Articles | Volume 12, issue 5
https://doi.org/10.5194/bg-12-1299-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-1299-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
03 Mar 2015
Research article |
| 03 Mar 2015
Constraining ecosystem carbon dynamics in a data-limited world: integrating ecological "common sense" in a model–data fusion framework
A. A. Bloom
CORRESPONDING AUTHOR
School of GeoSciences, University of Edinburgh, Edinburgh, UK
now at: Jet Propulsion Laboratory, California Institute of Technology, Pasadena, USA
M. Williams
School of GeoSciences, University of Edinburgh, Edinburgh, UK
Related authors
Sabour Baray, Daniel J. Jacob, Joannes D. Maasakkers, Jian-Xiong Sheng, Melissa P. Sulprizio, Dylan B. A. Jones, A. Anthony Bloom, and Robert McLaren
Atmos. Chem. Phys., 21, 18101–18121, https://doi.org/10.5194/acp-21-18101-2021, https://doi.org/10.5194/acp-21-18101-2021, 2021
Short summary
Short summary
We use 2010–2015 surface and satellite observations to disentangle methane from anthropogenic and natural sources in Canada. Using a chemical transport model (GEOS-Chem), the mismatch between modelled and observed methane concentrations can be used to infer emissions according to Bayesian statistics. Compared to prior knowledge, we show higher anthropogenic emissions attributed to energy and/or agriculture in Western Canada and lower natural emissions from Boreal wetlands.
A. Anthony Bloom, Kevin W. Bowman, Junjie Liu, Alexandra G. Konings, John R. Worden, Nicholas C. Parazoo, Victoria Meyer, John T. Reager, Helen M. Worden, Zhe Jiang, Gregory R. Quetin, T. Luke Smallman, Jean-François Exbrayat, Yi Yin, Sassan S. Saatchi, Mathew Williams, and David S. Schimel
Biogeosciences, 17, 6393–6422, https://doi.org/10.5194/bg-17-6393-2020, https://doi.org/10.5194/bg-17-6393-2020, 2020
Short summary
Short summary
We use a model of the 2001–2015 tropical land carbon cycle, with satellite measurements of land and atmospheric carbon, to disentangle lagged and concurrent effects (due to past and concurrent meteorological events, respectively) on annual land–atmosphere carbon exchanges. The variability of lagged effects explains most 2001–2015 inter-annual carbon flux variations. We conclude that concurrent and lagged effects need to be accurately resolved to better predict the world's land carbon sink.
Jean-François Exbrayat, A. Anthony Bloom, Pete Falloon, Akihiko Ito, T. Luke Smallman, and Mathew Williams
Earth Syst. Dynam., 9, 153–165, https://doi.org/10.5194/esd-9-153-2018, https://doi.org/10.5194/esd-9-153-2018, 2018
Short summary
Short summary
We use global observations of current terrestrial net primary productivity (NPP) to constrain the uncertainty in large ensemble 21st century projections of NPP under a "business as usual" scenario using a skill-based multi-model averaging technique. Our results show that this procedure helps greatly reduce the uncertainty in global projections of NPP. We also identify regions where uncertainties in models and observations remain too large to confidently conclude a sign of the change of NPP.
Darren Slevin, Simon F. B. Tett, Jean-François Exbrayat, A. Anthony Bloom, and Mathew Williams
Geosci. Model Dev., 10, 2651–2670, https://doi.org/10.5194/gmd-10-2651-2017, https://doi.org/10.5194/gmd-10-2651-2017, 2017
A. Anthony Bloom, Kevin W. Bowman, Meemong Lee, Alexander J. Turner, Ronny Schroeder, John R. Worden, Richard Weidner, Kyle C. McDonald, and Daniel J. Jacob
Geosci. Model Dev., 10, 2141–2156, https://doi.org/10.5194/gmd-10-2141-2017, https://doi.org/10.5194/gmd-10-2141-2017, 2017
Short summary
Short summary
Wetland emissions are a principal source of uncertainty in the global atmospheric methane budget due to poor knowledge of wetland processes. We construct a wetland methane emission and uncertainty dataset for use in global atmospheric methane models. Our wetland model ensemble is based on static wetland maps, satellite-derived inundation and carbon cycle models. The ensemble performs favourably against regional flux estimates and atmospheric methane measurements relative to previous studies.
A. Anthony Bloom, Thomas Lauvaux, John Worden, Vineet Yadav, Riley Duren, Stanley P. Sander, and David S. Schimel
Atmos. Chem. Phys., 16, 15199–15218, https://doi.org/10.5194/acp-16-15199-2016, https://doi.org/10.5194/acp-16-15199-2016, 2016
Short summary
Short summary
Understanding terrestrial carbon processes is a major challenge in climate science. We define the satellite system required to understand greenhouse gas biogeochemistry: our study is focused on Amazon wetland CH4 emissions. We find that future geostationary satellites will provide the CH4 measurements required to understand wetland CH4 processes. Low-earth orbit satellites will be unable to resolve wetland CH4 processes due to a low number of cloud-free CH4 measurements over the Amazon basin.
Xiaoran Zhu, Dong Chen, Maruko Kogure, Elizabeth Hoy, Logan T. Berner, Amy L. Breen, Abhishek Chatterjee, Scott J. Davidson, Gerald V. Frost, Teresa N. Hollingsworth, Go Iwahana, Randi R. Jandt, Anja N. Kade, Tatiana V. Loboda, Matt J. Macander, Michelle Mack, Charles E. Miller, Eric A. Miller, Susan M. Natali, Martha K. Raynolds, Adrian V. Rocha, Shiro Tsuyuzaki, Craig E. Tweedie, Donald A. Walker, Mathew Williams, Xin Xu, Yingtong Zhang, Nancy French, and Scott Goetz
Earth Syst. Sci. Data, 16, 3687–3703, https://doi.org/10.5194/essd-16-3687-2024, https://doi.org/10.5194/essd-16-3687-2024, 2024
Short summary
Short summary
The Arctic tundra is experiencing widespread physical and biological changes, largely in response to warming, yet scientific understanding of tundra ecology and change remains limited due to relatively limited accessibility and studies compared to other terrestrial biomes. To support synthesis research and inform future studies, we created the Synthesized Alaskan Tundra Field Dataset (SATFiD), which brings together field datasets and includes vegetation, active-layer, and fire properties.
Mathew Williams, David T. Milodowski, Thomas Luke Smallman, Kyle G. Dexter, Gabi C. Hegerl, Iain M. McNicol, Michael O'Sullivan, Carla M. Roesch, Casey M. Ryan, Stephen Sitch, and Aude Valade
EGUsphere, https://doi.org/10.5194/egusphere-2024-2497, https://doi.org/10.5194/egusphere-2024-2497, 2024
Short summary
Short summary
Southern African woodlands are important in both regional and global carbon cycles. A new carbon analysis created by combining satellite data with ecosystem modelling shows that the region has a neutral C balance overall, but with important spatial variations. Patterns of biomass and C balance across the region are the outcome of climate controls on production, vegetation-fire interactions, which determine mortality of vegetation, and spatial variations in vegetation function.
Luana S. Basso, Chris Wilson, Martyn P. Chipperfield, Graciela Tejada, Henrique L. G. Cassol, Egídio Arai, Mathew Williams, T. Luke Smallman, Wouter Peters, Stijn Naus, John B. Miller, and Manuel Gloor
Atmos. Chem. Phys., 23, 9685–9723, https://doi.org/10.5194/acp-23-9685-2023, https://doi.org/10.5194/acp-23-9685-2023, 2023
Short summary
Short summary
The Amazon’s carbon balance may have changed due to forest degradation, deforestation and warmer climate. We used an atmospheric model and atmospheric CO2 observations to quantify Amazonian carbon emissions (2010–2018). The region was a small carbon source to the atmosphere, mostly due to fire emissions. Forest uptake compensated for ~ 50 % of the fire emissions, meaning that the remaining forest is still a small carbon sink. We found no clear evidence of weakening carbon uptake over the period.
David T. Milodowski, T. Luke Smallman, and Mathew Williams
Biogeosciences, 20, 3301–3327, https://doi.org/10.5194/bg-20-3301-2023, https://doi.org/10.5194/bg-20-3301-2023, 2023
Short summary
Short summary
Model–data fusion (MDF) allows us to combine ecosystem models with Earth observation data. Fragmented landscapes, with a mosaic of contrasting ecosystems, pose a challenge for MDF. We develop a novel MDF framework to estimate the carbon balance of fragmented landscapes and show the importance of accounting for ecosystem heterogeneity to prevent scale-dependent bias in estimated carbon fluxes, disturbance fluxes in particular, and to improve ecological fidelity of the calibrated models.
Vasileios Myrgiotis, Thomas Luke Smallman, and Mathew Williams
Biogeosciences, 19, 4147–4170, https://doi.org/10.5194/bg-19-4147-2022, https://doi.org/10.5194/bg-19-4147-2022, 2022
Short summary
Short summary
This study shows that livestock grazing and grass cutting can determine whether a grassland is adding (source) or removing (sink) carbon (C) to/from the atmosphere. The annual C balance of 1855 managed grassland fields in Great Britain was quantified for 2017–2018 using process modelling and earth observation data. The examined fields were, on average, small C sinks, but the summer drought of 2018 led to a 9-fold increase in the number of fields that became C sources in 2018 compared to 2017.
Yan Yang, A. Anthony Bloom, Shuang Ma, Paul Levine, Alexander Norton, Nicholas C. Parazoo, John T. Reager, John Worden, Gregory R. Quetin, T. Luke Smallman, Mathew Williams, Liang Xu, and Sassan Saatchi
Geosci. Model Dev., 15, 1789–1802, https://doi.org/10.5194/gmd-15-1789-2022, https://doi.org/10.5194/gmd-15-1789-2022, 2022
Short summary
Short summary
Global carbon and water have large uncertainties that are hard to quantify in current regional and global models. Field observations provide opportunities for better calibration and validation of current modeling of carbon and water. With the unique structure of CARDAMOM, we have utilized the data assimilation capability and designed the benchmarking framework by using field observations in modeling. Results show that data assimilation improves model performance in different aspects.
Stephanie G. Stettz, Nicholas C. Parazoo, A. Anthony Bloom, Peter D. Blanken, David R. Bowling, Sean P. Burns, Cédric Bacour, Fabienne Maignan, Brett Raczka, Alexander J. Norton, Ian Baker, Mathew Williams, Mingjie Shi, Yongguang Zhang, and Bo Qiu
Biogeosciences, 19, 541–558, https://doi.org/10.5194/bg-19-541-2022, https://doi.org/10.5194/bg-19-541-2022, 2022
Short summary
Short summary
Uncertainty in the response of photosynthesis to temperature poses a major challenge to predicting the response of forests to climate change. In this paper, we study how photosynthesis in a mountainous evergreen forest is limited by temperature. This study highlights that cold temperature is a key factor that controls spring photosynthesis. Including the cold-temperature limitation in an ecosystem model improved its ability to simulate spring photosynthesis.
Sabour Baray, Daniel J. Jacob, Joannes D. Maasakkers, Jian-Xiong Sheng, Melissa P. Sulprizio, Dylan B. A. Jones, A. Anthony Bloom, and Robert McLaren
Atmos. Chem. Phys., 21, 18101–18121, https://doi.org/10.5194/acp-21-18101-2021, https://doi.org/10.5194/acp-21-18101-2021, 2021
Short summary
Short summary
We use 2010–2015 surface and satellite observations to disentangle methane from anthropogenic and natural sources in Canada. Using a chemical transport model (GEOS-Chem), the mismatch between modelled and observed methane concentrations can be used to infer emissions according to Bayesian statistics. Compared to prior knowledge, we show higher anthropogenic emissions attributed to energy and/or agriculture in Western Canada and lower natural emissions from Boreal wetlands.
Thomas Luke Smallman, David Thomas Milodowski, Eráclito Sousa Neto, Gerbrand Koren, Jean Ometto, and Mathew Williams
Earth Syst. Dynam., 12, 1191–1237, https://doi.org/10.5194/esd-12-1191-2021, https://doi.org/10.5194/esd-12-1191-2021, 2021
Short summary
Short summary
Our study provides a novel assessment of model parameter, structure and climate change scenario uncertainty contribution to future predictions of the Brazilian terrestrial carbon stocks to 2100. We calibrated (2001–2017) five models of the terrestrial C cycle of varied structure. The calibrated models were then projected to 2100 under multiple climate change scenarios. Parameter uncertainty dominates overall uncertainty, being ~ 40 times that of either model structure or climate change scenario.
Caroline A. Famiglietti, T. Luke Smallman, Paul A. Levine, Sophie Flack-Prain, Gregory R. Quetin, Victoria Meyer, Nicholas C. Parazoo, Stephanie G. Stettz, Yan Yang, Damien Bonal, A. Anthony Bloom, Mathew Williams, and Alexandra G. Konings
Biogeosciences, 18, 2727–2754, https://doi.org/10.5194/bg-18-2727-2021, https://doi.org/10.5194/bg-18-2727-2021, 2021
Short summary
Short summary
Model uncertainty dominates the spread in terrestrial carbon cycle predictions. Efforts to reduce it typically involve adding processes, thereby increasing model complexity. However, if and how model performance scales with complexity is unclear. Using a suite of 16 structurally distinct carbon cycle models, we find that increased complexity only improves skill if parameters are adequately informed. Otherwise, it can degrade skill, and an intermediate-complexity model is optimal.
A. Anthony Bloom, Kevin W. Bowman, Junjie Liu, Alexandra G. Konings, John R. Worden, Nicholas C. Parazoo, Victoria Meyer, John T. Reager, Helen M. Worden, Zhe Jiang, Gregory R. Quetin, T. Luke Smallman, Jean-François Exbrayat, Yi Yin, Sassan S. Saatchi, Mathew Williams, and David S. Schimel
Biogeosciences, 17, 6393–6422, https://doi.org/10.5194/bg-17-6393-2020, https://doi.org/10.5194/bg-17-6393-2020, 2020
Short summary
Short summary
We use a model of the 2001–2015 tropical land carbon cycle, with satellite measurements of land and atmospheric carbon, to disentangle lagged and concurrent effects (due to past and concurrent meteorological events, respectively) on annual land–atmosphere carbon exchanges. The variability of lagged effects explains most 2001–2015 inter-annual carbon flux variations. We conclude that concurrent and lagged effects need to be accurately resolved to better predict the world's land carbon sink.
Sophie Flack-Prain, Patrick Meir, Yadvinder Malhi, Thomas Luke Smallman, and Mathew Williams
Biogeosciences, 16, 4463–4484, https://doi.org/10.5194/bg-16-4463-2019, https://doi.org/10.5194/bg-16-4463-2019, 2019
Short summary
Short summary
Across the Amazon rainforest, trees take in carbon through photosynthesis. However, photosynthesis across the basin is threatened by predicted shifts in rainfall patterns. To unpick how changes in rainfall affect photosynthesis, we use a model which combines climate data with our knowledge of photosynthesis and other plant processes. We find that stomatal constraints are less important, and instead shifts in leaf surface area and leaf properties drive changes in photosynthesis with rainfall.
Thomas Luke Smallman and Mathew Williams
Geosci. Model Dev., 12, 2227–2253, https://doi.org/10.5194/gmd-12-2227-2019, https://doi.org/10.5194/gmd-12-2227-2019, 2019
Short summary
Short summary
Photosynthesis and evapotranspiration are processes with global significance for climate, carbon and water cycling. Process-orientated simulation of these processes and their interactions have till now come at high computational cost. Here we present a new coupled model of intermediate complexity operating at orders of magnitude greater speed. Independent evaluation at FLUXNET sites for a single, global parameterization shows good agreement, with a typical R2 value of ~ 0.60.
Efrén López-Blanco, Jean-François Exbrayat, Magnus Lund, Torben R. Christensen, Mikkel P. Tamstorf, Darren Slevin, Gustaf Hugelius, Anthony A. Bloom, and Mathew Williams
Earth Syst. Dynam., 10, 233–255, https://doi.org/10.5194/esd-10-233-2019, https://doi.org/10.5194/esd-10-233-2019, 2019
Short summary
Short summary
The terrestrial CO2 exchange in Arctic ecosystems plays an important role in the global carbon cycle and is particularly sensitive to the ongoing warming experienced in recent years. To improve our understanding of the atmosphere–biosphere interplay, we evaluated the state of the terrestrial pan-Arctic carbon cycling using a promising data assimilation system in the first 15 years of the 21st century. This is crucial when it comes to making predictions about the future state of the carbon cycle.
Vasileios Myrgiotis, Mathew Williams, Robert M. Rees, and Cairistiona F. E. Topp
Biogeosciences, 16, 1641–1655, https://doi.org/10.5194/bg-16-1641-2019, https://doi.org/10.5194/bg-16-1641-2019, 2019
Short summary
Short summary
This study focuses on a northwestern European cropland region and shows that the type of crop growing on a soil has notable effects on the emission of nitrous oxide (N2O – a greenhouse gas) from that soil. It was found that N2O emissions from soils under oilseed cultivation are significantly higher than soils under cereal cultivation. This variation is mostly explained by the fact that oilseeds require more nitrogen (fertiliser) than cereals, especially at early crop growth stages.
Anne Sofie Lansø, Thomas Luke Smallman, Jesper Heile Christensen, Mathew Williams, Kim Pilegaard, Lise-Lotte Sørensen, and Camilla Geels
Biogeosciences, 16, 1505–1524, https://doi.org/10.5194/bg-16-1505-2019, https://doi.org/10.5194/bg-16-1505-2019, 2019
Short summary
Short summary
Although coastal regions only amount to 7 % of the global oceans, their contribution to the global oceanic surface exchange of CO2 is much greater. In this study, we gain detailed insight into how these coastal marine fluxes compare to CO2 exchange from coastal land regions. Annually, the coastal marine exchanges are smaller than the total uptake of CO2 from the land surfaces within the study area but comparable in size to terrestrial fluxes from individual land cover classes of the region.
Emily D. White, Matthew Rigby, Mark F. Lunt, T. Luke Smallman, Edward Comyn-Platt, Alistair J. Manning, Anita L. Ganesan, Simon O'Doherty, Ann R. Stavert, Kieran Stanley, Mathew Williams, Peter Levy, Michel Ramonet, Grant L. Forster, Andrew C. Manning, and Paul I. Palmer
Atmos. Chem. Phys., 19, 4345–4365, https://doi.org/10.5194/acp-19-4345-2019, https://doi.org/10.5194/acp-19-4345-2019, 2019
Short summary
Short summary
Understanding carbon dioxide (CO2) fluxes from the terrestrial biosphere on a national scale is important for evaluating land use strategies to mitigate climate change. We estimate emissions of CO2 from the UK biosphere using atmospheric data in a top-down approach. Our findings show that bottom-up estimates from models of biospheric fluxes overestimate the amount of CO2 uptake in summer. This suggests these models wrongly estimate or omit key processes, e.g. land disturbance due to harvest.
Jean-François Exbrayat, A. Anthony Bloom, Pete Falloon, Akihiko Ito, T. Luke Smallman, and Mathew Williams
Earth Syst. Dynam., 9, 153–165, https://doi.org/10.5194/esd-9-153-2018, https://doi.org/10.5194/esd-9-153-2018, 2018
Short summary
Short summary
We use global observations of current terrestrial net primary productivity (NPP) to constrain the uncertainty in large ensemble 21st century projections of NPP under a "business as usual" scenario using a skill-based multi-model averaging technique. Our results show that this procedure helps greatly reduce the uncertainty in global projections of NPP. We also identify regions where uncertainties in models and observations remain too large to confidently conclude a sign of the change of NPP.
Rhys Whitley, Jason Beringer, Lindsay B. Hutley, Gabriel Abramowitz, Martin G. De Kauwe, Bradley Evans, Vanessa Haverd, Longhui Li, Caitlin Moore, Youngryel Ryu, Simon Scheiter, Stanislaus J. Schymanski, Benjamin Smith, Ying-Ping Wang, Mathew Williams, and Qiang Yu
Biogeosciences, 14, 4711–4732, https://doi.org/10.5194/bg-14-4711-2017, https://doi.org/10.5194/bg-14-4711-2017, 2017
Short summary
Short summary
This paper attempts to review some of the current challenges faced by the modelling community in simulating the behaviour of savanna ecosystems. We provide a particular focus on three dynamic processes (phenology, root-water access, and fire) that are characteristic of savannas, which we believe are not adequately represented in current-generation terrestrial biosphere models. We highlight reasons for these misrepresentations, possible solutions and a future direction for research in this area.
Efrén López-Blanco, Magnus Lund, Mathew Williams, Mikkel P. Tamstorf, Andreas Westergaard-Nielsen, Jean-François Exbrayat, Birger U. Hansen, and Torben R. Christensen
Biogeosciences, 14, 4467–4483, https://doi.org/10.5194/bg-14-4467-2017, https://doi.org/10.5194/bg-14-4467-2017, 2017
Short summary
Short summary
An improvement in our process-based understanding of CO2 exchanges in the Arctic and their climate sensitivity is critical. With continued warming temperatures and longer growing seasons, tundra systems will likely increase rates of C cycling, although shifts in sink strength could take place, challenging the forecast of upcoming C states. In this context, we investigated the functional responses of C exchange to environmental characteristics across 8 consecutive years in West Greenland.
Darren Slevin, Simon F. B. Tett, Jean-François Exbrayat, A. Anthony Bloom, and Mathew Williams
Geosci. Model Dev., 10, 2651–2670, https://doi.org/10.5194/gmd-10-2651-2017, https://doi.org/10.5194/gmd-10-2651-2017, 2017
A. Anthony Bloom, Kevin W. Bowman, Meemong Lee, Alexander J. Turner, Ronny Schroeder, John R. Worden, Richard Weidner, Kyle C. McDonald, and Daniel J. Jacob
Geosci. Model Dev., 10, 2141–2156, https://doi.org/10.5194/gmd-10-2141-2017, https://doi.org/10.5194/gmd-10-2141-2017, 2017
Short summary
Short summary
Wetland emissions are a principal source of uncertainty in the global atmospheric methane budget due to poor knowledge of wetland processes. We construct a wetland methane emission and uncertainty dataset for use in global atmospheric methane models. Our wetland model ensemble is based on static wetland maps, satellite-derived inundation and carbon cycle models. The ensemble performs favourably against regional flux estimates and atmospheric methane measurements relative to previous studies.
A. Anthony Bloom, Thomas Lauvaux, John Worden, Vineet Yadav, Riley Duren, Stanley P. Sander, and David S. Schimel
Atmos. Chem. Phys., 16, 15199–15218, https://doi.org/10.5194/acp-16-15199-2016, https://doi.org/10.5194/acp-16-15199-2016, 2016
Short summary
Short summary
Understanding terrestrial carbon processes is a major challenge in climate science. We define the satellite system required to understand greenhouse gas biogeochemistry: our study is focused on Amazon wetland CH4 emissions. We find that future geostationary satellites will provide the CH4 measurements required to understand wetland CH4 processes. Low-earth orbit satellites will be unable to resolve wetland CH4 processes due to a low number of cloud-free CH4 measurements over the Amazon basin.
Rhys Whitley, Jason Beringer, Lindsay B. Hutley, Gab Abramowitz, Martin G. De Kauwe, Remko Duursma, Bradley Evans, Vanessa Haverd, Longhui Li, Youngryel Ryu, Benjamin Smith, Ying-Ping Wang, Mathew Williams, and Qiang Yu
Biogeosciences, 13, 3245–3265, https://doi.org/10.5194/bg-13-3245-2016, https://doi.org/10.5194/bg-13-3245-2016, 2016
Short summary
Short summary
In this study we assess how well terrestrial biosphere models perform at predicting water and carbon cycling for savanna ecosystems. We apply our models to five savanna sites in Northern Australia and highlight key causes for model failure. Our assessment of model performance uses a novel benchmarking system that scores a model’s predictive ability based on how well it is utilizing its driving information. On average, we found the models as a group display only moderate levels of performance.
C. Safta, D. M. Ricciuto, K. Sargsyan, B. Debusschere, H. N. Najm, M. Williams, and P. E. Thornton
Geosci. Model Dev., 8, 1899–1918, https://doi.org/10.5194/gmd-8-1899-2015, https://doi.org/10.5194/gmd-8-1899-2015, 2015
Short summary
Short summary
In this paper we propose a probabilistic framework for an uncertainty quantification study of a carbon cycle model and focus on the comparison between steady-state and transient
simulation setups. We study model parameters via global sensitivity analysis and employ a Bayesian approach to calibrate these parameters using NEE observations at the Harvard Forest site. The calibration results are then used to assess the predictive skill of the model via posterior predictive checks.
L. Rowland, A. Harper, B. O. Christoffersen, D. R. Galbraith, H. M. A. Imbuzeiro, T. L. Powell, C. Doughty, N. M. Levine, Y. Malhi, S. R. Saleska, P. R. Moorcroft, P. Meir, and M. Williams
Geosci. Model Dev., 8, 1097–1110, https://doi.org/10.5194/gmd-8-1097-2015, https://doi.org/10.5194/gmd-8-1097-2015, 2015
Short summary
Short summary
This study evaluates the capability of five vegetation models to simulate the response of forest productivity to changes in temperature and drought, using data collected from an Amazonian forest. This study concludes that model consistencies in the responses of net canopy carbon production to temperature and precipitation change were the result of inconsistently modelled leaf-scale process responses and substantial variation in modelled leaf area responses.
D. Slevin, S. F. B. Tett, and M. Williams
Geosci. Model Dev., 8, 295–316, https://doi.org/10.5194/gmd-8-295-2015, https://doi.org/10.5194/gmd-8-295-2015, 2015
G. B. Bonan, M. Williams, R. A. Fisher, and K. W. Oleson
Geosci. Model Dev., 7, 2193–2222, https://doi.org/10.5194/gmd-7-2193-2014, https://doi.org/10.5194/gmd-7-2193-2014, 2014
R. Q. Thomas and M. Williams
Geosci. Model Dev., 7, 2015–2037, https://doi.org/10.5194/gmd-7-2015-2014, https://doi.org/10.5194/gmd-7-2015-2014, 2014
G. Xenakis and M. Williams
Geosci. Model Dev., 7, 1519–1533, https://doi.org/10.5194/gmd-7-1519-2014, https://doi.org/10.5194/gmd-7-1519-2014, 2014
T. L. Smallman, M. Williams, and J. B. Moncrieff
Biogeosciences, 11, 735–747, https://doi.org/10.5194/bg-11-735-2014, https://doi.org/10.5194/bg-11-735-2014, 2014
Related subject area
Biogeochemistry: Modelling, Terrestrial
Development of the DO3SE-Crop model to assess ozone effects on crop phenology, biomass, and yield
Future methane fluxes of peatlands are controlled by management practices and fluctuations in hydrological conditions due to climatic variability
Understanding and simulating cropland and non-cropland burning in Europe using the BASE (Burnt Area Simulator for Europe) model
Representation of the terrestrial carbon cycle in CMIP6
Does dynamically modeled leaf area improve predictions of land surface water and carbon fluxes? Insights into dynamic vegetation modules
Observational benchmarks inform representation of soil organic carbon dynamics in land surface models
X-BASE: the first terrestrial carbon and water flux products from an extended data-driven scaling framework, FLUXCOM-X
A 2001–2022 global gross primary productivity dataset using an ensemble model based on the random forest method
Future projections of Siberian wildfire and aerosol emissions
Mechanisms of soil organic carbon and nitrogen stabilization in mineral-associated organic matter – insights from modeling in phase space
Optimizing the terrestrial ecosystem gross primary productivity using carbonyl sulfide (COS) within a two-leaf modeling framework
Modeling integrated soil fertility management for maize production in Kenya using a Bayesian calibration of the DayCent model
Estimates of critical loads and exceedances of acidity and nutrient nitrogen for mineral soils in Canada for 2014–2016 average annual sulphur and nitrogen atmospheric deposition
When and why microbial-explicit soil organic carbon models can be unstable
The impacts of modelling prescribed vs. dynamic land cover in a high-CO2 future scenario – greening of the Arctic and Amazonian dieback
Climate-based prediction of carbon fluxes from deadwood in Australia
Integration of tree hydraulic processes and functional impairment to capture the drought resilience of a semiarid pine forest
The effect of temperature on photosystem II efficiency across plant functional types and climate
Modeling microbial carbon fluxes and stocks in global soils from 1901 to 2016
Elevated atmospheric CO2 concentration and vegetation structural changes contributed to gross primary productivity increase more than climate and forest cover changes in subtropical forests of China
Non-steady-state stomatal conductance modeling and its implications: from leaf to ecosystem
Modelled forest ecosystem carbon–nitrogen dynamics with integrated mycorrhizal processes under elevated CO2
A chemical kinetics theory for interpreting the non-monotonic temperature dependence of enzymatic reactions
Using Free Air CO2 Enrichment data to constrain land surface model projections of the terrestrial carbon cycle
Multiscale assessment of North American terrestrial carbon balance
Simulating net ecosystem exchange under seasonal snow cover at an Arctic tundra site
Spatial biases reduce the ability of Earth system models to simulate soil heterotrophic respiration fluxes
Tropical dry forest response to nutrient fertilization: a model validation and sensitivity analysis
Connecting competitor, stress-tolerator and ruderal (CSR) theory and Lund Potsdam Jena managed Land 5 (LPJmL 5) to assess the role of environmental conditions, management and functional diversity for grassland ecosystem functions
A global fuel characteristic model and dataset for wildfire prediction
Can models adequately reflect how long-term nitrogen enrichment alters the forest soil carbon cycle?
Temporal variability of observed and simulated gross primary productivity, modulated by vegetation state and hydrometeorological drivers
Empirical upscaling of OzFlux eddy covariance for high-resolution monitoring of terrestrial carbon uptake in Australia
A modeling approach to investigate drivers, variability and uncertainties in O2 fluxes and O2 : CO2 exchange ratios in a temperate forest
Modeling coupled nitrification–denitrification in soil with an organic hotspot
A new method for estimating carbon dioxide emissions from drained peatland forest soils for the greenhouse gas inventory of Finland
Enabling a process-oriented hydro-biogeochemical model to simulate soil erosion and nutrient losses
Potassium limitation of forest productivity – Part 1: A mechanistic model simulating the effects of potassium availability on canopy carbon and water fluxes in tropical eucalypt stands
Potassium limitation of forest productivity – Part 2: CASTANEA-MAESPA-K shows a reduction in photosynthesis rather than a stoichiometric limitation of tissue formation
Global evaluation of terrestrial biogeochemistry in the Energy Exascale Earth System Model (E3SM) and the role of the phosphorus cycle in the historical terrestrial carbon balance
Assessing carbon storage capacity and saturation across six central US grasslands using data–model integration
Optimizing the carbonic anhydrase temperature response and stomatal conductance of carbonyl sulfide leaf uptake in the Simple Biosphere model (SiB4)
Exploring environmental and physiological drivers of the annual carbon budget of biocrusts from various climatic zones with a mechanistic data-driven model
Improved process representation of leaf phenology significantly shifts climate sensitivity of ecosystem carbon balance
Mapping of ESA's Climate Change Initiative land cover data to plant functional types for use in the CLASSIC land model
Exploring the impacts of unprecedented climate extremes on forest ecosystems: hypotheses to guide modeling and experimental studies
Effect of droughts and climate change on future soil weathering rates in Sweden
Information content in time series of litter decomposition studies and the transit time of litter in arid lands
Long-term changes of nitrogen leaching and the contributions of terrestrial nutrient sources to lake eutrophication dynamics on the Yangtze Plain of China
Towards an ensemble-based evaluation of land surface models in light of uncertain forcings and observations
Pritha Pande, Sam Bland, Nathan Booth, Jo Cook, Zhaozhong Feng, and Lisa Emberson
Biogeosciences, 22, 181–212, https://doi.org/10.5194/bg-22-181-2025, https://doi.org/10.5194/bg-22-181-2025, 2025
Short summary
Short summary
The DO3SE-Crop model extends the DO3SE to simulate ozone's impact on crops with modules for ozone uptake, damage, and crop growth from JULES-crop. It's versatile, suits China's varied agriculture, and improves yield predictions under ozone stress. It is essential for policy, water management, and climate response, and it integrates into Earth system models for a comprehensive understanding of agriculture's interaction with global systems.
Vilna Tyystjärvi, Tiina Markkanen, Leif Backman, Maarit Raivonen, Antti Leppänen, Xuefei Li, Paavo Ojanen, Kari Minkkinen, Roosa Hautala, Mikko Peltoniemi, Jani Anttila, Raija Laiho, Annalea Lohila, Raisa Mäkipää, and Tuula Aalto
Biogeosciences, 21, 5745–5771, https://doi.org/10.5194/bg-21-5745-2024, https://doi.org/10.5194/bg-21-5745-2024, 2024
Short summary
Short summary
Drainage of boreal peatlands strongly influences soil methane fluxes, with important implications for climatic impacts. Here we simulate methane fluxes in forestry-drained and restored peatlands during the 21st century. We found that restoration turned peatlands into a source of methane, but the magnitude varied regionally. In forests, changes in the water table level influenced methane fluxes, and in general, the sink was weaker under rotational forestry compared to continuous cover forestry.
Matthew Forrest, Jessica Hetzer, Maik Billing, Simon P. K. Bowring, Eric Kosczor, Luke Oberhagemann, Oliver Perkins, Dan Warren, Fátima Arrogante-Funes, Kirsten Thonicke, and Thomas Hickler
Biogeosciences, 21, 5539–5560, https://doi.org/10.5194/bg-21-5539-2024, https://doi.org/10.5194/bg-21-5539-2024, 2024
Short summary
Short summary
Climate change is causing an increase in extreme wildfires in Europe, but drivers of fire are not well understood, especially across different land cover types. We used statistical models with satellite data, climate data, and socioeconomic data to determine what affects burning in cropland and non-cropland areas of Europe. We found different drivers of burning in cropland burning vs. non-cropland to the point that some variables, e.g. population density, had the complete opposite effects.
Bettina K. Gier, Manuel Schlund, Pierre Friedlingstein, Chris D. Jones, Colin Jones, Sönke Zaehle, and Veronika Eyring
Biogeosciences, 21, 5321–5360, https://doi.org/10.5194/bg-21-5321-2024, https://doi.org/10.5194/bg-21-5321-2024, 2024
Short summary
Short summary
This study investigates present-day carbon cycle variables in CMIP5 and CMIP6 simulations. Overall, CMIP6 models perform better but also show many remaining biases. A significant improvement in the simulation of photosynthesis in models with a nitrogen cycle is found, with only small differences between emission- and concentration-based simulations. Thus, we recommend using emission-driven simulations in CMIP7 by default and including the nitrogen cycle in all future carbon cycle models.
Sven Armin Westermann, Anke Hildebrandt, Souhail Bousetta, and Stephan Thober
Biogeosciences, 21, 5277–5303, https://doi.org/10.5194/bg-21-5277-2024, https://doi.org/10.5194/bg-21-5277-2024, 2024
Short summary
Short summary
Plants at the land surface mediate between soil and the atmosphere regarding water and carbon transport. Since plant growth is a dynamic process, models need to consider these dynamics. Two models that predict water and carbon fluxes by considering plant temporal evolution were tested against observational data. Currently, dynamizing plants in these models did not enhance their representativeness, which is caused by a mismatch between implemented physical relations and observable connections.
Kamal Nyaupane, Umakant Mishra, Feng Tao, Kyongmin Yeo, William J. Riley, Forrest M. Hoffman, and Sagar Gautam
Biogeosciences, 21, 5173–5183, https://doi.org/10.5194/bg-21-5173-2024, https://doi.org/10.5194/bg-21-5173-2024, 2024
Short summary
Short summary
Representing soil organic carbon (SOC) dynamics in Earth system models (ESMs) is a key source of uncertainty in predicting carbon–climate feedbacks. Using machine learning, we develop and compare predictive relationships in observations (Obs) and ESMs. We find different relationships between environmental factors and SOC stocks in Obs and ESMs. SOC prediction in ESMs may be improved by representing the functional relationships of environmental controllers in a way consistent with observations.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo A. Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Mana Gharun, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
Biogeosciences, 21, 5079–5115, https://doi.org/10.5194/bg-21-5079-2024, https://doi.org/10.5194/bg-21-5079-2024, 2024
Short summary
Short summary
The movement of water, carbon, and energy from the Earth's surface to the atmosphere, or flux, is an important process to understand because it impacts our lives. Here, we outline a method called FLUXCOM-X to estimate global water and CO2 fluxes based on direct measurements from sites around the world. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Xin Chen, Tiexi Chen, Xiaodong Li, Yuanfang Chai, Shengjie Zhou, Renjie Guo, and Jie Dai
Biogeosciences, 21, 4285–4300, https://doi.org/10.5194/bg-21-4285-2024, https://doi.org/10.5194/bg-21-4285-2024, 2024
Short summary
Short summary
We provide an ensemble-model-based GPP dataset (ERF_GPP) that explains 85.1 % of the monthly variation in GPP across 170 sites, which is higher than other GPP estimate models. In addition, ERF_GPP improves the phenomenon of “high-value underestimation and low-value overestimation” in GPP estimation to some extent. Overall, ERF_GPP provides a more reliable estimate of global GPP and will facilitate further development of carbon cycle research.
Reza Kusuma Nurrohman, Tomomichi Kato, Hideki Ninomiya, Lea Végh, Nicolas Delbart, Tatsuya Miyauchi, Hisashi Sato, Tomohiro Shiraishi, and Ryuichi Hirata
Biogeosciences, 21, 4195–4227, https://doi.org/10.5194/bg-21-4195-2024, https://doi.org/10.5194/bg-21-4195-2024, 2024
Short summary
Short summary
SPITFIRE (SPread and InTensity of FIRE) was integrated into a spatially explicit individual-based dynamic global vegetation model to improve the accuracy of depicting Siberian forest fire frequency, intensity, and extent. Fires showed increased greenhouse gas and aerosol emissions in 2006–2100 for Representative Concentration Pathways. This study contributes to understanding fire dynamics, land ecosystem–climate interactions, and global material cycles under the threat of escalating fires.
Stefano Manzoni and M. Francesca Cotrufo
Biogeosciences, 21, 4077–4098, https://doi.org/10.5194/bg-21-4077-2024, https://doi.org/10.5194/bg-21-4077-2024, 2024
Short summary
Short summary
Organic carbon and nitrogen are stabilized in soils via microbial assimilation and stabilization of necromass (in vivo pathway) or via adsorption of the products of extracellular decomposition (ex vivo pathway). Here we use a diagnostic model to quantify which stabilization pathway is prevalent using data on residue-derived carbon and nitrogen incorporation in mineral-associated organic matter. We find that the in vivo pathway is dominant in fine-textured soils with low organic matter content.
Huajie Zhu, Xiuli Xing, Mousong Wu, Weimin Ju, and Fei Jiang
Biogeosciences, 21, 3735–3760, https://doi.org/10.5194/bg-21-3735-2024, https://doi.org/10.5194/bg-21-3735-2024, 2024
Short summary
Short summary
Ecosystem carbonyl sulfide (COS) fluxes were employed to optimize GPP estimation across ecosystems with the Biosphere-atmosphere Exchange Process Simulator (BEPS), which was developed for simulating the canopy COS uptake under its state-of-the-art two-leaf modeling framework. Our results showcased the efficacy of COS in improving model prediction and reducing prediction uncertainty of GPP and enhanced insights into the sensitivity, identifiability, and interactions of parameters related to COS.
Moritz Laub, Magdalena Necpalova, Marijn Van de Broek, Marc Corbeels, Samuel Mathu Ndungu, Monicah Wanjiku Mucheru-Muna, Daniel Mugendi, Rebecca Yegon, Wycliffe Waswa, Bernard Vanlauwe, and Johan Six
Biogeosciences, 21, 3691–3716, https://doi.org/10.5194/bg-21-3691-2024, https://doi.org/10.5194/bg-21-3691-2024, 2024
Short summary
Short summary
We used the DayCent model to assess the potential impact of integrated soil fertility management (ISFM) on maize production, soil fertility, and greenhouse gas emission in Kenya. After adjustments, DayCent represented measured mean yields and soil carbon stock changes well and N2O emissions acceptably. Our results showed that soil fertility losses could be reduced but not completely eliminated with ISFM and that, while N2O emissions increased with ISFM, emissions per kilogram yield decreased.
Hazel Cathcart, Julian Aherne, Michael D. Moran, Verica Savic-Jovcic, Paul A. Makar, and Amanda Cole
EGUsphere, https://doi.org/10.5194/egusphere-2024-2371, https://doi.org/10.5194/egusphere-2024-2371, 2024
Short summary
Short summary
Deposition from sulfur and nitrogen pollution can harm ecosystems, and recovery from this type of pollution can take decades or longer. To identify risk to Canadian soils, we created maps showing sensitivity to sulfur and nitrogen pollution. Results show that some ecosystems are at risk from acid and nutrient nitrogen deposition; 10 % of protected areas are receiving acid deposition beyond their damage threshold and 70 % may be receiving nitrogen deposition that could cause biodiversity loss.
Erik Schwarz, Samia Ghersheen, Salim Belyazid, and Stefano Manzoni
Biogeosciences, 21, 3441–3461, https://doi.org/10.5194/bg-21-3441-2024, https://doi.org/10.5194/bg-21-3441-2024, 2024
Short summary
Short summary
The occurrence of unstable equilibrium points (EPs) could impede the applicability of microbial-explicit soil organic carbon models. For archetypal model versions we identify when instability can occur and describe mathematical conditions to avoid such unstable EPs. We discuss implications for further model development, highlighting the important role of considering basic ecological principles to ensure biologically meaningful models.
Sian Kou-Giesbrecht, Vivek K. Arora, Christian Seiler, and Libo Wang
Biogeosciences, 21, 3339–3371, https://doi.org/10.5194/bg-21-3339-2024, https://doi.org/10.5194/bg-21-3339-2024, 2024
Short summary
Short summary
Terrestrial biosphere models can either prescribe the geographical distribution of biomes or simulate them dynamically, capturing climate-change-driven biome shifts. We isolate and examine the differences between these different land cover implementations. We find that the simulated terrestrial carbon sink at the end of the 21st century is twice as large in simulations with dynamic land cover than in simulations with prescribed land cover due to important range shifts in the Arctic and Amazon.
Elizabeth S. Duan, Luciana Chavez Rodriguez, Nicole Hemming-Schroeder, Baptiste Wijas, Habacuc Flores-Moreno, Alexander W. Cheesman, Lucas A. Cernusak, Michael J. Liddell, Paul Eggleton, Amy E. Zanne, and Steven D. Allison
Biogeosciences, 21, 3321–3338, https://doi.org/10.5194/bg-21-3321-2024, https://doi.org/10.5194/bg-21-3321-2024, 2024
Short summary
Short summary
Understanding the link between climate and carbon fluxes is crucial for predicting how climate change will impact carbon sinks. We estimated carbon dioxide (CO2) fluxes from deadwood in tropical Australia using wood moisture content and temperature. Our model predicted that the majority of deadwood carbon is released as CO2, except when termite activity is detected. Future models should also incorporate wood traits, like species and chemical composition, to better predict fluxes.
Daniel Nadal-Sala, Rüdiger Grote, David Kraus, Uri Hochberg, Tamir Klein, Yael Wagner, Fedor Tatarinov, Dan Yakir, and Nadine K. Ruehr
Biogeosciences, 21, 2973–2994, https://doi.org/10.5194/bg-21-2973-2024, https://doi.org/10.5194/bg-21-2973-2024, 2024
Short summary
Short summary
A hydraulic model approach is presented that can be added to any physiologically based ecosystem model. Simulated plant water potential triggers stomatal closure, photosynthesis decline, root–soil resistance increases, and sapwood and foliage senescence. The model has been evaluated at an extremely dry site stocked with Aleppo pine and was able to represent gas exchange, soil water content, and plant water potential. The model also responded realistically regarding leaf senescence.
Patrick Neri, Lianhong Gu, and Yang Song
Biogeosciences, 21, 2731–2758, https://doi.org/10.5194/bg-21-2731-2024, https://doi.org/10.5194/bg-21-2731-2024, 2024
Short summary
Short summary
A first-of-its-kind global-scale model of temperature resilience and tolerance of photosystem II maximum quantum yield informs how plants maintain their efficiency of converting light energy to chemical energy for photosynthesis under temperature changes. Our finding explores this variation across plant functional types and habitat climatology, highlighting diverse temperature response strategies and a method to improve global-scale photosynthesis modeling under climate change.
Liyuan He, Jorge L. Mazza Rodrigues, Melanie A. Mayes, Chun-Ta Lai, David A. Lipson, and Xiaofeng Xu
Biogeosciences, 21, 2313–2333, https://doi.org/10.5194/bg-21-2313-2024, https://doi.org/10.5194/bg-21-2313-2024, 2024
Short summary
Short summary
Soil microbes are the driving engine for biogeochemical cycles of carbon and nutrients. This study applies a microbial-explicit model to quantify bacteria and fungal biomass carbon in soils from 1901 to 2016. Results showed substantial increases in bacterial and fungal biomass carbon over the past century, jointly influenced by vegetation growth and soil temperature and moisture. This pioneering century-long estimation offers crucial insights into soil microbial roles in global carbon cycling.
Tao Chen, Félicien Meunier, Marc Peaucelle, Guoping Tang, Ye Yuan, and Hans Verbeeck
Biogeosciences, 21, 2253–2272, https://doi.org/10.5194/bg-21-2253-2024, https://doi.org/10.5194/bg-21-2253-2024, 2024
Short summary
Short summary
Chinese subtropical forest ecosystems are an extremely important component of global forest ecosystems and hence crucial for the global carbon cycle and regional climate change. However, there is still great uncertainty in the relationship between subtropical forest carbon sequestration and its drivers. We provide first quantitative estimates of the individual and interactive effects of different drivers on the gross primary productivity changes of various subtropical forest types in China.
Ke Liu, Yujie Wang, Troy S. Magney, and Christian Frankenberg
Biogeosciences, 21, 1501–1516, https://doi.org/10.5194/bg-21-1501-2024, https://doi.org/10.5194/bg-21-1501-2024, 2024
Short summary
Short summary
Stomata are pores on leaves that regulate gas exchange between plants and the atmosphere. Existing land models unrealistically assume stomata can jump between steady states when the environment changes. We implemented dynamic modeling to predict gradual stomatal responses at different scales. Results suggested that considering this effect on plant behavior patterns in diurnal cycles was important. Our framework also simplified simulations and can contribute to further efficiency improvements.
Melanie A. Thurner, Silvia Caldararu, Jan Engel, Anja Rammig, and Sönke Zaehle
Biogeosciences, 21, 1391–1410, https://doi.org/10.5194/bg-21-1391-2024, https://doi.org/10.5194/bg-21-1391-2024, 2024
Short summary
Short summary
Due to their crucial role in terrestrial ecosystems, we implemented mycorrhizal fungi into the QUINCY terrestrial biosphere model. Fungi interact with mineral and organic soil to support plant N uptake and, thus, plant growth. Our results suggest that the effect of mycorrhizal interactions on simulated ecosystem dynamics is minor under constant environmental conditions but necessary to reproduce and understand observed patterns under changing conditions, such as rising atmospheric CO2.
Jinyun Tang and William J. Riley
Biogeosciences, 21, 1061–1070, https://doi.org/10.5194/bg-21-1061-2024, https://doi.org/10.5194/bg-21-1061-2024, 2024
Short summary
Short summary
A chemical kinetics theory is proposed to explain the non-monotonic relationship between temperature and biochemical rates. It incorporates the observed thermally reversible enzyme denaturation that is ensured by the ceaseless thermal motion of molecules and ions in an enzyme solution and three well-established theories: (1) law of mass action, (2) diffusion-limited chemical reaction theory, and (3) transition state theory.
Nina Raoult, Louis-Axel Edouard-Rambaut, Nicolas Vuichard, Vladislav Bastrikov, Anne Sofie Lansø, Bertrand Guenet, and Philippe Peylin
Biogeosciences, 21, 1017–1036, https://doi.org/10.5194/bg-21-1017-2024, https://doi.org/10.5194/bg-21-1017-2024, 2024
Short summary
Short summary
Observations are used to reduce uncertainty in land surface models (LSMs) by optimising poorly constraining parameters. However, optimising against current conditions does not necessarily ensure that the parameters treated as invariant will be robust in a changing climate. Manipulation experiments offer us a unique chance to optimise our models under different (here atmospheric CO2) conditions. By using these data in optimisations, we gain confidence in the future projections of LSMs.
Kelsey T. Foster, Wu Sun, Yoichi P. Shiga, Jiafu Mao, and Anna M. Michalak
Biogeosciences, 21, 869–891, https://doi.org/10.5194/bg-21-869-2024, https://doi.org/10.5194/bg-21-869-2024, 2024
Short summary
Short summary
Assessing agreement between bottom-up and top-down methods across spatial scales can provide insights into the relationship between ensemble spread (difference across models) and model accuracy (difference between model estimates and reality). We find that ensemble spread is unlikely to be a good indicator of actual uncertainty in the North American carbon balance. However, models that are consistent with atmospheric constraints show stronger agreement between top-down and bottom-up estimates.
Victoria R. Dutch, Nick Rutter, Leanne Wake, Oliver Sonnentag, Gabriel Hould Gosselin, Melody Sandells, Chris Derksen, Branden Walker, Gesa Meyer, Richard Essery, Richard Kelly, Phillip Marsh, Julia Boike, and Matteo Detto
Biogeosciences, 21, 825–841, https://doi.org/10.5194/bg-21-825-2024, https://doi.org/10.5194/bg-21-825-2024, 2024
Short summary
Short summary
We undertake a sensitivity study of three different parameters on the simulation of net ecosystem exchange (NEE) during the snow-covered non-growing season at an Arctic tundra site. Simulations are compared to eddy covariance measurements, with near-zero NEE simulated despite observed CO2 release. We then consider how to parameterise the model better in Arctic tundra environments on both sub-seasonal timescales and cumulatively throughout the snow-covered non-growing season.
Bertrand Guenet, Jérémie Orliac, Lauric Cécillon, Olivier Torres, Laura Sereni, Philip A. Martin, Pierre Barré, and Laurent Bopp
Biogeosciences, 21, 657–669, https://doi.org/10.5194/bg-21-657-2024, https://doi.org/10.5194/bg-21-657-2024, 2024
Short summary
Short summary
Heterotrophic respiration fluxes are a major flux between surfaces and the atmosphere, but Earth system models do not yet represent them correctly. Here we benchmarked Earth system models against observation-based products, and we identified the important mechanisms that need to be improved in the next-generation Earth system models.
Shuyue Li, Bonnie Waring, Jennifer Powers, and David Medvigy
Biogeosciences, 21, 455–471, https://doi.org/10.5194/bg-21-455-2024, https://doi.org/10.5194/bg-21-455-2024, 2024
Short summary
Short summary
We used an ecosystem model to simulate primary production of a tropical forest subjected to 3 years of nutrient fertilization. Simulations parameterized such that relative allocation to fine roots increased with increasing soil phosphorus had leaf, wood, and fine root production consistent with observations. However, these simulations seemed to over-allocate to fine roots on multidecadal timescales, affecting aboveground biomass. Additional observations across timescales would benefit models.
Stephen Björn Wirth, Arne Poyda, Friedhelm Taube, Britta Tietjen, Christoph Müller, Kirsten Thonicke, Anja Linstädter, Kai Behn, Sibyll Schaphoff, Werner von Bloh, and Susanne Rolinski
Biogeosciences, 21, 381–410, https://doi.org/10.5194/bg-21-381-2024, https://doi.org/10.5194/bg-21-381-2024, 2024
Short summary
Short summary
In dynamic global vegetation models (DGVMs), the role of functional diversity in forage supply and soil organic carbon storage of grasslands is not explicitly taken into account. We introduced functional diversity into the Lund Potsdam Jena managed Land (LPJmL) DGVM using CSR theory. The new model reproduced well-known trade-offs between plant traits and can be used to quantify the role of functional diversity in climate change mitigation using different functional diversity scenarios.
Joe R. McNorton and Francesca Di Giuseppe
Biogeosciences, 21, 279–300, https://doi.org/10.5194/bg-21-279-2024, https://doi.org/10.5194/bg-21-279-2024, 2024
Short summary
Short summary
Wildfires have wide-ranging consequences for local communities, air quality and ecosystems. Vegetation amount and moisture state are key components to forecast wildfires. We developed a combined model and satellite framework to characterise vegetation, including the type of fuel, whether it is alive or dead, and its moisture content. The daily data is at high resolution globally (~9 km). Our characteristics correlate with active fire data and can inform fire danger and spread modelling efforts.
Brooke A. Eastman, William R. Wieder, Melannie D. Hartman, Edward R. Brzostek, and William T. Peterjohn
Biogeosciences, 21, 201–221, https://doi.org/10.5194/bg-21-201-2024, https://doi.org/10.5194/bg-21-201-2024, 2024
Short summary
Short summary
We compared soil model performance to data from a long-term nitrogen addition experiment in a forested ecosystem. We found that in order for soil carbon models to accurately predict future forest carbon sequestration, two key processes must respond dynamically to nitrogen availability: (1) plant allocation of carbon to wood versus roots and (2) rates of soil organic matter decomposition. Long-term experiments can help improve our predictions of the land carbon sink and its climate impact.
Jan De Pue, Sebastian Wieneke, Ana Bastos, José Miguel Barrios, Liyang Liu, Philippe Ciais, Alirio Arboleda, Rafiq Hamdi, Maral Maleki, Fabienne Maignan, Françoise Gellens-Meulenberghs, Ivan Janssens, and Manuela Balzarolo
Biogeosciences, 20, 4795–4818, https://doi.org/10.5194/bg-20-4795-2023, https://doi.org/10.5194/bg-20-4795-2023, 2023
Short summary
Short summary
The gross primary production (GPP) of the terrestrial biosphere is a key source of variability in the global carbon cycle. To estimate this flux, models can rely on remote sensing data (RS-driven), meteorological data (meteo-driven) or a combination of both (hybrid). An intercomparison of 11 models demonstrated that RS-driven models lack the sensitivity to short-term anomalies. Conversely, the simulation of soil moisture dynamics and stress response remains a challenge in meteo-driven models.
Chad A. Burton, Luigi J. Renzullo, Sami W. Rifai, and Albert I. J. M. Van Dijk
Biogeosciences, 20, 4109–4134, https://doi.org/10.5194/bg-20-4109-2023, https://doi.org/10.5194/bg-20-4109-2023, 2023
Short summary
Short summary
Australia's land-based ecosystems play a critical role in controlling the variability in the global land carbon sink. However, uncertainties in the methods used for quantifying carbon fluxes limit our understanding. We develop high-resolution estimates of Australia's land carbon fluxes using machine learning methods and find that Australia is, on average, a stronger carbon sink than previously thought and that the seasonal dynamics of the fluxes differ from those described by other methods.
Yuan Yan, Anne Klosterhalfen, Fernando Moyano, Matthias Cuntz, Andrew C. Manning, and Alexander Knohl
Biogeosciences, 20, 4087–4107, https://doi.org/10.5194/bg-20-4087-2023, https://doi.org/10.5194/bg-20-4087-2023, 2023
Short summary
Short summary
A better understanding of O2 fluxes, their exchange ratios with CO2 and their interrelations with environmental conditions would provide further insights into biogeochemical ecosystem processes. We, therefore, used the multilayer canopy model CANVEG to simulate and analyze the flux exchange for our forest study site for 2012–2016. Based on these simulations, we further successfully tested the application of various micrometeorological methods and the prospects of real O2 flux measurements.
Jie Zhang, Elisabeth Larsen Kolstad, Wenxin Zhang, Iris Vogeler, and Søren O. Petersen
Biogeosciences, 20, 3895–3917, https://doi.org/10.5194/bg-20-3895-2023, https://doi.org/10.5194/bg-20-3895-2023, 2023
Short summary
Short summary
Manure application to agricultural land often results in large and variable N2O emissions. We propose a model with a parsimonious structure to investigate N transformations around such N2O hotspots. The model allows for new detailed insights into the interactions between transport and microbial activities regarding N2O emissions in heterogeneous soil environments. It highlights the importance of solute diffusion to N2O emissions from such hotspots which are often ignored by process-based models.
Jukka Alm, Antti Wall, Jukka-Pekka Myllykangas, Paavo Ojanen, Juha Heikkinen, Helena M. Henttonen, Raija Laiho, Kari Minkkinen, Tarja Tuomainen, and Juha Mikola
Biogeosciences, 20, 3827–3855, https://doi.org/10.5194/bg-20-3827-2023, https://doi.org/10.5194/bg-20-3827-2023, 2023
Short summary
Short summary
In Finland peatlands cover one-third of land area. For half of those, with 4.3 Mha being drained for forestry, Finland reports sinks and sources of greenhouse gases in forest lands on organic soils following its UNFCCC commitment. We describe a new method for compiling soil CO2 balance that follows changes in tree volume, tree harvests and temperature. An increasing trend of emissions from 1.4 to 7.9 Mt CO2 was calculated for drained peatland forest soils in Finland for 1990–2021.
Siqi Li, Bo Zhu, Xunhua Zheng, Pengcheng Hu, Shenghui Han, Jihui Fan, Tao Wang, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, Wei Zhang, and Yong Li
Biogeosciences, 20, 3555–3572, https://doi.org/10.5194/bg-20-3555-2023, https://doi.org/10.5194/bg-20-3555-2023, 2023
Short summary
Short summary
Physical soil erosion and particulate carbon, nitrogen and phosphorus loss modules were incorporated into the process-oriented hydro-biogeochemical model CNMM-DNDC to realize the accurate simulation of water-induced erosion and subsequent particulate nutrient losses at high spatiotemporal resolution.
Ivan Cornut, Nicolas Delpierre, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, Otavio Campoe, Jose Luiz Stape, Vitoria Fernanda Santos, and Guerric le Maire
Biogeosciences, 20, 3093–3117, https://doi.org/10.5194/bg-20-3093-2023, https://doi.org/10.5194/bg-20-3093-2023, 2023
Short summary
Short summary
Potassium is an essential element for living organisms. Trees are dependent upon this element for certain functions that allow them to build their trunks using carbon dioxide. Using data from experiments in eucalypt plantations in Brazil and a simplified computer model of the plantations, we were able to investigate the effect that a lack of potassium can have on the production of wood. Understanding nutrient cycles is useful to understand the response of forests to environmental change.
Ivan Cornut, Guerric le Maire, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, and Nicolas Delpierre
Biogeosciences, 20, 3119–3135, https://doi.org/10.5194/bg-20-3119-2023, https://doi.org/10.5194/bg-20-3119-2023, 2023
Short summary
Short summary
After simulating the effects of low levels of potassium on the canopy of trees and the uptake of carbon dioxide from the atmosphere by leaves in Part 1, here we tried to simulate the way the trees use the carbon they have acquired and the interaction with the potassium cycle in the tree. We show that the effect of low potassium on the efficiency of the trees in acquiring carbon is enough to explain why they produce less wood when they are in soils with low levels of potassium.
Xiaojuan Yang, Peter Thornton, Daniel Ricciuto, Yilong Wang, and Forrest Hoffman
Biogeosciences, 20, 2813–2836, https://doi.org/10.5194/bg-20-2813-2023, https://doi.org/10.5194/bg-20-2813-2023, 2023
Short summary
Short summary
We evaluated the performance of a land surface model (ELMv1-CNP) that includes both nitrogen (N) and phosphorus (P) limitation on carbon cycle processes. We show that ELMv1-CNP produces realistic estimates of present-day carbon pools and fluxes. We show that global C sources and sinks are significantly affected by P limitation. Our study suggests that introduction of P limitation in land surface models is likely to have substantial consequences for projections of future carbon uptake.
Kevin R. Wilcox, Scott L. Collins, Alan K. Knapp, William Pockman, Zheng Shi, Melinda D. Smith, and Yiqi Luo
Biogeosciences, 20, 2707–2725, https://doi.org/10.5194/bg-20-2707-2023, https://doi.org/10.5194/bg-20-2707-2023, 2023
Short summary
Short summary
The capacity for carbon storage (C capacity) is an attribute that determines how ecosystems store carbon in the future. Here, we employ novel data–model integration techniques to identify the carbon capacity of six grassland sites spanning the US Great Plains. Hot and dry sites had low C capacity due to less plant growth and high turnover of soil C, so they may be a C source in the future. Alternately, cooler and wetter ecosystems had high C capacity, so these systems may be a future C sink.
Ara Cho, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Richard Wehr, and Maarten C. Krol
Biogeosciences, 20, 2573–2594, https://doi.org/10.5194/bg-20-2573-2023, https://doi.org/10.5194/bg-20-2573-2023, 2023
Short summary
Short summary
Carbonyl sulfide (COS) is a useful constraint for estimating photosynthesis. To simulate COS leaf flux better in the SiB4 model, we propose a novel temperature function for enzyme carbonic anhydrase (CA) activity and optimize conductances using observations. The optimal activity of CA occurs below 40 °C, and Ball–Woodrow–Berry parameters are slightly changed. These reduce/increase uptakes in the tropics/higher latitudes and contribute to resolving discrepancies in the COS global budget.
Yunyao Ma, Bettina Weber, Alexandra Kratz, José Raggio, Claudia Colesie, Maik Veste, Maaike Y. Bader, and Philipp Porada
Biogeosciences, 20, 2553–2572, https://doi.org/10.5194/bg-20-2553-2023, https://doi.org/10.5194/bg-20-2553-2023, 2023
Short summary
Short summary
We found that the modelled annual carbon balance of biocrusts is strongly affected by both the environment (mostly air temperature and CO2 concentration) and physiology, such as temperature response of respiration. However, the relative impacts of these drivers vary across regions with different climates. Uncertainty in driving factors may lead to unrealistic carbon balance estimates, particularly in temperate climates, and may be explained by seasonal variation of physiology due to acclimation.
Alexander J. Norton, A. Anthony Bloom, Nicholas C. Parazoo, Paul A. Levine, Shuang Ma, Renato K. Braghiere, and T. Luke Smallman
Biogeosciences, 20, 2455–2484, https://doi.org/10.5194/bg-20-2455-2023, https://doi.org/10.5194/bg-20-2455-2023, 2023
Short summary
Short summary
This study explores how the representation of leaf phenology affects our ability to predict changes to the carbon balance of land ecosystems. We calibrate a new leaf phenology model against a diverse range of observations at six forest sites, showing that it improves the predictive capability of the processes underlying the ecosystem carbon balance. We then show how changes in temperature and rainfall affect the ecosystem carbon balance with this new model.
Libo Wang, Vivek K. Arora, Paul Bartlett, Ed Chan, and Salvatore R. Curasi
Biogeosciences, 20, 2265–2282, https://doi.org/10.5194/bg-20-2265-2023, https://doi.org/10.5194/bg-20-2265-2023, 2023
Short summary
Short summary
Plant functional types (PFTs) are groups of plant species used to represent vegetation distribution in land surface models. There are large uncertainties associated with existing methods for mapping land cover datasets to PFTs. This study demonstrates how fine-resolution tree cover fraction and land cover datasets can be used to inform the PFT mapping process and reduce the uncertainties. The proposed largely objective method makes it easier to implement new land cover products in models.
Jennifer A. Holm, David M. Medvigy, Benjamin Smith, Jeffrey S. Dukes, Claus Beier, Mikhail Mishurov, Xiangtao Xu, Jeremy W. Lichstein, Craig D. Allen, Klaus S. Larsen, Yiqi Luo, Cari Ficken, William T. Pockman, William R. L. Anderegg, and Anja Rammig
Biogeosciences, 20, 2117–2142, https://doi.org/10.5194/bg-20-2117-2023, https://doi.org/10.5194/bg-20-2117-2023, 2023
Short summary
Short summary
Unprecedented climate extremes (UCEs) are expected to have dramatic impacts on ecosystems. We present a road map of how dynamic vegetation models can explore extreme drought and climate change and assess ecological processes to measure and reduce model uncertainties. The models predict strong nonlinear responses to UCEs. Due to different model representations, the models differ in magnitude and trajectory of forest loss. Therefore, we explore specific plant responses that reflect knowledge gaps.
Veronika Kronnäs, Klas Lucander, Giuliana Zanchi, Nadja Stadlinger, Salim Belyazid, and Cecilia Akselsson
Biogeosciences, 20, 1879–1899, https://doi.org/10.5194/bg-20-1879-2023, https://doi.org/10.5194/bg-20-1879-2023, 2023
Short summary
Short summary
In a future climate, extreme droughts might become more common. Climate change and droughts can have negative effects on soil weathering and plant health.
In this study, climate change effects on weathering were studied on sites in Sweden using the model ForSAFE, a climate change scenario and an extreme drought scenario. The modelling shows that weathering is higher during summer and increases with global warming but that weathering during drought summers can become as low as winter weathering.
Agustín Sarquis and Carlos A. Sierra
Biogeosciences, 20, 1759–1771, https://doi.org/10.5194/bg-20-1759-2023, https://doi.org/10.5194/bg-20-1759-2023, 2023
Short summary
Short summary
Although plant litter is chemically and physically heterogenous and undergoes multiple transformations, models that represent litter dynamics often ignore this complexity. We used a multi-model inference framework to include information content in litter decomposition datasets and studied the time it takes for litter to decompose as measured by the transit time. In arid lands, the median transit time of litter is about 3 years and has a negative correlation with mean annual temperature.
Qi Guan, Jing Tang, Lian Feng, Stefan Olin, and Guy Schurgers
Biogeosciences, 20, 1635–1648, https://doi.org/10.5194/bg-20-1635-2023, https://doi.org/10.5194/bg-20-1635-2023, 2023
Short summary
Short summary
Understanding terrestrial sources of nitrogen is vital to examine lake eutrophication changes. Combining process-based ecosystem modeling and satellite observations, we found that land-leached nitrogen in the Yangtze Plain significantly increased from 1979 to 2018, and terrestrial nutrient sources were positively correlated with eutrophication trends observed in most lakes, demonstrating the necessity of sustainable nitrogen management to control eutrophication.
Vivek K. Arora, Christian Seiler, Libo Wang, and Sian Kou-Giesbrecht
Biogeosciences, 20, 1313–1355, https://doi.org/10.5194/bg-20-1313-2023, https://doi.org/10.5194/bg-20-1313-2023, 2023
Short summary
Short summary
The behaviour of natural systems is now very often represented through mathematical models. These models represent our understanding of how nature works. Of course, nature does not care about our understanding. Since our understanding is not perfect, evaluating models is challenging, and there are uncertainties. This paper illustrates this uncertainty for land models and argues that evaluating models in light of the uncertainty in various components provides useful information.
Cited articles
Akaike, H.: New look at statistical-model identification, IEEE T. Automat. Contr., 19, 716–723, 1974.
Baccini, A., Goetz,S. J., Walker, W. S., Laporte, N. T., Sun, M., Sulla-Menashe, D.,Hackler, J., Beck, P. S. A., Dubayah, R., Friedl, M. A., Samanta, S., and Houghton, R. A.: Estimated carbon dioxide emissions from tropical deforestation improved by carbon-density maps, Nature Clim. Change, 2, 182–185, 2012.
Baker, T. R., Phillips, O. L., Malhi, Y., Almeida, S., Arroyo,L., Di Fiore, A., Erwin, T., Higuchi, N., Killeen, T. J., Laurance, S. G. , Laurance, W. F., Lewis, S. L., Monteagudo, A., Neill, D. A., Núñez Vargas, P., Pitman, N. C. A. , Silva, J. N. M., and Vásquez Martínez, R.: Increasing biomass in amazonian forest plots, P. R. Soc. London, 359, 353–365, 2004.
Baldocchi, D., Falge, E. , Gu, L., Olson, R., Hollinger, D., Running, S., Anthoni, P., Bernhofer, C., Davis, K., Evans, R., Fuentes, J., Goldstein, A., Katul, G., Law, B., Lee, X., Malhi, Y., Meyers, T., Munger, W., Oechel, W., Paw, K. T., Pilegaard, K., Schmid, H. P., Valentini, R., Verma, S., Vesala, T., Wilson, K., and Wofsy, S. Fluxnet: A new tool to study the temporal and spatial variability of ecosystem-scale carbon dioxide, water vapor, and energy flux densities, B. Am. Meteorol. Soc., 82, 2415–2434, 2001.
Bellamy, P. H., Loveland, P. J., Bradley, R. I., Lark, R. M., and Kirk, G. J.: Carbon losses from all soils across england and wales 1978–2003, Nature, 437, 245–248, 2005.
Beven, K. and Freer, J.: Equifinality, data assimilation, and uncertainty estimation in mechanistic modelling of complex environmental systems using the glue methodology, J. Hydrol., 249, 11–29, 2001.
Caldararu, S., Palmer, P. I., and Purves, D. W.: Inferring Amazon leaf demography from satellite observations of leaf area index, Biogeosciences, 9, 1389–1404, https://doi.org/10.5194/bg-9-1389-2012, 2012.
Carvalhais, N., Reichstein, M., Ciais, P., Collatz, G. J., Mahecha, M. D., Montagnani, L., Papale, D., Rambal, S., and Seixas, J.: Identification of vegetation and soil carbon pools out of equilibrium in a process model via eddy covariance and biometric constraints, Glob. Change. Biol., 16, 2813–2829, 2010.
Desai, A. R., Bolstad, P. V., Cook, B. D., Davis, K. J., and Carey, E. V.: Comparing net ecosystem exchange of carbon dioxide between an old-growth and mature forest in the upper midwest, usa, Agr. Forest. Meteorol., 128, 33–55, 2005.
Feng, L., Palmer, P. I., Yang, Y., Yantosca, R. M., Kawa, S. R., Paris, J.-D., Matsueda, H., and Machida, T.: Evaluating a 3-D transport model of atmospheric CO2 using ground-based, aircraft, and space-borne data, Atmos. Chem. Phys., 11, 2789–2803, https://doi.org/10.5194/acp-11-2789-2011, 2011.
Fox, A., Williams, M., Richardson, A. D., Cameron, D., Gove, J. H., Quaife, T., Ricciuto, D., Re- ichstein, M., Tomelleri, E., Trudinger, C. M., and van Wijk, M. T.: The reflex project: comparing different algorithms and implementations for the inversion of a terrestrial ecosystem model against eddy covariance data, Agr. Forest. Meteorol., 149, 1597–1615, 2009.
Friend, A. D., Lucht, W., Rademacher, T. T., Keribin, R., Betts, R., Cadule, P., Ciais, P., Clark, D. B., Dankers, R., Falloon, P. D., Ito, A., Kahana, R., Kleidon, A., Lomas, M. R., Nishina, K., Ostberg, S., Pavlick, R., Peylin, P., Schaphoff, S., Vuichard, N., Warszawski, L., Wiltshire, A., and Woodward, F. I.: Carbon residence time dominates uncertainty in terrestrial vegetation responses to future climate and atmospheric CO2, P. Natl. Acad. Sci., 111, 3280–3285, 2013.
Gaudinski, J. B., Trumbore, S. E., Davidson, E. A., and Zheng, S.: Soil carbon cycling in a temperate forest: radiocarbon-based estimates of residence times, sequestration rates and partitioning of fluxes, Biogeochemistry, 51, 33–69, 2000.
Gelman, A. and Rubin, D. B.: Inference from iterative simulation using multiple sequences, Stat. Sci., 7, 457–472, 1992.
Hiederer, R. and M. Köchy: Global soil organic carbon estimates and the harmonized world soil database, EUR, 79, 25225, https://doi.org/10.2788/13267, 2011.
Hill, T. C., Ryan, E., and Williams, M.: The use of CO2 flux time series for parameter and carbon stock estimation in carbon cycle research, Glob. Change Biol., 18, 179–193, 2012.
Hollinger, D., Goltz, S., Davidson, E., Lee, J., Tu, K., and Valentine, H.: Seasonal patterns and environmental control of carbon dioxide and water vapour exchange in an ecotonal boreal forest, Glob. Change Biol., 5, 891–902, 1999.
Keenan, T. F., Davidson, E. A., Munger, J. W., and Richardson, A. D.: Rate my data: quantifying the value of ecological data for the development of models of the terrestrial carbon cycle, Ecol. Appl., 23, 273–286, 2013.
Le Quéré, C., Andres, R. J., Boden, T., Conway, T., Houghton, R. A., House, J. I., Marland, G., Peters, G. P., van der Werf, G., Ahlström, A., Andrew, R. M., Bopp, L., Canadell, J. G., Ciais, P., Doney, S. C., Enright, C., Friedlingstein, P., Huntingford, C., Jain, A. K., Jourdain, C., Kato, E., Keeling, R. F., Klein Goldewijk, K., Levis, S., Levy, P., Lomas, M., Poulter, B., Raupach, M. R., Schwinger, J., Sitch, S., Stocker, B. D., Viovy, N., Zaehle, S., and Zeng, N.: The global carbon budget 1959–2011, Earth Syst. Sci. Data, 5, 165–185, https://doi.org/10.5194/essd-5-165-2013, 2013.
Luo, Y. and Weng, E.: Dynamic disequilibrium of the terrestrial carbon cycle under global change, Trends Ecol. Evol., 26, 96–104, 2011.
Luo, Y., Ogle, K., Tucker, C., Fei, S., Gao, C., LaDeau, S., Clark, J. S., and Schimel, D. S.: Ecological forecasting and data assimilation in a data-rich era, Ecol. Appl., 21, 1429–1442, 2011.
Luyssaert, S., Schulze, E.-D., Börner, A., Knohl, A., Hessenmöller, D., Law, B. E., Ciais, P., and Grace, J.: Old-growth forests as global carbon sinks, Nature, 455, 213–215, 2008.
Mokany, K., Raison, R., and Prokushkin, A. S.: Critical analysis of root: shoot ratios in terrestrial biomes, Glob. Change Biol., 12, 84–96, 2006.
Norby, R. J., Hanson, P. J., O'Neill, E. G., Tschaplinski, T. J., Weltzin, J. F., Hansen, R. A., Cheng, W., Wullschleger, S. D., Gunderson, C. A., Edwards, N. T., and Johnson, D. W.: Net primary productivity of a CO2-enriched deciduous forest and the implications for carbon storage, Ecol. Appl., 12, 1261–1266, 2002.
Quaife, T., Lewis, P., De Kauwe, M., Williams, M., Law, B. E., Disney, M., and Bowyer, P.: Assimilating canopy reflectance data into an ecosystem model with an ensemble kalman filter, Remote Sens. Environ., 112, 1347–1364, 2008.
Richardson, A. D., Williams, M., Hollinger, D. Y., Moore, D. J., Dail, D. B., Davidson, E. A., Scott, N. A., Evans, R. S., Hughes, H., Lee, J. T., Rodrigues, C., and Savage, K.: Estimating parameters of a forest ecosystem c model with measurements of stocks and fluxes as joint constraints, Oecologia, 164, 25–40, 2010.
Saatchi, S. S., Harris, N. L., Brown, S., Lefsky, M., Mitchard, E. T., Salas, W., Zutta, B. R., Buermann, W., Lewis, S. L., Hagen, S., Petrova, S., White, L., Silman, M., and Morel, A.: Benchmark map of forest carbon stocks in tropical regions across three continents, P. Natl. Acad. Sci., 108, 9899–9904, 2011.
Schmid, H. P., Grimmond, C., S. B., Cropley, F., Offerle, B., and Su, H.-B.: Measurements of CO2 and energy fluxes over a mixed hardwood forest in the mid-western united states, Agr. Forest. Meteorol., 103, 357–374, 2000.
Schwalm, C. R., Williams, C. A., Schaefer, K., Anderson, R., Arain, M. A., Baker, I., Barr, A., Black, T. A., Chen, G., Chen, J. M., Ciais, P., Davis, K. J., Desai, A., Dietze, M., Dragoni, D., Fischer, M. L., Flanagan, L. B., Grant, R., Gu, L. Hollinger, D. Izaurralde, R. C., Kucharik, C. Lafleur, P., Law, B. E., Li, L., Li, Z. Liu, S., Lokupitiya, E., Luo, Y., Ma, S., Margolis, H., Matamala, R., McCaughey, H., Monson, R. K., Oechel, W. C., Peng, C. Poulter, B. Price, D. T. Riciutto, D. M., Riley, W., Sahoo, A. K., Sprintsin, M., Sun, J., Tian, H., Tonitto, C., Verbeeck, H., and Verma, S. B.: A model-data intercomparison of CO2 exchange across north america: Results from the north american carbon program site synthesis, J. Geophys. Res.-Biogeo., 115, G00H05, https://doi.org/10.1029/2009JG001229, 2010.
Sea, W. B., Choler, P., Beringer, J., Weinmann, R. A., Hutley, L. B., and Leuning, R.: Documenting improvement in leaf area index estimates from modis using hemispherical photos for australian savannas, Agr. Forest. Meteorol., 151, 1453–1461, 2011.
Serbin, S. P., Ahl, D. E., and Gower, S. T.: Spatial and temporal validation of the modis lai and fpar products across a boreal forest wildfire chronosequence, Remote Sens. Environ., 133, 71–84, 2013.
Simard, M., Pinto, N., Fisher, J. B., and Baccini, A.: Mapping forest canopy height globally with spaceborne lidar, J. Geophys. Res.-Biogeo., 116, G04021, https://doi.org/10.1029/2011JG001708, 2011.
Sitch, S., Huntingford, C., Gedney, N., Levy, P., Lomas, M., Piao, S., Betts, R., Ciais, P., Cox, P., Friedlingstein, P., Jones, C. D., Prentice, I. C., and Woodward, F. I.: Evaluation of the terrestrial carbon cycle, future plant geography and climate-carbon cycle feedbacks using five dynamic global vegetation models (dgvms), Glob. Change Biol., 14, 2015–2039, 2008.
Sloan, V. L., Fletcher, B. J., Press, M. C., Williams, M., and Phoenix, G. K.: Leaf and fine root carbon stocks and turnover are coupled across arctic ecosystems, Glob. Change Biol., 19, 3668–3676, 2013.
Smith, M. J., Purves, D. W., Vanderwel, M. C., Lyutsarev, V., and Emmott, S.: The climate dependence of the terrestrial carbon cycle, including parameter and structural uncertainties, Biogeosciences, 10, 583–606, https://doi.org/10.5194/bg-10-583-2013, 2013.
Thurner, M., Beer, C., Santoro, M., Carvalhais, N., Wutzler, T., Schepaschenko, D., Shvi-denko, A., Kompter, E., Ahrens, B., Levick, S. R., and Schmullius, C.: Carbon stock and density of northern boreal and temperate forests, Global Ecol. Biogeogr., 23, 297–310, 2013.
Todd-Brown, K. E. O., Randerson, J. T., Post, W. M., Hoffman, F. M., Tarnocai, C., Schuur, E. A. G., and Allison, S. D.: Causes of variation in soil carbon simulations from CMIP5 Earth system models and comparison with observations, Biogeosciences, 10, 1717–1736, https://doi.org/10.5194/bg-10-1717-2013, 2013.
Trumbore, S.: Carbon respired by terrestrial ecosystems–recent progress and challenges, Glob. Change Biol., 12, 141–153, 2006.
Williams, M. and Rastetter, E. B.: Vegetation characteristics and primary productivity along an arctic transect: implications for scaling-up, J. Ecol., 87, 885–898, 1999.
Williams, M., Rastetter, E. B., Fernandes, D. N., Goulden, M. L., Shaver, G. R., and Johnson, L. C.: Predicting gross primary productivity in terrestrial ecosystems, Ecol. Appl., 7, 882–894, 1997.
Williams, M., Schwarz, P. A., Law, B. E., Irvine, J., and Kurpius, M. R.: An improved analysis of forest carbon dynamics using data assimilation, Glob. Change Biol., 11, 89–105, 2005.
Williams, M., Richardson, A. D., Reichstein, M., Stoy, P. C., Peylin, P., Verbeeck, H., Carvalhais, N., Jung, M., Hollinger, D. Y., Kattge, J., Leuning, R., Luo, Y., Tomelleri, E., Trudinger, C. M., and Wang, Y.-P.: Improving land surface models with FLUXNET data, Biogeosciences, 6, 1341–1359, https://doi.org/10.5194/bg-6-1341-2009, 2009.
Wright, I. J., Reich, P. B., Westoby, M., Ackerly, D. D., Baruch, Z., Bongers, F., Cavender- Bares, J., Chapin, T., Cornelissen, J. H., Diemer, M., Flexas, J., Garnier, E., Groom, P. K., Gulias, J., Hikosaka, K., Lamont, B. B., Lee,T., Lee, W., Lusk, C., Midgley, J. J., Navas, M.-L., Niinemets, Ü., Oleksyn, J., Osada, N., Poorter, H., Poot, P., Prior, L., Pyankov, V. I., Roumet, C., Thomas, S. C., Tjoelker, M. G., Veneklaas, E. J., and Villar, R.: The worldwide leaf economics spectrum, Nature, 428, 821–827, 2004.
Xu, T., White, L., Hui, D., and Luo, Y.: Probabilistic inversion of a terrestrial ecosystem model: Analysis of uncertainty in parameter estimation and model prediction, Global Biogeochem. Cy., 20, GB2007, https://doi.org/10.1029/2005GB002468, 2006.
Ziehn, T., Scholze, M., and Knorr, W.: On the capability of monte carlo and adjoint inversion techniques to derive posterior parameter uncertainties in terrestrial ecosystem models, Global Biogeochem. Cy., 26, GB3025, https://doi.org/10.1029/2011GB004185, 2012.
Altmetrics
Final-revised paper
Preprint