Articles | Volume 20, issue 13
https://doi.org/10.5194/bg-20-2553-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-20-2553-2023
© Author(s) 2023. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
04 Jul 2023
Research article |
| 04 Jul 2023
| 04 Jul 2023
Exploring environmental and physiological drivers of the annual carbon budget of biocrusts from various climatic zones with a mechanistic data-driven model
Institute of Plant Science and Microbiology, Universität Hamburg, 22609 Hamburg, Germany
Bettina Weber
Institute of Plant Sciences, Department of Biology, University of Graz, 8010 Graz, Austria
Department of Multiphase Chemistry, Max Planck Institute for Chemistry, 55128 Mainz, Germany
Alexandra Kratz
Department of Multiphase Chemistry, Max Planck Institute for Chemistry, 55128 Mainz, Germany
José Raggio
Departamento de Farmacología, Farmacognosia y Botánica, Complutense University of Madrid, 28040 Madrid, Spain
Claudia Colesie
School of Geosciences, University of Edinburgh, EH9 3FF Edinburgh, United Kingdom
Maik Veste
Institute of Environmental Sciences, Brandenburg University of Technology Cottbus-Senftenberg, 03046 Cottbus, Germany
CEBra – Centre for Energy Technology Brandenburg e.V., 03042 Cottbus, Germany
Maaike Y. Bader
Faculty of Geography, University of Marburg, 35032 Marburg, Germany
Philipp Porada
Institute of Plant Science and Microbiology, Universität Hamburg, 22609 Hamburg, Germany
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Youssef Saadaoui, Christian Beer, Peter Mueller, Friederike Neiske, Joscha N. Becker, Annette Eschenbach, and Philipp Porada
EGUsphere, https://doi.org/10.5194/egusphere-2024-1756, https://doi.org/10.5194/egusphere-2024-1756, 2024
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Estuarine marshes are vital for capturing carbon and benefiting the climate. Our research explored how plant-microbe interactions affect carbon cycling, focusing on traits like root oxygen loss. Using a model, we found that accounting for these trait variations significantly changes carbon balance estimates. This suggests that including plant diversity in ecosystem models improves predictions about carbon dynamics in estuarine marshes, highlighting their importance in climate regulation.
Eliane Gomes Alves, Raoni Aquino Santana, Cléo Quaresma Dias-Júnior, Santiago Botía, Tyeen Taylor, Ana Maria Yáñez-Serrano, Jürgen Kesselmeier, Efstratios Bourtsoukidis, Jonathan Williams, Pedro Ivo Lembo Silveira de Assis, Giordane Martins, Rodrigo de Souza, Sérgio Duvoisin Júnior, Alex Guenther, Dasa Gu, Anywhere Tsokankunku, Matthias Sörgel, Bruce Nelson, Davieliton Pinto, Shujiro Komiya, Diogo Martins Rosa, Bettina Weber, Cybelli Barbosa, Michelle Robin, Kenneth J. Feeley, Alvaro Duque, Viviana Londoño Lemos, Maria Paula Contreras, Alvaro Idarraga, Norberto López, Chad Husby, Brett Jestrow, and Iván Mauricio Cely Toro
Atmos. Chem. Phys., 23, 8149–8168, https://doi.org/10.5194/acp-23-8149-2023, https://doi.org/10.5194/acp-23-8149-2023, 2023
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Isoprene is emitted mainly by plants and can influence atmospheric chemistry and air quality. But, there are uncertainties in model emission estimates and follow-up atmospheric processes. In our study, with long-term observational datasets of isoprene and biological and environmental factors from central Amazonia, we show that isoprene emission estimates could be improved when biological processes were mechanistically incorporated into the model.
Charlotte M. Beall, Thomas C. J. Hill, Paul J. DeMott, Tobias Köneman, Michael Pikridas, Frank Drewnick, Hartwig Harder, Christopher Pöhlker, Jos Lelieveld, Bettina Weber, Minas Iakovides, Roman Prokeš, Jean Sciare, Meinrat O. Andreae, M. Dale Stokes, and Kimberly A. Prather
Atmos. Chem. Phys., 22, 12607–12627, https://doi.org/10.5194/acp-22-12607-2022, https://doi.org/10.5194/acp-22-12607-2022, 2022
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Ice-nucleating particles (INPs) are rare aerosols that can trigger ice formation in clouds and affect climate-relevant cloud properties such as phase, reflectivity and lifetime. Dust is the dominant INP source, yet few measurements have been reported near major dust sources. We report INP observations within hundreds of kilometers of the biggest dust source regions globally: the Sahara and the Arabian Peninsula. Results show that at temperatures > −15 °C, INPs are dominated by organics.
Suman Halder, Susanne K. M. Arens, Kai Jensen, Tais W. Dahl, and Philipp Porada
Geosci. Model Dev., 15, 2325–2343, https://doi.org/10.5194/gmd-15-2325-2022, https://doi.org/10.5194/gmd-15-2325-2022, 2022
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A dynamic vegetation model, designed to estimate potential impacts of early vascular vegetation, namely, lycopsids, on the biogeochemical cycle at a local scale. Lycopsid Model (LYCOm) estimates the productivity and physiological properties of lycopsids across a broad climatic range along with natural selection, which is then utilized to adjudge their weathering potential. It lays the foundation for estimation of their impacts during their long evolutionary history starting from the Ordovician.
Kai Tang, Beatriz Sánchez-Parra, Petya Yordanova, Jörn Wehking, Anna T. Backes, Daniel A. Pickersgill, Stefanie Maier, Jean Sciare, Ulrich Pöschl, Bettina Weber, and Janine Fröhlich-Nowoisky
Biogeosciences, 19, 71–91, https://doi.org/10.5194/bg-19-71-2022, https://doi.org/10.5194/bg-19-71-2022, 2022
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Metagenomic sequencing and freezing experiments of aerosol samples collected on Cyprus revealed rain-related short-term changes of bioaerosol and ice nuclei composition. Filtration experiments showed a rain-related enhancement of biological ice nuclei > 5 µm and < 0.1 µm. The observed effects of rainfall on the composition of atmospheric bioaerosols and ice nuclei may influence the hydrological cycle as well as the health effects of air particulate matter (pathogens, allergens).
Maria Prass, Meinrat O. Andreae, Alessandro C. de Araùjo, Paulo Artaxo, Florian Ditas, Wolfgang Elbert, Jan-David Förster, Marco Aurélio Franco, Isabella Hrabe de Angelis, Jürgen Kesselmeier, Thomas Klimach, Leslie Ann Kremper, Eckhard Thines, David Walter, Jens Weber, Bettina Weber, Bernhard M. Fuchs, Ulrich Pöschl, and Christopher Pöhlker
Biogeosciences, 18, 4873–4887, https://doi.org/10.5194/bg-18-4873-2021, https://doi.org/10.5194/bg-18-4873-2021, 2021
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Bioaerosols in the atmosphere over the Amazon rain forest were analyzed by molecular biological staining and microscopy. Eukaryotic, bacterial, and archaeal aerosols were quantified in time series and altitude profiles which exhibited clear differences in number concentrations and vertical distributions. Our results provide insights into the sources and dispersion of different Amazonian bioaerosol types as a basis for a better understanding of biosphere–atmosphere interactions.
Nina Löbs, David Walter, Cybelli G. G. Barbosa, Sebastian Brill, Rodrigo P. Alves, Gabriela R. Cerqueira, Marta de Oliveira Sá, Alessandro C. de Araújo, Leonardo R. de Oliveira, Florian Ditas, Daniel Moran-Zuloaga, Ana Paula Pires Florentino, Stefan Wolff, Ricardo H. M. Godoi, Jürgen Kesselmeier, Sylvia Mota de Oliveira, Meinrat O. Andreae, Christopher Pöhlker, and Bettina Weber
Biogeosciences, 17, 5399–5416, https://doi.org/10.5194/bg-17-5399-2020, https://doi.org/10.5194/bg-17-5399-2020, 2020
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Cryptogamic organisms, such as bryophytes, lichens, and algae, cover major parts of vegetation in the Amazonian rain forest, but their relevance in biosphere–atmosphere exchange, climate processes, and nutrient cycling is largely unknown.
Over the duration of 2 years we measured their water content, temperature, and light conditions to get better insights into their physiological activity patterns and thus their potential impact on local, regional, and even global biogeochemical processes.
Félix Pellerin, Philipp Porada, and Inga Hense
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2020-55, https://doi.org/10.5194/esd-2020-55, 2020
Revised manuscript not accepted
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While several biological processes are similar among terrestrial and marine ecosystems, their representation in Earth System Models may differ. By comparing the terrestrial and marine modules of 17 Earth System Models, we found multiple evidences of unjustified differences in processes representation. These inconsistencies may lead to wrong predictions about the role of biosphere in the climate system and skew our perception of the relative influence of each ecosystem on climate.
Nina Löbs, Cybelli G. G. Barbosa, Sebastian Brill, David Walter, Florian Ditas, Marta de Oliveira Sá, Alessandro C. de Araújo, Leonardo R. de Oliveira, Ricardo H. M. Godoi, Stefan Wolff, Meike Piepenbring, Jürgen Kesselmeier, Paulo Artaxo, Meinrat O. Andreae, Ulrich Pöschl, Christopher Pöhlker, and Bettina Weber
Atmos. Meas. Tech., 13, 153–164, https://doi.org/10.5194/amt-13-153-2020, https://doi.org/10.5194/amt-13-153-2020, 2020
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Bioaerosols are considered to play a relevant role in atmospheric processes, but their sources, properties, and spatiotemporal distribution in the atmosphere are not yet well characterized. Measurement data on the release of fungal spores under natural conditions are also sparse. Here, we present an experimental approach to analyze and quantify the spore release from fungi and other spore-producing organisms under natural and laboratory conditions.
Christopher Pöhlker, David Walter, Hauke Paulsen, Tobias Könemann, Emilio Rodríguez-Caballero, Daniel Moran-Zuloaga, Joel Brito, Samara Carbone, Céline Degrendele, Viviane R. Després, Florian Ditas, Bruna A. Holanda, Johannes W. Kaiser, Gerhard Lammel, Jošt V. Lavrič, Jing Ming, Daniel Pickersgill, Mira L. Pöhlker, Maria Praß, Nina Löbs, Jorge Saturno, Matthias Sörgel, Qiaoqiao Wang, Bettina Weber, Stefan Wolff, Paulo Artaxo, Ulrich Pöschl, and Meinrat O. Andreae
Atmos. Chem. Phys., 19, 8425–8470, https://doi.org/10.5194/acp-19-8425-2019, https://doi.org/10.5194/acp-19-8425-2019, 2019
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The Amazon Tall Tower Observatory (ATTO) has been established to monitor the rain forest's biosphere–atmosphere exchange, which experiences the combined pressures from human-made deforestation and progressing climate change. This work is meant to be a reference study, which characterizes various geospatial properties of the ATTO footprint region and shows how the human-made transformation of Amazonia may impact future atmospheric observations at ATTO.
Philipp Porada, Alexandra Tamm, Jose Raggio, Yafang Cheng, Axel Kleidon, Ulrich Pöschl, and Bettina Weber
Biogeosciences, 16, 2003–2031, https://doi.org/10.5194/bg-16-2003-2019, https://doi.org/10.5194/bg-16-2003-2019, 2019
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The trace gases NO and HONO are crucial for atmospheric chemistry. It has been suggested that biological soil crusts in drylands contribute substantially to global NO and HONO emissions, based on empirical upscaling of laboratory and field observations. Here we apply an alternative, process-based modeling approach to predict these emissions. We find that biological soil crusts emit globally significant amounts of NO and HONO, which also vary depending on the type of biological soil crust.
Dorothea S. Macholdt, Jan-David Förster, Maren Müller, Bettina Weber, Michael Kappl, A. L. David Kilcoyne, Markus Weigand, Jan Leitner, Klaus Peter Jochum, Christopher Pöhlker, and Meinrat O. Andreae
Geosci. Instrum. Method. Data Syst., 8, 97–111, https://doi.org/10.5194/gi-8-97-2019, https://doi.org/10.5194/gi-8-97-2019, 2019
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Focused ion beam (FIB) slicing is a widely used technique to prepare ultrathin slices for the microanalysis of geological and environmental samples. During our investigations of the manganese oxidation states in rock varnish slices, we found an FIB-related reduction of manganese(IV) to manganese(II) at the samples’ surfaces. This study characterizes the observed reduction artifacts and emphasizes that caution is needed in the analysis of transition metal oxidation states upon FIB preparation.
Stefano Manzoni, Petr Čapek, Philipp Porada, Martin Thurner, Mattias Winterdahl, Christian Beer, Volker Brüchert, Jan Frouz, Anke M. Herrmann, Björn D. Lindahl, Steve W. Lyon, Hana Šantrůčková, Giulia Vico, and Danielle Way
Biogeosciences, 15, 5929–5949, https://doi.org/10.5194/bg-15-5929-2018, https://doi.org/10.5194/bg-15-5929-2018, 2018
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Carbon fixed by plants and phytoplankton through photosynthesis is ultimately stored in soils and sediments or released to the atmosphere during decomposition of dead biomass. Carbon-use efficiency is a useful metric to quantify the fate of carbon – higher efficiency means higher storage and lower release to the atmosphere. Here we summarize many definitions of carbon-use efficiency and study how this metric changes from organisms to ecosystems and from terrestrial to aquatic environments.
Daniel Moran-Zuloaga, Florian Ditas, David Walter, Jorge Saturno, Joel Brito, Samara Carbone, Xuguang Chi, Isabella Hrabě de Angelis, Holger Baars, Ricardo H. M. Godoi, Birgit Heese, Bruna A. Holanda, Jošt V. Lavrič, Scot T. Martin, Jing Ming, Mira L. Pöhlker, Nina Ruckteschler, Hang Su, Yaqiang Wang, Qiaoqiao Wang, Zhibin Wang, Bettina Weber, Stefan Wolff, Paulo Artaxo, Ulrich Pöschl, Meinrat O. Andreae, and Christopher Pöhlker
Atmos. Chem. Phys., 18, 10055–10088, https://doi.org/10.5194/acp-18-10055-2018, https://doi.org/10.5194/acp-18-10055-2018, 2018
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This study presents multiple years of aerosol coarse mode observations at the remote ATTO site in the Amazon Basin. The results are discussed in light of the frequent and episodic long-range transport of Saharan dust plumes in the early wet season as well as the persistent background bioaerosol cycling in the rain forest ecosystem. This work provides a solid basis for future studies on the dynamic coarse mode aerosol cycling and its biogeochemical relevance in the Amazon.
Jennifer Caesar, Alexandra Tamm, Nina Ruckteschler, Anna Lena Leifke, and Bettina Weber
Biogeosciences, 15, 1415–1424, https://doi.org/10.5194/bg-15-1415-2018, https://doi.org/10.5194/bg-15-1415-2018, 2018
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In our study we analyzed the efficiency of different chlorophyll extraction solvents and investigated the effect of different preparatory steps to determine the optimal extraction method for biological soil crusts. Based on our results we confirm a DMSO-based chlorophyll extraction method without grinding pretreatment and suggest to insert an intermediate shaking step for complete chlorophyll extraction.
Christian Beer, Philipp Porada, Altug Ekici, and Matthias Brakebusch
The Cryosphere, 12, 741–757, https://doi.org/10.5194/tc-12-741-2018, https://doi.org/10.5194/tc-12-741-2018, 2018
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Idealized model experiments demonstrate that, in addition to a gradual climate change, changing daily to weekly variability of meteorological variables and extreme events will also have an impact on mean annual ground temperature in high-latitude permafrost areas. In fact, results of the land surface model experiments show that the projected increase of variability of meteorological variables leads to cooler permafrost soil in contrast to an otherwise soil warming in response to climate change.
Hannah Meusel, Alexandra Tamm, Uwe Kuhn, Dianming Wu, Anna Lena Leifke, Sabine Fiedler, Nina Ruckteschler, Petya Yordanova, Naama Lang-Yona, Mira Pöhlker, Jos Lelieveld, Thorsten Hoffmann, Ulrich Pöschl, Hang Su, Bettina Weber, and Yafang Cheng
Atmos. Chem. Phys., 18, 799–813, https://doi.org/10.5194/acp-18-799-2018, https://doi.org/10.5194/acp-18-799-2018, 2018
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The photolysis of nitrous acid (HONO) forms the OH radical. However, not all sources are known. Recent studies showed that HONO can be emitted from soil but they did not evaluate the importance to the HONO budget. In this work HONO emissions from 43 soil and biological soil crust samples from Cyprus were measured in a dynamic chamber and extrapolated to the real atmosphere. A large fraction of the local missing source (published earlier; Meusel et al., 2016) could be assigned to soil emissions.
Steffen Seitz, Martin Nebel, Philipp Goebes, Kathrin Käppeler, Karsten Schmidt, Xuezheng Shi, Zhengshan Song, Carla L. Webber, Bettina Weber, and Thomas Scholten
Biogeosciences, 14, 5775–5788, https://doi.org/10.5194/bg-14-5775-2017, https://doi.org/10.5194/bg-14-5775-2017, 2017
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This study investigated biological soil crusts (biocrusts, e.g. cyanobacteria and mosses) within an early-stage mesic subtropical forest in China, where they were particularly abundant. Biocrust covers significantly decreased soil erosion and were more effective in erosion reduction than stone cover. Hence, they play an important role in mitigating soil erosion under forest and are of particular interest for erosion control in forest plantations.
Sarah E. Chadburn, Gerhard Krinner, Philipp Porada, Annett Bartsch, Christian Beer, Luca Belelli Marchesini, Julia Boike, Altug Ekici, Bo Elberling, Thomas Friborg, Gustaf Hugelius, Margareta Johansson, Peter Kuhry, Lars Kutzbach, Moritz Langer, Magnus Lund, Frans-Jan W. Parmentier, Shushi Peng, Ko Van Huissteden, Tao Wang, Sebastian Westermann, Dan Zhu, and Eleanor J. Burke
Biogeosciences, 14, 5143–5169, https://doi.org/10.5194/bg-14-5143-2017, https://doi.org/10.5194/bg-14-5143-2017, 2017
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Earth system models (ESMs) are our main tools for understanding future climate. The Arctic is important for the future carbon cycle, particularly due to the large carbon stocks in permafrost. We evaluated the performance of the land component of three major ESMs at Arctic tundra sites, focusing on the fluxes and stocks of carbon.
We show that the next steps for model improvement are to better represent vegetation dynamics, to include mosses and to improve below-ground carbon cycle processes.
Philipp Porada, Ulrich Pöschl, Axel Kleidon, Christian Beer, and Bettina Weber
Biogeosciences, 14, 1593–1602, https://doi.org/10.5194/bg-14-1593-2017, https://doi.org/10.5194/bg-14-1593-2017, 2017
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Lichens and bryophytes have been shown to release nitrous oxide, which is a strong greenhouse gas and atmospheric ozone-depleting agent. Here we apply a process-based computer model of lichens and bryophytes at the global scale, to estimate growth and respiration of the organisms. By relating respiration to nitrous oxide release, we simulate global nitrous oxide emissions of 0.27 (0.19–0.35) Tg yr−1. Moreover, we quantify different sources of uncertainty in nitrous oxide emission rates.
Hannah Meusel, Uwe Kuhn, Andreas Reiffs, Chinmay Mallik, Hartwig Harder, Monica Martinez, Jan Schuladen, Birger Bohn, Uwe Parchatka, John N. Crowley, Horst Fischer, Laura Tomsche, Anna Novelli, Thorsten Hoffmann, Ruud H. H. Janssen, Oscar Hartogensis, Michael Pikridas, Mihalis Vrekoussis, Efstratios Bourtsoukidis, Bettina Weber, Jos Lelieveld, Jonathan Williams, Ulrich Pöschl, Yafang Cheng, and Hang Su
Atmos. Chem. Phys., 16, 14475–14493, https://doi.org/10.5194/acp-16-14475-2016, https://doi.org/10.5194/acp-16-14475-2016, 2016
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There are many studies which show discrepancies between modeled and measured nitrous acid (HONO, precursor of OH radical) in the troposphere but with no satisfactory explanation. Ideal conditions to study the unknown sources of HONO were found on Cyprus, a remote Mediterranean island. Budget analysis of trace gas measurements indicates a common source of NO and HONO, which is not related to anthropogenic activity and is most likely derived from biologic activity in soils and subsequent emission.
Philipp Porada, Altug Ekici, and Christian Beer
The Cryosphere, 10, 2291–2315, https://doi.org/10.5194/tc-10-2291-2016, https://doi.org/10.5194/tc-10-2291-2016, 2016
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Bryophyte and lichen cover on the forest floor at high latitudes insulates the ground and thus decreases soil temperature. This can protect permafrost soil, stabilising it against global warming. To quantify the insulating effect, we integrate a novel, process-based model of bryophyte and lichen growth into the global land surface model JSBACH. We find an average cooling effect of the bryophyte and lichen cover of 2.7 K, which implies a significant impact on soil temperature at high latitudes.
Christian Beer, Philipp Porada, Altug Ekici, and Matthias Brakebusch
The Cryosphere Discuss., https://doi.org/10.5194/tc-2016-210, https://doi.org/10.5194/tc-2016-210, 2016
Preprint withdrawn
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Models suggest thawing permafrost in future due to climate change. In addition to warming, day-to-day variability of air temperature and precipitation is projected to increase. In an idealized theoretical model experiment we show that such changing short-term variability will reduce soil warming as a consequence of air warming by up to 1 K due to effects on snow and moss insulating layers. This shows the need of a mechanistic representation of such layers in Earth system models.
M. O. Andreae, O. C. Acevedo, A. Araùjo, P. Artaxo, C. G. G. Barbosa, H. M. J. Barbosa, J. Brito, S. Carbone, X. Chi, B. B. L. Cintra, N. F. da Silva, N. L. Dias, C. Q. Dias-Júnior, F. Ditas, R. Ditz, A. F. L. Godoi, R. H. M. Godoi, M. Heimann, T. Hoffmann, J. Kesselmeier, T. Könemann, M. L. Krüger, J. V. Lavric, A. O. Manzi, A. P. Lopes, D. L. Martins, E. F. Mikhailov, D. Moran-Zuloaga, B. W. Nelson, A. C. Nölscher, D. Santos Nogueira, M. T. F. Piedade, C. Pöhlker, U. Pöschl, C. A. Quesada, L. V. Rizzo, C.-U. Ro, N. Ruckteschler, L. D. A. Sá, M. de Oliveira Sá, C. B. Sales, R. M. N. dos Santos, J. Saturno, J. Schöngart, M. Sörgel, C. M. de Souza, R. A. F. de Souza, H. Su, N. Targhetta, J. Tóta, I. Trebs, S. Trumbore, A. van Eijck, D. Walter, Z. Wang, B. Weber, J. Williams, J. Winderlich, F. Wittmann, S. Wolff, and A. M. Yáñez-Serrano
Atmos. Chem. Phys., 15, 10723–10776, https://doi.org/10.5194/acp-15-10723-2015, https://doi.org/10.5194/acp-15-10723-2015, 2015
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This paper describes the Amazon Tall Tower Observatory (ATTO), a new atmosphere-biosphere observatory located in the remote Amazon Basin. It presents results from ecosystem ecology, meteorology, trace gas, and aerosol measurements collected at the ATTO site during the first 3 years of operation.
C. Buendía, S. Arens, T. Hickler, S. I. Higgins, P. Porada, and A. Kleidon
Biogeosciences, 11, 3661–3683, https://doi.org/10.5194/bg-11-3661-2014, https://doi.org/10.5194/bg-11-3661-2014, 2014
A. Kleidon, M. Renner, and P. Porada
Hydrol. Earth Syst. Sci., 18, 2201–2218, https://doi.org/10.5194/hess-18-2201-2014, https://doi.org/10.5194/hess-18-2201-2014, 2014
P. Porada, B. Weber, W. Elbert, U. Pöschl, and A. Kleidon
Biogeosciences, 10, 6989–7033, https://doi.org/10.5194/bg-10-6989-2013, https://doi.org/10.5194/bg-10-6989-2013, 2013
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Reza Kusuma Nurrohman, Tomomichi Kato, Hideki Ninomiya, Lea Végh, Nicolas Delbart, Tatsuya Miyauchi, Hisashi Sato, Tomohiro Shiraishi, and Ryuichi Hirata
Biogeosciences, 21, 4195–4227, https://doi.org/10.5194/bg-21-4195-2024, https://doi.org/10.5194/bg-21-4195-2024, 2024
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SPITFIRE (SPread and InTensity of FIRE) was integrated into a spatially explicit individual-based dynamic global vegetation model to improve the accuracy of depicting Siberian forest fire frequency, intensity, and extent. Fires showed increased greenhouse gas and aerosol emissions in 2006–2100 for Representative Concentration Pathways. This study contributes to understanding fire dynamics, land ecosystem–climate interactions, and global material cycles under the threat of escalating fires.
Stefano Manzoni and M. Francesca Cotrufo
Biogeosciences, 21, 4077–4098, https://doi.org/10.5194/bg-21-4077-2024, https://doi.org/10.5194/bg-21-4077-2024, 2024
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Organic carbon and nitrogen are stabilized in soils via microbial assimilation and stabilization of necromass (in vivo pathway) or via adsorption of the products of extracellular decomposition (ex vivo pathway). Here we use a diagnostic model to quantify which stabilization pathway is prevalent using data on residue-derived carbon and nitrogen incorporation in mineral-associated organic matter. We find that the in vivo pathway is dominant in fine-textured soils with low organic matter content.
Huajie Zhu, Xiuli Xing, Mousong Wu, Weimin Ju, and Fei Jiang
Biogeosciences, 21, 3735–3760, https://doi.org/10.5194/bg-21-3735-2024, https://doi.org/10.5194/bg-21-3735-2024, 2024
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Ecosystem carbonyl sulfide (COS) fluxes were employed to optimize GPP estimation across ecosystems with the Biosphere-atmosphere Exchange Process Simulator (BEPS), which was developed for simulating the canopy COS uptake under its state-of-the-art two-leaf modeling framework. Our results showcased the efficacy of COS in improving model prediction and reducing prediction uncertainty of GPP and enhanced insights into the sensitivity, identifiability, and interactions of parameters related to COS.
Moritz Laub, Magdalena Necpalova, Marijn Van de Broek, Marc Corbeels, Samuel Mathu Ndungu, Monicah Wanjiku Mucheru-Muna, Daniel Mugendi, Rebecca Yegon, Wycliffe Waswa, Bernard Vanlauwe, and Johan Six
Biogeosciences, 21, 3691–3716, https://doi.org/10.5194/bg-21-3691-2024, https://doi.org/10.5194/bg-21-3691-2024, 2024
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We used the DayCent model to assess the potential impact of integrated soil fertility management (ISFM) on maize production, soil fertility, and greenhouse gas emission in Kenya. After adjustments, DayCent represented measured mean yields and soil carbon stock changes well and N2O emissions acceptably. Our results showed that soil fertility losses could be reduced but not completely eliminated with ISFM and that, while N2O emissions increased with ISFM, emissions per kilogram yield decreased.
Erik Schwarz, Samia Ghersheen, Salim Belyazid, and Stefano Manzoni
Biogeosciences, 21, 3441–3461, https://doi.org/10.5194/bg-21-3441-2024, https://doi.org/10.5194/bg-21-3441-2024, 2024
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The occurrence of unstable equilibrium points (EPs) could impede the applicability of microbial-explicit soil organic carbon models. For archetypal model versions we identify when instability can occur and describe mathematical conditions to avoid such unstable EPs. We discuss implications for further model development, highlighting the important role of considering basic ecological principles to ensure biologically meaningful models.
Sian Kou-Giesbrecht, Vivek K. Arora, Christian Seiler, and Libo Wang
Biogeosciences, 21, 3339–3371, https://doi.org/10.5194/bg-21-3339-2024, https://doi.org/10.5194/bg-21-3339-2024, 2024
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Terrestrial biosphere models can either prescribe the geographical distribution of biomes or simulate them dynamically, capturing climate-change-driven biome shifts. We isolate and examine the differences between these different land cover implementations. We find that the simulated terrestrial carbon sink at the end of the 21st century is twice as large in simulations with dynamic land cover than in simulations with prescribed land cover due to important range shifts in the Arctic and Amazon.
Elizabeth S. Duan, Luciana Chavez Rodriguez, Nicole Hemming-Schroeder, Baptiste Wijas, Habacuc Flores-Moreno, Alexander W. Cheesman, Lucas A. Cernusak, Michael J. Liddell, Paul Eggleton, Amy E. Zanne, and Steven D. Allison
Biogeosciences, 21, 3321–3338, https://doi.org/10.5194/bg-21-3321-2024, https://doi.org/10.5194/bg-21-3321-2024, 2024
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Understanding the link between climate and carbon fluxes is crucial for predicting how climate change will impact carbon sinks. We estimated carbon dioxide (CO2) fluxes from deadwood in tropical Australia using wood moisture content and temperature. Our model predicted that the majority of deadwood carbon is released as CO2, except when termite activity is detected. Future models should also incorporate wood traits, like species and chemical composition, to better predict fluxes.
Daniel Nadal-Sala, Rüdiger Grote, David Kraus, Uri Hochberg, Tamir Klein, Yael Wagner, Fedor Tatarinov, Dan Yakir, and Nadine K. Ruehr
Biogeosciences, 21, 2973–2994, https://doi.org/10.5194/bg-21-2973-2024, https://doi.org/10.5194/bg-21-2973-2024, 2024
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A hydraulic model approach is presented that can be added to any physiologically based ecosystem model. Simulated plant water potential triggers stomatal closure, photosynthesis decline, root–soil resistance increases, and sapwood and foliage senescence. The model has been evaluated at an extremely dry site stocked with Aleppo pine and was able to represent gas exchange, soil water content, and plant water potential. The model also responded realistically regarding leaf senescence.
Patrick Neri, Lianhong Gu, and Yang Song
Biogeosciences, 21, 2731–2758, https://doi.org/10.5194/bg-21-2731-2024, https://doi.org/10.5194/bg-21-2731-2024, 2024
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A first-of-its-kind global-scale model of temperature resilience and tolerance of photosystem II maximum quantum yield informs how plants maintain their efficiency of converting light energy to chemical energy for photosynthesis under temperature changes. Our finding explores this variation across plant functional types and habitat climatology, highlighting diverse temperature response strategies and a method to improve global-scale photosynthesis modeling under climate change.
Liyuan He, Jorge L. Mazza Rodrigues, Melanie A. Mayes, Chun-Ta Lai, David A. Lipson, and Xiaofeng Xu
Biogeosciences, 21, 2313–2333, https://doi.org/10.5194/bg-21-2313-2024, https://doi.org/10.5194/bg-21-2313-2024, 2024
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Soil microbes are the driving engine for biogeochemical cycles of carbon and nutrients. This study applies a microbial-explicit model to quantify bacteria and fungal biomass carbon in soils from 1901 to 2016. Results showed substantial increases in bacterial and fungal biomass carbon over the past century, jointly influenced by vegetation growth and soil temperature and moisture. This pioneering century-long estimation offers crucial insights into soil microbial roles in global carbon cycling.
Tao Chen, Félicien Meunier, Marc Peaucelle, Guoping Tang, Ye Yuan, and Hans Verbeeck
Biogeosciences, 21, 2253–2272, https://doi.org/10.5194/bg-21-2253-2024, https://doi.org/10.5194/bg-21-2253-2024, 2024
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Chinese subtropical forest ecosystems are an extremely important component of global forest ecosystems and hence crucial for the global carbon cycle and regional climate change. However, there is still great uncertainty in the relationship between subtropical forest carbon sequestration and its drivers. We provide first quantitative estimates of the individual and interactive effects of different drivers on the gross primary productivity changes of various subtropical forest types in China.
Ke Liu, Yujie Wang, Troy S. Magney, and Christian Frankenberg
Biogeosciences, 21, 1501–1516, https://doi.org/10.5194/bg-21-1501-2024, https://doi.org/10.5194/bg-21-1501-2024, 2024
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Stomata are pores on leaves that regulate gas exchange between plants and the atmosphere. Existing land models unrealistically assume stomata can jump between steady states when the environment changes. We implemented dynamic modeling to predict gradual stomatal responses at different scales. Results suggested that considering this effect on plant behavior patterns in diurnal cycles was important. Our framework also simplified simulations and can contribute to further efficiency improvements.
Melanie A. Thurner, Silvia Caldararu, Jan Engel, Anja Rammig, and Sönke Zaehle
Biogeosciences, 21, 1391–1410, https://doi.org/10.5194/bg-21-1391-2024, https://doi.org/10.5194/bg-21-1391-2024, 2024
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Due to their crucial role in terrestrial ecosystems, we implemented mycorrhizal fungi into the QUINCY terrestrial biosphere model. Fungi interact with mineral and organic soil to support plant N uptake and, thus, plant growth. Our results suggest that the effect of mycorrhizal interactions on simulated ecosystem dynamics is minor under constant environmental conditions but necessary to reproduce and understand observed patterns under changing conditions, such as rising atmospheric CO2.
Jinyun Tang and William J. Riley
Biogeosciences, 21, 1061–1070, https://doi.org/10.5194/bg-21-1061-2024, https://doi.org/10.5194/bg-21-1061-2024, 2024
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A chemical kinetics theory is proposed to explain the non-monotonic relationship between temperature and biochemical rates. It incorporates the observed thermally reversible enzyme denaturation that is ensured by the ceaseless thermal motion of molecules and ions in an enzyme solution and three well-established theories: (1) law of mass action, (2) diffusion-limited chemical reaction theory, and (3) transition state theory.
Nina Raoult, Louis-Axel Edouard-Rambaut, Nicolas Vuichard, Vladislav Bastrikov, Anne Sofie Lansø, Bertrand Guenet, and Philippe Peylin
Biogeosciences, 21, 1017–1036, https://doi.org/10.5194/bg-21-1017-2024, https://doi.org/10.5194/bg-21-1017-2024, 2024
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Observations are used to reduce uncertainty in land surface models (LSMs) by optimising poorly constraining parameters. However, optimising against current conditions does not necessarily ensure that the parameters treated as invariant will be robust in a changing climate. Manipulation experiments offer us a unique chance to optimise our models under different (here atmospheric CO2) conditions. By using these data in optimisations, we gain confidence in the future projections of LSMs.
Kelsey T. Foster, Wu Sun, Yoichi P. Shiga, Jiafu Mao, and Anna M. Michalak
Biogeosciences, 21, 869–891, https://doi.org/10.5194/bg-21-869-2024, https://doi.org/10.5194/bg-21-869-2024, 2024
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Assessing agreement between bottom-up and top-down methods across spatial scales can provide insights into the relationship between ensemble spread (difference across models) and model accuracy (difference between model estimates and reality). We find that ensemble spread is unlikely to be a good indicator of actual uncertainty in the North American carbon balance. However, models that are consistent with atmospheric constraints show stronger agreement between top-down and bottom-up estimates.
Victoria R. Dutch, Nick Rutter, Leanne Wake, Oliver Sonnentag, Gabriel Hould Gosselin, Melody Sandells, Chris Derksen, Branden Walker, Gesa Meyer, Richard Essery, Richard Kelly, Phillip Marsh, Julia Boike, and Matteo Detto
Biogeosciences, 21, 825–841, https://doi.org/10.5194/bg-21-825-2024, https://doi.org/10.5194/bg-21-825-2024, 2024
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We undertake a sensitivity study of three different parameters on the simulation of net ecosystem exchange (NEE) during the snow-covered non-growing season at an Arctic tundra site. Simulations are compared to eddy covariance measurements, with near-zero NEE simulated despite observed CO2 release. We then consider how to parameterise the model better in Arctic tundra environments on both sub-seasonal timescales and cumulatively throughout the snow-covered non-growing season.
Xin Chen, Tiexi Chen, Xiaodong Li, Yuanfang Chai, Shengjie Zhou, Renjie Guo, and Jie Dai
EGUsphere, https://doi.org/10.5194/egusphere-2024-114, https://doi.org/10.5194/egusphere-2024-114, 2024
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We provides an ensemble model-based GPP dataset (ERF_GPP) that explains 83.7 % of the monthly variation in GPP across 171 sites, higher than other single remote sensing model. In addition, ERF_GPP improves the phenomenon of “high value underestimation and low value overestimation” in GPP estimation to some extent. Overall, ERF_GPP provides a more reliable estimate of global GPP and will facilitate further development of carbon cycle research.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billdesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Gharun Mana, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
EGUsphere, https://doi.org/10.5194/egusphere-2024-165, https://doi.org/10.5194/egusphere-2024-165, 2024
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The movement of water, carbon, and energy from the earth surface to the atmosphere, or flux, is an important process to understand that impacts all of our lives. Here we outline a method to estimate global water and CO2 fluxes based on direct measurements from site around the world called FLUXCOM-X. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Bertrand Guenet, Jérémie Orliac, Lauric Cécillon, Olivier Torres, Laura Sereni, Philip A. Martin, Pierre Barré, and Laurent Bopp
Biogeosciences, 21, 657–669, https://doi.org/10.5194/bg-21-657-2024, https://doi.org/10.5194/bg-21-657-2024, 2024
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Heterotrophic respiration fluxes are a major flux between surfaces and the atmosphere, but Earth system models do not yet represent them correctly. Here we benchmarked Earth system models against observation-based products, and we identified the important mechanisms that need to be improved in the next-generation Earth system models.
Shuyue Li, Bonnie Waring, Jennifer Powers, and David Medvigy
Biogeosciences, 21, 455–471, https://doi.org/10.5194/bg-21-455-2024, https://doi.org/10.5194/bg-21-455-2024, 2024
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We used an ecosystem model to simulate primary production of a tropical forest subjected to 3 years of nutrient fertilization. Simulations parameterized such that relative allocation to fine roots increased with increasing soil phosphorus had leaf, wood, and fine root production consistent with observations. However, these simulations seemed to over-allocate to fine roots on multidecadal timescales, affecting aboveground biomass. Additional observations across timescales would benefit models.
Stephen Björn Wirth, Arne Poyda, Friedhelm Taube, Britta Tietjen, Christoph Müller, Kirsten Thonicke, Anja Linstädter, Kai Behn, Sibyll Schaphoff, Werner von Bloh, and Susanne Rolinski
Biogeosciences, 21, 381–410, https://doi.org/10.5194/bg-21-381-2024, https://doi.org/10.5194/bg-21-381-2024, 2024
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In dynamic global vegetation models (DGVMs), the role of functional diversity in forage supply and soil organic carbon storage of grasslands is not explicitly taken into account. We introduced functional diversity into the Lund Potsdam Jena managed Land (LPJmL) DGVM using CSR theory. The new model reproduced well-known trade-offs between plant traits and can be used to quantify the role of functional diversity in climate change mitigation using different functional diversity scenarios.
Joe R. McNorton and Francesca Di Giuseppe
Biogeosciences, 21, 279–300, https://doi.org/10.5194/bg-21-279-2024, https://doi.org/10.5194/bg-21-279-2024, 2024
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Wildfires have wide-ranging consequences for local communities, air quality and ecosystems. Vegetation amount and moisture state are key components to forecast wildfires. We developed a combined model and satellite framework to characterise vegetation, including the type of fuel, whether it is alive or dead, and its moisture content. The daily data is at high resolution globally (~9 km). Our characteristics correlate with active fire data and can inform fire danger and spread modelling efforts.
Brooke A. Eastman, William R. Wieder, Melannie D. Hartman, Edward R. Brzostek, and William T. Peterjohn
Biogeosciences, 21, 201–221, https://doi.org/10.5194/bg-21-201-2024, https://doi.org/10.5194/bg-21-201-2024, 2024
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We compared soil model performance to data from a long-term nitrogen addition experiment in a forested ecosystem. We found that in order for soil carbon models to accurately predict future forest carbon sequestration, two key processes must respond dynamically to nitrogen availability: (1) plant allocation of carbon to wood versus roots and (2) rates of soil organic matter decomposition. Long-term experiments can help improve our predictions of the land carbon sink and its climate impact.
Jan De Pue, Sebastian Wieneke, Ana Bastos, José Miguel Barrios, Liyang Liu, Philippe Ciais, Alirio Arboleda, Rafiq Hamdi, Maral Maleki, Fabienne Maignan, Françoise Gellens-Meulenberghs, Ivan Janssens, and Manuela Balzarolo
Biogeosciences, 20, 4795–4818, https://doi.org/10.5194/bg-20-4795-2023, https://doi.org/10.5194/bg-20-4795-2023, 2023
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The gross primary production (GPP) of the terrestrial biosphere is a key source of variability in the global carbon cycle. To estimate this flux, models can rely on remote sensing data (RS-driven), meteorological data (meteo-driven) or a combination of both (hybrid). An intercomparison of 11 models demonstrated that RS-driven models lack the sensitivity to short-term anomalies. Conversely, the simulation of soil moisture dynamics and stress response remains a challenge in meteo-driven models.
Sven Armin Westermann, Anke Hildebrandt, Souhail Bousetta, and Stephan Thober
EGUsphere, https://doi.org/10.5194/egusphere-2023-2101, https://doi.org/10.5194/egusphere-2023-2101, 2023
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Plants at the land surface mediates between soil and atmosphere regarding water and carbon transport. Since plant growth is a dynamic process, models need to care for this dynamics. Here, two models which predict water and carbon fluxes by considering plant temporal evolution were tested against observational data. Currently, dynamizing plants in these models did not enhance their representativeness which is caused by a mismatch between implemented physical relations and observable connections.
Chad A. Burton, Luigi J. Renzullo, Sami W. Rifai, and Albert I. J. M. Van Dijk
Biogeosciences, 20, 4109–4134, https://doi.org/10.5194/bg-20-4109-2023, https://doi.org/10.5194/bg-20-4109-2023, 2023
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Australia's land-based ecosystems play a critical role in controlling the variability in the global land carbon sink. However, uncertainties in the methods used for quantifying carbon fluxes limit our understanding. We develop high-resolution estimates of Australia's land carbon fluxes using machine learning methods and find that Australia is, on average, a stronger carbon sink than previously thought and that the seasonal dynamics of the fluxes differ from those described by other methods.
Yuan Yan, Anne Klosterhalfen, Fernando Moyano, Matthias Cuntz, Andrew C. Manning, and Alexander Knohl
Biogeosciences, 20, 4087–4107, https://doi.org/10.5194/bg-20-4087-2023, https://doi.org/10.5194/bg-20-4087-2023, 2023
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A better understanding of O2 fluxes, their exchange ratios with CO2 and their interrelations with environmental conditions would provide further insights into biogeochemical ecosystem processes. We, therefore, used the multilayer canopy model CANVEG to simulate and analyze the flux exchange for our forest study site for 2012–2016. Based on these simulations, we further successfully tested the application of various micrometeorological methods and the prospects of real O2 flux measurements.
Jie Zhang, Elisabeth Larsen Kolstad, Wenxin Zhang, Iris Vogeler, and Søren O. Petersen
Biogeosciences, 20, 3895–3917, https://doi.org/10.5194/bg-20-3895-2023, https://doi.org/10.5194/bg-20-3895-2023, 2023
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Manure application to agricultural land often results in large and variable N2O emissions. We propose a model with a parsimonious structure to investigate N transformations around such N2O hotspots. The model allows for new detailed insights into the interactions between transport and microbial activities regarding N2O emissions in heterogeneous soil environments. It highlights the importance of solute diffusion to N2O emissions from such hotspots which are often ignored by process-based models.
Jukka Alm, Antti Wall, Jukka-Pekka Myllykangas, Paavo Ojanen, Juha Heikkinen, Helena M. Henttonen, Raija Laiho, Kari Minkkinen, Tarja Tuomainen, and Juha Mikola
Biogeosciences, 20, 3827–3855, https://doi.org/10.5194/bg-20-3827-2023, https://doi.org/10.5194/bg-20-3827-2023, 2023
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In Finland peatlands cover one-third of land area. For half of those, with 4.3 Mha being drained for forestry, Finland reports sinks and sources of greenhouse gases in forest lands on organic soils following its UNFCCC commitment. We describe a new method for compiling soil CO2 balance that follows changes in tree volume, tree harvests and temperature. An increasing trend of emissions from 1.4 to 7.9 Mt CO2 was calculated for drained peatland forest soils in Finland for 1990–2021.
Siqi Li, Bo Zhu, Xunhua Zheng, Pengcheng Hu, Shenghui Han, Jihui Fan, Tao Wang, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, Wei Zhang, and Yong Li
Biogeosciences, 20, 3555–3572, https://doi.org/10.5194/bg-20-3555-2023, https://doi.org/10.5194/bg-20-3555-2023, 2023
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Physical soil erosion and particulate carbon, nitrogen and phosphorus loss modules were incorporated into the process-oriented hydro-biogeochemical model CNMM-DNDC to realize the accurate simulation of water-induced erosion and subsequent particulate nutrient losses at high spatiotemporal resolution.
Ivan Cornut, Nicolas Delpierre, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, Otavio Campoe, Jose Luiz Stape, Vitoria Fernanda Santos, and Guerric le Maire
Biogeosciences, 20, 3093–3117, https://doi.org/10.5194/bg-20-3093-2023, https://doi.org/10.5194/bg-20-3093-2023, 2023
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Potassium is an essential element for living organisms. Trees are dependent upon this element for certain functions that allow them to build their trunks using carbon dioxide. Using data from experiments in eucalypt plantations in Brazil and a simplified computer model of the plantations, we were able to investigate the effect that a lack of potassium can have on the production of wood. Understanding nutrient cycles is useful to understand the response of forests to environmental change.
Ivan Cornut, Guerric le Maire, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, and Nicolas Delpierre
Biogeosciences, 20, 3119–3135, https://doi.org/10.5194/bg-20-3119-2023, https://doi.org/10.5194/bg-20-3119-2023, 2023
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After simulating the effects of low levels of potassium on the canopy of trees and the uptake of carbon dioxide from the atmosphere by leaves in Part 1, here we tried to simulate the way the trees use the carbon they have acquired and the interaction with the potassium cycle in the tree. We show that the effect of low potassium on the efficiency of the trees in acquiring carbon is enough to explain why they produce less wood when they are in soils with low levels of potassium.
Xiaojuan Yang, Peter Thornton, Daniel Ricciuto, Yilong Wang, and Forrest Hoffman
Biogeosciences, 20, 2813–2836, https://doi.org/10.5194/bg-20-2813-2023, https://doi.org/10.5194/bg-20-2813-2023, 2023
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We evaluated the performance of a land surface model (ELMv1-CNP) that includes both nitrogen (N) and phosphorus (P) limitation on carbon cycle processes. We show that ELMv1-CNP produces realistic estimates of present-day carbon pools and fluxes. We show that global C sources and sinks are significantly affected by P limitation. Our study suggests that introduction of P limitation in land surface models is likely to have substantial consequences for projections of future carbon uptake.
Kevin R. Wilcox, Scott L. Collins, Alan K. Knapp, William Pockman, Zheng Shi, Melinda D. Smith, and Yiqi Luo
Biogeosciences, 20, 2707–2725, https://doi.org/10.5194/bg-20-2707-2023, https://doi.org/10.5194/bg-20-2707-2023, 2023
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The capacity for carbon storage (C capacity) is an attribute that determines how ecosystems store carbon in the future. Here, we employ novel data–model integration techniques to identify the carbon capacity of six grassland sites spanning the US Great Plains. Hot and dry sites had low C capacity due to less plant growth and high turnover of soil C, so they may be a C source in the future. Alternately, cooler and wetter ecosystems had high C capacity, so these systems may be a future C sink.
Ara Cho, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Richard Wehr, and Maarten C. Krol
Biogeosciences, 20, 2573–2594, https://doi.org/10.5194/bg-20-2573-2023, https://doi.org/10.5194/bg-20-2573-2023, 2023
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Carbonyl sulfide (COS) is a useful constraint for estimating photosynthesis. To simulate COS leaf flux better in the SiB4 model, we propose a novel temperature function for enzyme carbonic anhydrase (CA) activity and optimize conductances using observations. The optimal activity of CA occurs below 40 °C, and Ball–Woodrow–Berry parameters are slightly changed. These reduce/increase uptakes in the tropics/higher latitudes and contribute to resolving discrepancies in the COS global budget.
Alexander J. Norton, A. Anthony Bloom, Nicholas C. Parazoo, Paul A. Levine, Shuang Ma, Renato K. Braghiere, and T. Luke Smallman
Biogeosciences, 20, 2455–2484, https://doi.org/10.5194/bg-20-2455-2023, https://doi.org/10.5194/bg-20-2455-2023, 2023
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This study explores how the representation of leaf phenology affects our ability to predict changes to the carbon balance of land ecosystems. We calibrate a new leaf phenology model against a diverse range of observations at six forest sites, showing that it improves the predictive capability of the processes underlying the ecosystem carbon balance. We then show how changes in temperature and rainfall affect the ecosystem carbon balance with this new model.
Libo Wang, Vivek K. Arora, Paul Bartlett, Ed Chan, and Salvatore R. Curasi
Biogeosciences, 20, 2265–2282, https://doi.org/10.5194/bg-20-2265-2023, https://doi.org/10.5194/bg-20-2265-2023, 2023
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Plant functional types (PFTs) are groups of plant species used to represent vegetation distribution in land surface models. There are large uncertainties associated with existing methods for mapping land cover datasets to PFTs. This study demonstrates how fine-resolution tree cover fraction and land cover datasets can be used to inform the PFT mapping process and reduce the uncertainties. The proposed largely objective method makes it easier to implement new land cover products in models.
Jennifer A. Holm, David M. Medvigy, Benjamin Smith, Jeffrey S. Dukes, Claus Beier, Mikhail Mishurov, Xiangtao Xu, Jeremy W. Lichstein, Craig D. Allen, Klaus S. Larsen, Yiqi Luo, Cari Ficken, William T. Pockman, William R. L. Anderegg, and Anja Rammig
Biogeosciences, 20, 2117–2142, https://doi.org/10.5194/bg-20-2117-2023, https://doi.org/10.5194/bg-20-2117-2023, 2023
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Unprecedented climate extremes (UCEs) are expected to have dramatic impacts on ecosystems. We present a road map of how dynamic vegetation models can explore extreme drought and climate change and assess ecological processes to measure and reduce model uncertainties. The models predict strong nonlinear responses to UCEs. Due to different model representations, the models differ in magnitude and trajectory of forest loss. Therefore, we explore specific plant responses that reflect knowledge gaps.
Veronika Kronnäs, Klas Lucander, Giuliana Zanchi, Nadja Stadlinger, Salim Belyazid, and Cecilia Akselsson
Biogeosciences, 20, 1879–1899, https://doi.org/10.5194/bg-20-1879-2023, https://doi.org/10.5194/bg-20-1879-2023, 2023
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In a future climate, extreme droughts might become more common. Climate change and droughts can have negative effects on soil weathering and plant health.
In this study, climate change effects on weathering were studied on sites in Sweden using the model ForSAFE, a climate change scenario and an extreme drought scenario. The modelling shows that weathering is higher during summer and increases with global warming but that weathering during drought summers can become as low as winter weathering.
Agustín Sarquis and Carlos A. Sierra
Biogeosciences, 20, 1759–1771, https://doi.org/10.5194/bg-20-1759-2023, https://doi.org/10.5194/bg-20-1759-2023, 2023
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Although plant litter is chemically and physically heterogenous and undergoes multiple transformations, models that represent litter dynamics often ignore this complexity. We used a multi-model inference framework to include information content in litter decomposition datasets and studied the time it takes for litter to decompose as measured by the transit time. In arid lands, the median transit time of litter is about 3 years and has a negative correlation with mean annual temperature.
Qi Guan, Jing Tang, Lian Feng, Stefan Olin, and Guy Schurgers
Biogeosciences, 20, 1635–1648, https://doi.org/10.5194/bg-20-1635-2023, https://doi.org/10.5194/bg-20-1635-2023, 2023
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Understanding terrestrial sources of nitrogen is vital to examine lake eutrophication changes. Combining process-based ecosystem modeling and satellite observations, we found that land-leached nitrogen in the Yangtze Plain significantly increased from 1979 to 2018, and terrestrial nutrient sources were positively correlated with eutrophication trends observed in most lakes, demonstrating the necessity of sustainable nitrogen management to control eutrophication.
Vivek K. Arora, Christian Seiler, Libo Wang, and Sian Kou-Giesbrecht
Biogeosciences, 20, 1313–1355, https://doi.org/10.5194/bg-20-1313-2023, https://doi.org/10.5194/bg-20-1313-2023, 2023
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The behaviour of natural systems is now very often represented through mathematical models. These models represent our understanding of how nature works. Of course, nature does not care about our understanding. Since our understanding is not perfect, evaluating models is challenging, and there are uncertainties. This paper illustrates this uncertainty for land models and argues that evaluating models in light of the uncertainty in various components provides useful information.
Kamal Nyaupane, Umakant Mishra, Feng Tao, Kyongmin Yeo, William J. Riley, Forrest M. Hoffman, and Sagar Gautam
Biogeosciences Discuss., https://doi.org/10.5194/bg-2023-50, https://doi.org/10.5194/bg-2023-50, 2023
Revised manuscript accepted for BG
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Representing soil organic carbon (SOC) dynamics in Earth system models (ESMs) is a key source of uncertainty in predicting carbon climate feedbacks. We used machine learning to develop and compare predictive relationships in observations and ESMs. We found different relationships between environmental factors and SOC stocks in observations and ESMs. SOC predictions in ESMs may be improved by representing the functional relationships of environmental controllers consistent with observations.
Benjamin S. Felzer
Biogeosciences, 20, 573–587, https://doi.org/10.5194/bg-20-573-2023, https://doi.org/10.5194/bg-20-573-2023, 2023
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The future of the terrestrial carbon sink depends upon the legacy of past land use, which determines the stand age of the forest and nutrient levels in the soil, both of which affect vegetation growth. This study uses a modeling approach to determine the effects of land-use legacy in the conterminous US from 1750 to 2099. Not accounting for land legacy results in a low carbon sink and high biomass, while water variables are not as highly affected.
Bailu Zhao and Qianlai Zhuang
Biogeosciences, 20, 251–270, https://doi.org/10.5194/bg-20-251-2023, https://doi.org/10.5194/bg-20-251-2023, 2023
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In this study, we use a process-based model to simulate the northern peatland's C dynamics in response to future climate change during 1990–2300. Northern peatlands are projected to be a C source under all climate scenarios except for the mildest one before 2100 and C sources under all scenarios afterwards.
We find northern peatlands are a C sink until pan-Arctic annual temperature reaches −2.09 to −2.89 °C. This study emphasizes the vulnerability of northern peatlands to climate change.
Lin Yu, Silvia Caldararu, Bernhard Ahrens, Thomas Wutzler, Marion Schrumpf, Julian Helfenstein, Chiara Pistocchi, and Sönke Zaehle
Biogeosciences, 20, 57–73, https://doi.org/10.5194/bg-20-57-2023, https://doi.org/10.5194/bg-20-57-2023, 2023
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In this study, we addressed a key weakness in current ecosystem models regarding the phosphorus exchange in the soil and developed a new scheme to describe this process. We showed that the new scheme improved the model performance for plant productivity, soil organic carbon, and soil phosphorus content at five beech forest sites in Germany. We claim that this new model could be used as a better tool to study ecosystems under future climate change, particularly phosphorus-limited systems.
Bimal K. Bhattacharya, Kaniska Mallick, Devansh Desai, Ganapati S. Bhat, Ross Morrison, Jamie R. Clevery, William Woodgate, Jason Beringer, Kerry Cawse-Nicholson, Siyan Ma, Joseph Verfaillie, and Dennis Baldocchi
Biogeosciences, 19, 5521–5551, https://doi.org/10.5194/bg-19-5521-2022, https://doi.org/10.5194/bg-19-5521-2022, 2022
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Evaporation retrieval in heterogeneous ecosystems is challenging due to empirical estimation of ground heat flux and complex parameterizations of conductances. We developed a parameter-sparse coupled ground heat flux-evaporation model and tested it across different limits of water stress and vegetation fraction in the Northern/Southern Hemisphere. The model performed particularly well in the savannas and showed good potential for evaporative stress monitoring from thermal infrared satellites.
Jie Zhang, Wenxin Zhang, Per-Erik Jansson, and Søren O. Petersen
Biogeosciences, 19, 4811–4832, https://doi.org/10.5194/bg-19-4811-2022, https://doi.org/10.5194/bg-19-4811-2022, 2022
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In this study, we relied on a properly controlled laboratory experiment to test the model’s capability of simulating the dominant microbial processes and the emissions of one greenhouse gas (nitrous oxide, N2O) from agricultural soils. This study reveals important processes and parameters that regulate N2O emissions in the investigated model framework and also suggests future steps of model development, which have implications on the broader communities of ecosystem modelers.
Jan De Pue, José Miguel Barrios, Liyang Liu, Philippe Ciais, Alirio Arboleda, Rafiq Hamdi, Manuela Balzarolo, Fabienne Maignan, and Françoise Gellens-Meulenberghs
Biogeosciences, 19, 4361–4386, https://doi.org/10.5194/bg-19-4361-2022, https://doi.org/10.5194/bg-19-4361-2022, 2022
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The functioning of ecosystems involves numerous biophysical processes which interact with each other. Land surface models (LSMs) are used to describe these processes and form an essential component of climate models. In this paper, we evaluate the performance of three LSMs and their interactions with soil moisture and vegetation. Though we found room for improvement in the simulation of soil moisture and drought stress, the main cause of errors was related to the simulated growth of vegetation.
Cited articles
Bader, M. Y., Zotz, G., and Lange, O. L.: How to minimize the sampling effort for obtaining reliable estimates of diel and annual CO2 budgets in lichens, Lichenologist, 42, 97–111, https://doi.org/10.1017/S0024282909990338, 2010.
Baldauf, S., Porada, P., Raggio J., Maestre, F. T., and Tietjen, B.: Relative humidity predominantly determines long-term biocrust-forming lichen cover in drylands under climate change, J. Ecol., 109, 1370–1385, https://doi.org/10.1111/1365-2745.13563, 2021.
Belnap, J., Phillips, S. L., and Miller, M. E.: Response of desert biological soil crusts to alterations in precipitation frequency, Oecologia, 141, 306–316, https://doi.org/10.1007/s00442-003-1438-6, 2004.
Belnap, J., Weber, B., and Büdel, B.: Biological Soil Crusts as an
Organizing Principle in Drylands, in: Biological Soil Crusts: An Organizing Principle in Drylands, Ecological Studies 226, edited by: Weber, B., Büdel, B., Belnap, J., Springer International Publishing Switzerland, 3–13, https://doi.org10.1007/978-3-319-30214-0_1, 2016.
Brostoff, W. N., Sharifi, M. R., and Rundel, P. W.: Photosynthesis of cryptobiotic soil crusts in a seasonally inundated system of pans and dunes in the western Mojave Desert, CA: Field studies, Flora: Morphol. Distrib. Funct. Ecol. Plants., 200, 592–600, https://doi.org/10.1016/j.flora.2005.06.008, 2005.
Büdel, B., Colesie, C., Green, T. G. A., Grube, M., Lázaro Suau, R., Loewen-Schneider, K., Maier, S., Peer, T., Pintado, A., Raggio, J., Ruprecht, U., Sancho, L. G., Schroeter, B., Türk, R., Weber, B., Wedin, M., Westberg, M., Williams, L., and Zheng, L.: Improved appreciation of the functioning and importance of biological soil crusts in Europe: The Soil Crust International Project (SCIN), Biodivers. Conserv., 23, 1639–1658, https://doi.org/10.1007/s10531-014-0645-2, 2014.
Büdel, B., Williams, W. J., and Reichenberger, H.: Annual net primary productivity of a cyanobacteria-dominated biological soil crust in the Gulf Savannah, Queensland, Australia, Biogeosciences, 15, 491–505, https://doi.org/10.5194/bg-15-491-2018, 2018.
Chamizo, S., Cantón, Y., Miralles, I., and Domingo, F.: Biological soil crust development affects physicochemical characteristics of soil surface in semiarid ecosystems, Soil Biol. Biochem., 49, 96–105, https://doi.org/10.1016/j.soilbio.2012.02.017, 2012.
Chamizo, S., Rodríguez-Caballero, E., Moro, M. J., and Cantón, Y.: Non-rainfall water inputs: A key water source for biocrust carbon fixation, Sci. Total Environ., 792, 148299, https://doi.org/10.1016/j.scitotenv.2021.148299, 2021.
Coe, K. K., Belnap, J., Grote, E. E., and Sparks, J. P.: Physiological ecology of desert biocrust moss following 10 years exposure to elevated CO2: Evidence for enhanced photosynthetic thermotolerance, Physiol. Plantarum, 144, 346–356, https://doi.org/10.1111/j.1399-3054.2012.01566.x, 2012a.
Coe, K. K., Belnap, J., and Sparks, J. P.: Precipitation-driven carbon balance controls survivorship of desert biocrust mosses, Ecology, 93, 1626–1636, https://doi.org/10.1890/11-2247.1, 2012b.
Colesie, C., Green, T. G. A., Haferkamp, I., and Büdel, B.: Habitat stress initiates changes in composition, CO2 gas exchange and C-allocation as life traits in biological soil crusts, ISME J., 8, 2104–2115, https://doi.org/10.1038/ismej.2014.47, 2014.
Colesie, C., Green, T. G. A., Raggio, J., and Büdel, B.: Summer Activity Patterns of Antarctic and High Alpine Lichendominated Biological Soil Crusts – Similar But Different?, Arct. Antarct. Alp. Res., 48, 449–460, https://doi.org/10.1657/AAAR0015-047, 2016.
Colesie, C., Büdel, B., Hurry, V., and Green, T. G. A.: Can Antarctic lichens acclimatize to changes in temperature?, Glob. Change Biol., 24, 1123–1135, https://doi.org/10.1111/gcb.13984, 2018.
Cowan, I. R., Lange, O. L., and Green, T. G. A.: Carbon-dioxide exchange in lichens: determination of transport and carboxylation characteristics, Planta, 187, 282–294, https://doi.org/10.1007/BF00201952, 1992.
Darrouzet-Nardi, A., Reed, S. C., Grote, E. E., and Belnap, J.: Observations of net soil exchange of CO2 in a dryland show experimental warming increases carbon losses in biocrust soils, Biogeochemistry, 126, 363–378, https://doi.org/10.1007/s10533-015-0163-7, 2015.
Diez, M., Schmitt, D., Küppers, M., Wachendorf, M., Stefan, T., Gypser, S., and Veste, M.: Modelling photosynthesis and carbon fluxes of moss-and lichen-dominated biological soil crusts in temperate dry acid grasslands in Brandenburg, 49th Annual Meeting of the Ecological Society of Germany, Austria and Switzerland, Münster, Germany, 9–13 September 2019.
https://doi.org/10.13140/RG.2.2.27244.51849, 2019.
Dümig, A., Veste, M., Hagedorn, F., Fischer, T., Lange, P., Spröte, R., and Kögel-Knabner, I.: Organic matter from biological soil crusts induces the initial formation of sandy temperate soils, Catena, 122, 196–208, https://doi.org/10.1016/j.catena.2014.06.011, 2014.
Elbert, W., Weber, B., Burrows, S., Steinkamp, J., Büdel, B., Andreae, M. O., and Pöschl, U.: Contribution of cryptogamic covers to the global cycles of carbon and nitrogen, Nat. Geosci., 5, 459–462, https://doi.org/10.1038/ngeo1486, 2012.
Farquhar, G. D. and von Caemmerer, S.: Modelling of Photosynthetic Response to Environmental Conditions, in: Physiological Plant Ecology II. Encyclopedia of Plant Physiology, vol 12/B, edited by: Lange, O. L., Nobel, P. S., Osmond, C. B., and Ziegler, H., Springer, Berlin, Heidelberg, 549–587, https://doi.org/10.1007/978-3-642-68150-9_17, 1982.
Feng, W., Zhang, Y., Wu, B., Qin, S., and Lai, Z.: Influence of Environmental Factors on Carbon Dioxide Exchange in Biological Soil Crusts in Desert Areas, Arid Land Res. Manag., 28, 186–196, https://doi.org/10.1080/15324982.2013.835006, 2014.
Ferrenberg, S., Faist, A. M., Howell, A., and Reed, S. C.: Biocrusts enhance soil fertility and Bromus tectorum growth, and interact with warming to influence germination, Plant Soil, 429, 77–90, https://doi.org/10.1007/s11104-017-3525-1, 2018.
Gauslaa, Y., Lie, M., Solhaug, K. A., and Ohlson, M.: Growth and ecophysiological acclimation of the foliose lichen Lobaria pulmonaria in forests with contrasting light climates, Oecologia, 147, 406–416, https://doi.org/10.1007/s00442-005-0283-1, 2006.
Green, T. G. A. and Lange, O. L.: Ecophysiological adaptations of the lichen genera pseudocyphellaria and sticta to south temperate rainforests, Lichenologist, 23, 267–282, https://doi.org/10.1017/S0024282991000427, 1991.
Haarmeyer, D. H., Luther-Mosebach, J., Dengler, J., Schmiedel, U., Finckh, M., Berger, K., Deckert, J., Domptail, S. E., Dreber, N., Gibreel, T., Grohmann, C., Gröngröft, A., Haensler, A., Hanke, W., Hoffmann, A., Husted, L. B., Kangombe, F. N., Keil, M., Krug, C. B., Labitzky, T., Linke, T., Mager, D., Mey, W., Muche, G., Naumann, C., Pellowski, M., Powrie, L. W., Pröpper, M., Rutherford, M. C., Schneiderat, U., Strohbach, B. J., Vohland, K., Weber, B., Wesuls, D., Wisch, U., Zedda, L., Büdel, B., Darienko, T., Deutschewitz, K., Dojani, S., Erb, E., Falk, T., Friedl, T., Kanzler, S.-E., Limpricht, C., Linsenmair, K. E., Mohr, K., Oliver, T., Petersen, A., Rambold, G., Zeller, U., Austermühle, R., Bausch, J., Bösing, B. M., Classen, N., Dorendorf, J., Dorigo, W., Esler, K. J., Etzold, S., Graiff, A., Grotehusmann, L., Hecht, J., Hoyer, P., Kongor, R. Y., Lang, H., Lieckfeld, L. A. B., Oldeland, J., Peters, J., Röwer, I. U., September, Z. M., Sop, T. K., van Rooyen, M. W., Weber, J., Willer, J., and Jürgens, N.: The BIOTA Observatories, in: Biodiversity in southern Africa. Vol. I: Patterns at local scale – the BIOTA Observatories, edited by: Jürgens, N., Haarmeyer, D. H., Luther-Mosebach, J., Dengler, J., Finckh, M., and Schmiedel, U., Klaus Hess Publisher, Göttingen and Windhoek, 6–801, ISBN 978-3-933117-45-8 (Germany), ISBN 978-99916-57-31-8 (Namibia), 2010.
IPCC: Climate Change 2021: The Physical Science Basis. Contribution of Working Group I to the Sixth Assessment Report of the Intergovernmental Panel on Climate Change, edited by: Masson-Delmotte, V., Zhai, P., Pirani, A., Connors, S. L., Péan, C., Berger, S., Caud, N., Chen, Y., Goldfarb, L., Gomis, M. I., Huang, M., Leitzell, K., Lonnoy, E., Matthews, J. B. R., Maycock, T. K., Waterfield, T., Yelekçi, O., Yu, R., and Zhou, B., Cambridge University Press, Cambridge, United Kingdom and New York, NY, USA, 2391 pp., https://doi.org/10.1017/9781009157896, 2021.
Jeffries, D. L., Link, S. O., and Klopatek, J. M.: CO2 fluxes of cryptogamic crusts: I. Response to resaturation, New Phytol., 125, 163–173, https://doi.org/https://doi.org/10.1111/j.1469-8137.1993.tb03874.x, 1993.
Ladrón de Guevara, M., Lázaro, R., Quero, J. L., Ochoa, V., Gozalo, B., Berdugo, M., Uclés, O., Escolar, C., and Maestre, F. T.: Simulated climate change reduced the capacity of lichen-dominated biocrusts to act as carbon sinks in two semi-arid Mediterranean ecosystems, Biodivers. Conserv., 23, 1787–1807, https://doi.org/10.1007/s10531-014-0681-y, 2014.
Ladrón de Guevara, M., Gozalo, B., Raggio, J., Lafuente, A., Prieto, M., and Maestre, F. T.: Warming reduces the cover, richness and evenness of lichen-dominated biocrusts but promotes moss growth: insights from an 8 yr experiment, New Phytol., 220, 811–823, https://doi.org/10.1111/nph.15000, 2018.
Lange, O. L.: Moisture content and CO2 exchange of lichens – I. Influence of temperature on moisture-dependent net photosynthesis and dark respiration in Ramalina maciformis, Oecologia, 45, 82–87, https://doi.org/10.1007/BF00346710, 1980.
Lange, O. L.: Photosynthetic productivity of the epilithic lichen Lecanora muralis: Long-term field monitoring of CO2 exchange and its physiological interpretation. II. Diel and seasonal patterns of net photosynthesis and respiration, Flora: Morphol. Distrib. Funct. Ecol. Plants, 198, 55–70, https://doi.org/10.1078/0367-2530-00076, 2003a.
Lange, O. L.: Photosynthetic productivity of the epilithic lichen Lecanora muralis: Long-term field monitoring of CO2 exchange and its physiological interpretation. III. Diel, seasonal, and annual carbon budgets, Flora: Morphol. Distrib. Funct. Ecol. Plants, 198, 277–292, https://doi.org/10.1078/0367-2530-00100, 2003b.
Lange, O. L. and Green, T. G. A.: Lichens show that fungi can acclimate their respiration to seasonal changes in temperature, Oecologia, 142, 11–19, https://doi.org/10.1007/s00442-004-1697-x, 2005.
Lange, O. L., Meyer, A., Zellner, H., and Heber, U.: Photosynthesis and Water Relations of Lichen Soil Crusts: Field Measurements in the Coastal Fog Zone of the Namib Desert, Funct. Ecol., 8, 253–264, https://doi.org/10.2307/2389909, 1994.
Lange, O. L., Reichenberger, H., and Meyer, A.: High thallus water content and photosynthetic CO2 exchange of lichens. Laboratory experiments with soil crust species from local xerothermic steppe formations in Franconia, Germany, in: Flechten Follmann: contributions to lichenology in honour of Gerhard Follmann, edited by: Daniels, F., Schulz, M., Peine, J., Geobotanical and Phytotaxonomical Study Group, University of Cologne, Cologne, 139–153, ISBN 3 87429 380 7, 1995.
Lange, O. L., Belnap, J., Reichenberger, H., and Meyer, A.: Photosynthesis of green algal soil crust lichens from arid lands in southern Utah, USA: Role of water content on light and temperature responses of CO2 exchange, Flora, 192, 1–15, https://doi.org/10.1016/S0367-2530(17)30749-1, 1997.
Lange, O. L., Belnap, J., and Reichenberger, H.: Photosynthesis of the cyanobacterial soil-crust lichen Collema tenax from arid lands in southern Utah, USA: Role of water content on light and temperature responses of CO2 exchange, Funct. Ecol., 12, 195–202, https://doi.org/10.1046/j.1365-2435.1998.00192.x, 1998.
Lange, O. L., Green, T. G. A., Melzer, B., Meyer, A., and Zellner, H.: Water relations and CO2 exchange of the terrestrial lichen Teloschistes capensis in the Namib fog desert: Measurements during two seasons in the field and under controlled conditions, Flora – Morphol. Distrib. Funct. Ecol. Plants, 201, 268–280, https://doi.org/10.1016/j.flora.2005.08.003, 2006.
Li, X., Hui, R., Zhang, P., and Song, N.: Divergent responses of moss- and lichen-dominated biocrusts to warming and increased drought in arid desert regions, Agr. Forest Meteorol., 303, 108387, https://doi.org/10.1016/j.agrformet.2021.108387, 2021.
Ma, Y.: Ma_et_al: Carbon balance Modelling, Zenodo [code], https://doi.org/10.5281/zenodo.7756960, 2023.
Maestre, F. T., Escolar, C., Ladrón de Guevara, M., Quero, J. L., Lázaro, R., Delgado-Baquerizo, M., Ochoa, V., Berdugo, M., Gozalo, B., and Gallardo, A.: Changes in biocrust cover drive carbon cycle responses to climate change in drylands, Glob. Change Biol., 19, 3835–3847, https://doi.org/10.1111/gcb.12306, 2013.
Ouyang, H., Lan, S., Yang, H., and Hu, C.: Mechanism of biocrusts boosting and utilizing non-rainfall water in Hobq Desert of China, Appl. Soil Ecol., 120, 70–80, https://doi.org/10.1016/j.apsoil.2017.07.024, 2017.
Petersen, I., Weber, B., Lahajnar, N., Wang, Z., Jensen, K., and Porada, P.: Effects of nutrient content on photosynthetic capacity and respiration of non-vascular photoautotrophs, Plant Cell Environ., in review, 2023.
Phinney, N. H., Gauslaa, Y., Palmqvist, K., and Esseen, P. A.: Macroclimate drives growth of hair lichens in boreal forest canopies, J. Ecol., 109, 478–490, https://doi.org/10.1111/1365-2745.13522, 2021.
Porada, P., Weber, B., Elbert, W., Pöschl, U., and Kleidon, A.: Estimating global carbon uptake by lichens and bryophytes with a process-based model, Biogeosciences, 10, 6989–7033, https://doi.org/10.5194/bg-10-6989-2013, 2013.
Porada, P., Tamm, A., Raggio, J., Cheng, Y., Kleidon, A., Pöschl, U., and Weber, B.: Global NO and HONO emissions of biological soil crusts estimated by a process-based non-vascular vegetation model, Biogeosciences, 16, 2003–2031, https://doi.org/10.5194/bg-16-2003-2019, 2019.
Proctor, M.: Patterns of desiccation tolerance and recovery in bryophytes, Plant Growth Regul., 35, 147–156, https://doi.org/10.1023/A:1014429720821, 2001.
Raggio, J., Pintado, A., Vivas, M., Sancho, L. G., Büdel, B., Colesie, C., Weber, B., Schroeter, B., Lázaro, R., and Green, T. G. A.: Continuous chlorophyll fluorescence, gas exchange and microclimate monitoring in a natural soil crust habitat in Tabernas badlands, Almería, Spain: Progressing towards a model to understand productivity, Biodivers. Conserv., 23, 1809–1826, https://doi.org/10.1007/s10531-014-0692-8, 2014.
Raggio, J., Green, T. G. A., Sancho, L. G., Pintado, A., Colesie, C., Weber, B., and Büdel, B.: Metabolic activity duration can be effectively predicted from macroclimatic data for biological soil crust habitats across Europe, Geoderma, 306, 10–17, https://doi.org/10.1016/j.geoderma.2017.07.001, 2017.
Raggio, J., Green, T. G. A., Pintado, A., Sancho, L. G., and Büdel, B.: Environmental determinants of biocrust carbon fluxes across Europe: possibilities for a functional type approach, Plant Soil, 429, 147–157, https://doi.org/10.1007/s11104-018-3646-1, 2018.
Reed, S. C., Coe, K. K., Sparks, J. P., Housman, D. C., Zelikova, T. J., and Belnap, J.: Changes to dryland rainfall result in rapid moss mortality and altered soil fertility, Nat. Clim. Change, 2, 752–755, https://doi.org/10.1038/nclimate1596, 2012.
Schuur, E. A. G., Crummer, K. G., Vogel, J. G., and Mack, M. C.: Plant species composition and productivity following permafrost thaw and thermokarst in Alaskan tundra, Ecosystems, 10, 280–292, https://doi.org/10.1007/s10021-007-9024-0, 2007.
Tamm, A., Caesar, J., Kunz, N., Colesie, C., Reichenberger, H., and Weber, B.: Ecophysiological properties of three biological soil crust types and their photoautotrophs from the Succulent Karoo, South Africa, Plant Soil, 429, 127–146, https://doi.org/10.1007/s11104-018-3635-4, 2018.
Veste, M. and Littmann, T.: Dewfall and its Geo-ecological Implication for Biological Surface Crusts in Desert Sand Dunes (North-western Negev, Israel), J. Arid Land Stud., 16, 139–147, 2006.
Veste, M., Heusinkveld, B. G., Berkowicz, S. M., Breckle, S.-W., Littmann, T., and Jacobs, A. F. G.: Dew formation and activity of biological soil crusts, in: Arid Dune Ecosystems – The Nizzana Sands in the Negev Desert, Ecological Studies 200, edited by: Breckle, S.-W., Yair, A., and Veste, M., Springer, 305–318, https://doi.org/10.1007/978-3-540-75498-5_21, 2008.
Vivas, M., Pérez-Ortega, S., Pintado, A., and Sancho, L. G:
Wagner, S., Zotz, G., and Bader, M. Y.: The temperature acclimation potential of tropical bryophytes, Plant Biol., 16, 117–124, https://doi.org/10.1111/plb.12037, 2014.
Walker, A. P., Beckerman, A. P., Gu, L., Kattge, J., Cernusak, L. A., Domingues, T. F., Scales, J. C., Wohlfahrt, G., Wullschleger, S. D., and Woodward, F. I.: The relationship of leaf photosynthetic traits – Vcmax and Jmax – to leaf nitrogen, leaf phosphorus, and specific leaf area: a meta-analysis and modeling study, Ecol. Evol., 4, 3218–3235, https://doi.org/10.1002/ece3.1173, 2014.
Weber, B., Graf, T., and Bass, M.: Ecophysiological analysis of moss-dominated biological soil crusts and their separate components from the Succulent Karoo, South Africa, Planta, 236, 129–139, https://doi.org/10.1007/s00425-012-1595-0, 2012.
Weber, B., Berkemeier, T., Ruckteschler, N., Caesar, J., Heintz, H., Ritter, H., and Braß, H.: Development and calibration of a novel sensor to quantify the water content of surface soils and biological soil crusts, Methods Ecol. Evol., 7, 14–22, https://doi.org/10.1111/2041-210X.12459, 2016.
Zhao, Y., Zhang, Z., Hu, Y., and Chen, Y.: The seasonal and successional variations of carbon release from biological soil crust-covered soil, J. Arid Environ., 127, 148–153, https://doi.org/10.1016/j.jaridenv.2015.11.012, 2016.
Zotz, G., Schultz, S., and Rottenberger, S.: Are tropical lowlands a marginal habitat for macrolichens? Evidence from a field study with Parmotrema endosulphureum in Panama, Flora: Morphol. Distrib. Funct. Ecol. Plants, 198, 71–77, https://doi.org/10.1078/0367-2530-00077, 2003.
Short summary
We found that the modelled annual carbon balance of biocrusts is strongly affected by both the environment (mostly air temperature and CO2 concentration) and physiology, such as temperature response of respiration. However, the relative impacts of these drivers vary across regions with different climates. Uncertainty in driving factors may lead to unrealistic carbon balance estimates, particularly in temperate climates, and may be explained by seasonal variation of physiology due to acclimation.
We found that the modelled annual carbon balance of biocrusts is strongly affected by both the...
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