, Mariona Segura-Noguera, and Silke Lischka
Biogeosciences, 20, 945–969, https://doi.org/10.5194/bg-20-945-2023, https://doi.org/10.5194/bg-20-945-2023, 2023
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Ocean upwelling regions are highly productive. With ocean warming, severe changes in upwelling frequency and/or intensity and expansion of accompanying oxygen minimum zones are projected. In a field experiment off Peru, we investigated how different upwelling intensities affect the pelagic food web and found failed reproduction of dominant zooplankton. The changes projected could severely impact the reproductive success of zooplankton communities and the pelagic food web in upwelling regions.
Mathilde Jutras, Alfonso Mucci, Gwenaëlle Chaillou, William A. Nesbitt, and Douglas W. R. Wallace
Biogeosciences, 20, 839–849, https://doi.org/10.5194/bg-20-839-2023, https://doi.org/10.5194/bg-20-839-2023, 2023
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The deep waters of the lower St Lawrence Estuary and gulf have, in the last decades, experienced a strong decline in their oxygen concentration. Below 65 µmol L-1, the waters are said to be hypoxic, with dire consequences for marine life. We show that the extent of the hypoxic zone shows a seven-fold increase in the last 20 years, reaching 9400 km2 in 2021. After a stable period at ~ 65 µmol L⁻¹ from 1984 to 2019, the oxygen level also suddenly decreased to ~ 35 µmol L-1 in 2020.
Sachi Umezawa, Manami Tozawa, Yuichi Nosaka, Daiki Nomura, Hiroji Onishi, Hiroto Abe, Tetsuya Takatsu, and Atsushi Ooki
Biogeosciences, 20, 421–438, https://doi.org/10.5194/bg-20-421-2023, https://doi.org/10.5194/bg-20-421-2023, 2023
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We conducted repetitive observations in Funka Bay, Japan, during the spring bloom 2019. We found nutrient concentration decreases in the dark subsurface layer during the bloom. Incubation experiments confirmed that diatoms could consume nutrients at a substantial rate, even in darkness. We concluded that the nutrient reduction was mainly caused by nutrient consumption by diatoms in the dark.
Dirk Jong, Lisa Bröder, Tommaso Tesi, Kirsi H. Keskitalo, Nikita Zimov, Anna Davydova, Philip Pika, Negar Haghipour, Timothy I. Eglinton, and Jorien E. Vonk
Biogeosciences, 20, 271–294, https://doi.org/10.5194/bg-20-271-2023, https://doi.org/10.5194/bg-20-271-2023, 2023
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With this study, we want to highlight the importance of studying both land and ocean together, and water and sediment together, as these systems function as a continuum, and determine how organic carbon derived from permafrost is broken down and its effect on global warming. Although on the one hand it appears that organic carbon is removed from sediments along the pathway of transport from river to ocean, it also appears to remain relatively ‘fresh’, despite this removal and its very old age.
Georgia Filippi, Manos Dassenakis, Vasiliki Paraskevopoulou, and Konstantinos Lazogiannis
Biogeosciences, 20, 163–189, https://doi.org/10.5194/bg-20-163-2023, https://doi.org/10.5194/bg-20-163-2023, 2023
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The pollution of the western Saronikos Gulf from heavy metals has been examined through the study of marine sediment cores. It is a deep gulf (maximum depth 440 m) near Athens affected by industrial and volcanic activity. Eight cores were received from various stations and depths and analysed for their heavy metal content and geochemical characteristics. The results were evaluated by using statistical methods, environmental indicators and comparisons with old data.
Jing He and Michael D. Tyka
Biogeosciences, 20, 27–43, https://doi.org/10.5194/bg-20-27-2023, https://doi.org/10.5194/bg-20-27-2023, 2023
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Recently, ocean alkalinity enhancement (OAE) has gained interest as a scalable way to address the urgent need for negative CO2 emissions. In this paper we examine the capacity of different coastlines to tolerate alkalinity enhancement and the time scale of CO2 uptake following the addition of a given quantity of alkalinity. The results suggest that OAE has significant potential and identify specific favorable and unfavorable coastlines for its deployment.
Arnaud Laurent, Haiyan Zhang, and Katja Fennel
Biogeosciences, 19, 5893–5910, https://doi.org/10.5194/bg-19-5893-2022, https://doi.org/10.5194/bg-19-5893-2022, 2022
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The Changjiang is the main terrestrial source of nutrients to the East China Sea (ECS). Nutrient delivery to the ECS has been increasing since the 1960s, resulting in low oxygen (hypoxia) during phytoplankton decomposition in summer. River phosphorus (P) has increased less than nitrogen, and therefore, despite the large nutrient delivery, phytoplankton growth can be limited by the lack of P. Here, we investigate this link between P limitation, phytoplankton production/decomposition, and hypoxia.
Coline Poppeschi, Guillaume Charria, Anne Daniel, Romaric Verney, Peggy Rimmelin-Maury, Michaël Retho, Eric Goberville, Emilie Grossteffan, and Martin Plus
Biogeosciences, 19, 5667–5687, https://doi.org/10.5194/bg-19-5667-2022, https://doi.org/10.5194/bg-19-5667-2022, 2022
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This paper aims to understand interannual changes in the initiation of the phytoplankton growing period (IPGP) in the current context of global climate changes over the last 20 years. An important variability in the timing of the IPGP is observed with a trend towards a later IPGP during this last decade. The role and the impact of extreme events (cold spells, floods, and wind burst) on the IPGP is also detailed.
Lin Yang, Jing Zhang, Anja Engel, and Gui-Peng Yang
Biogeosciences, 19, 5251–5268, https://doi.org/10.5194/bg-19-5251-2022, https://doi.org/10.5194/bg-19-5251-2022, 2022
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Enrichment factors of dissolved organic matter (DOM) in the eastern marginal seas of China exhibited a significant spatio-temporal variation. Photochemical and enrichment processes co-regulated DOM enrichment in the sea-surface microlayer (SML). Autochthonous DOM was more frequently enriched in the SML than terrestrial DOM. DOM in the sub-surface water exhibited higher aromaticity than that in the SML.
Mona Norbisrath, Johannes Pätsch, Kirstin Dähnke, Tina Sanders, Gesa Schulz, Justus E. E. van Beusekom, and Helmuth Thomas
Biogeosciences, 19, 5151–5165, https://doi.org/10.5194/bg-19-5151-2022, https://doi.org/10.5194/bg-19-5151-2022, 2022
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Total alkalinity (TA) regulates the oceanic storage capacity of atmospheric CO2. TA is also metabolically generated in estuaries and influences coastal carbon storage through its inflows. We used water samples and identified the Hamburg port area as the one with highest TA generation. Of the overall riverine TA load, 14 % is generated within the estuary. Using a biogeochemical model, we estimated potential effects on the coastal carbon storage under possible anthropogenic and climate changes.
Le Zhang and Z. George Xue
Biogeosciences, 19, 4589–4618, https://doi.org/10.5194/bg-19-4589-2022, https://doi.org/10.5194/bg-19-4589-2022, 2022
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We adopt a high-resolution carbon model for the Gulf of Mexico (GoM) and calculate the decadal trends of important carbon system variables in the GoM from 2001 to 2019. The GoM surface CO2 values experienced a steady increase over the past 2 decades, and the ocean surface pH is declining. Although carbonate saturation rates remain supersaturated with aragonite, they show a slightly decreasing trend. The northern GoM is a stronger carbon sink than we thought.
Cited articles
Anderson, J. H.: The metabolism of hydroxylamine to nitrite by Nitrosomonas,
Biochem. J., 91, 8–17, https://doi.org/10.1042/bj0910008, 1964.
Arévalo-Martínez, D. L., Kock, A., Löscher, C. R., Schmitz, R.
A., Bange, H. W., Arevalo-Martínez, D., Kock, A., Löscher, C. R.,
Schmitz, R. A., and Bange, H. W.: Massive nitrous oxide emissions from the
tropical South Pacific Ocean, Nat. Geosci., 8, 530–533,
https://doi.org/10.1038/NGEO2469, 2015.
Arévalo-Martínez, D. L., Kock, A., Löscher, C. R., Schmitz, R. A., Stramma, L., and Bange, H. W.: Influence of mesoscale eddies on the distribution of nitrous oxide in the eastern tropical South Pacific, Biogeosciences, 13, 1105–1118, https://doi.org/10.5194/bg-13-1105-2016, 2016.
Babbin, A. R., Keil, R. G., Devol, A. H., and Ward, B. B.: Organic matter
stoichiometry, flux, and oxygen control nitrogen loss in the ocean,
Science, 344, 406–408, https://doi.org/10.1126/science.1248364, 2014.
Babbin, A. R., Bianchi, D., Jayakumar, A., and Ward, B. B.: Rapid nitrous
oxide cycling in the suboxic ocean, Science, 348, 1127–1129,
https://doi.org/10.1126/science.aaa8380, 2015.
Bakker, D. C. E., Bange, H. W., Gruber, N., Johannessen, T., Upstill-Goddard, R. C., Borges, A. V., Delille, B., Löscher, C. R., Naqvi, W. A., Omar, A. M., and Santana-Casiano, J. M.: Air-Sea Interactions of Natural Long-Lived Greenhouse Gases (CO2, N2O, CH4) in a Changing Climate, in: Ocean-Atmosphere Interactions of Gases and Particles, 55–112, Springer, Berlin, Heidelberg, 2014.
Bange, H. W.: Gaseous nitrogen compounds (NO, N2O, N2, NH3)
in the ocean, in: Nitrogen in the marine environment, 51–94, Elsevier,
Amsterdam, 2008.
Battaglia, G. and Joos, F.: Marine N2O Emissions From Nitrification and
Denitrification Constrained by Modern Observations and Projected in
Multimillennial Global Warming Simulations, Global Biogeochem. Cy.,
32, 92–121, https://doi.org/10.1002/2017GB005671, 2018.
Beman, J. M., Chow, C., King, A. L., Feng, Y., and Fuhrman, J. A.: Global
declines in oceanic nitrification rates as a consequence of ocean
acidification, P. Natl. Acad. Sci. USA, 108, 208–213,
https://doi.org/10.1073/pnas.1011053108, 2011.
Bertagnolli, A. D. and Ulloa, O.: Hydrography shapes community composition
and diversity of amoA-containing Thaumarchaeota in the coastal waters off
central Chile, Env. Microb. Rep., 9, 717–728,
https://doi.org/10.1111/1758-2229.12579, 2017.
Biller, S. J., Mosier, A. C., Wells, G. F., and Francis, C. A.: Global
Biodiversity of Aquatic Ammonia-Oxidizing Archaea is Partitioned by Habitat,
Front. Microbiol., 3, 252, https://doi.org/10.3389/fmicb.2012.00252, 2012.
Blum, J. M., Su, Q., Ma, Y., Valverde-Pérez, B., Domingo-Félez, C.,
Jensen, M. M., and Smets, B. F.: The pH dependency of N-converting enzymatic
processes, pathways and microbes: effect on net N2O production,
Environ. Microbiol., 20, 1623–1640, https://doi.org/10.1111/1462-2920.14063, 2018.
Bonaglia, S., Klawonn, I., De Brabandere, L., Deutsch, B., Thamdrup, B., and
Brüchert, V.: Denitrification and DNRA at the Baltic Sea oxic–anoxic
interface: Substrate spectrum and kinetics, Limnol. Oceanogr., 61,
1900–1915, https://doi.org/10.1002/lno.10343, 2016.
Borcard, D., Legendre, P., and Drapeau, P.: Partialling out the Spatial
Component of Ecological Variation, Ecology, 73, 1045–1055,
https://doi.org/10.2307/1940179, 1992.
Bourbonnais, A., Altabet, M. A., Charoenpong, C. N., Larkum, J., Hu, H.,
Bange, H. W., and Stramma, L.: N-loss isotope effects in the Peru oxygen
minimum zone studied using a mesoscale eddy as a natural tracer experiment,
Global Biogeochem. Cy., 29, 793–811, https://doi.org/10.1002/2014GB005001, 2015.
Bourbonnais, A., Letscher, R. T., Bange, H. W., Échevin, V., Larkum, J.,
Mohn, J., Yoshida, N., and Altabet, M. A.: N2O production and
consumption from stable isotopic and concentration data in the Peruvian
coastal upwelling system, Global Biogeochem. Cy., 31, 678–698,
https://doi.org/10.1002/2016GB005567, 2017.
Boyd, P. W., Sherry, N. D., Berges, J. A., Bishop, J. K. B., Calvert, S. E.,
Charette, M. A., Giovannoni, S. J., Goldblatt, R., Harrison, P. J., Moran,
S. B., Roy, S., Soon, M., Strom, S., Thibault, D., Vergin, K. L., Whitney,
F. A., and Wong, C. S.: Transformations of biogenic particulates from the
pelagic to the deep ocean realm, Deep-Sea Res. Pt. II,
46, 2761–2792, https://doi.org/10.1016/S0967-0645(99)00083-1, 1999.
Braker, G., Fesefeldt, A., and Witzel, K. P.: Development of PCR primer
systems for amplification of nitrite reductase genes (nirK and nirS) to
detect denitrifying bacteria in environmental samples, Appl. Environ.
Microb., 64, 3769–3775, 1998.
Breider, F., Yoshikawa, C., Makabe, A., Toyoda, S., Wakita, M., Matsui, Y.,
Kawagucci, S., Fujiki, T., Harada, N., and Yoshida, N.: Response of N2O
production rate to ocean acidification in the western North Pacific, Nat.
Clim. Change, 9, 954–958, https://doi.org/10.1038/s41558-019-0605-7, 2019.
Bristow, L. A., Dalsgaard, T., Tiano, L., Mills, D. B., Bertagnolli, A. D.,
Wright, J. J., Hallam, S. J., Ulloa, O., Canfield, D. E., Revsbech, N. P.,
and Thamdrup, B.: Ammonium and nitrite oxidation at nanomolar oxygen
concentrations in oxygen minimum zone waters, P. Natl. Acad. Sci. USA,
113, 201600359, https://doi.org/10.1073/pnas.1600359113, 2016a.
Bristow, L. A., Callbeck, C. M., Larsen, M., Altabet, M. A., Dekaezemacker,
J., Forth, M., Gauns, M., Glud, R. N., Kuypers, M. M. M., Lavik, G.,
Milucka, J., Naqvi, S. W. A., Pratihary, A., Revsbech, N. P., Thamdrup, B.,
Treusch, A. H., and Canfield, D. E.: N2 production rates limited by
nitrite availability in the Bay of Bengal oxygen minimum zone, Nat. Geosci., 10, 24–29,
https://doi.org/10.1038/ngeo2847, 2016b.
Buitenhuis, E. T., Suntharalingam, P., and Le Quéré, C.: Constraints on global oceanic emissions of N2O from observations and models, Biogeosciences, 15, 2161–2175, https://doi.org/10.5194/bg-15-2161-2018, 2018.
Callbeck, C. M., Lavik, G., Ferdelman, T. G., Fuchs, B., Gruber-Vodicka, H.
R., Hach, P. F., Littmann, S., Schoffelen, N. J., Kalvelage, T., Thomsen,
S., Schunck, H., Löscher, C. R., Schmitz, R. A., and Kuypers, M. M. M.:
Oxygen minimum zone cryptic sulfur cycling sustained by offshore transport
of key sulfur oxidizing bacteria, Nat. Commun., 9, 1–11,
https://doi.org/10.1038/s41467-018-04041-x, 2018.
Capone, D. G. and Hutchins, D. A.: Microbial biogeochemistry of coastal
upwelling regimes in a changing ocean, Nat. Geosci., 6, 711–717,
https://doi.org/10.1038/ngeo1916, 2013.
Caranto, J. D., Lancaster, K. M., Ma, C., Jensen, M. M., Smets, B. F.,
Thamdrup, B., Jayakumar, A., Chang, B. X., Widner, B., Bernhardt, P.,
Mulholland, M. R., Ward, B. B., Sinha, E., Michalak, A. M., Balaji, V.,
Lycus, P., Bøthun, K., Bergaust, L., Shapleigh, J., Bakken, L.,
Frostegård, Å., Massicotte, P., Asmala, E., Stedmon, C., Markager,
S., Caranto, J. D., and Lancaster, K. M.: Nitric oxide is an obligate
bacterial nitrification intermediate produced by hydroxylamine
oxidoreductase, P. Natl. Acad. Sci. USA, 114, 8217–8222,
https://doi.org/10.1073/pnas.1704504114, 2017.
Carini, P., Dupont, C. L., and Santoro, A. E.: Patterns of thaumarchaeal gene
expression in culture and diverse marine environments, Environ. Microbiol., 20, 2112–2124,
https://doi.org/10.1111/1462-2920.14107, 2018.
Carrasco, C., Karstensen, J., and Farias, L.: On the Nitrous Oxide
Accumulation in Intermediate Waters of the Eastern South Pacific Ocean,
Front. Mar. Sci., 4, 24, https://doi.org/10.3389/fmars.2017.00024, 2017.
Casciotti, L. and Ward, B. B.: Phylogenetic analysis of nitric oxide
reductase gene homologues from aerobic ammonia-oxidizing bacteria, FEMS Microbiol. Ecol., 52, 197–205, https://doi.org/10.1016/j.femsec.2004.11.002, 2005.
Casciotti, K. L., Forbes, M., Vedamati, J., Peters, B., Martin, T., and
Mordy, C. W.: Nitrous oxide cycling in the Eastern Tropical South Pacific as
inferred from isotopic and isotopomeric data, Deep-Sea Res. Pt. II, 156, 155–167, https://doi.org/10.1016/J.DSR2.2018.07.014, 2018.
Chang, B. X., Rich, J. R., Jayakumar, A., Naik, H., Pratihary, A., Keil, R.
G., Ward, B. B., and Devol, A. H.: The effect of organic carbon on fixed
nitrogen loss in the eastern tropical South Pacific and Arabian Sea oxygen
deficient zones, Limnol. Oceanogr., 59, 1267–1274,
https://doi.org/10.4319/lo.2014.59.4.1267, 2014.
Charpentier, J., Farias, L., Yoshida, N., Boontanon, N., and Raimbault, P.: Nitrous oxide distribution and its origin in the central and eastern South Pacific Subtropical Gyre, Biogeosciences, 4, 729–741, https://doi.org/10.5194/bg-4-729-2007, 2007.
Chavez, F. P. and Messié, M.: A comparison of Eastern Boundary Upwelling
Ecosystems, Prog. Oceanogr., 83, 80–96,
https://doi.org/10.1016/j.pocean.2009.07.032, 2009.
Codispoti, L. A.: Interesting Times for Marine N2O, Science,
332, 1339–1340, 2010.
Cohen, Y. and Gordon, L.: Nitrous oxide in the oxygen minimum of eastern
tropical North Pacific: evidence for its consumption during denitrification
and possble mechanisms for its production, Deep-Sea Res., 25,
509–524, 1978.
Cornejo, M. and Farías, L.: Following the N2O consumption in the oxygen minimum zone of the eastern South Pacific, Biogeosciences, 9, 3205–3212, https://doi.org/10.5194/bg-9-3205-2012, 2012.
Cornejo D'Ottone, M., Bravo, L., Ramos, M., Pizarro, O., Karstensen, J., Gallegos, M., Correa-Ramirez, M., Silva, N., Farias, L., and Karp-Boss, L.: Biogeochemical characteristics of a long-lived anticyclonic eddy in the eastern South Pacific Ocean, Biogeosciences, 13, 2971–2979, https://doi.org/10.5194/bg-13-2971-2016, 2016.
Crutzen, P. J.: The influence of nitrogen oxides on the atmospheric ozone
content, Q. J. Roy. Meteor. Soc., 96, 320–325,
https://doi.org/10.1002/qj.49709640815, 1970.
Dalsgaard, T., Thamdrup, B., Farías, L., Peter Revsbech, N., and
Revsbech, N. P.: Anammox and denitrification in the oxygen minimum zone of
the eastern South Pacific, Limnol. Oceanogr., 57, 1331–1346,
https://doi.org/10.4319/lo.2012.57.5.1331, 2012.
Dalsgaard, T., Stewart, F. J., Thamdrup, B., De Brabandere, L., Revsbech, N.
P., Ulloa, O., Canfield, D. E., and Delong, E. F.: Oxygen at nanomolar levels
reversibly suppresses process rates and gene expression in anammox and
denitrification in the oxygen minimum zone off northern Chile, MBio, 5,
e01966, https://doi.org/10.1128/mBio.01966-14, 2014.
De Brabandere, L., Canfield, D. E., Dalsgaard, T., Friederich, G. E.,
Revsbech, N. P., Ulloa, O., and Thamdrup, B.: Vertical partitioning of
nitrogen-loss processes across the oxic-anoxic interface of an oceanic
oxygen minimum zone, Environ. Microbiol., 16, 3041–3054,
https://doi.org/10.1111/1462-2920.12255, 2014.
Farías, L., Castro-González, M., Cornejo, M., Charpentier, J. J.,
Faúndez, J., Boontanon, N., and Yoshida, N.: Denitrification and nitrous
oxide cycling within the upper oxycline of the eastern tropical South
Pacific oxygen minimum zone, Limnol. Oceanogr., 54, 132–144,
https://doi.org/10.4319/lo.2009.54.1.0132, 2009.
Frame, C. H. and Casciotti, K. L.: Biogeochemical controls and isotopic signatures of nitrous oxide production by a marine ammonia-oxidizing bacterium, Biogeosciences, 7, 2695–2709, https://doi.org/10.5194/bg-7-2695-2010, 2010.
Frame, C. H., Lau, E., Nolan, E. J., Goepfert, T. J., and Lehmann, M. F.:
Acidification Enhances Hybrid N2O Production Associated with Aquatic
Ammonia-Oxidizing Microorganisms, Front. Microbiol., 7, 2104,
https://doi.org/10.3389/fmicb.2016.02104, 2017.
Francis, C. A., Roberts, K. J., Beman, J. M., Santoro, A. E., and Oakley, B.
B.: Ubiquity and diversity of ammonia-oxidizing archaea in water columns and
sediments of the ocean, P. Natl. Acad. Sci. USA, 102, 14683–14688,
https://doi.org/10.1073/pnas.0506625102, 2005.
Frey, C., Bange, H. W., Achterberg, E. P., Jayakumar, A., Löscher, C. R., Arévalo-Martínez, D. L., León-Palmero, E., Sun, M., Sun, X., Xie, R. C., Oleynik, S., and Ward, B. B.: Nitrous oxide production rates in the eastern tropical South Pacific during METEOR cruise M138, PANGAEA, https://doi.org/10.1594/PANGAEA.914948, 2020.
Ganesh, S., Parris, D. J., Delong, E. F., and Stewart, F. J.: Metagenomic
analysis of size-fractionated picoplankton in a marine oxygen minimum zone,
ISME J., 8, 187–211, https://doi.org/10.1038/ismej.2013.144, 2014.
Goreau, T. J., Kaplan, W. A., Wofsy, S. C., McElroy, M. B., Valois, F. W.,
and Watson, S. W.: Production of
Goréguès, C., Michotey, V., and Bonin, P.: Isolation of
hydrocarbonoclastic denitrifying bacteria from berre microbial mats,
Ophelia, 58, 263–270, https://doi.org/10.1080/00785236.2004.10410234, 2004.
Granger, J. and Ward, B. B.: Accumulation of nitrogen oxides in
copper-limited cultures of denitrifying bacteria, Limnol. Oceanogr., 48,
313–318, https://doi.org/10.4319/lo.2003.48.1.0313, 2003.
Hamdan, L. J., Coffin, R. B., Sikaroodi, M., Greinert, J., Treude, T., and
Gillevet, P. M.: Ocean currents shape the microbiome of Arctic marine
sediments, ISME J., 7, 685–696, https://doi.org/10.1038/ismej.2012.143, 2012.
Hammer, Ø., Harper, D. A. T., and Ryan, P. D.: PAST: Paleontological
statistics software package, Palaeontol. Electron., 4, 1–9,
https://doi.org/10.1016/j.bcp.2008.05.025, 2001.
Haskell, W. Z., Kadko, D., Hammond, D. E., Knapp, A. N., Prokopenko, M. G.,
Berelson, W. M., and Capone, D. G.: Upwelling velocity and eddy diffusivity
from 7Be measurements used to compare vertical nutrient flux to export POC
flux in the Eastern Tropical South Pacific, Mar. Chem., 168, 140–150,
https://doi.org/10.1016/J.MARCHEM.2014.10.004, 2015.
Hink, L., Nicol, G. W., and Prosser, J. I.: Archaea produce lower yields of
N2O than bacteria during aerobic ammonia oxidation in soil, Environ.
Microbiol., 19, 4829–4837, https://doi.org/10.1111/1462-2920.13282, 2017a.
Hink, L., Lycus, P., Gubry-Rangin, C., Frostegård, Å., Nicol, G. W.,
Prosser, J. I., and Bakken, L. R.: Kinetics of NH3-oxidation, NO-turnover,
N2O-production and electron flow during oxygen depletion in model
bacterial and archaeal ammonia oxidisers, Environ. Microbiol., 19,
4882–4896, https://doi.org/10.1111/1462-2920.13914, 2017b.
Holmes, R. M., Aminot, A., Kérouel, R., Hooker, B. A., and Peterson, B.
J.: A simple and precise method for measuring ammonium in marine and
freshwater ecosystems, Can. J. Fish. Aquat. Sci., 56, 1802–1808, 1999.
Hu, H., Bourbonnais, A., Larkum, J., Bange, H. W., and Altabet, M. A.: Nitrogen cycling in shallow low-oxygen coastal waters off Peru from nitrite and nitrate nitrogen and oxygen isotopes, Biogeosciences, 13, 1453–1468, https://doi.org/10.5194/bg-13-1453-2016, 2016.
Hu, Z., Wessels, H. J. C. T., Alen, T., Jetten, M. S. M., and Kartal, B.:
Nitric oxide-dependent anaerobic ammonium oxidation, Nat. Commun., 10,
1–7, https://doi.org/10.1038/s41467-019-09268-w, 2019.
Hydes, D., Aoyama, M., Aminot, A., Bakker, K., Becker, S., Coverly, S.,
Daniel, A., Dickson, A. G., Grosso, O., Kerouel, R., van Ooijen, J., Sato,
K., Tanhua, T., Woodward, E. M. S., and Zhang, J. Z.: Determination of
dissolved nutrients (N, P, Si) in seawater with high precision and
inter-comparability using gas-segmented continuous flow analysers, Go-sh.
Repeat Hydrogr. Man. IOCCP Rep., 134, 1–87, 2010.
IPCC: Climate Change 2013: The Physical Science Basis. Contribution of
Working Group I to the Fifth Assessment Report of the Intergovernmental
Panel on Climate Change, Cambridge University Press, Cambridge UK and New
York, USA, 2013.
Jayakumar, A., Peng, X., and Ward, B.: Community composition of bacteria
involved in fixed nitrogen loss in the water column of two major oxygen
minimum zones in the ocean, Aquat. Microb. Ecol., 70, 245–259,
https://doi.org/10.3354/ame01654, 2013.
Jayakumar, D. A., Naqvi, S. W. A., and Ward, B. B.: Distribution and relative
quantification of key genes involved in fixed nitrogen loss from the Arabian
Sea oxygen minimum zone, Indian Ocean Biogeochemcal Process. Ecol. Var., 185,
187–203, 2009.
Jebaraj, C. S., Forster, D., Kauff, F., and Stoeck, T.: Molecular Diversity
of Fungi from Marine Oxygen-Deficient Environments (ODEs), 189–208,
Springer, Berlin, Heidelberg, 2012.
Ji, Q., Babbin, A. R., Peng, X., Bowen, J. L., Ward, B. B., and Ji, Q.:
Nitrogen substrate–dependent nitrous oxide cycling in salt marsh sediments,
J. Mar. Res., 7373, 71–92, 2015a.
Ji, Q., Babbin, A. R., Jayakumar, A., and Ward, B. B.: Nitrous oxide
production by nitrification and denitrification in the Eastern Tropical
South Pacific oxygen minimum zone, Geophys. Res. Lett., 42, 10755–10764,
https://doi.org/10.1002/2015GL066853, 2015b.
Ji, Q., Buitenhuis, E., Suntharalingam, P., Sarmiento, J. L., and Ward, B.
B.: Global nitrous oxide production determined by oxygen sensitivity of
nitrification and denitrification, Global Biogeochem. Cy., 32, 1790–1802, https://doi.org/10.1029/2018GB005887, 2018a.
Ji, Q., Frey, C., Sun, X., Jackson, M., Lee, Y.-S., Jayakumar, A., Cornwell, J. C., and Ward, B. B.: Nitrogen and oxygen availabilities control water column nitrous oxide production during seasonal anoxia in the Chesapeake Bay, Biogeosciences, 15, 6127–6138, https://doi.org/10.5194/bg-15-6127-2018, 2018b.
Johnston, H.: Reduction of Stratospheric Ozone by Nitrogen.Oxide Catalysts
from Supersonic Transport Exhaust, Science, 173, 517–522, 1971.
Kalvelage, T., Jensen, M. M., Contreras, S., Revsbech, N. P., Lam, P.,
Günter, M., LaRoche, J., Lavik, G., and Kuypers, M. M. M. M.: Oxygen
sensitivity of anammox and coupled N-cycle processes in oxygen minimum
zones, PLoS One, 6, e29299, https://doi.org/10.1371/journal.pone.0029299, 2011.
Kalvelage, T., Lavik, G., Jensen, M. M., Revsbech, N. P., Loescher, C.,
Schunck, H., Desai, D. K., Hauss, H., Kiko, R., Holtappels, M., LaRoche, J.,
Schmitz, R. A., Graco, M. I., and Kuypers, M. M. M.: Aerobic Microbial
Respiration In Oceanic Oxygen Minimum Zones, PLoS One, 10, e0133526,
https://doi.org/10.1371/journal.pone.0133526, 2015.
Kartal, B., Kuypers, M. M. M., Lavik, G., Schalk, J., Op den Camp, H. J. M.,
Jetten, M. S. M., and Strous, M.: Anammox bacteria disguised as denitrifiers:
nitrate reduction to dinitrogen gas via nitrite and ammonium, Environ.
Microbiol., 9, 635–642, https://doi.org/10.1111/j.1462-2920.2006.01183.x, 2007.
Klawonn, I., Bonaglia, S., Whitehouse, M. J., Littmann, S., Tienken, D.,
Kuypers, M. M. M., Brüchert, V., and Ploug, H.: Untangling hidden
nutrient dynamics: rapid ammonium cycling and single-cell ammonium
assimilation in marine plankton communities, ISME J., 13, 1960–1974,
https://doi.org/10.1038/s41396-019-0386-z, 2019.
Kock, A. and Bange, H. W.: Counting the ocean's greenhouse gas emissions, EOS (Washington. DC), 96, 10–13, https://doi.org/10.1029/2015EO023665, 2015 (data available at: https://memento.geomar.de/de/n2o, last access: 16 April 2020).
Kock, A., Arévalo-Martínez, D. L., Löscher, C. R., and Bange, H. W.: Extreme N2O accumulation in the coastal oxygen minimum zone off Peru, Biogeosciences, 13, 827–840, https://doi.org/10.5194/bg-13-827-2016, 2016.
Kondo, Y. and Moffett, J. W.: Iron redox cycling and subsurface offshore
transport in the eastern tropical South Pacific oxygen minimum zone, Mar.
Chem., 168, 95–103, https://doi.org/10.1016/J.MARCHEM.2014.11.007, 2015.
Körner, H. and Zumft, W. G.: Expression of denitrification enzymes in
response to the dissolved oxygen level and respiratory substrate in
continuous culture of Pseudomonas stutzeri, Appl. Environ. Microb.,
55, 1670–1676, 1989.
Korth, F., Kock, A., Arévalo-Martínez, D. L., and Bange, H. W.:
Hydroxylamine as a Potential Indicator of Nitrification in the Open Ocean,
Geophys. Res. Lett., 46, 2158–2166, https://doi.org/10.1029/2018GL080466, 2019.
Kozlowski, J. A., Stieglmeier, M., Schleper, C., Klotz, M. G., and Stein, L.
Y.: Pathways and key intermediates required for obligate aerobic
ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota, ISME J.,
10, 1–10, https://doi.org/10.1038/ismej.2016.2, 2016.
Lam, P., Lavik, G., Jensen, M. M., van de Vossenberg, J., Schmid, M., Woebken,
D., Gutiérrez, D., Amann, R., Jetten, M. S. M., and Kuypers, M. M. M.:
Revising the nitrogen cycle in the Peruvian oxygen minimum zone, P. Natl.
Acad. Sci. USA, 106, 4752–4757, 2009.
Lancaster, K. M., Caranto, J. D., Majer, S. H., and Smith, M. A.: Alternative
Bioenergy?: Updates to and Challenges in Nitrification Metalloenzymology,
Joule, 2, 421–441, https://doi.org/10.1016/j.joule.2018.01.018, 2018.
Landolfi, A., Somes, C. J., Koeve, W., Zamora, L. M., and Oschlies, A.:
Oceanic nitrogen cycling and N2O flux perturbations in the
Anthropocene, Global Biogeochem. Cy., 31, 1236–1255,
https://doi.org/10.1002/2017GB005633, 2017.
Larsen, M., Lehner, P., Borisov, S. M., Klimant, I., Fischer, J. P.,
Stewart, F. J., Canfield, D. E., and Glud, R. N.: In situ quantification of
ultra-low O2 concentrations in oxygen minimum zones: Application of
novel optodes, Limnol. Oceanogr.-Meth., 14, 784–800,
https://doi.org/10.1002/lom3.10126, 2016.
Legendre, P. and Legendre, L.: Numerical ecology, Elsevier, New York, NY,
USA, 2012.
Liu, Z., Stewart, G., Kirk Cochran, J., Lee, C., Armstrong, R. A.,
Hirschberg, D. J., Gasser, B., and Miquel, J.-C.: Why do POC concentrations
measured using Niskin bottle collections sometimes differ from those using
in-situ pumps?, Deep-Sea Res. Pt. I, 52, 1324–1344,
https://doi.org/10.1016/J.DSR.2005.02.005, 2005.
Löscher, C. R., Kock, A., Könneke, M., LaRoche, J., Bange, H. W., and Schmitz, R. A.: Production of oceanic nitrous oxide by ammonia-oxidizing archaea, Biogeosciences, 9, 2419–2429, https://doi.org/10.5194/bg-9-2419-2012, 2012.
Löscher, C. R., Bange, H. W., Schmitz, R. A., Callbeck, C. M., Engel, A., Hauss, H., Kanzow, T., Kiko, R., Lavik, G., Loginova, A., Melzner, F., Meyer, J., Neulinger, S. C., Pahlow, M., Riebesell, U., Schunck, H., Thomsen, S., and Wagner, H.: Water column biogeochemistry of oxygen minimum zones in the eastern tropical North Atlantic and eastern tropical South Pacific oceans, Biogeosciences, 13, 3585–3606, https://doi.org/10.5194/bg-13-3585-2016, 2016.
Lutterbeck, H. E., Arévalo-Martínez, D. L., Löscher, C. R., and
Bange, H. W.: Nitric oxide (NO) in the oxygen minimum zone off Peru, Deep-Sea Res. Pt. II, 156, 148–154,
https://doi.org/10.1016/j.dsr2.2017.12.023, 2018.
Martin, J. H., Knauer, G. A., Karl, D. M., and Broenkow, W. W.: VERTEX:
carbon cycling in the northeast Pacific, Deep-Sea Res. Pt. A, 34, 267–285, https://doi.org/10.1016/0198-0149(87)90086-0, 1987.
Martinez-Rey, J., Bopp, L., Gehlen, M., Tagliabue, A., and Gruber, N.: Projections of oceanic N2O emissions in the 21st century using the IPSL Earth system model, Biogeosciences, 12, 4133–4148, https://doi.org/10.5194/bg-12-4133-2015, 2015.
McGillicuddy Jr., D. J., Anderson, L. A., Bates, N. R., Bibby, T., Buesseler, K. O.,
Carlson, C. A., Davis, C. S., Ewart, C., Falkowski, P. G., Goldthwait, S.
A., Hansell, D. A., Jenkins, W. J., Johnson, R., Kosnyrev, V. K., Ledwell,
J. R., Li, Q. P., Siegel, D. A., and Steinberg, D. K.: Eddy/Wind
Interactions Stimulate Extraordinary Mid-Ocean Plankton Blooms, Science, 316, 1021–1026, https://doi.org/10.1126/science.1136256, 2007.
McIlvin, M. R. and Altabet, M. A.: Chemical Conversion of Nitrate and
Nitrite to Nitrous Oxide for Nitrogen and Oxygen Isotopic Analysis in
Freshwater and Seawater, Anal. Chem., 77, 5589–5595, 2005.
McKenney, D. J., Drury, C. F., Findlay, W. I., Mutus, B., McDonnell, T., and
Gajda, C.: Kinetics of denitrification by Pseudomonas fluorescens: Oxygen
effects, Soil Biol. Biochem., 26, 901–908, 1994.
Messié, M. and Chavez, F. P.: Seasonal regulation of primary production
in eastern boundary upwelling systems, Prog. Oceanogr., 134, 1–18,
https://doi.org/10.1016/j.pocean.2014.10.011, 2015.
Mincer, T. J., Church, M. J., Taylor, L. T., Preston, C., Karl, D. M., and
DeLong, E. F.: Quantitative distribution of presumptive archaeal and
bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre,
Environ. Microbiol., 9, 1162–1175, https://doi.org/10.1111/j.1462-2920.2007.01239.x,
2007.
Murdock, S. A. and Juniper, S. K.: Capturing Compositional Variation in
Denitrifying Communities: a Multiple-Primer Approach That Includes
Epsilonproteobacteria, Appl. Environ. Microb., 83, 1–16, 2017.
NCBI: Gene Expression Omnibus, available at: http://www.ncbi.nlm.nih.gov/geo/, last access: 16 April 2020.
Newell, S. E., Babbin, A. R., Jayakumar, A., and Ward, B. B.: Ammonia
oxidation rates and nitrification in the Arabian Sea, Global Biogeochem.
Cy., 25, 1–10, https://doi.org/10.1029/2010gb003940, 2011.
Nicholls, J. C., Davies, C. A., and Trimmer, M.: High-resolution profiles and
nitrogen isotope tracing reveal a dominant source of nitrous oxide and
multiple pathways of nitrogen gas formation in the central Arabian Sea,
Limnol. Oceanogr., 52, 156–168, https://doi.org/10.4319/lo.2007.52.1.0156, 2007.
Oksanen, J., Blanchet, F. G., Friendly, M., Kindt, R., Legendre, P.,
Mcglinn, D., Minchin, P. R., O'Hara, R. B., Simpson, G. L., Solymos, P.,
Henry, M., Stevens, H., Szoecs, E., and Maintainer, H. W.: Package “vegan”
Title Community Ecology Package, Community Ecol. Packag., 2, 1–297,
2019.
Peng, X., Jayakumar, A., and Ward, B. B.: Community composition of
ammonia-oxidizing archaea from surface and anoxic depths of oceanic oxygen
minimum zones, Front. Microbiol., 4, 1–12,
https://doi.org/10.3389/fmicb.2013.00177, 2013.
Pietri, A., Testor, P., Echevin, V., Chaigneau, A., Mortier, L., Eldin, G.,
Grados, C., Pietri, A., Testor, P., Echevin, V., Chaigneau, A., Mortier, L.,
Eldin, G., and Grados, C.: Finescale Vertical Structure of the Upwelling
System off Southern Peru as Observed from Glider Data, J. Phys. Oceanogr.,
43, 631–646, https://doi.org/10.1175/JPO-D-12-035.1, 2013.
Qin, W., Meinhardt, K. A., Moffett, J. W., Devol, A. H., Armbrust, E. V.,
Ingalls, A. E., and Stahl, D. A.: Influence of Oxygen Availability on the
Activities of Ammonia-oxidizing Archaea, Env. Microbiol. Rep., 9, 250–256,
https://doi.org/10.1111/1758-2229.12525, 2017.
Ravishankara, A. R., Daniel, J. S., and Portmann, R. W.: Nitrous oxide
(N2O): the dominant ozone-depleting substance emitted in the 21st
century, Science, 326, 123–125, https://doi.org/10.1126/science.1176985, 2009.
Richards, T. A., Jones, M. D. M., Leonard, G., and Bass, D.: Marine Fungi:
Their Ecology and Molecular Diversity, Annu. Rev. Mar. Sci., 4, 495–522,
https://doi.org/10.1146/annurev-marine-120710-100802, 2012.
Santoro, A. E. and Casciotti, K. L.: Enrichment and characterization of
ammonia-oxidizing archaea from the open ocean: phylogeny, physiology and
stable isotope fractionation, ISME J., 5, 1796–808,
https://doi.org/10.1038/ismej.2011.58, 2011.
Santoro, A. E., Casciotti, K. L., and Francis, C. A.: Activity, abundance and
diversity of nitrifying archaea and bacteria in the central California
Current, Environ. Microbiol., 12, 1989–2006,
https://doi.org/10.1111/j.1462-2920.2010.02205.x, 2010.
Santoro, A. E., Buchwald, C., McIlvin, M. R., and Casciotti, K. L.: Isotopic
Signature of N2O Produced by Marine Ammonia-Oxidizing Archaea, Science, 333, 1282–1285, https://doi.org/10.1126/science.1208239, 2011.
Santoro, A. E., Dupont, C. L., Richter, R. A., Craig, M. T., Carini, P.,
McIlvin, M. R., Yang, Y., Orsi, W. D., Moran, D. M., and Saito, M. A.:
Genomic and proteomic characterization of “Candidatus Nitrosopelagicus
brevis”: An ammonia-oxidizing archaeon from the open ocean, P. Natl.
Acad. Sci. USA, 112, 1173–1178, https://doi.org/10.1073/PNAS.1416223112, 2015.
Schmidtko, S., Stramma, L., and Visbeck, M.: Decline in global oceanic oxygen
content during the past five decades, Nature, 542, 335–339,
https://doi.org/10.1038/nature21399, 2017.
Schunck, H., Lavik, G., Desai, D. K., Großkopf, T., Kalvelage, T.,
Löscher, C. R., Paulmier, A., Contreras, S., Siegel, H., Holtappels, M.,
Rosenstiel, P., Schilhabel, M. B., Graco, M., Schmitz, R. A., Kuypers, M. M.
M., and Laroche, J.: Giant hydrogen sulfide plume in the oxygen minimum zone
off Peru supports chemolithoautotrophy, PLoS One, 8, e68661,
https://doi.org/10.1371/journal.pone.0068661, 2013.
Segata, N., Izard, J., Waldron, L., Gevers, D., Miropolsky, L., Garrett, W.
S., and Huttenhower, C.: Metagenomic biomarker discovery and explanation,
Genome Biol., 12, R60, https://doi.org/10.1186/gb-2011-12-6-r60, 2011.
Shoun, H., Fushinobu, S., Jiang, L., Kim, S. W., and Wakagi, T.: Fungal
denitrification and nitric oxide reductase cytochrome P450nor, P.
T. Roy. Soc. B, 367, 1186–1194,
https://doi.org/10.1098/rstb.2011.0335, 2012.
Sigman, D. M., Casciotti, K. L., Andreani, M., Barford, C., Galanter, M., and
Böhlke, J. K.: A Bacterial Method for the Nitrogen Isotopic Analysis of
Nitrate in Seawater and Freshwater, Anal. Chem., 73, 4145–4153, 2001.
Stein, L. Y.: Insights into the physiology of ammonia-oxidizing
microorganisms, Curr. Opin. Chem. Biol., 49, 9–15,
https://doi.org/10.1016/J.CBPA.2018.09.003, 2019.
Stewart, F. J., Ulloa, O., and Delong, E. F.: Microbial metatranscriptomics
in a permanent marine oxygen minimum zone, Environ. Microbiol., 14,
23–40, https://doi.org/10.1111/j.1462-2920.2010.02400.x, 2011.
Stewart, F. J., Dalsgaard, T., Young, C. R., Thamdrup, B., Revsbech, N. P.,
Ulloa, O., Canfield, D. E., and Delong, E. F.: Experimental incubations
elicit profound changes in community transcription in OMZ bacterioplankton,
PLoS One, 7, e37118, https://doi.org/10.1371/journal.pone.0037118, 2012.
Stieglmeier, M., Mooshammer, M., Kitzler, B., Wanek, W.,
Zechmeister-Boltenstern, S., Richter, A., and Schleper, C.: Aerobic nitrous
oxide production through N-nitrosating hybrid formation in ammonia-oxidizing
archaea, ISME J., 8, 1135–46, https://doi.org/10.1038/ismej.2013.220, 2014.
Stramma, L., Johnson, G. C., Sprintall, J., and Mohrholz, V.: Expanding
Oxygen-Minimum Zones in the Tropical Oceans, Science, 320,
655–659, 2008.
Stramma, L., Bange, H. W., Czeschel, R., Lorenzo, A., and Frank, M.: On the role of mesoscale eddies for the biological productivity and biogeochemistry in the eastern tropical Pacific Ocean off Peru, Biogeosciences, 10, 7293–7306, https://doi.org/10.5194/bg-10-7293-2013, 2013.
Sun, X., Ji, Q., Jayakumar, A., and Ward, B. B.: Dependence of nitrite
oxidation on nitrite and oxygen in low-oxygen seawater, Geophys. Res. Lett.,
44, 7883–7891, https://doi.org/10.1002/2017GL074355, 2017.
Swan, B. K., Martinez-Garcia, M., Preston, C. M., Sczyrba, A., Woyke, T.,
Lamy, D., Reinthaler, T., Poulton, N. J., Masland, E. D. P., Gomez, M. L.,
Sieracki, M. E., DeLong, E. F., Herndl, G. J., and Stepanauskas, R.:
Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the
dark ocean, Science, 333, 1296–1300,
https://doi.org/10.1126/science.1203690, 2011.
Thamdrup, B. and Dalsgaard, T.: Production of N2 through Anaerobic Ammonium
Oxidation Coupled to Nitrate Reduction in Marine Sediments, Appl. Environ.
Microb., 68, 1312–1318, https://doi.org/10.1128/aem.68.3.1312-1318.2002, 2002.
Tiano, L., Garcia-Robledo, E., Dalsgaard, T., Devol, A. H., Ward, B. B.,
Ulloa, O., Canfield, D. E., and Revsbech, N. P.: Oxygen distribution and
aerobic respiration in the north and south eastern tropical Pacific oxygen
minimum zones, Deep-Sea Res. Pt. I, 94, 173–183,
https://doi.org/10.1016/j.dsr.2014.10.001, 2014.
Torres-Beltrán, M., Mueller, A., Scofield, M., Pachiadaki, M. G.,
Taylor, C., Tyshchenko, K., Michiels, C., Lam, P., Ulloa, O., Jürgens,
K., Hyun, J. H., Edgcomb, V. P., Crowe, S. A., and Hallam, S. J.: Sampling
and processing methods impact microbial community structure and potential
activity in a seasonally anoxic fjord: Saanich inlet, British Columbia,
Front. Mar. Sci., 6, 1–16, https://doi.org/10.3389/fmars.2019.00132, 2019.
Trimmer, M., Chronopoulou, P.-M., Maanoja, S. T., Upstill-Goddard, R. C.,
Kitidis, V., and Purdy, K. J.: Nitrous oxide as a function of oxygen and
archaeal gene abundance in the North Pacific, Nat. Commun., 7, 13451,
https://doi.org/10.1038/ncomms13451, 2016.
Vajrala, N., Martens-Habbena, W., Sayavedra-Soto, L. A., Schauer, A.,
Bottomley, P. J., Stahl, D. A., and Arp, D. J.: Hydroxylamine as an
intermediate in ammonia oxidation by globally abundant marine archaea, P.
Natl. Acad. Sci. USA, 110, 1006–1011, https://doi.org/10.1073/pnas.1214272110, 2013.
Van Der Star, W. R. L., Van De Graaf, M. J., Kartal, B., Picioreanu, C.,
Jetten, M. S. M., and Van Loosdrecht, M. C. M.: Response of anaerobic
ammonium-oxidizing bacteria to hydroxylamine, Appl. Environ. Microb.,
74, 4417–4426, https://doi.org/10.1128/AEM.00042-08, 2008.
Wankel, S. D., Ziebis, W., Buchwald, C., Charoenpong, C., De Beer, Di.,
Dentinger, J., Xu, Z., and Zengler, K.: Evidence for fungal and
chemodenitrification based N2O flux from nitrogen impacted coastal
sediments, Nat. Commun., 8, 1–11, https://doi.org/10.1038/ncomms15595, 2017.
Ward, B. B. and Bouskill, N. J.: The utility of functional gene arrays for
assessing
community composition, relative abundance, and distribution of ammonia-oxidizing bacteria and archaea, in: Methods in
Enzymology, Vol. 496, 373–396, Academic Press Inc., 2011.
Ward, B. B., Tuit, C. B., Jayakumar, A., Rich, J. J., Moffett, J., and Naqvi,
S. W. A.: Organic carbon, and not copper, controls denitrification in oxygen
minimum zones of the ocean, Deep-Sea Res. Pt. I, 55,
1672–1683, https://doi.org/10.1016/j.dsr.2008.07.005, 2008.
Weier, K. L., Doran, J. W., Power, J. F., and Walters, D. T.: Denitrification
and the Dinitrogen/Nitrous Oxide Ratio as Affected by Soil Water, Available
Carbon, and Nitrate, Soil Sci. Soc. Am. J., 57, 66–72,
https://doi.org/10.2136/sssaj1993.03615995005700010013x, 1993.
Weigand, M. A., Foriel, J., Barnett, B., Oleynik, S., and Sigman, D. M.:
Updates to instrumentation and protocols for isotopic analysis of nitrate by
the denitrifier method, Rapid Commun. Mass Sp., 30, 1365–1383,
https://doi.org/10.1002/rcm.7570, 2016.
Wright, J. J., Konwar, K. M., and Hallam, S. J.: Microbial ecology of
expanding oxygen minimum zones, Nat. Rev. Microbiol., 10, 381–394,
https://doi.org/10.1038/nrmicro2778, 2012.
Wuchter, C., Abbas, B., Coolen, M. J. L., Herfort, L., van Bleijswijk, J.,
Timmers, P., Strous, M., Teira, E., Herndl, G. J., Middelburg, J. J.,
Schouten, S., and Sinninghe Damsté, J. S.: Archaeal nitrification in the
ocean, P. Natl. Acad. Sci. USA, 103, 12317–12322,
https://doi.org/10.1073/pnas.0600756103, 2006.
Yang, S., Gruber, N., Long, M. C., and Vogt, M.: High ENSO driven variability
of denitrification and suboxia in the Eastern Pacific Ocean, Global
Biogeochem. Cy., 31, 1470–1487, https://doi.org/10.1002/2016GB005596, 2017.
Yoshida, N.: 15N-depleted N2O as a product of nitrification,
Nature, 335, 528–529, https://doi.org/10.1038/335528a0, 1988.
Zhou, Z., Takaya, N., Sakairi, M. A. C., and Shoun, H.: Oxygen requirement
for denitrification by the fungus Fusarium oxysporum, Arch. Microbiol.,
175, 19–25, https://doi.org/10.1007/s002030000231, 2001.
Zhu-Barker, X., Cavazos, A. R., Ostrom, N. E., Horwath, W. R., and Glass, J.
B.: The importance of abiotic reactions for nitrous oxide production,
Biogeochemistry, 126, 251–267, https://doi.org/10.1007/s10533-015-0166-4, 2015.
Zumft, W. G.: Cell biology and molecular basis of denitrification,
Microbiol. Mol. Biol. Rev., 61, 533–616, 1997.
Short summary
The production of N2O via nitrification and denitrification associated with low-O2 waters is a major source of oceanic N2O. We investigated the regulation and dynamics of these processes with respect to O2 and organic matter inputs. The transcription of the key nitrification gene amoA rapidly responded to changes in O2 and strongly correlated with N2O production rates. N2O production by denitrification was clearly stimulated by organic carbon, implying that its supply controls N2O production.
The production of N2O via nitrification and denitrification associated with low-O2 waters is a...
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