Articles | Volume 9, issue 12
https://doi.org/10.5194/bg-9-5161-2012
© Author(s) 2012. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Special issue:
https://doi.org/10.5194/bg-9-5161-2012
© Author(s) 2012. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
14 Dec 2012
Research article |
| 14 Dec 2012
Towards the use of dynamic growing seasons in a chemical transport model
A. Sakalli
Dept. Earth & Space Sciences, Chalmers Univ. Technology, Gothenburg, Sweden
D. Simpson
Dept. Earth & Space Sciences, Chalmers Univ. Technology, Gothenburg, Sweden
EMEP MSC-W, Norwegian Meteorological Institute, Oslo, Norway
Related authors
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Per Erik Karlsson, Patrick Büker, Sam Bland, David Simpson, Katrina Sharps, Felicity Hayes, and Lisa Emberson
EGUsphere, https://doi.org/10.5194/egusphere-2024-3742, https://doi.org/10.5194/egusphere-2024-3742, 2024
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Stomatal ozone uptake and the negative impacts on forest growth rates were estimated for European forests. This was translated to annual increments in the forest living biomass carbon stocks, with and without ozone exposure. In the absence of O3 exposure, European forest growth rates would on average increase by 9 %, but the sequestration to the living biomass carbon stocks would increase by 31 %, since the sequestration depends on the difference between growth and harvest rates.
Augustin Colette, Gaëlle Collin, François Besson, Etienne Blot, Vincent Guidard, Frederik Meleux, Adrien Royer, Valentin Petiot, Claire Miller, Oihana Fermond, Alizé Jeant, Mario Adani, Joaquim Arteta, Anna Benedictow, Robert Bergström, Dene Bowdalo, Jorgen Brandt, Gino Briganti, Ana C. Carvalho, Jesper Heile Christensen, Florian Couvidat, Ilia D’Elia, Massimo D’Isidoro, Hugo Denier van der Gon, Gaël Descombes, Enza Di Tomaso, John Douros, Jeronimo Escribano, Henk Eskes, Hilde Fagerli, Yalda Fatahi, Johannes Flemming, Elmar Friese, Lise Frohn, Michael Gauss, Camilla Geels, Guido Guarnieri, Marc Guevara, Antoine Guion, Jonathan Guth, Risto Hänninen, Kaj Hansen, Ulas Im, Ruud Janssen, Marine Jeoffrion, Mathieu Joly, Luke Jones, Oriol Jorba, Evgeni Kadantsev, Michael Kahnert, Jacek W. Kaminski, Rostislav Kouznetsov, Richard Kranenburg, Jeroen Kuenen, Anne Caroline Lange, Joachim Langner, Victor Lannuque, Francesca Macchia, Astrid Manders, Mihaela Mircea, Agnes Nyiri, Miriam Olid, Carlos Pérez García-Pando, Yuliia Palamarchuk, Antonio Piersanti, Blandine Raux, Miha Razinger, Lennard Robertson, Arjo Segers, Martijn Schaap, Pilvi Siljamo, David Simpson, Mikhail Sofiev, Anders Stangel, Joanna Struzewska, Carles Tena, Renske Timmermans, Thanos Tsikerdekis, Svetlana Tsyro, Svyatoslav Tyuryakov, Anthony Ung, Andreas Uppstu, Alvaro Valdebenito, Peter van Velthoven, Lina Vitali, Zhuyun Ye, Vincent-Henri Peuch, and Laurence Rouïl
EGUsphere, https://doi.org/10.5194/egusphere-2024-3744, https://doi.org/10.5194/egusphere-2024-3744, 2024
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The Copernicus Atmosphere Monitoring Service – Regional Production delivers daily forecasts, analyses, and reanalyses of air quality in Europe. The Service relies on a distributed modelling production by eleven leading European modelling teams following stringent requirements with an operational design which has no equivalent in the world. All the products are full, free, open and quality assured and disseminated with a high level of reliability.
Yao Ge, Sverre Solberg, Mathew R. Heal, Stefan Reimann, Willem van Caspel, Bryan Hellack, Thérèse Salameh, and David Simpson
Atmos. Chem. Phys., 24, 7699–7729, https://doi.org/10.5194/acp-24-7699-2024, https://doi.org/10.5194/acp-24-7699-2024, 2024
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Atmospheric volatile organic compounds (VOCs) constitute many species, acting as precursors to ozone and aerosol. Given the uncertainties in VOC emissions, lack of evaluation studies, and recent changes in emissions, this work adapts the EMEP MSC-W to evaluate emission inventories in Europe. We focus on the varying agreement between modelled and measured VOCs across different species and underscore potential inaccuracies in total and sector-specific emission estimates.
Karl Espen Yttri, Are Bäcklund, Franz Conen, Sabine Eckhardt, Nikolaos Evangeliou, Markus Fiebig, Anne Kasper-Giebl, Avram Gold, Hans Gundersen, Cathrine Lund Myhre, Stephen Matthew Platt, David Simpson, Jason D. Surratt, Sönke Szidat, Martin Rauber, Kjetil Tørseth, Martin Album Ytre-Eide, Zhenfa Zhang, and Wenche Aas
Atmos. Chem. Phys., 24, 2731–2758, https://doi.org/10.5194/acp-24-2731-2024, https://doi.org/10.5194/acp-24-2731-2024, 2024
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We discuss carbonaceous aerosol (CA) observed at the high Arctic Zeppelin Observatory (2017 to 2020). We find that organic aerosol is a significant fraction of the Arctic aerosol, though less than sea salt aerosol and mineral dust, as well as non-sea-salt sulfate, originating mainly from anthropogenic sources in winter and from natural sources in summer, emphasizing the importance of wildfires for biogenic secondary organic aerosol and primary biological aerosol particles observed in the Arctic.
Willem E. van Caspel, David Simpson, Jan Eiof Jonson, Anna M. K. Benedictow, Yao Ge, Alcide di Sarra, Giandomenico Pace, Massimo Vieno, Hannah L. Walker, and Mathew R. Heal
Geosci. Model Dev., 16, 7433–7459, https://doi.org/10.5194/gmd-16-7433-2023, https://doi.org/10.5194/gmd-16-7433-2023, 2023
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Radiation coming from the sun is essential to atmospheric chemistry, driving the breakup, or photodissociation, of atmospheric molecules. This in turn affects the chemical composition and reactivity of the atmosphere. The representation of photodissociation effects is therefore essential in atmospheric chemistry modeling. One such model is the EMEP MSC-W model, for which a new way of calculating the photodissociation rates is tested and evaluated in this paper.
Katerina Sindelarova, Jana Markova, David Simpson, Peter Huszar, Jan Karlicky, Sabine Darras, and Claire Granier
Earth Syst. Sci. Data, 14, 251–270, https://doi.org/10.5194/essd-14-251-2022, https://doi.org/10.5194/essd-14-251-2022, 2022
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Three new datasets of global emissions of biogenic volatile organic compounds (BVOCs) emitted into the atmosphere from terrestrial vegetation were developed for air quality modelling using the Model of Emissions of Gases and Aerosols from Nature (MEGANv2.1) driven by European Centre for Medium-Range Weather Forecasts meteorological reanalyses for the years 2000–2019. The datasets include updates of the isoprene emission factors in Europe and study the impact of land cover change on emissions.
David Simpson and Sabine Darras
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2021-221, https://doi.org/10.5194/essd-2021-221, 2021
Manuscript not accepted for further review
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We present a dataset of global soil NO emissions suitable for atmospheric chemistry modelling. Data are provided globally at 0.5° × 0.5° degrees horizontal resolution, and with monthly time resolution over the period 2000–2018. This paper presents the emission algorithms and their data-sources, some comments on the availability of soil NO emissions in other inventories (and how to avoid double-counting), and finally some preliminary modelling results and comparison with observed data.
Karl Espen Yttri, Francesco Canonaco, Sabine Eckhardt, Nikolaos Evangeliou, Markus Fiebig, Hans Gundersen, Anne-Gunn Hjellbrekke, Cathrine Lund Myhre, Stephen Matthew Platt, André S. H. Prévôt, David Simpson, Sverre Solberg, Jason Surratt, Kjetil Tørseth, Hilde Uggerud, Marit Vadset, Xin Wan, and Wenche Aas
Atmos. Chem. Phys., 21, 7149–7170, https://doi.org/10.5194/acp-21-7149-2021, https://doi.org/10.5194/acp-21-7149-2021, 2021
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Carbonaceous aerosol sources and trends were studied at the Birkenes Observatory. A large decrease in elemental carbon (EC; 2001–2018) and a smaller decline in levoglucosan (2008–2018) suggest that organic carbon (OC)/EC from traffic/industry is decreasing, whereas the abatement of OC/EC from biomass burning has been less successful. Positive matrix factorization apportioned 72 % of EC to fossil fuel sources and 53 % (PM2.5) and 78 % (PM10–2.5) of OC to biogenic sources.
David Simpson, Robert Bergström, Alan Briolat, Hannah Imhof, John Johansson, Michael Priestley, and Alvaro Valdebenito
Geosci. Model Dev., 13, 6447–6465, https://doi.org/10.5194/gmd-13-6447-2020, https://doi.org/10.5194/gmd-13-6447-2020, 2020
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This paper outlines the structure and usage of the GenChem system, which includes a chemical pre-processor (GenChem.py) and a simple box model (boxChem). GenChem provides scripts and input files for converting chemical equations into differential form for use in atmospheric chemical transport models (CTMs) and/or the boxChem system. Although GenChem is primarily intended for users of the EMEP MSC-W CTM and related systems, boxChem can be run as a stand-alone chemical solver.
Chris R. Flechard, Andreas Ibrom, Ute M. Skiba, Wim de Vries, Marcel van Oijen, David R. Cameron, Nancy B. Dise, Janne F. J. Korhonen, Nina Buchmann, Arnaud Legout, David Simpson, Maria J. Sanz, Marc Aubinet, Denis Loustau, Leonardo Montagnani, Johan Neirynck, Ivan A. Janssens, Mari Pihlatie, Ralf Kiese, Jan Siemens, André-Jean Francez, Jürgen Augustin, Andrej Varlagin, Janusz Olejnik, Radosław Juszczak, Mika Aurela, Daniel Berveiller, Bogdan H. Chojnicki, Ulrich Dämmgen, Nicolas Delpierre, Vesna Djuricic, Julia Drewer, Eric Dufrêne, Werner Eugster, Yannick Fauvel, David Fowler, Arnoud Frumau, André Granier, Patrick Gross, Yannick Hamon, Carole Helfter, Arjan Hensen, László Horváth, Barbara Kitzler, Bart Kruijt, Werner L. Kutsch, Raquel Lobo-do-Vale, Annalea Lohila, Bernard Longdoz, Michal V. Marek, Giorgio Matteucci, Marta Mitosinkova, Virginie Moreaux, Albrecht Neftel, Jean-Marc Ourcival, Kim Pilegaard, Gabriel Pita, Francisco Sanz, Jan K. Schjoerring, Maria-Teresa Sebastià, Y. Sim Tang, Hilde Uggerud, Marek Urbaniak, Netty van Dijk, Timo Vesala, Sonja Vidic, Caroline Vincke, Tamás Weidinger, Sophie Zechmeister-Boltenstern, Klaus Butterbach-Bahl, Eiko Nemitz, and Mark A. Sutton
Biogeosciences, 17, 1583–1620, https://doi.org/10.5194/bg-17-1583-2020, https://doi.org/10.5194/bg-17-1583-2020, 2020
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Experimental evidence from a network of 40 monitoring sites in Europe suggests that atmospheric nitrogen deposition to forests and other semi-natural vegetation impacts the carbon sequestration rates in ecosystems, as well as the net greenhouse gas balance including other greenhouse gases such as nitrous oxide and methane. Excess nitrogen deposition in polluted areas also leads to other environmental impacts such as nitrogen leaching to groundwater and other pollutant gaseous emissions.
Karl Espen Yttri, David Simpson, Robert Bergström, Gyula Kiss, Sönke Szidat, Darius Ceburnis, Sabine Eckhardt, Christoph Hueglin, Jacob Klenø Nøjgaard, Cinzia Perrino, Ignazio Pisso, Andre Stephan Henry Prevot, Jean-Philippe Putaud, Gerald Spindler, Milan Vana, Yan-Lin Zhang, and Wenche Aas
Atmos. Chem. Phys., 19, 4211–4233, https://doi.org/10.5194/acp-19-4211-2019, https://doi.org/10.5194/acp-19-4211-2019, 2019
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Carbonaceous aerosols from natural sources were abundant regardless of season. Residential wood burning (RWB) emissions were occasionally equally as large as or larger than of fossil-fuel sources, depending on season and region. RWB emissions are poorly constrained; thus emissions inventories need improvement. Harmonizing emission factors between countries is likely the most important step to improve model calculations for biomass burning emissions and European PM2.5 concentrations in general.
Michael Le Breton, Åsa M. Hallquist, Ravi Kant Pathak, David Simpson, Yujue Wang, John Johansson, Jing Zheng, Yudong Yang, Dongjie Shang, Haichao Wang, Qianyun Liu, Chak Chan, Tao Wang, Thomas J. Bannan, Michael Priestley, Carl J. Percival, Dudley E. Shallcross, Keding Lu, Song Guo, Min Hu, and Mattias Hallquist
Atmos. Chem. Phys., 18, 13013–13030, https://doi.org/10.5194/acp-18-13013-2018, https://doi.org/10.5194/acp-18-13013-2018, 2018
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We apply state-of-the-art chemical characterization to determine the chloride radical production in Beijing via measurement of inorganic halogens at a semi-rural site. The high concentration of inorganic halogens, namely nitryl chloride, enables the production of chlorinated volatile organic compounds which are measured in both the gas and particle phases simultaneously. This enables the secondary production of aerosols via chlorine oxidation to be directly observed in ambient air.
Rebecca J. Oliver, Lina M. Mercado, Stephen Sitch, David Simpson, Belinda E. Medlyn, Yan-Shih Lin, and Gerd A. Folberth
Biogeosciences, 15, 4245–4269, https://doi.org/10.5194/bg-15-4245-2018, https://doi.org/10.5194/bg-15-4245-2018, 2018
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Potential gains in terrestrial carbon sequestration over Europe from elevated CO2 can be partially offset by concurrent rises in tropospheric O3. The land surface model JULES was run in a factorial suite of experiments showing that by 2050 simulated GPP was reduced by 4 to 9 % due to plant O3 damage. Large regional variations exist with larger impacts identified for temperate compared to boreal regions. Plant O3 damage was greatest over the twentieth century and declined into the future.
Scarlet Stadtler, David Simpson, Sabine Schröder, Domenico Taraborrelli, Andreas Bott, and Martin Schultz
Atmos. Chem. Phys., 18, 3147–3171, https://doi.org/10.5194/acp-18-3147-2018, https://doi.org/10.5194/acp-18-3147-2018, 2018
Matthieu Pommier, Hilde Fagerli, Michael Gauss, David Simpson, Sumit Sharma, Vinay Sinha, Sachin D. Ghude, Oskar Landgren, Agnes Nyiri, and Peter Wind
Atmos. Chem. Phys., 18, 103–127, https://doi.org/10.5194/acp-18-103-2018, https://doi.org/10.5194/acp-18-103-2018, 2018
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India has to cope with a poor air quality, and this work shows a predicted increase in pollution (O3 & PM2.5) if no further policy efforts are made in the future. Climate change will modify the soil moisture leading to changes in O3. Changes in PM2.5 are related to changes in precipitation, biogenic emissions and wind speed. It is also shown that in the 2050s, the secondary inorganic aerosols will become the main component of PM2.5 over India related to the increase in anthropogenic emissions.
Martina Franz, David Simpson, Almut Arneth, and Sönke Zaehle
Biogeosciences, 14, 45–71, https://doi.org/10.5194/bg-14-45-2017, https://doi.org/10.5194/bg-14-45-2017, 2017
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Ozone is a toxic air pollutant that can damage plant leaves and impact their carbon uptake from the atmosphere. We extend a terrestrial biosphere model to account for ozone damage of plants and investigate the impact on the terrestrial carbon cycle. Our approach accounts for ozone transport from the free troposphere to leaf level. We find that this substantially affects simulated ozone uptake into the plants. Simulations indicate that ozone damages plants less than expected from previous studies
Mark R. Theobald, David Simpson, and Massimo Vieno
Geosci. Model Dev., 9, 4475–4489, https://doi.org/10.5194/gmd-9-4475-2016, https://doi.org/10.5194/gmd-9-4475-2016, 2016
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Impacts of air pollution at a continental scale, estimated using air quality models, can potentially be greatly under- or overestimated due to the low spatial resolution used (grid cells of 10–50 km). We present a method to estimate the spatial variations in air quality within a model grid cell by combining high-resolution emission data with estimates of short range dispersion. This simple but robust technique has the potential to improve estimates of air quality impacts at a continental scale.
D. Fowler, C. E. Steadman, D. Stevenson, M. Coyle, R. M. Rees, U. M. Skiba, M. A. Sutton, J. N. Cape, A. J. Dore, M. Vieno, D. Simpson, S. Zaehle, B. D. Stocker, M. Rinaldi, M. C. Facchini, C. R. Flechard, E. Nemitz, M. Twigg, J. W. Erisman, K. Butterbach-Bahl, and J. N. Galloway
Atmos. Chem. Phys., 15, 13849–13893, https://doi.org/10.5194/acp-15-13849-2015, https://doi.org/10.5194/acp-15-13849-2015, 2015
H. A. C. Denier van der Gon, R. Bergström, C. Fountoukis, C. Johansson, S. N. Pandis, D. Simpson, and A. J. H. Visschedijk
Atmos. Chem. Phys., 15, 6503–6519, https://doi.org/10.5194/acp-15-6503-2015, https://doi.org/10.5194/acp-15-6503-2015, 2015
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Residential wood combustion (RWC) is increasing in Europe but may cause high emissions of particulate matter (PM). A revised bottom-up emission inventory was made which included the semi-volatile components. The revised RWC emissions are 2–3 times higher than the previous inventory. It significantly improved the modeling of PM and comparison with observations. Our results suggest primary PM2.5 emission from RWC as reported in Europe is underestimated and emission inventories need to be revised.
R. Bergström, M. Hallquist, D. Simpson, J. Wildt, and T. F. Mentel
Atmos. Chem. Phys., 14, 13643–13660, https://doi.org/10.5194/acp-14-13643-2014, https://doi.org/10.5194/acp-14-13643-2014, 2014
H. Pleijel, H. Danielsson, D. Simpson, and G. Mills
Biogeosciences, 11, 4521–4528, https://doi.org/10.5194/bg-11-4521-2014, https://doi.org/10.5194/bg-11-4521-2014, 2014
M. Karl, N. Castell, D. Simpson, S. Solberg, J. Starrfelt, T. Svendby, S.-E. Walker, and R. F. Wright
Atmos. Chem. Phys., 14, 8533–8557, https://doi.org/10.5194/acp-14-8533-2014, https://doi.org/10.5194/acp-14-8533-2014, 2014
D. Simpson, C. Andersson, J.H. Christensen, M. Engardt, C. Geels, A. Nyiri, M. Posch, J. Soares, M. Sofiev, P. Wind, and J. Langner
Atmos. Chem. Phys., 14, 6995–7017, https://doi.org/10.5194/acp-14-6995-2014, https://doi.org/10.5194/acp-14-6995-2014, 2014
J. Genberg, H. A. C. Denier van der Gon, D. Simpson, E. Swietlicki, H. Areskoug, D. Beddows, D. Ceburnis, M. Fiebig, H. C. Hansson, R. M. Harrison, S. G. Jennings, S. Saarikoski, G. Spindler, A. J. H. Visschedijk, A. Wiedensohler, K. E. Yttri, and R. Bergström
Atmos. Chem. Phys., 13, 8719–8738, https://doi.org/10.5194/acp-13-8719-2013, https://doi.org/10.5194/acp-13-8719-2013, 2013
C. R. Flechard, R.-S. Massad, B. Loubet, E. Personne, D. Simpson, J. O. Bash, E. J. Cooter, E. Nemitz, and M. A. Sutton
Biogeosciences, 10, 5183–5225, https://doi.org/10.5194/bg-10-5183-2013, https://doi.org/10.5194/bg-10-5183-2013, 2013
O. Hertel, C. A. Skjøth, S. Reis, A. Bleeker, R. M. Harrison, J. N. Cape, D. Fowler, U. Skiba, D. Simpson, T. Jickells, M. Kulmala, S. Gyldenkærne, L. L. Sørensen, J. W. Erisman, and M. A. Sutton
Biogeosciences, 9, 4921–4954, https://doi.org/10.5194/bg-9-4921-2012, https://doi.org/10.5194/bg-9-4921-2012, 2012
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Matthew G. Davis, Kevin Yan, and Jennifer G. Murphy
Biogeosciences, 21, 5381–5392, https://doi.org/10.5194/bg-21-5381-2024, https://doi.org/10.5194/bg-21-5381-2024, 2024
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Ammonia applied as fertilizer can volatilize into the atmosphere. This can threaten vulnerable ecosystems and human health. We investigated the partitioning of ammonia between an immobile adsorbed phase and mobile aqueous phase using several adsorption models. Using the Temkin model we determined that previous approaches to this issue may overestimate the quantity available for exchange by a factor of 5–20, suggesting that ammonia emissions from soil may be overestimated.
Annika Einbock and Franz Conen
Biogeosciences, 21, 5219–5231, https://doi.org/10.5194/bg-21-5219-2024, https://doi.org/10.5194/bg-21-5219-2024, 2024
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A small fraction of particles found at great heights in the atmosphere can freeze cloud droplets at temperatures of ≥ −10 °C and thus influence cloud properties. We provide a novel type of evidence that plant canopies are a major source of such biological ice-nucleating particles in the air above the Alps, potentially affecting mixed-phase cloud development.
Stephen E. Schwartz
Biogeosciences, 21, 5045–5057, https://doi.org/10.5194/bg-21-5045-2024, https://doi.org/10.5194/bg-21-5045-2024, 2024
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Anticorrelation in uptake of atmospheric CO2 following pulse emission or abrupt cessation of emissions is examined in two key model intercomparison studies. In both studies net transfer coefficients from the atmosphere to the world ocean and the terrestrial biosphere are anticorrelated across models, reducing inter-model diversity in decrease of atmospheric CO2 following the perturbation, increasing uncertainties of global warming potentials and consequences of prospective emission reductions.
Qian Li, Gil Lerner, Einat Bar, Efraim Lewinsohn, and Eran Tas
Biogeosciences, 21, 4133–4147, https://doi.org/10.5194/bg-21-4133-2024, https://doi.org/10.5194/bg-21-4133-2024, 2024
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Our research indicates that instantaneous changes in meteorological parameters better reflect drought-induced changes in the emission rates of biogenic volatile organic compounds (BVOCs) from natural vegetation than their absolute values. However, following a small amount of irrigation, this trend became more moderate or reversed, accompanied by a dramatic increase in BVOC emission rates. These findings advance our understanding of BVOC emissions under climate change.
Pia Gottschalk, Aram Kalhori, Zhan Li, Christian Wille, and Torsten Sachs
Biogeosciences, 21, 3593–3616, https://doi.org/10.5194/bg-21-3593-2024, https://doi.org/10.5194/bg-21-3593-2024, 2024
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To improve the accuracy of spatial carbon exchange estimates, we evaluated simple linear models for net ecosystem exchange (NEE) and gross primary productivity (GPP) and how they can be used to upscale the CO2 exchange of agricultural fields. The models are solely driven by Sentinel-2-derived vegetation indices (VIs). Evaluations show that different VIs have variable power to estimate NEE and GPP of crops in different years. The overall performance is as good as results from complex crop models.
Liliana Scapucci, Ankit Shekhar, Sergio Aranda-Barranco, Anastasiia Bolshakova, Lukas Hörtnagl, Mana Gharun, and Nina Buchmann
Biogeosciences, 21, 3571–3592, https://doi.org/10.5194/bg-21-3571-2024, https://doi.org/10.5194/bg-21-3571-2024, 2024
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Forests face increased exposure to “compound soil and atmospheric drought” (CSAD) events due to global warming. We examined the impacts and drivers of CO2 fluxes during CSAD events at multiple layers of a deciduous forest over 18 years. Results showed reduced net ecosystem productivity and forest-floor respiration during CSAD events, mainly driven by soil and atmospheric drought. This unpredictability in forest CO2 fluxes jeopardises reforestation projects aimed at mitigating CO2 emissions.
Tamara Emmerichs, Yen-Sen Lu, and Domenico Taraborrelli
Biogeosciences, 21, 3251–3269, https://doi.org/10.5194/bg-21-3251-2024, https://doi.org/10.5194/bg-21-3251-2024, 2024
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We assess the representation of the plant response to surface water in a global atmospheric chemistry model. This sensitivity is crucial for the return of precipitation back into the atmosphere and thus significantly impacts the representation of weather as well as air quality. The newly implemented response function reduces this process and has a better comparison with satellite observations. This yields a higher intensity of unusual warm periods and higher production of air pollutants.
Nina L. H. Kinney, Charles A. Hepburn, Matthew I. Gibson, Daniel Ballesteros, and Thomas F. Whale
Biogeosciences, 21, 3201–3214, https://doi.org/10.5194/bg-21-3201-2024, https://doi.org/10.5194/bg-21-3201-2024, 2024
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Molecules released from plant pollen induce the formation of ice from supercooled water at temperatures warm enough to suggest an underlying function for this activity. In this study we show that ice nucleators are ubiquitous in pollen. We suggest the molecules responsible fulfil some unrelated biological function and nucleate ice incidentally. The ubiquity of ice-nucleating molecules in pollen and particularly active examples reveal a greater potential for pollen to impact weather and climate.
Max Gaber, Yanghui Kang, Guy Schurgers, and Trevor Keenan
Biogeosciences, 21, 2447–2472, https://doi.org/10.5194/bg-21-2447-2024, https://doi.org/10.5194/bg-21-2447-2024, 2024
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Gross primary productivity (GPP) describes the photosynthetic carbon assimilation, which plays a vital role in the carbon cycle. We can measure GPP locally, but producing larger and continuous estimates is challenging. Here, we present an approach to extrapolate GPP to a global scale using satellite imagery and automated machine learning. We benchmark different models and predictor variables and achieve an estimate that can capture 75 % of the variation in GPP.
Florian Wieland, Nadine Bothen, Ralph Schwidetzky, Teresa M. Seifried, Paul Bieber, Ulrich Pöschl, Konrad Meister, Mischa Bonn, Janine Fröhlich-Nowoisky, and Hinrich Grothe
EGUsphere, https://doi.org/10.5194/egusphere-2024-752, https://doi.org/10.5194/egusphere-2024-752, 2024
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Betula pendula is a widespread birch tree species containing ice nucleation agents that can trigger the freezing of cloud droplets, and thereby alter the evolution of clouds. Our study identifies three distinct ice-nucleating macromolecules (INMs) and aggregates of varying size that can nucleate ice at temperatures of up to -5.4 °C. Our findings suggest that these vegetation-derived particles may influence atmospheric processes, weather, and climate stronger than previously thought.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek Sebastian El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
Biogeosciences, 21, 2051–2085, https://doi.org/10.5194/bg-21-2051-2024, https://doi.org/10.5194/bg-21-2051-2024, 2024
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Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
Luana Krebs, Susanne Burri, Iris Feigenwinter, Mana Gharun, Philip Meier, and Nina Buchmann
Biogeosciences, 21, 2005–2028, https://doi.org/10.5194/bg-21-2005-2024, https://doi.org/10.5194/bg-21-2005-2024, 2024
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This study explores year-round forest-floor greenhouse gas (GHG) fluxes in a Swiss spruce forest. Soil temperature and snow depth affected forest-floor respiration, while CH4 uptake was linked to snow cover. Negligible N2O fluxes were observed. In 2022, a warm year, CO2 emissions notably increased. The study suggests rising forest-floor GHG emissions due to climate change, impacting carbon sink behavior. Thus, for future forest management, continuous year-round GHG flux measurements are crucial.
Simone Rodrigues, Glauber Cirino, Demerval Moreira, Andrea Pozzer, Rafael Palácios, Sung-Ching Lee, Breno Imbiriba, José Nogueira, Maria Isabel Vitorino, and George Vourlitis
Biogeosciences, 21, 843–868, https://doi.org/10.5194/bg-21-843-2024, https://doi.org/10.5194/bg-21-843-2024, 2024
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The radiative effects of atmospheric particles are still unknown for a wide variety of species and types of vegetation present in Amazonian biomes. We examined the effects of aerosols on solar radiation and their impacts on photosynthesis in an area of semideciduous forest in the southern Amazon Basin. Under highly smoky-sky conditions, our results show substantial photosynthetic interruption (20–70 %), attributed specifically to the decrease in solar radiation and leaf canopy temperature.
Ruben B. Schulte, Jordi Vilà-Guerau de Arellano, Susanna Rutledge-Jonker, Shelley van der Graaf, Jun Zhang, and Margreet C. van Zanten
Biogeosciences, 21, 557–574, https://doi.org/10.5194/bg-21-557-2024, https://doi.org/10.5194/bg-21-557-2024, 2024
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We analyzed measurements with the aim of finding relations between the surface atmosphere exchange of NH3 and the CO2 uptake and transpiration by vegetation. We found a high correlation of daytime NH3 emissions with both latent heat flux and photosynthetically active radiation. Very few simultaneous measurements of NH3, CO2 fluxes and meteorological variables exist at sub-diurnal timescales. This study paves the way to finding more robust relations between the NH3 exchange flux and CO2 uptake.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Carolina Voigt, Nick Rutter, Paul Mann, Jean-Daniel Sylvain, and Alexandre Roy
Biogeosciences, 20, 5087–5108, https://doi.org/10.5194/bg-20-5087-2023, https://doi.org/10.5194/bg-20-5087-2023, 2023
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We present an analysis of soil CO2 emissions in boreal and tundra regions during the non-growing season. We show that when the soil is completely frozen, soil temperature is the main control on CO2 emissions. When the soil is around the freezing point, with a mix of liquid water and ice, the liquid water content is the main control on CO2 emissions. This study highlights that the vegetation–snow–soil interactions must be considered to understand soil CO2 emissions during the non-growing season.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
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Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Joyson Ahongshangbam, Liisa Kulmala, Jesse Soininen, Yasmin Frühauf, Esko Karvinen, Yann Salmon, Anna Lintunen, Anni Karvonen, and Leena Järvi
Biogeosciences, 20, 4455–4475, https://doi.org/10.5194/bg-20-4455-2023, https://doi.org/10.5194/bg-20-4455-2023, 2023
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Urban vegetation is important for removing urban CO2 emissions and cooling. We studied the response of urban trees' functions (photosynthesis and transpiration) to a heatwave and drought at four urban green areas in the city of Helsinki. We found that tree water use was increased during heatwave and drought periods, but there was no change in the photosynthesis rates. The heat and drought conditions were severe at the local scale but were not excessive enough to restrict urban trees' functions.
Ryan Vella, Andrea Pozzer, Matthew Forrest, Jos Lelieveld, Thomas Hickler, and Holger Tost
Biogeosciences, 20, 4391–4412, https://doi.org/10.5194/bg-20-4391-2023, https://doi.org/10.5194/bg-20-4391-2023, 2023
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We investigated the effect of the El Niño–Southern Oscillation (ENSO) on biogenic volatile organic compound (BVOC) emissions from plants. ENSO events can cause a significant increase in these emissions, which have a long-term impact on the Earth's atmosphere. Persistent ENSO conditions can cause long-term changes in vegetation, resulting in even higher BVOC emissions. We link ENSO-induced emission anomalies with driving atmospheric and vegetational variables.
Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
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The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
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Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
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Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
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We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
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This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
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Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
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Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
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Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
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As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
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For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
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We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
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Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
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Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
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Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
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We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
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A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
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The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
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Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
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This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
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To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
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This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
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This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
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We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
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We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
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Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
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Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Junqi Wei, Xiaoyan Li, Lei Liu, Torben Røjle Christensen, Zhiyun Jiang, Yujun Ma, Xiuchen Wu, Hongyun Yao, and Efrén López-Blanco
Biogeosciences, 19, 861–875, https://doi.org/10.5194/bg-19-861-2022, https://doi.org/10.5194/bg-19-861-2022, 2022
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Although water availability has been linked to the response of ecosystem carbon (C) sink–source to climate warming, the mechanisms by which C uptake responds to soil moisture remain unclear. We explored how soil water and other environmental drivers modulate net C uptake in an alpine swamp meadow. Results reveal that nearly saturated soil conditions during warm seasons can help to maintain lower ecosystem respiration and therefore enhance the C sequestration capacity in this alpine swamp meadow.
Martijn M. T. A. Pallandt, Jitendra Kumar, Marguerite Mauritz, Edward A. G. Schuur, Anna-Maria Virkkala, Gerardo Celis, Forrest M. Hoffman, and Mathias Göckede
Biogeosciences, 19, 559–583, https://doi.org/10.5194/bg-19-559-2022, https://doi.org/10.5194/bg-19-559-2022, 2022
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Thawing of Arctic permafrost soils could trigger the release of vast amounts of carbon to the atmosphere, thus enhancing climate change. Our study investigated how well the current network of eddy covariance sites to monitor greenhouse gas exchange at local scales captures pan-Arctic flux patterns. We identified large coverage gaps, e.g., in Siberia, but also demonstrated that a targeted addition of relatively few sites can significantly improve network performance.
Cited articles
Allabay, M.: Temperate Forests (Biomes of the Earth), Chelsea House Publications, 2006.
Amann, M., Bertok, I., Borken-Kleefeld, J., Cofala, J., Heyes, C., Hoeglund-Isaksson, L., Klimont, Z., Nguyen, B., Posch, M., Rafaj, P., Sandler, R., Schoepp, W., Wagner, F., and Winiwarter, W.: Cost-effective control of air quality and greenhouse gases in Europe: Modeling and policy applications, Environ. Model. Softw., 26, 1489–1501, https://doi.org/10.1016/j.envsoft.2011.07.012, 2011.
Arneth, A., Niinemets, Ü., Pressley, S., Bäck, J., Hari, P., Karl, T., Noe, S., Prentice, I. C., Serça, D., Hickler, T., Wolf, A., and Smith, B.: Process-based estimates of terrestrial ecosystem isoprene emissions: incorporating the effects of a direct CO2-isoprene interaction, Atmos. Chem. Phys., 7, 31–53, https://doi.org/10.5194/acp-7-31-2007, 2007.
Ashmore, M.: Assessing the Future Global Impacts of Ozone on Vegetation, Plant, Cell and Environment, 28, 949–964, 2005.
Baghi, R., Helmig, D., Guenther, A., Duhl, T., and Daly, R.: Contribution of flowering trees to urban atmospheric biogenic volatile organic compound emissions, Biogeosciences, 9, 3777–3785, https://doi.org/10.5194/bg-9-3777-2012, 2012.
Beals, E. W.: Vegetation change along altitudinal gradients, Science, 165, 981–985, 1969.
Beck, P. S. A., Jonsson, P., Hogda, K.-A., Karlsen, S. R., Eklundh, L., and Skidmoree, A. K.: A ground-validated NDVI dataset for monitoring vegetation dynamics and mapping phenology in Fennoscandia and the Kola peninsula, Int. J. Remote Sens., 28, 4311–4330, https://doi.org/10.1080/01431160701241936, 2007.
Berge, E. and Jakobsen, H. A.: A regional scale multi-layer model for the calculation of long-term transport and deposition of air pollution in Europe, Tellus, 50, 205–223, 1998.
Bergström, R., Denier van der Gon, H. A. C., Prévôt, A. S. H., Yttri, K. E., and Simpson, D.: Modelling of organic aerosols over Europe (2002–2007) using a volatility basis set (VBS) framework: application of different assumptions regarding the formation of secondary organic aerosol, Atmos. Chem. Phys., 12, 8499–8527, https://doi.org/10.5194/acp-12-8499-2012, 2012.
Burkhardt, J., Flechard, C. R., Gresens, F., Mattsson, M., Jongejan, P. A. C., Erisman, J. W., Weidinger, T., Meszaros, R., Nemitz, E., and Sutton, M. A.: Modelling the dynamic chemical interactions of atmospheric ammonia with leaf surface wetness in a managed grassland canopy, Biogeosciences, 6, 67–84, https://doi.org/10.5194/bg-6-67-2009, 2009.
Caprio, J. M.: Flowering Dates, Potential Evapotranspiration and Water-use Efficiency of Syringa-vulgaris L At Different Elevations In the Western United-states-of-america, Agr. Forest Meteorol., 63, 55–71, https://doi.org/10.1016/0168-1923(93)90022-A, 1993.
Chmielewski, F. M. and Rotzer, T.: Response of tree phenology to climate change across Europe, Agr. Forest Meteorol., 108, 101–112, https://doi.org/10.1016/S0168-1923(01)00233-7, 2001.
Colette, A., Granier, C., Hodnebrog, Ø., Jakobs, H., Maurizi, A., Nyiri, A., Bessagnet, B., D'Angiola, A., D'Isidoro, M., Gauss, M., Meleux, F., Memmesheimer, M., Mieville, A., Rouïl, L., Russo, F., Solberg, S., Stordal, F., and Tampieri, F.: Air quality trends in Europe over the past decade: a first multi-model assessment, Atmos. Chem. Phys., 11, 11657–11678, https://doi.org/10.5194/acp-11-11657-2011, 2011.
Cox, P.: Description of the "TRIFFID" dynamic global model, Tech. rep., Handley Centre, 2001.
Doi, H. and Katano, I.: Phenological timings of leaf budburst with climate change in Japan, Agr. Forest Meteorol., 148, 512–516, https://doi.org/10.1016/j.agrformet.2007.10.002, 2008.
Duchemin, B., Goubier, J., and Courrier, G.: Monitoring phenological key stages and cycle duration of temperate deciduous forest ecosystems with NOAA/AVHRR data, Remote Sens. Environ., 67, 68–82, https://doi.org/10.1016/S0034-4257(98)00067-4, 1999.
Emberson, L., Simpson, D., Tuovinen, J. P., Ashmore, M. R., and Cambridge, H. M.: Towards a model of ozone deposition and stomatal uptake over Europe. 6/2000 EMEP MSC-W Note, The Norwegian Meteorological Institute, Oslo, Norway, 2000
Emberson, L. D., Ashmore, M. R., Simpson, D., Tuovinen, J. P., and Cambridge, H. M.: Modelling and mapping ozone deposition in Europe, Water Air Soil Pollut., 130, 577–582, 2001
Emberson, L.: Development and application of methods for modelling and mapping ozone deposition and stomatal flux in Europe, Annual/interim project report to UK Dept. for Environ., Food and Rural Affairs, project AW0601PP, Stockholm Environment Institute at York, UK, 2009.
Flechard, C. R., Nemitz, E., Smith, R. I., Fowler, D., Vermeulen, A. T., Bleeker, A., Erisman, J. W., Simpson, D., Zhang, L., Tang, Y. S., and Sutton, M. A.: Dry deposition of reactive nitrogen to European ecosystems: a comparison of inferential models across the NitroEurope network, Atmos. Chem. Phys., 11, 2703–2728, https://doi.org/10.5194/acp-11-2703-2011, 2011.
Foley, K. M., Roselle, S. J., Appel, K. W., Bhave, P. V., Pleim, J. E., Otte, T. L., Mathur, R., Sarwar, G., Young, J. O., Gilliam, R. C., Nolte, C. G., Kelly, J. T., Gilliland, A. B., and Bash, J. O.: Incremental testing of the Community Multiscale Air Quality (CMAQ) modeling system version 4.7, Geosci. Model Dev., 3, 205–226, https://doi.org/10.5194/gmd-3-205-2010, 2010.
Fowler, D., Pilegaard, K., Sutton, M. A., Ambus, P., Raivonen, M., Duyzer, J., D. Simpson, D., Fagerli, H., Fuzzi, S., Schjoerring, J. K., Granier, C., Neftel, A., Isaksen, I. S. A., Laj, P. Maione, M., Monks, P. S., Burkhardt, J., Daemmgen, U., Neirynck, J., Personne, E., Wichink-Kruit, R., Butterbach-Bahl, K., Flechard, C., Tuovinen, J. P., Coyle, M., Gerosa, G., Loubet, B., Altimir, N., Gruenhage, L., Ammann, C., Cieslik, S., Paoletti, E., Mikkelsen, T. N., Ro-Poulsen, H., Cellier, P., Cape, J. N., Horv{á}th, L., Loreto, F., Niinemets, Ü., Palmer, P. I., Rinne, J., Misztal, P., Nemitz, E., Nilsson, D., Pryor, S., Gallagher, M. W., Vesala, T., Skiba, U., Br{ü}eggemann, N., Zechmeister-Boltenstern, S., Williams, J., O'Dowd, C., Facchini, M. C., de Leeuw, G., Flossman, A., Chaumerliac, N., and Erisman, J. W.: Atmospheric composition change: Ecosystems-Atmosphere interactions, Atmos. Environ., 43, 5193–5267, 2009
Galän, C., Garcia-Mozo, H., Cari\"{n}anos, P., Alcázar, P., and Dom\'{i}nguez-Vilches, E.: The role of temperature in the onset of the Olea europaea L. pollen season in southwestern Spain, Int. J. Biometeorol., 45, 8–12, 2001.
Gauss, M., Benedictow, A., and Hjellbrekke, A.-G.: Photo-oxidants: validation and combined maps, Supplementary material to emep status report 1/2011, available online at: www.emep.int, The Norwegian Meteorological Institute, Oslo, Norway, 2011.
Going Dao-Yi, S. P.-J.: Northern hemispheric NDVI variations associated with large-scale climate indices in spring, Int. J. Remote Sens., 24, 2559–2566, 2003.
Grell, G. A., Peckham, S. E., Schmitz, R., McKeen, S. A., Frost, G., Skamarock, W. C., and Eder, B.: Fully coupled "online" chemistry within the WRF model, Atmos. Environ., 39, 6957–6975, 2005.
Guenther, A., Karl, T., Harley, P., Wiedinmyer, C., Palmer, P. I., and Geron, C.: Estimates of global terrestrial isoprene emissions using MEGAN (Model of Emissions of Gases and Aerosols from Nature), Atmos. Chem. Phys., 6, 3181–3210, https://doi.org/10.5194/acp-6-3181-2006, 2006.
Hänninen, H.: Modelling bud dormancy release in trees from cool and temperate regions. Acta Forestalia Fennica, 213, 1–47, 1990.
Hickler, T., Vohland, K., Feehan, J., Miller, P. A., Smith, B., Costa, L., Giesecke, T., Fronzek, S., Carter, T. R., Cramer, W., Kuehn, I., and Sykes, M. T.: Projecting the future distribution of European potential natural vegetation zones with a generalized, tree species-based dynamic vegetation model, Glob. Ecol. Biogeogr., 21, 50–63, 2012.
Jonson, J. E., Simpson, D., Fagerli, H., and Solberg, S.: Can we explain the trends in European ozone levels?, Atmos. Chem. Phys., 6, 51–66, https://doi.org/10.5194/acp-6-51-2006, 2006.
Jyske, T., Manner, M., Makinen, H., Nojd, P., Peltola, H., and Repo, T.: The effects of artificial soil frost on cambial activity and xylem formation in Norway spruce, Trees-Structure and Function, 26, 405–419, https://doi.org/10.1007/s00468-011-0601-7, 2012.
Karlsson, P. E., Tang, L., Sundberg, J., Chen, D., Lindskog, A., Pleijel, H.: Increasing risk for negative ozone impacts on vegetation in northern Sweden, Environ. Poll., 150, 96–106, 2007.
Klimes, L.: Life-forms and clonality of vascular plants along an altitudinal gradient in E Ladakh (NW Himalayas), Basic and Applied Ecology, 4, 317–328, https://doi.org/10.1078/1439-1791-00163, 2003.
Klingberg, J., Danielsson, H., Simpson, D., and Pleijel, H.: Comparison of modelled and measured ozone concentrations and meteorology for a site in south-west {S}weden: Implications for ozone uptake calculations, Environ. Poll., 115, 99–111, 2008.
Körner, C.: The use of `altitude' in ecological research, Trends Ecol. Evol., 22, 569–574, https://doi.org/10.1016/j.tree.2007.09.006, 2007.
Körner, C. and Basler, D.: Phenology Under Global Warming, Science, 327, 1461, https://doi.org/10.1126/science.1186473, 2010
Kramer, K., Leinonen, I., and Loustau, D.: The importance of phenology for the evaluation of impact of climate change on growth of boreal, temperate and Mediterranean forests ecosystems: an overview, Int. J. Biometeorol., 44, 67–75, https://doi.org/10.1007/s004840000066, 2000.
Krepkowski, J., Braeuning, A., Gebrekirstos, A., and Strobl, S.: Cambial growth dynamics and climatic control of different tree life forms in tropical mountain forest in Ethiopia, Trees-Structure and function, 25, 59–70, https://doi.org/10.1007/s00468-010-0460-7, 2011.
Kross, A., Fernandes, R., Seaquist, J., and Beaubien, E.: The effect of the temporal resolution of NDVI data on season onset dates and trends across Canadian broadleaf forests, Remote Sens. Environ., 115, 1564–1575, https://doi.org/10.1016/j.rse.2011.02.015, 2011.
Linkosalo, T.: Regularities and patterns in the spring phenology of some boreal trees, Silva Fennica, 33, 237–245, 1999.
Linkosalo, T., Lappalainen, H. K., and Hari, P.: A comparison of phenological models of leaf bud burst and flowering of boreal trees using independent observations, Tree Physiol., 28, 1873–1882, 2008.
Linkosalo, T., Ranta, H., Oksanen, A., Siljamo, P., Luomajoki, A., Kukkonen, J., and Sofiev, M.: A double-threshold temperature sum model for predicting the flowering duration and relative intensity of Betula pendula and B. pubescens, Agr. Forest Meteorol., 150, 1579–1584, https://doi.org/10.1016/j.agrformet.2010.08.007, 2010.
Loubet, B., Milford, C., Hill, P. W., Tang, Y. S., Cellier, P., and Sutton, M. A.: Seasonal variability of apoplastic NH4+ and pH in an intensively managed grassland. Plant and Soil, 238, 97–110, 2002.
LRTAP: Mapping critical levels for vegetation, in: Manual on Methodologies and Criteria for Mapping Critical Loads and Levels and Air Pollution Effects, Risks and Trends. Revision of 2010, edited by: Mills, G., UNECE Convention on Long-range Transboundary Air Pollution, International Cooperative Programme on Effects of Air Pollution on Natural Vegetation and Crops, updated version available at: http://www.rivm.nl/en/themasites/icpmm, 2010. %LINK CHECKED 2012
Luo, T. X., Pan, Y. D., Ouyang, H., Shi, P. L., Luo, J., Yu, Z. L., and Lu, Q.: Leaf area index and net primary productivity along subtropical to alpine gradients in the Tibetan Plateau, Glob. Ecol. Biogeogr., 13, 345–358, https://doi.org/10.1111/j.1466-822X.2004.00094.x, 2004.
Mahall, B. E., Thwing, L. K., and Tyler, C. M.: A quantitative comparison of two extremes in chaparral shrub phenology, FLORA, 205, 513–526, https://doi.org/10.1016/j.flora.2009.12.011, 2010.
Menzel, A.: Phänologie von Waldbäumen unter sich ändernden Klimabedingungen – Auswertung der Beobachtungen in den Internationalen Phäologischen Gärten und Mölichkeiten der Modellierung von Phänodaten, Universitätsbuchhandlung Heinrich Frank, 1997.
Menzel, A. and Fabian, P.: Growing season extended in Europe, Nature, 397, 659, https://doi.org/10.1038/17709, 1999.
Menzel, A., Sparks, T. H., Estrella, N., Koch, E., Aasa, A., Ahas, R., Alm-Kuebler, K., Bissolli, P., Braslavska, O., Briede, A., Chmielewski, F. M., Crepinsek, Z., Curnel, Y., Dahl, A., Defila, C., Donnelly, A., Filella, Y., Jatcza, K., Mage, F., Mestre, A., Nordli, O., Penuelas, J., Pirinen, P., Remisova, V., Scheifinger, H., Striz, M., Susnik, A., Van Vliet, A. J. H., Wielgolaski, F.-E., Zach, S., and Zust, A.: European phenological response to climate change matches the warming pattern, Glob. Change Biol., 12, 1969–1976, https://doi.org/10.1111/j.1365-2486.2006.01193.x, 2006.
Menzel, A., Estrella, N., Heitland, W., Susnik, A., Schleip, C., and Dose, V.: Bayesian analysis of the species-specific lengthening of the growing season in two European countries and the influence of an insect pest, Int. J. Biometeorol., 52, 209–218, 2008.
Mills, G., Pleijel, H., Braun, S., Büker, P., Bermejo, V., Calvo, E., Danielsson, H., Emberson, L., Grünhage, L., Fernández, I. G., Harmens, H., Hayes, F., Karlsson, P. E., and Simpson, D.: New stomatal flux-based critical levels for ozone effects on vegetation. Atmos. Environ., 45, 5064–5068, 2011.
Monks, P. S.: A review of the observations and origins of the spring ozone maximum. Atmos. Environ., 34, 3545–3561, 2000.
Monks, P. S., Granier, C., Fuzzi, S., Stohl, A., Williams, M., Akimoto, H., Amman, M., Baklanov, A., Baltensperger, U., Bey, I., Blake, N., Blake, R. S., Carslaw, K., Cooper, O. R., Dentener, F., Fowler. D., Fragkou, E., Frost, G., Generoso, S., Ginoux, P., Grewe, V., Guenther, A., Hansson, H. C., Henne, S., Hjorth, J., Hofzumahaus, A., Huntrieser, H., Isaksen, I. S. A., Jenkin, M. E., Kaiser, J., Kanakidou, M., Klimont, Z., Kulmala, M., Laj, P., Lawrence, M. G., Lee, J. D., Liousse, C., Maione, M., McFiggans, G., Metzger, A., Mieville, A., Moussiopoulos, N., Orlando, J. J., O'Dowd, C., Palmer, P. I., Parrish, D. D., Petzold, A., Platt, U., Poeschl, U., Pr{é}vot, A. S. H., Reeves, C. E., Reimann, S., Rudich, Y., Sellegri, K., Steinbrecher, R., Simpson, D., ten Brink, H., Theloke, J., van der Werf, G. R., Vautard, R., Vestreng,V., Vlachokostas, Ch., and von Glasow, R.: Atmospheric Composition Change – Global and Regional Air Quality Atmos. Environ., 43, 5268–5350, 2009.
Myeni, R. B., Keeling, C. D., Tucker, C. J., Asrar, G., and Nemani, R. R.: Increased plant growth in the northern high latitudes from 1981 and 1991, Nature, 386, 699–702, 1997.
Myking, T. and Heide, O. M.: Dormancy release and chilling requirement of buds of latitudinal ecotypes of Betula pendula and B. pubescens, Tree Physiol., 15, 697–704, 1995.
Myking, T.: Winter dormancy release and budburst in Betula pendula \sc Roth and B. pubescens \sc Ehrh. ecotypes, Phyton-annales Rei Botanicae, 39, 139–145, 1999.
O'Connor, B., Dwyer, E., Cawkwell, F., and Eklundh, L.: Spatio-temporal patterns in vegetation start of season across the island of Ireland using the MERIS Global Vegetation Index, ISPRS Journal of Photogrammetry and Remote Sensing, 68, 79–94, https://doi.org/10.1016/j.isprsjprs.2012.01.004, 2012.
PAN: PEP725 Pan European Phenology Data, online, http://www.zamg.ac.at/pep725/, 2011.
Partanen, J., Koski, V., and Hanninen, H.: Effects of photoperiod and temperature on the timing of bud burst in Norway spruce (Picea abies), Tree Physiol., 18, 811–816, 1998.
Pääkkönen, E., Metsärinne, S., Holopainen, T., and Kärenlampi, L.: The ozone sensitivity of birch (Betula pendula) in relation to the developmental stage of leaves, New Phytol., 132, 145–154, 1996.
Penuelas, J., Rutishauser, T., and Filella, L.: Phenology feedbacks on climate change, Science, 324, 887–888, 2009.
Pinto, C. A., Henriques, M. O., Figueiredo, J. P., David, J. S., Abreu, F. G., Pereira, J. S., Correia, I., and David, T. S.: Phenology and growth dynamics in Mediterranean evergreen oaks: Effects of environmental conditions and water relations, Forest Ecol. Manag., 262, 500–508, https://doi.org/10.1016/j.foreco.2011.04.018, 2011.
Polgar, C. A. and Primack, R. B.: Leaf-out phenology of temperate woody plants: from trees to ecosystems, New Phytol., 191, 926–941, https://doi.org/10.1111/j.1469-8137.2011.03803.x, 2011.
Rybski, D., Holsten, A., and Kropp, J. P.: Towards a unified characterization of phenological phases: Fluctuations and correlations with temperature, Physica A-statistical Mechanics and Its Applications, 390, 680–688, https://doi.org/10.1016/j.physa.2010.10.043, 2011.
Scheel, H. E., Areskoug, H., Geiss, H., Gomiscek, B. Granby, K., Haszpra, L., Klasinc, L., Kley, D., Laurila, T., Lindskog, A., Roemer, M., Schmitt, R., Simmonds, P., Solberg, S., and Toupance, G.: On the spatial distribution and seasonal variation of lower-troposphere ozone over Europe, J. Atmos. Chem., 28, 11–28, 1997.
Schurgers, G., Arneth, A., Holzinger, R., and Goldstein, A. H.: Process-based modelling of biogenic monoterpene emissions combining production and release from storage, Atmos. Chem. Phys., 9, 3409–3423, https://doi.org/10.5194/acp-9-3409-2009, 2009.
Siljamo, P., Sofiev, M., Ranta, H., Linkosalo, T., Kubin, E., Ahas, R., Genikhovich, E., Jatczak, K., Jato, V., Nekovar, J., Minin, A., Severova, E., and Shalaboda, V.: Representativeness of point-wise phenological Betula data collected in different parts of Europe, Glob. Ecol. Biogeogr., 17, 489–502, https://doi.org/10.1111/j.1466-8238.2008.00383.x, 2008.
Simpson, D.: Biogenic emissions in {E}urope 2: Implications for ozone control strategies, J. Geophys. Res., 100, 22891–22906, 1995.
Simpson, D., Emberson, L., Ashmore, M. R., and Tuovinen, J. P.: A comparison of two different approaches for mapping potential ozone damage to vegetation. A model study, Environ. Poll., 146, 715–725, 2007.
Simpson, D., Winiwarter, W., Börjesson, G., Cinderby, S., Ferreiro, A., Guenther, A., Hewitt, C. N., Janson, R., Khalil, M. A. K., Owen, S., Pierce, T. E., Puxbaum, H., Shearer, M., Skiba, U., Steinbrecher, R., Tarrasón, L., and Öquist, M. G.: Inventorying emissions from Nature in {E}urope, J. Geophys. Res., 104, 8113–8152, 1999.
Simpson, D., Butterbach-Bahl, K., Fagerli, H., Kesik, M., Skiba, U., and Tang, S.: Deposition and Emissions of Reactive Nitrogen over European Forests: A Modelling Study, Atmos. Environ., 40, 5712–5726, https://doi.org/10.1016/j.atmosenv.2006.04.063, 2006.
Simpson, D., Yttri, K., Klimont, Z., Kupiainen, K., Caseiro, A., Gelencs{é}r, A., Pio, C., and Legrand, M.: Modeling Carbonaceous Aerosol over Europe. Analysis of the CARBOSOL and EMEP EC/OC campaigns, J. Geophys. Res., 112, D23S14, https://doi.org/10.1029/2006JD008158, 2007.
Simpson, D., Benedictow, A., Berge, H., Bergström, R., Emberson, L. D., Fagerli, H., Flechard, C. R., Hayman, G. D., Gauss, M., Jonson, J. E., Jenkin, M. E., Nyíri, A., Richter, C., Semeena, V. S., Tsyro, S., Tuovinen, J.-P., Valdebenito, Á., and Wind, P.: The EMEP MSC-W chemical transport model – technical description, Atmos. Chem. Phys., 12, 7825–7865, https://doi.org/10.5194/acp-12-7825-2012, 2012.
Simpson, D., Tuovinen, J. P., Emberson, L. D., and Ashmore, M. R.: Characteristics of an ozone deposition module, Water Air Soil Pollut.: Focus, 1, 253–262, 2001.
Simpson, D., Tuovinen, J. P., Emberson, L. D., and Ashmore, M. R.: Characteristics of an ozone deposition module II}: sensitivity analysis, {Water Air Soil Pollut., 143, 123–137, 2003.
Sitch, S., Cox, P. M., Collins, W. J., and Huntingford, C.: Indirect radiative forcing of climate change through ozone effects on the land-carbon sink, Nature, 448, 791–795, 2007.
Skamarock, W. C. and Klemp, J. B.: A time-split nonhydrostatic atmospheric model for weather research and forecasting applications, J. Comp. Phys., 227, 3465–3485, https://doi.org/10.1016/j.jcp.2007.01.037, 2008.
Skjøth, C. A., Geels, C., Hvidberg, M., Hertel, O., Brandt, J., Frohn, L. M., Hansen, K. M., Hedegaard, G. B., Christensen, J. H., and Moseholm, L.: An inventory of tree species in Europe – An essential data input for air pollution modelling, Ecol. Modell., 217, 292–304, 2008.
Skjøth, C. A., Geels, C., Berge, H., Gyldenkærne, S., Fagerli, H., Ellermann, T., Frohn, L. M., Christensen, J., Hansen, K. M., Hansen, K., and Hertel, O.: Spatial and temporal variations in ammonia emissions – a freely accessible model code for Europe, Atmos. Chem. Phys., 11, 5221–5236, https://doi.org/10.5194/acp-11-5221-2011, 2011.
Sliggers, S. and Kakebeeke, W. (Eds.): Clearing the Air, 25 Years of the Convention on Long-Range Transboundary Air Pollution, United Nations, Economic Commission for Europe, Geneva, http://www.unece.org/env/lrtap, 2004.
Smith, B., Prentice, I. C., and Sykes, M. T.: Representation of vegetation dynamics in the modelling of terrestrial ecosystems: comparing two contrasting approaches within European climate space, Global Ecol. Biogeogr., 10, 621–637, https://doi.org/10.1046/j.1466-822X.2001.t01-1-00256.x, 2001.
Smith, B., Samuelsson, P., Wramneby, A., and Rummukainen, M.: A model of the coupled dynamics of climate, vegetation and terrestrial ecosystem biogeochemistry for regional applications, Tellus A, 63A, 87–106, https://doi.org/10.1111/j.1600-0870.2010.00477.x, 2011.
Sofiev, M., Siljamo, P., Ranta, H., Linkosalo, T., Jaeger, S., Rasmussen, A., Rantio-Lehtimaki, A., Severova, E., and Kukkonen, J.: A numerical model of birch pollen emission and dispersion in the atmosphere. Description of the emission module, Int. J. Biometeorol., 12, 1–14, https://doi.org/10.1007/s00484-012-0532-z, 2012.
Sofiev, M. and Tuovinen, J.-P.: Factors determining the robustness of AOT40 and other ozone exposure indices, Atmos. Environ., 35, 3521–3528, 2001.
Steltzer, H. and Post, E.: Seasons and life cycles, Science, 324, 886–887, 2009.
Sutton, M., Simpson, D., Levy, P., Smith, R., Reis, S., van Oijen, M., and de Vries, W.: Uncertainties in the relationship between atmospheric nitrogen deposition and forest carbon sequestration, Glob. Change Biol., 14, 1–7, https://doi.org/10.1111/j.1365-2486.2008.01636.x, 2008.
Sutton, M. A., Nemitz, E., Erisman, J. W., Beier,C., Butterbach-Bahl, K., Cellier, P., de Vries, W., Cotrufo, F., Skiba, U., Di Marco, C., Jones, S., Laville, P., Soussana, J. F., Loubet, B., Twigg, M., Famulari, D., Whitehead, J., Gallagher, M. W., Neftel, A., Flechard, C. R., Herrmann, B., Calanca, P. L., Schjoerring, J. K., Daemmgen, U., Horvath, L., Tang, Y. S., Emmett, B. A., Tietema, A., Penuelas, J., Kesik, M., Brueggemann, N., Pilegaard, K., Vesala, T., Campbell, C. L., Olesen, J. E., Dragosits, U., Theobald, M. R., Levy, P., Mobbs, D. C., Milne, R., Viovy, N., Vuichard, N., Smith, J. U., Smith, P., Bergamaschi, P., Fowler, D., and Reis, S.: Challenges in quantifying biosphere – atmosphere exchange of nitrogen species, Environ. Poll., 150, 125–139, 2007.
Sykes, M. T., Prentice, I. C., and Cramer, W.: A bioclimatic model for the potential distributions of north European tree species under present and future climates RID B-8221-2008, J. Biogeogr., 23, 203–233, 1996.
Tuovinen, J.-P., Emberson, L., and Simpson, D.: Modelling ozone fluxes to forests for risk assessment: status and prospects, Annals of Forest Science, 66, 401, https://doi.org/10.1051/forest/2009024, 2009.
Tuovinen, J. P., Simpson, D., Ashmore, M. R., Emberson, L. D., and Gerosa, G.: Robustness of modelled ozone exposures and doses, Environ. Poll., 146, 578–586, 2007.
Tuovinen, J.-P., Ashmore, M., Emberson, L., and Simpson, D.: Testing and improving the EMEP ozone deposition module, Atmos. Environ., 38, 2373–2385, 2004.
Tuovinen, J.-P., Simpson, D., Mikkelsen, T., Emberson, L., M., M. R. A., Aurela, Cambridge, H. M., Hovmand, M. F., Jensen, N. O., Laurila, T., Pilegaard, K., and Ro-Poulsen, H.: Comparisons of measured and modelled ozone deposition to forests in {N}orthern {E}urope, Water, Air and Soil Pollution: Focus, 1, 263–274, 2001.
UNECE/WHO: Modelling and Assessment of the Health Impact of Particulate Matter and Ozone, United Nations Economic Commission for Europe, Geneva Switzerland, 2004.
Vieno, M., Dore, A. J., Stevenson, D. S., Doherty, R., Heal, M. R., Reis, S., Hallsworth, S., Tarrason, L., Wind, P., Fowler, D., Simpson, D., and Sutton, M. A.: Modelling surface ozone during the 2003 heat-wave in the UK, Atmos. Chem. Phys., 10, 7963–7978, https://doi.org/10.5194/acp-10-7963-2010, 2010.
Villordon, A., LaBonte, D., and Firon, N.: Development of a simple thermal time method for describing the onset of morpho-anatomical features related to sweetpotato storage root formation, Scientia Horticulturae, 121, 374–377, https://doi.org/10.1016/j.scienta.2009.02.013, 2009.
Wang, J. Y.: A critique of the heat unit approach to plant-response studies, Ecology, 41, 785–790, https://doi.org/10.2307/1931815, 1960.
Wiedinmyer, C., Guenther, A., Harley, P., Hewitt, C., Geron, C., Artaxo, P., Steinbrecher, R., and Rasmussen, R.: Global organic emissions from vegetation, in: Emissions of Atmospheric Trace Compounds, edited by: Granier, C., Artaxo, P., and Reeves, C. E., 115–170, Kluwer Academic Publishers, 2004.
Willmott, C. J.: Some comments on the evaluation of model performance, B. Am. Meteorol. Soc., 63, 1309–1313, https://doi.org/10.1175/1520-0477(1982)063<1309:SCOTEO>2.0.CO;2, 1982.
Wipfler, E. L., Metselaar, K., van Dam, J. C., Feddes, R. A., van Meijgaard, E., van Ulft, L. H., van den Hurk, B., Zwart, S. J., and Bastiaanssen, W. G. M.: Seasonal evaluation of the land surface scheme HTESSEL against remote sensing derived energy fluxes of the Transdanubian region in Hungary, Hydrol. Earth Syst. Sci., 15, 1257–1271, https://doi.org/10.5194/hess-15-1257-2011, 2011.
Zhang, X., Friedl, M., Schaaf, C., and Strahler, A.: Climate controls on vegetation phenological patterns in northern mid- and high latitudes inferred from MODIS data, Global Change Biol., 10, 1133–1145, https://doi.org/10.1111/j.1529-8817.2003.00784.x, 2004
Zhang, Y.: Online-coupled meteorology and chemistry models: history, current status, and outlook, Atmos. Chem. Phys., 8, 2895–2932, https://doi.org/10.5194/acp-8-2895-2008, 2008.
Ziello, C., Estrella, N., Kostova, M., Koch, E., and Menzel, A.: Influence of altitude on phenology of selected plant species in the Alpine region (1971–2000), Clim. Res., 39, 227–234, https://doi.org/10.3354/cr00822, 2009.
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