Articles | Volume 21, issue 13
https://doi.org/10.5194/bg-21-3201-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-21-3201-2024
© Author(s) 2024. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
12 Jul 2024
Research article |
| 12 Jul 2024
| 12 Jul 2024
High interspecific variability in ice nucleation activity suggests pollen ice nucleators are incidental
Nina L. H. Kinney
CORRESPONDING AUTHOR
Department of Chemistry, University of Warwick, Coventry, CV4 7AL, UK
Trait Diversity and Function, Royal Botanic Gardens Kew, Ardingly, West Sussex, RH17 6TN, UK
Charles A. Hepburn
Mathematics Institute, University of Warwick, Coventry, CV4 7AL, UK
Matthew I. Gibson
Department of Chemistry, University of Warwick, Coventry, CV4 7AL, UK
Division of Biomedical Sciences, Warwick Medical School, University of Warwick, Coventry, CV4 7AL, UK
Department of Chemistry, University of Manchester, Manchester, M13 9PL, UK
Manchester Institute of Biotechnology, University of Manchester, Manchester, M1 7DN, UK
Daniel Ballesteros
Trait Diversity and Function, Royal Botanic Gardens Kew, Ardingly, West Sussex, RH17 6TN, UK
Department of Botany and Geology, University of Valencia, 46100 Burjassot, Valencia, Spain
Thomas F. Whale
Department of Chemistry, University of Warwick, Coventry, CV4 7AL, UK
School of Earth and Environment, University of Leeds, Leeds, LS2 9JT, UK
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Martin I. Daily, Mark D. Tarn, Thomas F. Whale, and Benjamin J. Murray
Atmos. Meas. Tech., 15, 2635–2665, https://doi.org/10.5194/amt-15-2635-2022, https://doi.org/10.5194/amt-15-2635-2022, 2022
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Mineral dust and particles of biological origin are important types of ice-nucleating particles (INPs) that can trigger ice formation of supercooled cloud droplets. Heat treatments are used to detect the presence of biological INPs in samples collected from the environment as the activity of mineral INPs is assumed unchanged, although not fully assessed. We show that the ice-nucleating ability of some minerals can change after heating and discuss how INP heat tests should be interpreted.
Alexander D. Harrison, Katherine Lever, Alberto Sanchez-Marroquin, Mark A. Holden, Thomas F. Whale, Mark D. Tarn, James B. McQuaid, and Benjamin J. Murray
Atmos. Chem. Phys., 19, 11343–11361, https://doi.org/10.5194/acp-19-11343-2019, https://doi.org/10.5194/acp-19-11343-2019, 2019
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Mineral dusts are a source of ice-nucleating particles (INPs) in the atmosphere. Here we present a comprehensive survey of the ice-nucleating ability of naturally occurring quartz. We show the ice-nucleating variability of quartz and its sensitivity to time spent in water and air. We propose four new parameterizations for the minerals quartz, K feldspar, albite and plagioclase to predict INP concentrations in the atmosphere and show that K-feldspar is the dominant INP type in mineral dusts.
Elena C. Maters, Donald B. Dingwell, Corrado Cimarelli, Dirk Müller, Thomas F. Whale, and Benjamin J. Murray
Atmos. Chem. Phys., 19, 5451–5465, https://doi.org/10.5194/acp-19-5451-2019, https://doi.org/10.5194/acp-19-5451-2019, 2019
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This experimental study investigates the influence of volcanic ash chemical composition, crystallinity, and mineralogy on its ability to promote freezing of supercooled water. The results indicate that crystals in ash play a key role in this process and suggest that feldspars and perhaps pyroxenes in ash may be highly ice-active. These findings contribute to improving understanding of the potential of ash emissions from different explosive eruptions to impact ice formation in the atmosphere.
Naruki Hiranuma, Kouji Adachi, David M. Bell, Franco Belosi, Hassan Beydoun, Bhaskar Bhaduri, Heinz Bingemer, Carsten Budke, Hans-Christian Clemen, Franz Conen, Kimberly M. Cory, Joachim Curtius, Paul J. DeMott, Oliver Eppers, Sarah Grawe, Susan Hartmann, Nadine Hoffmann, Kristina Höhler, Evelyn Jantsch, Alexei Kiselev, Thomas Koop, Gourihar Kulkarni, Amelie Mayer, Masataka Murakami, Benjamin J. Murray, Alessia Nicosia, Markus D. Petters, Matteo Piazza, Michael Polen, Naama Reicher, Yinon Rudich, Atsushi Saito, Gianni Santachiara, Thea Schiebel, Gregg P. Schill, Johannes Schneider, Lior Segev, Emiliano Stopelli, Ryan C. Sullivan, Kaitlyn Suski, Miklós Szakáll, Takuya Tajiri, Hans Taylor, Yutaka Tobo, Romy Ullrich, Daniel Weber, Heike Wex, Thomas F. Whale, Craig L. Whiteside, Katsuya Yamashita, Alla Zelenyuk, and Ottmar Möhler
Atmos. Chem. Phys., 19, 4823–4849, https://doi.org/10.5194/acp-19-4823-2019, https://doi.org/10.5194/acp-19-4823-2019, 2019
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A total of 20 ice nucleation measurement techniques contributed to investigate the immersion freezing behavior of cellulose particles – natural polymers. Our data showed several types of cellulose are able to nucleate ice as efficiently as some mineral dust samples and cellulose has the potential to be an important atmospheric ice-nucleating particle. Continued investigation/collaboration is necessary to obtain further insight into consistency or diversity of ice nucleation measurements.
Paul J. DeMott, Ottmar Möhler, Daniel J. Cziczo, Naruki Hiranuma, Markus D. Petters, Sarah S. Petters, Franco Belosi, Heinz G. Bingemer, Sarah D. Brooks, Carsten Budke, Monika Burkert-Kohn, Kristen N. Collier, Anja Danielczok, Oliver Eppers, Laura Felgitsch, Sarvesh Garimella, Hinrich Grothe, Paul Herenz, Thomas C. J. Hill, Kristina Höhler, Zamin A. Kanji, Alexei Kiselev, Thomas Koop, Thomas B. Kristensen, Konstantin Krüger, Gourihar Kulkarni, Ezra J. T. Levin, Benjamin J. Murray, Alessia Nicosia, Daniel O'Sullivan, Andreas Peckhaus, Michael J. Polen, Hannah C. Price, Naama Reicher, Daniel A. Rothenberg, Yinon Rudich, Gianni Santachiara, Thea Schiebel, Jann Schrod, Teresa M. Seifried, Frank Stratmann, Ryan C. Sullivan, Kaitlyn J. Suski, Miklós Szakáll, Hans P. Taylor, Romy Ullrich, Jesus Vergara-Temprado, Robert Wagner, Thomas F. Whale, Daniel Weber, André Welti, Theodore W. Wilson, Martin J. Wolf, and Jake Zenker
Atmos. Meas. Tech., 11, 6231–6257, https://doi.org/10.5194/amt-11-6231-2018, https://doi.org/10.5194/amt-11-6231-2018, 2018
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The ability to measure ice nucleating particles is vital to quantifying their role in affecting clouds and precipitation. Methods for measuring droplet freezing were compared while co-sampling relevant particle types. Measurement correspondence was very good for ice nucleating particles of bacterial and natural soil origin, and somewhat more disparate for those of mineral origin. Results reflect recently improved capabilities and provide direction toward addressing remaining measurement issues.
Alexander D. Harrison, Thomas F. Whale, Rupert Rutledge, Stephen Lamb, Mark D. Tarn, Grace C. E. Porter, Michael P. Adams, James B. McQuaid, George J. Morris, and Benjamin J. Murray
Atmos. Meas. Tech., 11, 5629–5641, https://doi.org/10.5194/amt-11-5629-2018, https://doi.org/10.5194/amt-11-5629-2018, 2018
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The detection of low concentrations of ice-nucleating particles (INPs) is challenging. Here we present a new technique (IR-NIPI) that is sensitive to low concentrations of INPs (> 0.01 L−1) and uses an infrared camera with a novel calibration to detect the freezing of experimental suspensions. IR-NIPI temperature measurements prove to be robust with a series of comparisons to thermocouple measurements. Experimental comparisons to other freezing assay instruments are also in agreement.
Alexander D. James, James S. A. Brooke, Thomas P. Mangan, Thomas F. Whale, John M. C. Plane, and Benjamin J. Murray
Atmos. Chem. Phys., 18, 4519–4531, https://doi.org/10.5194/acp-18-4519-2018, https://doi.org/10.5194/acp-18-4519-2018, 2018
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Crystal nucleation in polar stratospheric clouds (PSCs) has a direct impact on stratospheric chemistry and ozone. However, the mechanism of nucleation has been unclear for decades, limiting prediction of the response of ozone to atmospheric changes. We experimentally demonstrate that meteoric material can trigger nucleation heterogeneously and this can produce observed crystal concentrations in PSCs. This discovery paves the way to robust modelling of past and future trends in PSCs and ozone.
Alexander D. Harrison, Thomas F. Whale, Michael A. Carpenter, Mark A. Holden, Lesley Neve, Daniel O'Sullivan, Jesus Vergara Temprado, and Benjamin J. Murray
Atmos. Chem. Phys., 16, 10927–10940, https://doi.org/10.5194/acp-16-10927-2016, https://doi.org/10.5194/acp-16-10927-2016, 2016
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Mineral dust particles are known to act as effective ice nucleating particles in the atmosphere and to play a role in the glaciation of mixed phase clouds. We have measured the ice nucleation activity of 15 different feldspar samples using a droplet freezing experiment and shown that alkali feldspars nucleate ice much more efficiently than plagioclase feldspars. We have also shown that certain "hyper-active" alkali feldspars nucleate ice very efficiently compared to typical alkali feldspars.
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Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
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Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
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This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
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Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
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Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
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Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
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As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
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For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
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We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
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Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
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Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
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Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
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We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
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A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
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The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
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Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
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This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
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To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
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This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
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This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
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We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
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We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
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Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
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Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Junqi Wei, Xiaoyan Li, Lei Liu, Torben Røjle Christensen, Zhiyun Jiang, Yujun Ma, Xiuchen Wu, Hongyun Yao, and Efrén López-Blanco
Biogeosciences, 19, 861–875, https://doi.org/10.5194/bg-19-861-2022, https://doi.org/10.5194/bg-19-861-2022, 2022
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Although water availability has been linked to the response of ecosystem carbon (C) sink–source to climate warming, the mechanisms by which C uptake responds to soil moisture remain unclear. We explored how soil water and other environmental drivers modulate net C uptake in an alpine swamp meadow. Results reveal that nearly saturated soil conditions during warm seasons can help to maintain lower ecosystem respiration and therefore enhance the C sequestration capacity in this alpine swamp meadow.
Martijn M. T. A. Pallandt, Jitendra Kumar, Marguerite Mauritz, Edward A. G. Schuur, Anna-Maria Virkkala, Gerardo Celis, Forrest M. Hoffman, and Mathias Göckede
Biogeosciences, 19, 559–583, https://doi.org/10.5194/bg-19-559-2022, https://doi.org/10.5194/bg-19-559-2022, 2022
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Thawing of Arctic permafrost soils could trigger the release of vast amounts of carbon to the atmosphere, thus enhancing climate change. Our study investigated how well the current network of eddy covariance sites to monitor greenhouse gas exchange at local scales captures pan-Arctic flux patterns. We identified large coverage gaps, e.g., in Siberia, but also demonstrated that a targeted addition of relatively few sites can significantly improve network performance.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, and Christian Brümmer
Biogeosciences, 19, 389–413, https://doi.org/10.5194/bg-19-389-2022, https://doi.org/10.5194/bg-19-389-2022, 2022
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Fluxes of total reactive nitrogen (∑Nr) over a low polluted forest were analyzed with regard to their temporal dynamics. Mostly deposition was observed with median fluxes ranging from −15 to −5 ng N m−2 s−1, corresponding to a range of deposition velocities from 0.2 to 0.5 cm s−1. While seasonally changing contributions of NH3 and NOx to the ∑Nr signal were found, we estimate an annual total N deposition (dry+wet) of 12.2 and 10.9 kg N ha−1 a−1 in the 2 years of observation.
Thomas M. Blattmann
Biogeosciences, 19, 359–373, https://doi.org/10.5194/bg-19-359-2022, https://doi.org/10.5194/bg-19-359-2022, 2022
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This work enunciates the possibility of kerogen oxidation contributing to atmospheric CO2 increase in the wake of glacial episodes. This hypothesis is substantiated by several lines of independent evidence synthesized in this contribution. The author hypothesizes that the deglaciation of kerogen-rich lithologies in western Canada contributed to the characteristic deglacial increase in atmospheric CO2.
Juliana Gil-Loaiza, Joseph R. Roscioli, Joanne H. Shorter, Till H. M. Volkmann, Wei-Ren Ng, Jordan E. Krechmer, and Laura K. Meredith
Biogeosciences, 19, 165–185, https://doi.org/10.5194/bg-19-165-2022, https://doi.org/10.5194/bg-19-165-2022, 2022
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We evaluated a new diffusive soil probe integrated with high-resolution gas analyzers to measure soil gases in real time at a centimeter scale. Using columns with simple silica and soil, we captured changes in carbon dioxide (CO2), volatile organic compounds (VOCs), and nitrous oxide (N2O) with its isotopes to distinguish potential nutrient sources and microbial metabolism. This approach will advance the use of soil gases as important signals to understand and monitor soil fertility and health.
Yujie Wang and Christian Frankenberg
Biogeosciences, 19, 29–45, https://doi.org/10.5194/bg-19-29-2022, https://doi.org/10.5194/bg-19-29-2022, 2022
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Modeling vegetation canopy is important in predicting whether the land remains a carbon sink to mitigate climate change in the near future. Vegetation canopy model complexity, however, impacts the model-predicted carbon and water fluxes as well as canopy fluorescence, even if the same suite of model inputs is used. Given the biases caused by canopy model complexity, we recommend not misusing parameters inverted using different models or assumptions.
Håkan Pleijel, Jenny Klingberg, Michelle Nerentorp, Malin C. Broberg, Brigitte Nyirambangutse, John Munthe, and Göran Wallin
Biogeosciences, 18, 6313–6328, https://doi.org/10.5194/bg-18-6313-2021, https://doi.org/10.5194/bg-18-6313-2021, 2021
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Mercury is a problematic metal in the environment. It is crucial to understand the Hg circulation in ecosystems. We explored the mercury concentration in foliage from a diverse set of plants, locations and sampling periods to study the accumulation of Hg in leaves–needles over time. Mercury was always higher in older tissue: in broadleaved trees, conifers and wheat. Specific leaf area, the leaf area per unit leaf mass, turned out to be critical for Hg accumulation in leaves–needles.
Julia Burkart, Jürgen Gratzl, Teresa M. Seifried, Paul Bieber, and Hinrich Grothe
Biogeosciences, 18, 5751–5765, https://doi.org/10.5194/bg-18-5751-2021, https://doi.org/10.5194/bg-18-5751-2021, 2021
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Extracts of birch pollen grains are known to be ice nucleation active and thus impact cloud formation and climate. In this study we develop an extraction method to separate subpollen particles from ice nucleating macromolecules. Our results thereby illustrate that ice nucleating macromolecules can be washed off the subpollen particles and that the ice activity is linked to the presence of proteins.
Cited articles
Ambroise, V., Legay, S., Guerriero, G., Hausman, J. F., Cuypers, A., and Sergeant, K.: The Roots of Plant Frost Hardiness and Tolerance, Plant Cell Physiol., 61, 3–20, https://doi.org/10.1093/PCP/PCZ196, 2020.
Augustin, S., Wex, H., Niedermeier, D., Pummer, B., Grothe, H., Hartmann, S., Tomsche, L., Clauss, T., Voigtländer, J., Ignatius, K., and Stratmann, F.: Immersion freezing of birch pollen washing water, Atmos. Chem. Phys., 13, 10989–11003, https://doi.org/10.5194/acp-13-10989-2013, 2013.
Bell, C. D., Soltis, D. E., and Soltis, P. S.: The age and diversification of the angiosperms re-revisited, Am. J. Bot., 97, 1296–1303, https://doi.org/10.3732/AJB.0900346, 2010.
Bessey, C. E.: Remarkable fall of pine pollen, Am. Nat., 17, 658–658, https://doi.org/10.1086/273405, 1883.
Brush, R. A., Griffith, M., and Mlynarz, A.: Characterization and Quantification of lntrinsic Ice Nucleators in Winter Rye (Secale cereale) Leaves', Plant Physiol., 104, 725–735, 1994.
Burkart, J., Gratzl, J., Seifried, T. M., Bieber, P., and Grothe, H.: Isolation of subpollen particles (SPPs) of birch: SPPs are potential carriers of ice nucleating macromolecules, Biogeosciences, 18, 5751–5765, https://doi.org/10.5194/bg-18-5751-2021, 2021.
Cornwell, G. C., McCluskey, C. S., Hill, T. C. J., Levin, E. T., Rothfuss, N. E., Tai, S.-L., Petters, M. D., DeMott, P. J., Kreidenweis, S., Prather, K. A., and Burrows, S. M.: Bioaerosols are the dominant source of warm-temperature immersion-mode INPs and drive uncertainties in INP predictability, Sci. Adv., 9, eadg3715, https://doi.org/10.1126/SCIADV.ADG3715, 2023.
Culley, T. M., Weller, S. G., and Sakai, A. K.: The evolution of wind pollination in angiosperms, Trends Ecol. Evol., 17, 361–369, https://doi.org/10.1016/S0169-5347(02)02540-5, 2002.
Daily, M. I., Tarn, M. D., Whale, T. F., and Murray, B. J.: An evaluation of the heat test for the ice-nucleating ability of minerals and biological material, Atmos. Meas. Tech., 15, 2635–2665, https://doi.org/10.5194/amt-15-2635-2022, 2022.
DeMott, P. J. and Prenni, A. J.: New Directions: Need for defining the numbers and sources of biological aerosols acting as ice nuclei, Atmos. Environ., 44, 1944–1945, https://doi.org/10.1016/J.ATMOSENV.2010.02.032, 2010.
Després, V. R., Alex Huffman, J., Burrows, S. M., Hoose, C., Safatov, A. S., Buryak, G., Fröhlich-Nowoisky, J., Elbert, W., Andreae, M. O., Pöschl, U., and Jaenicke, R.: Primary biological aerosol particles in the atmosphere: a review, Stock. Uni Press, 64, https://doi.org/10.3402/TELLUSB.V64I0.15598, 2012.
Diehl, K., Matthias-Maser, S., Jaenicke, R., and Mitra, S. K.: The ice nucleating ability of pollen: Part II. Laboratory studies in immersion and contact freezing modes, Atmos. Res., 61, 125–133, https://doi.org/10.1016/S0169-8095(01)00132-6, 2002.
Dreischmeier, K., Budke, C., Wiehemeier, L., Kottke, T., and Koop, T.: Boreal pollen contain ice-nucleating as well as ice-binding “antifreeze” polysaccharides, Sci. Rep., 7, 41890, https://doi.org/10.1038/srep41890, 2017.
Duan, P., Hu, W., Wu, Z., Bi, K., Zhu, J., and Fu, P.: Ice nucleation activity of airborne pollen: A short review of results from laboratory experiments, Atmos. Res., 285, 106659, https://doi.org/10.1016/j.atmosres.2023.106659, 2023.
Eufemio, R. J., de Almeida Ribeiro, I., Sformo, T. L., Laursen, G. A., Molinero, V., Fröhlich-Nowoisky, J., Bonn, M., and Meister, K.: Lichen species across Alaska produce highly active and stable ice nucleators, Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, 2023.
Felgitsch, L., Baloh, P., Burkart, J., Mayr, M., Momken, M. E., Seifried, T. M., Winkler, P., Schmale III, D. G., and Grothe, H.: Birch leaves and branches as a source of ice-nucleating macromolecules, Atmos. Chem. Phys., 18, 16063–16079, https://doi.org/10.5194/acp-18-16063-2018, 2018.
Friedman, J. and Barrett, S. C. H.: Wind of change: new insights on the ecology and evolution of pollination and mating in wind-pollinated plants, Ann. Bot., 103, 1515–1527, https://doi.org/10.1093/AOB/MCP035, 2009.
Gao, Y., Bissoyi, A., Kinney, N. L. H., Whale, T. F., Guo, Q., and Gibson, M. I.: Proline-conditioning and chemically-programmed ice nucleation protects spheroids during cryopreservation, Chem. Commun., 59, 9086–9089, https://doi.org/10.1039/D3CC02252H, 2023.
Gregory, P. H.: The microbiology of the atmosphere, Leonard Hill Books, https://doi.org/10.5962/bhl.title.7291, 1961.
Gross, D. C., Proebsting, E. L., and Maccrindle-Zimmerman, H.: Development, Distribution, and Characteristics of Intrinsic, Nonbacterial Ice Nuclei in Prunus Wood, Plant Physiol., 88, 915–922, https://doi.org/10.1104/PP.88.3.915, 1988.
Grote, M., Valenta, R., and Reichelt, R.: Abortive pollen germination: a mechanism of allergen release in birch, alder, and hazel revealed by immunogold electron microscopy, J. Allergy Clin. Immun., 111, 1017–1023, https://doi.org/10.1067/MAI.2003.1452, 2003.
Gute, E. and Abbatt, J. P. D.: Ice nucleating behavior of different tree pollen in the immersion mode, Atmos. Environ., 231, 117488, https://doi.org/10.1016/j.atmosenv.2020.117488, 2020.
Gute, E., David, R. O., Kanji, Z. A., and Abbatt, J. P. D.: Ice Nucleation Ability of Tree Pollen Altered by Atmospheric Processing, ACS Earth Sp. Chem., 4, 2312–2319, https://doi.org/10.1021/acsearthspacechem.0c00218, 2020.
Hallett, J. and Mossop, S. C.: Production of secondary ice particles during the riming process, Nature, 249, 26–28, https://doi.org/10.1038/249026a0, 1974.
Herrera, C. M. and Pellmyr, O.: Plant Animal Interactions: An Evolutionary Approach, John Wiley & Sons, ISBN 978-0-632-05267-7, 2002.
Hong, T., Yin, J. Y., Nie, S. P., and Xie, M. Y.: Applications of infrared spectroscopy in polysaccharide structural analysis: Progress, challenge and perspective, Food Chem. X, 12, 100168, https://doi.org/10.1016/J.FOCHX.2021.100168, 2021.
Hoose, C., Kristjánsson, J. E., Chen, J. P., and Hazra, A.: A Classical-Theory-Based Parameterization of Heterogeneous Ice Nucleation by Mineral Dust, Soot, and Biological Particles in a Global Climate Model, J. Atmos. Sci., 67, 2483–2503, https://doi.org/10.1175/2010JAS3425.1, 2010a.
Hoose, C., Kristjánsson, J. E., and Burrows, S. M.: How important is biological ice nucleation in clouds on a global scale?, Environ. Res. Lett., 5, 024009, https://doi.org/10.1088/1748-9326/5/2/024009, 2010b.
Huang, S., Hu, W., Chen, J., Wu, Z., Zhang, D., and Fu, P.: Overview of biological ice nucleating particles in the atmosphere, Environ. Int., 146, 106197, https://doi.org/10.1016/j.envint.2020.106197, 2021.
Hummel, M., Hoose, C., Pummer, B., Schaupp, C., Fröhlich-Nowoisky, J., and Möhler, O.: Simulating the influence of primary biological aerosol particles on clouds by heterogeneous ice nucleation, Atmos. Chem. Phys., 18, 15437–15450, https://doi.org/10.5194/acp-18-15437-2018, 2018.
Jacobson, M. Z. and Streets, D. G.: Influence of future anthropogenic emissions on climate, natural emissions, and air quality, J. Geophys. Res.-Atmos., 114, 8118, https://doi.org/10.1029/2008JD011476, 2009.
Kanji, Z. A., Ladino, L. A., Wex, H., Boose, Y., Burkert-Kohn, M., Cziczo, D. J., and Krämer, M.: Overview of Ice Nucleating Particles, Meteorol. Monogr., 58, 1.1–1.33, https://doi.org/10.1175/AMSMONOGRAPHS-D-16-0006.1, 2017.
Kieft, T. L.: Ice nucleation activity in lichens, Appl. Environ. Microbiol., 54, 1678–1681, https://doi.org/10.1128/AEM.54.7.1678-1681.1988, 1988.
Kinney, N. L. H., Hepburn, C. A., Gibson, M. I., Ballesteros, D., and Whale, T. F.: Data for High interspecific variability in ice nucleation activity suggests pollen ice nucleators are incidental, University of Warwick [data set], https://wrap.warwick.ac.uk/186384 (last access: 3 July 2024), 2024.
Knopf, D. A. and Alpert, P. A.: Atmospheric ice nucleation, Nat. Rev. Phys., 54, 203–217, https://doi.org/10.1038/s42254-023-00570-7, 2023.
Korolev, A. and Leisner, T.: Review of experimental studies of secondary ice production, Atmos. Chem. Phys., 20, 11767–11797, https://doi.org/10.5194/acp-20-11767-2020, 2020.
Kunert, A. T., Pöhlker, M. L., Tang, K., Krevert, C. S., Wieder, C., Speth, K. R., Hanson, L. E., Morris, C. E., Schmale III, D. G., Pöschl, U., and Fröhlich-Nowoisky, J.: Macromolecular fungal ice nuclei in Fusarium: effects of physical and chemical processing, Biogeosciences, 16, 4647–4659, https://doi.org/10.5194/bg-16-4647-2019, 2019.
Lindow, S. E., Arny, D. C., and Upper, C. D.: Bacterial Ice Nucleation: A Factor in Frost Injury to Plants, Plant Physiol., 70, 1084–1089, https://doi.org/10.1104/PP.70.4.1084, 1982.
Lukas, M., Schwidetzky, R., Eufemio, R. J., Bonn, M., and Meister, K.: Toward Understanding Bacterial Ice Nucleation, J. Phys. Chem. B, 126, 1861–1867, https://doi.org/10.1021/acs.jpcb.1c09342, 2022.
Lundheim, R.: Physiological and ecological significance of biological ice nucleators, Philos. T. Roy. Soc. B, 357, 937–943, https://doi.org/10.1098/RSTB.2002.1082, 2002.
Maki, L. R., Galyan, E. L., Chang-Chien, M.-M., and Caldwell, D. R.: Ice nucleation induced by pseudomonas syringae, Appl. Microbiol., 28, 456–459, https://doi.org/10.1128/AM.28.3.456-459.1974, 1974.
Morris, C. E., Georgakopoulos, D. G., and Sands, D. C.: Ice nucleation active bacteria and their potential role in precipitation, J. Phys. IV, 121, 87–103, https://doi.org/10.1051/JP4:2004121004, 2004.
Murray, B. J., O'sullivan, D., Atkinson, J. D., and Webb, M. E.: Ice nucleation by particles immersed in supercooled cloud droplets, Chem. Soc. Rev., 41, 6519–6554, https://doi.org/10.1039/c2cs35200a, 2012.
Murray, B. J., Carslaw, K. S., and Field, P. R.: Opinion: Cloud-phase climate feedback and the importance of ice-nucleating particles, Atmos. Chem. Phys., 21, 665–679, https://doi.org/10.5194/acp-21-665-2021, 2021.
Murray, K. A., Kinney, N. L. H., Griffiths, C. A., Hasan, M., Gibson, M. I., and Whale, T. F.: Pollen derived macromolecules serve as a new class of ice-nucleating cryoprotectants, Sci. Rep., 12, 12295, https://doi.org/10.1038/s41598-022-15545-4, 2022.
Murray, K. A., Gao, Y., Griffiths, C. A., Kinney, N. L. H., Guo, Q., Gibson, M. I., and Whale, T. F.: Chemically Induced Extracellular Ice Nucleation Reduces Intracellular Ice Formation Enabling 2D and 3D Cellular Cryopreservation, JACS Au, 3, 1314–1320, https://doi.org/10.1021/JACSAU.3C00056, 2023.
Nikonenko, N. A., Buslov, D. K., Sushko, N. I., and Zhbankov, R. G.: Spectroscopic manifestation of stretching vibrations of glycosidic linkage in polysaccharides, J. Mol. Struct., 752, 20–24, https://doi.org/10.1016/J.MOLSTRUC.2005.05.015, 2005.
Ollerton, J., Winfree, R., and Tarrant, S.: How many flowering plants are pollinated by animals?, Oikos, 120, 321–326, https://doi.org/10.1111/J.1600-0706.2010.18644.X, 2011.
O'Sullivan, D., Murray, B. J., Ross, J. F., Whale, T. F., Price, H. C., Atkinson, J. D., Umo, N. S., and Webb, M. E.: The relevance of nanoscale biological fragments for ice nucleation in clouds, Sci. Rep., 5, 8082, https://doi.org/10.1038/srep08082, 2015.
Potter, L. D. and Rowley, J.: Pollen Rain and Vegetation, San Augustin Plains, New Mexico, Gazette, 122, 1–25, 1960.
Pummer, B. G., Bauer, H., Bernardi, J., Bleicher, S., and Grothe, H.: Suspendable macromolecules are responsible for ice nucleation activity of birch and conifer pollen, Atmos. Chem. Phys., 12, 2541–2550, https://doi.org/10.5194/acp-12-2541-2012, 2012.
Pummer, B. G., Bauer, H., Bernardi, J., Chazallon, B., Facq, S., Lendl, B., Whitmore, K., and Grothe, H.: Chemistry and morphology of dried-up pollen suspension residues, J. Raman Spectrosc., 44, 1654–1658, https://doi.org/10.1002/jrs.4395, 2013.
Pummer, B. G., Budke, C., Augustin-Bauditz, S., Niedermeier, D., Felgitsch, L., Kampf, C. J., Huber, R. G., Liedl, K. R., Loerting, T., Moschen, T., Schauperl, M., Tollinger, M., Morris, C. E., Wex, H., Grothe, H., Pöschl, U., Koop, T., and Fröhlich-Nowoisky, J.: Ice nucleation by water-soluble macromolecules, Atmos. Chem. Phys., 15, 4077–4091, https://doi.org/10.5194/acp-15-4077-2015, 2015.
Royal Botanic Gardens Kew: Plants of the World Online, http://www.plantsoftheworldonline.org/ (last access: 1 November 2023), 2023.
StataCorp: Stata Statistical Software: Release 17, College Station, TX, StataCorp LLC., 2021.
Steiner, A. L. and Solmon, F.: Pollen Rupture and Its Impact on Precipitation in Clean Continental Conditions, Geophys. Res. Lett., 45, 7156–7164, https://doi.org/10.1029/2018GL077692, 2018.
Stephens, R. E., Gallagher, R. V., Dun, L., Cornwell, W., and Sauquet, H.: Insect pollination for most of angiosperm evolutionary history, New Phytol., 240, 880–891, https://doi.org/10.1111/NPH.18993, 2023.
Subba, T., Zhang, Y., and Steiner, A. L.: Simulating the Transport and Rupture of Pollen in the Atmosphere, J. Adv. Model. Earth Sy., 15, e2022MS003329, https://doi.org/10.1029/2022MS003329, 2023.
Szyrmer, W. and Zawadzki, I.: Biogenic and Anthropogenic Sources of Ice-Forming Nuclei: A Review, B. Am. Meteor. Soc., 78, 209–228, https://doi.org/10.1175/1520-0477(1997)078<0209:BAASOI>2.0.CO;2, 1997.
Taylor, P. E., Flagan, R. C., Miguel, A. G., Valenta, R., and Glovsky, M. M.: Birch pollen rupture and the release of aerosols of respirable allergens, Clin. Exp. Allergy, 34, 1591–1596, https://doi.org/10.1111/j.1365-2222.2004.02078.x, 2004.
Tong, H.-J., Ouyang, B., Nikolovski, N., Lienhard, D. M., Pope, F. D., and Kalberer, M.: A new electrodynamic balance (EDB) design for low-temperature studies: application to immersion freezing of pollen extract bioaerosols, Atmos. Meas. Tech., 8, 1183–1195, https://doi.org/10.5194/amt-8-1183-2015, 2015.
von Blohn, N., Mitra, S. K., Diehl, K., and Borrmann, S.: The ice nucleating ability of pollen: Part III: New laboratory studies in immersion and contact freezing modes including more pollen types, Atmos. Res., 78, 182–189, https://doi.org/10.1016/j.atmosres.2005.03.008, 2005.
Wang, X. Q. and Ran, J. H.: Evolution and biogeography of gymnosperms, Mol. Phylogenet. Evol., 75, 24–40, https://doi.org/10.1016/J.YMPEV.2014.02.005, 2014.
Werchner, S., Gute, E., Hoose, C., Kottmeier, C., Pauling, A., Vogel, H., and Vogel, B.: When Do Subpollen Particles Become Relevant for Ice Nucleation Processes in Clouds?, J. Geophys. Res.-Atmos., 127, e2021JD036340, https://doi.org/10.1029/2021JD036340, 2022.
Whale, T. F.: Quantification of the Ice Nucleation Activity of Ice-Binding Proteins Using a Microliter Droplet Freezing Experiment, Methods Mol. Biol., 2730, 121–134, https://doi.org/10.1007/978-1-0716-3503-2_9, 2024.
Wieland, F., Bothen, N., Schwidetzky, R., Seifried, T. M., Bieber, P., Pöschl, U., Meister, K., Bonn, M., Fröhlich-Nowoisky, J., and Grothe, H.: Aggregation of ice-nucleating macromolecules from Betula pendula pollen determines ice nucleation efficiency, EGUsphere [preprint], https://doi.org/10.5194/egusphere-2024-752, 2024.
Williams, C. G.: Forest tree pollen dispersal via the water cycle, Am. J. Bot., 100, 1184–1190, https://doi.org/10.3732/AJB.1300085, 2013.
Williams, C. G. and Després, V.: Northern Hemisphere forests at temperate and boreal latitudes are substantial pollen contributors to atmospheric bioaerosols, Forest Ecol. Manage., 401, 187–191, https://doi.org/10.1016/J.FORECO.2017.06.040, 2017.
Wozniak, M. C., Solmon, F., and Steiner, A. L.: Pollen Rupture and Its Impact on Precipitation in Clean Continental Conditions, Geophys. Res. Lett., 45, 7156–7164, https://doi.org/10.1029/2018GL077692, 2018.
Zachariassen, K. E. and Hammel, H. T.: Nucleating agents in the haemolymph of insects tolerant to freezing, Nature, 262, 285–287, https://doi.org/10.1038/262285a0, 1976.
Zachariassen, K. E. and Kristiansen, E.: Ice Nucleation and Antinucleation in Nature, Cryobiology, 41, 257–279, https://doi.org/10.1006/cryo.2000.2289, 2000.
Short summary
Molecules released from plant pollen induce the formation of ice from supercooled water at temperatures warm enough to suggest an underlying function for this activity. In this study we show that ice nucleators are ubiquitous in pollen. We suggest the molecules responsible fulfil some unrelated biological function and nucleate ice incidentally. The ubiquity of ice-nucleating molecules in pollen and particularly active examples reveal a greater potential for pollen to impact weather and climate.
Molecules released from plant pollen induce the formation of ice from supercooled water at...
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