Articles | Volume 12, issue 4
https://doi.org/10.5194/bg-12-1131-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-12-1131-2015
© Author(s) 2015. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Research article
| 
24 Feb 2015
Research article |
| 24 Feb 2015
A global carbon assimilation system based on a dual optimization method
H. Zheng
Department of Statistics, School of Mathematical Sciences, Beijing Normal University, Beijing 100875, China
Y. Li
CORRESPONDING AUTHOR
Department of Statistics, School of Mathematical Sciences, Beijing Normal University, Beijing 100875, China
J. M. Chen
CORRESPONDING AUTHOR
Department of Geography and Program in Planning, University of Toronto, Toronto, M5S 3G3, Canada
International Institute of Earth System Science, Nanjing University, Nanjing 210093, China
Department of Mathematics and Statistics, University of Otago, Dunedin 9016, New Zealand
Q. Huang
Department of Statistics, School of Mathematical Sciences, Beijing Normal University, Beijing 100875, China
W. X. Huang
Department of Statistics, School of Mathematical Sciences, Beijing Normal University, Beijing 100875, China
L. H. Wang
Department of Statistics, School of Mathematical Sciences, Beijing Normal University, Beijing 100875, China
S. M. Li
Department of Statistics, School of Mathematical Sciences, Beijing Normal University, Beijing 100875, China
W. P. Yuan
College of Global Change and Earth System Science, Beijing Normal University, Beijing 100875, China
X. Zheng
College of Global Change and Earth System Science, Beijing Normal University, Beijing 100875, China
S. P. Zhang
College of Global Change and Earth System Science, Beijing Normal University, Beijing 100875, China
Z. Q. Chen
College of Global Change and Earth System Science, Beijing Normal University, Beijing 100875, China
International Institute of Earth System Science, Nanjing University, Nanjing 210093, China
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Earth Syst. Sci. Data, 17, 965–1039, https://doi.org/10.5194/essd-17-965-2025, https://doi.org/10.5194/essd-17-965-2025, 2025
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Rong Shang, Xudong Lin, Jing M. Chen, Yunjian Liang, Keyan Fang, Mingzhu Xu, Yulin Yan, Weimin Ju, Guirui Yu, Nianpeng He, Li Xu, Liangyun Liu, Jing Li, Wang Li, Jun Zhai, and Zhongmin Hu
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Revised manuscript under review for ESSD
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Forest age is critical for carbon cycle modelling and effective forest management. Existing datasets, however, have low spatial resolutions or limited temporal coverage. This study introduces China's Annual Forest Age Dataset (CAFA), spanning 1986–2022 at 30-m resolution. By tracking forest disturbances, we annually update ages. Validation shows small errors for disturbed forests and larger for undisturbed forests. CAFA can enhance carbon cycle modelling and forest management in China.
Ran Yan, Jun Wang, Weimin Ju, Xiuli Xing, Miao Yu, Meirong Wang, Jingye Tan, Xunmei Wang, Hengmao Wang, and Fei Jiang
Biogeosciences, 21, 5027–5043, https://doi.org/10.5194/bg-21-5027-2024, https://doi.org/10.5194/bg-21-5027-2024, 2024
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Our study reveals that the effects of the El Niño–Southern Oscillation (ENSO) and Indian Ocean Dipole (IOD) on China's gross primary production (GPP) are basically opposite, with obvious seasonal changes. Soil moisture primarily influences GPP during ENSO events (except spring) and temperature during IOD events (except fall). Quantitatively, China's annual GPP displays modest positive anomalies during La Niña and negative anomalies in El Niño years, driven by significant seasonal variations.
Huajie Zhu, Mousong Wu, Fei Jiang, Michael Vossbeck, Thomas Kaminski, Xiuli Xing, Jun Wang, Weimin Ju, and Jing M. Chen
Geosci. Model Dev., 17, 6337–6363, https://doi.org/10.5194/gmd-17-6337-2024, https://doi.org/10.5194/gmd-17-6337-2024, 2024
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In this work, we developed the Nanjing University Carbon Assimilation System (NUCAS v1.0). Data assimilation experiments were conducted to demonstrate the robustness and investigate the feasibility and applicability of NUCAS. The assimilation of ecosystem carbonyl sulfide (COS) fluxes improved the model performance in gross primary productivity, evapotranspiration, and sensible heat, showing that COS provides constraints on parameters relevant to carbon-, water-, and energy-related processes.
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Ecosystem carbonyl sulfide (COS) fluxes were employed to optimize GPP estimation across ecosystems with the Biosphere-atmosphere Exchange Process Simulator (BEPS), which was developed for simulating the canopy COS uptake under its state-of-the-art two-leaf modeling framework. Our results showcased the efficacy of COS in improving model prediction and reducing prediction uncertainty of GPP and enhanced insights into the sensitivity, identifiability, and interactions of parameters related to COS.
Shuzhuang Feng, Fei Jiang, Tianlu Qian, Nan Wang, Mengwei Jia, Songci Zheng, Jiansong Chen, Fang Ying, and Weimin Ju
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Jiye Leng, Jing M. Chen, Wenyu Li, Xiangzhong Luo, Mingzhu Xu, Jane Liu, Rong Wang, Cheryl Rogers, Bolun Li, and Yulin Yan
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We document the system development and application of a Regional multi-Air Pollutant Assimilation System (RAPAS v1.0). This system is developed to optimize gridded source emissions of CO, SO2, NOx, primary PM2.5, and coarse PM10 on a regional scale via simultaneously assimilating surface measurements of CO, SO2, NO2, PM2.5, and PM10. A series of sensitivity experiments demonstrates the advantage of the “two-step” inversion strategy and the robustness of the system in estimating the emissions.
Jing M. Chen, Rong Wang, Yihong Liu, Liming He, Holly Croft, Xiangzhong Luo, Han Wang, Nicholas G. Smith, Trevor F. Keenan, I. Colin Prentice, Yongguang Zhang, Weimin Ju, and Ning Dong
Earth Syst. Sci. Data, 14, 4077–4093, https://doi.org/10.5194/essd-14-4077-2022, https://doi.org/10.5194/essd-14-4077-2022, 2022
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Green leaves contain chlorophyll pigments that harvest light for photosynthesis and also emit chlorophyll fluorescence as a byproduct. Both chlorophyll pigments and fluorescence can be measured by Earth-orbiting satellite sensors. Here we demonstrate that leaf photosynthetic capacity can be reliably derived globally using these measurements. This new satellite-based information overcomes a bottleneck in global ecological research where such spatially explicit information is currently lacking.
Fei Jiang, Weimin Ju, Wei He, Mousong Wu, Hengmao Wang, Jun Wang, Mengwei Jia, Shuzhuang Feng, Lingyu Zhang, and Jing M. Chen
Earth Syst. Sci. Data, 14, 3013–3037, https://doi.org/10.5194/essd-14-3013-2022, https://doi.org/10.5194/essd-14-3013-2022, 2022
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A 10-year (2010–2019) global monthly terrestrial NEE dataset (GCAS2021) was inferred from the GOSAT ACOS v9 XCO2 product. It shows strong carbon sinks over eastern N. America, the Amazon, the Congo Basin, Europe, boreal forests, southern China, and Southeast Asia. It has good quality and can reflect the impacts of extreme climates and large-scale climate anomalies on carbon fluxes well. We believe that this dataset can contribute to regional carbon budget assessment and carbon dynamics research.
Fei Jiang, Hengmao Wang, Jing M. Chen, Weimin Ju, Xiangjun Tian, Shuzhuang Feng, Guicai Li, Zhuoqi Chen, Shupeng Zhang, Xuehe Lu, Jane Liu, Haikun Wang, Jun Wang, Wei He, and Mousong Wu
Atmos. Chem. Phys., 21, 1963–1985, https://doi.org/10.5194/acp-21-1963-2021, https://doi.org/10.5194/acp-21-1963-2021, 2021
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We present a 6-year inversion from 2010 to 2015 for the global and regional carbon fluxes using only the GOSAT XCO2 retrievals. We find that the XCO2 retrievals could significantly improve the modeling of atmospheric CO2 concentrations and that the inferred interannual variations in the terrestrial carbon fluxes in most land regions have a better relationship with the changes in severe drought area or leaf area index, or are more consistent with the previous estimates about drought impact.
Yi Zheng, Ruoque Shen, Yawen Wang, Xiangqian Li, Shuguang Liu, Shunlin Liang, Jing M. Chen, Weimin Ju, Li Zhang, and Wenping Yuan
Earth Syst. Sci. Data, 12, 2725–2746, https://doi.org/10.5194/essd-12-2725-2020, https://doi.org/10.5194/essd-12-2725-2020, 2020
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Accurately reproducing the interannual variations in vegetation gross primary production (GPP) is a major challenge. A global GPP dataset was generated by integrating the regulations of several major environmental variables with long-term changes. The dataset can effectively reproduce the spatial, seasonal, and particularly interannual variations in global GPP. Our study will contribute to accurate carbon flux estimates at long timescales.
Bo Dan, Xiaogu Zheng, Guocan Wu, and Tao Li
Hydrol. Earth Syst. Sci., 24, 5187–5201, https://doi.org/10.5194/hess-24-5187-2020, https://doi.org/10.5194/hess-24-5187-2020, 2020
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Data assimilation is a procedure to generate an optimal combination of the state variable in geoscience, based on the model outputs and observations. The ensemble Kalman filter (EnKF) scheme is a widely used assimilation method in soil moisture estimation. This study proposed several modifications of EnKF for improving this assimilation. The study shows that the quality of the assimilation result is improved, while the degree of water budget imbalance is reduced.
Zhi-Zhen Ni, Kun Luo, Yang Gao, Xiang Gao, Fei Jiang, Cheng Huang, Jian-Ren Fan, Joshua S. Fu, and Chang-Hong Chen
Atmos. Chem. Phys., 20, 5963–5976, https://doi.org/10.5194/acp-20-5963-2020, https://doi.org/10.5194/acp-20-5963-2020, 2020
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The Weather Research Forecast with Chemistry (WRF-Chem) model was used to simulate spatial and temporal O3 evolution in the Yangtze River Delta (YRD) region. Various atmospheric processes were analyzed to determine the influential factors of ozone formation through the integrated process rate method. This paper provides insight into urban O3 formation and dispersion during tropical cyclone events and supports the Model Intercomparison Study Asia Phase III (MICS-Asia Phase III).
Hengmao Wang, Fei Jiang, Jun Wang, Weimin Ju, and Jing M. Chen
Atmos. Chem. Phys., 19, 12067–12082, https://doi.org/10.5194/acp-19-12067-2019, https://doi.org/10.5194/acp-19-12067-2019, 2019
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The differences in inverted global and regional carbon fluxes from GOSAT and OCO-2 XCO2 from 1 January to 31 December 2015 are studied. We find significant differences for inverted terrestrial carbon fluxes on both global and regional scales. Overall, GOSAT XCO2 has a better performance than OCO-2, and GOSAT data can effectively improve carbon flux estimates in the Northern Hemisphere, while OCO-2 data, with the specific version used in this study, show only slight improvement.
Xiaojin Qian, Liangyun Liu, Holly Croft, and Jingming Chen
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-228, https://doi.org/10.5194/bg-2019-228, 2019
Preprint withdrawn
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The leaf maximum carboxylation rate (Vcmax) is a key photosynthesis parameter. We attempt to investigate whether a universal and stable relationship exists between leaf Vcmax25 and chlorophyll content across different C3 plant types from a plant physiological perspective and verify it using field experiments. The results confirm that leaf chlorophyll can be a reliable proxy for estimating Vcmax25, providing an operational approach for the global mapping of Vcmax25 across different plant types.
Xufei Liu, Xiaopu Lyu, Yu Wang, Fei Jiang, and Hai Guo
Atmos. Chem. Phys., 19, 5127–5145, https://doi.org/10.5194/acp-19-5127-2019, https://doi.org/10.5194/acp-19-5127-2019, 2019
Anna Katinka Petersen, Guy P. Brasseur, Idir Bouarar, Johannes Flemming, Michael Gauss, Fei Jiang, Rostislav Kouznetsov, Richard Kranenburg, Bas Mijling, Vincent-Henri Peuch, Matthieu Pommier, Arjo Segers, Mikhail Sofiev, Renske Timmermans, Ronald van der A, Stacy Walters, Ying Xie, Jianming Xu, and Guangqiang Zhou
Geosci. Model Dev., 12, 1241–1266, https://doi.org/10.5194/gmd-12-1241-2019, https://doi.org/10.5194/gmd-12-1241-2019, 2019
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An operational multi-model forecasting system for air quality is providing daily forecasts of ozone, nitrogen oxides, and particulate matter for 37 urban areas of China. The paper presents the evaluation of the different forecasts performed during the first year of operation.
Xiaopu Lyu, Nan Wang, Hai Guo, Likun Xue, Fei Jiang, Yangzong Zeren, Hairong Cheng, Zhe Cai, Lihui Han, and Ying Zhou
Atmos. Chem. Phys., 19, 3025–3042, https://doi.org/10.5194/acp-19-3025-2019, https://doi.org/10.5194/acp-19-3025-2019, 2019
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Through analyses on the synoptic systems, pollution characteristics of O3 precursors, and modeling of local O3 formation and processes influencing O3 level, we found that this O3 pollution event was induced by a uniform pressure field over the Shandong Peninsula and also aggravated by a low-pressure trough in the last few days. This finding indicated that the NCP might be an O3 source region, which exported photochemical pollution to the adjoining regions or even to the neighboring countries.
Guy P. Brasseur, Ying Xie, Anna Katinka Petersen, Idir Bouarar, Johannes Flemming, Michael Gauss, Fei Jiang, Rostislav Kouznetsov, Richard Kranenburg, Bas Mijling, Vincent-Henri Peuch, Matthieu Pommier, Arjo Segers, Mikhail Sofiev, Renske Timmermans, Ronald van der A, Stacy Walters, Jianming Xu, and Guangqiang Zhou
Geosci. Model Dev., 12, 33–67, https://doi.org/10.5194/gmd-12-33-2019, https://doi.org/10.5194/gmd-12-33-2019, 2019
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An operational multi-model forecasting system for air quality provides daily forecasts of ozone, nitrogen oxides, and particulate matter for 37 urban areas in China. The paper presents an intercomparison of the different forecasts performed during a specific period of time and highlights recurrent differences between the model output. Pathways to improve the forecasts by the multi-model system are suggested.
Derong Zhou, Ke Ding, Xin Huang, Lixia Liu, Qiang Liu, Zhengning Xu, Fei Jiang, Congbin Fu, and Aijun Ding
Atmos. Chem. Phys., 18, 16345–16361, https://doi.org/10.5194/acp-18-16345-2018, https://doi.org/10.5194/acp-18-16345-2018, 2018
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We investigate the vertical distribution, transport characteristics, source contribution and meteorological feedback of dust, biomass burning and fossil fuel combustion aerosols for a unique pollution episode that occurred in late March 2015 in eastern Asia, based on various measurement data and modeling methods. We found that cold front played an important role in the long-range transport of different pollutants and caused a three-layer vertical structure of pollutants over eastern China.
Jun Wang, Ning Zeng, Meirong Wang, Fei Jiang, Jingming Chen, Pierre Friedlingstein, Atul K. Jain, Ziqiang Jiang, Weimin Ju, Sebastian Lienert, Julia Nabel, Stephen Sitch, Nicolas Viovy, Hengmao Wang, and Andrew J. Wiltshire
Atmos. Chem. Phys., 18, 10333–10345, https://doi.org/10.5194/acp-18-10333-2018, https://doi.org/10.5194/acp-18-10333-2018, 2018
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Based on the Mauna Loa CO2 records and TRENDY multi-model historical simulations, we investigate the different impacts of EP and CP El Niños on interannual carbon cycle variability. Composite analysis indicates that the evolutions of CO2 growth rate anomalies have three clear differences in terms of precursors (negative and neutral), amplitudes (strong and weak), and durations of peak (Dec–Apr and Oct–Jan) during EP and CP El Niños, respectively. We further discuss their terrestrial mechanisms.
Zhi-zhen Ni, Kun Luo, Yang Gao, Fei Jiang, Xiang Gao, Jian-ren Fan, and Chang-hong Chen
Atmos. Chem. Phys. Discuss., https://doi.org/10.5194/acp-2018-76, https://doi.org/10.5194/acp-2018-76, 2018
Revised manuscript not accepted
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A unique mechanism was found to modulate the high ozone episodes in Hangzhou during G20 summit: Driven by tropical cyclone convergence, prevailing north winds brought in emission sources; with invasion of tropical cycle, subsidence air and stagnant weather was induced, as well as the urban heat island effect, intensifying the ozone enhancement. Different atmospheric processes were further analyzed to elucidate the control factors of ozone formation through integrated process rate method.
Hao Wang, Xiaopu Lyu, Hai Guo, Yu Wang, Shichun Zou, Zhenhao Ling, Xinming Wang, Fei Jiang, Yangzong Zeren, Wenzhuo Pan, Xiaobo Huang, and Jin Shen
Atmos. Chem. Phys., 18, 4277–4295, https://doi.org/10.5194/acp-18-4277-2018, https://doi.org/10.5194/acp-18-4277-2018, 2018
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While oceanic air is generally thought to be clean, the air pollution over waters in proximity to the coasts is not well recognized. This research indicated that ozone was higher over South China Sea (SCS) than that in the adjacent continental area, while continental anticyclone, tropical cyclone and land breeze favored O3 formation over SCS. In addition, weaker NO titration and stronger atmospheric oxidative capacity led to higher O3 production efficiency over SCS.
Jun Wang, Ning Zeng, Meirong Wang, Fei Jiang, Hengmao Wang, and Ziqiang Jiang
Earth Syst. Dynam., 9, 1–14, https://doi.org/10.5194/esd-9-1-2018, https://doi.org/10.5194/esd-9-1-2018, 2018
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Behaviors of terrestrial ecosystems differ in different El Niños. We analyze terrestrial carbon cycle responses to two extreme El Niños (2015/16 and 1997/98), and find large differences. We find that global land–atmosphere carbon flux anomaly was about 2 times smaller in 2015/16 than in 1997/98 event, without the obvious lagged response. Then we illustrate the climatic and biological mechanisms of the different terrestrial carbon cycle responses in 2015/16 and 1997/98 El Niños regionally.
Guocan Wu and Xiaogu Zheng
Nonlin. Processes Geophys., 24, 329–341, https://doi.org/10.5194/npg-24-329-2017, https://doi.org/10.5194/npg-24-329-2017, 2017
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The accuracy of the assimilation results crucially relies on the estimate accuracy of forecast error covariance matrix in data assimilation. Ensemble Kalman filter estimates the forecast error covariance matrix as the sampling covariance matrix of the ensemble forecast states, which need to be further inflated. The experiment results on the Lorenz-96 model show that the analysis error is reduced and the analysis sensitivity to observations is improved using the proposed inflation technique.
Yang Liu, Ronggao Liu, Jan Pisek, and Jing M. Chen
Biogeosciences, 14, 1093–1110, https://doi.org/10.5194/bg-14-1093-2017, https://doi.org/10.5194/bg-14-1093-2017, 2017
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Forest overstory and understory layers differ in carbon and water cycle regimes and phenology, as well as ecosystem functions. In this paper, overstory and understory LAI values were estimated separately for global needleleaf and deciduous broadleaf forests. This work would help us better understand the seasonal patterns of forest structure, evaluate the ecosystem functions and improve the modeling of the forest carbon and water cycles.
Chengcheng Huang, Andrew J. Newman, Martyn P. Clark, Andrew W. Wood, and Xiaogu Zheng
Hydrol. Earth Syst. Sci., 21, 635–650, https://doi.org/10.5194/hess-21-635-2017, https://doi.org/10.5194/hess-21-635-2017, 2017
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This study examined the potential of snow water equivalent data assimilation to improve seasonal streamflow predictions. We examined aspects of the data assimilation system over basins with varying climates across the western US. We found that varying how the data assimilation system is implemented impacts forecast performance, and basins with good initial calibrations see less benefit. This implies that basin-specific configurations and benefits should be expected given this modeling system.
S. Zhang, X. Zheng, J. M. Chen, Z. Chen, B. Dan, X. Yi, L. Wang, and G. Wu
Geosci. Model Dev., 8, 805–816, https://doi.org/10.5194/gmd-8-805-2015, https://doi.org/10.5194/gmd-8-805-2015, 2015
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A Global Carbon Assimilation System based on the Ensemble Kalman filter (GCAS-EK) is developed for assimilating atmospheric CO2 data into an ecosystem model to simultaneously estimate the surface carbon fluxes and atmospheric CO2 distribution. This assimilation approach is similar to CarbonTracker, but with several new developments. The results showed that this assimilation approach can effectively reduce the biases and uncertainties of the carbon fluxes simulated by the ecosystem model.
K. Ding, J. Liu, A. Ding, Q. Liu, T. L. Zhao, J. Shi, Y. Han, H. Wang, and F. Jiang
Atmos. Chem. Phys., 15, 2843–2866, https://doi.org/10.5194/acp-15-2843-2015, https://doi.org/10.5194/acp-15-2843-2015, 2015
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1. High CO abundances of 300-550 ppbv is shown in aircraft MOZAIC data between 700 and 300 hPa over East Asia in three episodes. Correspondingly, elevated CO is observed in satellite MOPITT data at similar altitudes.
2. GEOS-Chem and FLEXPART simulations reveal distinct uplifting processes for CO from fires and anthropogenic sources in the cases.
3. Topography in East Asia affects uplifting of CO in different ways.
4. The new version 5 MOPITT data can help diagnose vertical transport of CO.
F. Jiang, H. M. Wang, J. M. Chen, T. Machida, L. X. Zhou, W. M. Ju, H. Matsueda, and Y. Sawa
Atmos. Chem. Phys., 14, 10133–10144, https://doi.org/10.5194/acp-14-10133-2014, https://doi.org/10.5194/acp-14-10133-2014, 2014
G. Wu, X. Yi, L. Wang, X. Liang, S. Zhang, X. Zhang, and X. Zheng
Nonlin. Processes Geophys., 21, 955–970, https://doi.org/10.5194/npg-21-955-2014, https://doi.org/10.5194/npg-21-955-2014, 2014
M. Liu, H. Wang, H. Wang, T. Oda, Y. Zhao, X. Yang, R. Zang, B. Zang, J. Bi, and J. Chen
Atmos. Chem. Phys., 13, 10873–10882, https://doi.org/10.5194/acp-13-10873-2013, https://doi.org/10.5194/acp-13-10873-2013, 2013
F. Jiang, H. W. Wang, J. M. Chen, L. X. Zhou, W. M. Ju, A. J. Ding, L. X. Liu, and W. Peters
Biogeosciences, 10, 5311–5324, https://doi.org/10.5194/bg-10-5311-2013, https://doi.org/10.5194/bg-10-5311-2013, 2013
W. P. Yuan, D. Liu, W. J. Dong, S. G. Liu, G. S. Zhou, G. R. Yu, T. B. Zhao, J. M. Feng, Z. G. Ma, J. Q. Chen, Y. Chen, S. P. Chen, S. J. Han, J. P. Huang, L. H. Li, H. Z. Liu, S. M. Liu, M. G. Ma, Y. F. Wang, J. Z. Xia, W. F. Xu, Q. Zhang, X. Q. Zhao, and L. Zhao
Biogeosciences Discuss., https://doi.org/10.5194/bgd-10-1605-2013, https://doi.org/10.5194/bgd-10-1605-2013, 2013
Revised manuscript not accepted
Related subject area
Biogeochemistry: Air - Land Exchange
An elucidatory model of oxygen's partial pressure inside substomatal cavities
Aggregation of ice-nucleating macromolecules from Betula pendula pollen determines ice nucleation efficiency
Evaluating adsorption isotherm models for determining the partitioning of ammonium between soil and soil pore water in environmental soil samples
Similar freezing spectra of particles in plant canopies and in the air at a high-altitude site
Anticorrelation of net uptake of atmospheric CO2 by the world ocean and terrestrial biosphere in current carbon cycle models
Peltigera lichen thalli produce highly efficient ice nucleating agents
Altered Seasonal Sensitivity of Net Ecosystem Exchange to Controls Driven by Nutrient Balances in a Semi-arid Savanna
Impact of meteorological conditions on the biogenic volatile organic compound (BVOC) emission rate from eastern Mediterranean vegetation under drought
Monitoring cropland daily carbon dioxide exchange at field scales with Sentinel-2 satellite imagery
Compound soil and atmospheric drought (CSAD) events and CO2 fluxes of a mixed deciduous forest: the occurrence, impact, and temporal contribution of main drivers
The influence of plant water stress on vegetation–atmosphere exchanges: implications for ozone modelling
High interspecific variability in ice nucleation activity suggests pollen ice nucleators are incidental
Using automated machine learning for the upscaling of gross primary productivity
Interpretability of negative latent heat fluxes from eddy covariance measurements in dry conditions
Forest-floor respiration, N2O fluxes, and CH4 fluxes in a subalpine spruce forest: drivers and annual budgets
Constraining 2010–2020 Amazonian carbon flux estimates with satellite solar-induced fluorescence (SIF)
Enhanced net CO2 exchange of a semideciduous forest in the southern Amazon due to diffuse radiation from biomass burning
Observational relationships between ammonia, carbon dioxide and water vapor under a wide range of meteorological and turbulent conditions: RITA-2021 campaign
Environmental controls of winter soil carbon dioxide fluxes in boreal and tundra environments
Origin of secondary fatty alcohols in atmospheric aerosols in a cool–temperate forest based on their mass size distributions
Sap flow and leaf gas exchange response to a drought and heatwave in urban green spaces in a Nordic city
Changes in biogenic volatile organic compound emissions in response to the El Niño–Southern Oscillation
Rethinking the deployment of static chambers for CO2 flux measurement in dry desert soils
Lichen species across Alaska produce highly active and stable ice nucleators
A differentiable, physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Snow–vegetation–atmosphere interactions in alpine tundra
Synergy between TROPOMI sun-induced chlorophyll fluorescence and MODIS spectral reflectance for understanding the dynamics of gross primary productivity at Integrated Carbon Observatory System (ICOS) ecosystem flux sites
Atmospheric deposition of reactive nitrogen to a deciduous forest in the southern Appalachian Mountains
Tropical cyclones facilitate recovery of forest leaf area from dry spells in East Asia
Minor contributions of daytime monoterpenes are major contributors to atmospheric reactivity
Using atmospheric observations to quantify annual biogenic carbon dioxide fluxes on the Alaska North Slope
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part II: Modeling annual budgets
Growth and actual leaf temperature modulate CO2 responsiveness of monoterpene emissions from holm oak in opposite ways
Multi-year observations reveal a larger than expected autumn respiration signal across northeast Eurasia
Reviews and syntheses: VOC emissions from soil cover in boreal and temperate natural ecosystems of the Northern Hemisphere
Internal tree cycling and atmospheric archiving of mercury: examination with concentration and stable isotope analyses
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
CO2 and CH4 exchanges between moist moss tundra and atmosphere on Kapp Linné, Svalbard
Recent extreme drought events in the Amazon rainforest: assessment of different precipitation and evapotranspiration datasets and drought indicators
Variability and uncertainty in flux-site-scale net ecosystem exchange simulations based on machine learning and remote sensing: a systematic evaluation
Update of a biogeochemical model with process-based algorithms to predict ammonia volatilization from fertilized cultivated uplands and rice paddy fields
Massive warming-induced carbon loss from subalpine grassland soils in an altitudinal transplantation experiment
Climatic variation drives loss and restructuring of carbon and nitrogen in boreal forest wildfire
Gaps in network infrastructure limit our understanding of biogenic methane emissions for the United States
Changes of the aerodynamic characteristics of a flux site after an extensive windthrow
Carbon sequestration potential of street tree plantings in Helsinki
Technical note: Incorporating expert domain knowledge into causal structure discovery workflows
Sensitivity of biomass burning emissions estimates to land surface information
A convolutional neural network for spatial downscaling of satellite-based solar-induced chlorophyll fluorescence (SIFnet)
Influence of plant ecophysiology on ozone dry deposition: comparing between multiplicative and photosynthesis-based dry deposition schemes and their responses to rising CO2 level
Andrew S. Kowalski
Biogeosciences, 22, 785–789, https://doi.org/10.5194/bg-22-785-2025, https://doi.org/10.5194/bg-22-785-2025, 2025
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The laws of physics show that leaf oxygen is not photosynthetically enriched but extremely dilute due to the overwhelming effects of humidification. This challenges the prevailing diffusion-only paradigm regarding leaf gas exchanges because non-diffusive transport is required. Such transport also explains why fluxes of carbon dioxide and water vapour become decoupled at very high temperatures, as has been observed but not explained by plant physiologists.
Florian Wieland, Nadine Bothen, Ralph Schwidetzky, Teresa M. Seifried, Paul Bieber, Ulrich Pöschl, Konrad Meister, Mischa Bonn, Janine Fröhlich-Nowoisky, and Hinrich Grothe
Biogeosciences, 22, 103–115, https://doi.org/10.5194/bg-22-103-2025, https://doi.org/10.5194/bg-22-103-2025, 2025
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Betula pendula is a widespread birch tree species containing ice nucleation agents that can trigger the freezing of cloud droplets and thereby alter the evolution of clouds. Our study identifies three distinct ice-nucleating macromolecule (INM) aggregates of varying size that can nucleate ice at temperatures up to –5.4°C. Our findings suggest that these vegetation-derived particles may influence atmospheric processes, weather, and climate more strongly than previously thought.
Matthew G. Davis, Kevin Yan, and Jennifer G. Murphy
Biogeosciences, 21, 5381–5392, https://doi.org/10.5194/bg-21-5381-2024, https://doi.org/10.5194/bg-21-5381-2024, 2024
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Ammonia applied as fertilizer can volatilize into the atmosphere. This can threaten vulnerable ecosystems and human health. We investigated the partitioning of ammonia between an immobile adsorbed phase and mobile aqueous phase using several adsorption models. Using the Temkin model we determined that previous approaches to this issue may overestimate the quantity available for exchange by a factor of 5–20, suggesting that ammonia emissions from soil may be overestimated.
Annika Einbock and Franz Conen
Biogeosciences, 21, 5219–5231, https://doi.org/10.5194/bg-21-5219-2024, https://doi.org/10.5194/bg-21-5219-2024, 2024
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A small fraction of particles found at great heights in the atmosphere can freeze cloud droplets at temperatures of ≥ −10 °C and thus influence cloud properties. We provide a novel type of evidence that plant canopies are a major source of such biological ice-nucleating particles in the air above the Alps, potentially affecting mixed-phase cloud development.
Stephen E. Schwartz
Biogeosciences, 21, 5045–5057, https://doi.org/10.5194/bg-21-5045-2024, https://doi.org/10.5194/bg-21-5045-2024, 2024
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Anticorrelation in uptake of atmospheric CO2 following pulse emission or abrupt cessation of emissions is examined in two key model intercomparison studies. In both studies net transfer coefficients from the atmosphere to the world ocean and the terrestrial biosphere are anticorrelated across models, reducing inter-model diversity in decrease of atmospheric CO2 following the perturbation, increasing uncertainties of global warming potentials and consequences of prospective emission reductions.
Rosemary J. Eufemio, Galit Renzer, Mariah Rojas, Jolanta Miadlikowska, Todd L. Sformo, François Lutzoni, Boris A. Vinatzer, and Konrad Meister
EGUsphere, https://doi.org/10.5194/egusphere-2024-2959, https://doi.org/10.5194/egusphere-2024-2959, 2024
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Peltigera lichens, one of the most abundant lichen genera, contain ice nucleators (INs) that enable freezing near 0 °C. Yet the frequency and efficiency of the INs is largely unknown. Our Pan-American screening of Peltigera reveals that the lichen thalli contain potent INs resistant to freeze-thaw cycles. Notably, a pure fungal culture from Peltigera britannica released the most efficient INs reported to date. Our findings emphasize the potential of Peltigera INs to impact atmospheric patterns.
Laura Dénise Nadolski, Tarek Sebastian El Madany, Jacob Allen Nelson, Arnaud Carrara, Gerardo Moreno, Richard K. F. Nair, Yunpeng Luo, Anke Hildebrandt, Victor Rolo, Markus Reichstein, and Sung-Ching Lee
EGUsphere, https://doi.org/10.5194/egusphere-2024-3190, https://doi.org/10.5194/egusphere-2024-3190, 2024
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Semi-arid ecosystems are crucial for Earth's carbon balance and are sensitive to changes in nitrogen (N) and phosphorus (P) levels. Their carbon dynamics are complex and not fully understood. We studied how long-term nutrient changes affect carbon exchange. In summer, N+P changed plant composition and productivity. In transitional seasons, carbon exchange was less weather-dependent with N. Adding N and N+P are increasing carbon exchange variability, driven by grass greenness.
Qian Li, Gil Lerner, Einat Bar, Efraim Lewinsohn, and Eran Tas
Biogeosciences, 21, 4133–4147, https://doi.org/10.5194/bg-21-4133-2024, https://doi.org/10.5194/bg-21-4133-2024, 2024
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Our research indicates that instantaneous changes in meteorological parameters better reflect drought-induced changes in the emission rates of biogenic volatile organic compounds (BVOCs) from natural vegetation than their absolute values. However, following a small amount of irrigation, this trend became more moderate or reversed, accompanied by a dramatic increase in BVOC emission rates. These findings advance our understanding of BVOC emissions under climate change.
Pia Gottschalk, Aram Kalhori, Zhan Li, Christian Wille, and Torsten Sachs
Biogeosciences, 21, 3593–3616, https://doi.org/10.5194/bg-21-3593-2024, https://doi.org/10.5194/bg-21-3593-2024, 2024
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To improve the accuracy of spatial carbon exchange estimates, we evaluated simple linear models for net ecosystem exchange (NEE) and gross primary productivity (GPP) and how they can be used to upscale the CO2 exchange of agricultural fields. The models are solely driven by Sentinel-2-derived vegetation indices (VIs). Evaluations show that different VIs have variable power to estimate NEE and GPP of crops in different years. The overall performance is as good as results from complex crop models.
Liliana Scapucci, Ankit Shekhar, Sergio Aranda-Barranco, Anastasiia Bolshakova, Lukas Hörtnagl, Mana Gharun, and Nina Buchmann
Biogeosciences, 21, 3571–3592, https://doi.org/10.5194/bg-21-3571-2024, https://doi.org/10.5194/bg-21-3571-2024, 2024
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Forests face increased exposure to “compound soil and atmospheric drought” (CSAD) events due to global warming. We examined the impacts and drivers of CO2 fluxes during CSAD events at multiple layers of a deciduous forest over 18 years. Results showed reduced net ecosystem productivity and forest-floor respiration during CSAD events, mainly driven by soil and atmospheric drought. This unpredictability in forest CO2 fluxes jeopardises reforestation projects aimed at mitigating CO2 emissions.
Tamara Emmerichs, Yen-Sen Lu, and Domenico Taraborrelli
Biogeosciences, 21, 3251–3269, https://doi.org/10.5194/bg-21-3251-2024, https://doi.org/10.5194/bg-21-3251-2024, 2024
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We assess the representation of the plant response to surface water in a global atmospheric chemistry model. This sensitivity is crucial for the return of precipitation back into the atmosphere and thus significantly impacts the representation of weather as well as air quality. The newly implemented response function reduces this process and has a better comparison with satellite observations. This yields a higher intensity of unusual warm periods and higher production of air pollutants.
Nina L. H. Kinney, Charles A. Hepburn, Matthew I. Gibson, Daniel Ballesteros, and Thomas F. Whale
Biogeosciences, 21, 3201–3214, https://doi.org/10.5194/bg-21-3201-2024, https://doi.org/10.5194/bg-21-3201-2024, 2024
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Molecules released from plant pollen induce the formation of ice from supercooled water at temperatures warm enough to suggest an underlying function for this activity. In this study we show that ice nucleators are ubiquitous in pollen. We suggest the molecules responsible fulfil some unrelated biological function and nucleate ice incidentally. The ubiquity of ice-nucleating molecules in pollen and particularly active examples reveal a greater potential for pollen to impact weather and climate.
Max Gaber, Yanghui Kang, Guy Schurgers, and Trevor Keenan
Biogeosciences, 21, 2447–2472, https://doi.org/10.5194/bg-21-2447-2024, https://doi.org/10.5194/bg-21-2447-2024, 2024
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Gross primary productivity (GPP) describes the photosynthetic carbon assimilation, which plays a vital role in the carbon cycle. We can measure GPP locally, but producing larger and continuous estimates is challenging. Here, we present an approach to extrapolate GPP to a global scale using satellite imagery and automated machine learning. We benchmark different models and predictor variables and achieve an estimate that can capture 75 % of the variation in GPP.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek Sebastian El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
Biogeosciences, 21, 2051–2085, https://doi.org/10.5194/bg-21-2051-2024, https://doi.org/10.5194/bg-21-2051-2024, 2024
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Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
Luana Krebs, Susanne Burri, Iris Feigenwinter, Mana Gharun, Philip Meier, and Nina Buchmann
Biogeosciences, 21, 2005–2028, https://doi.org/10.5194/bg-21-2005-2024, https://doi.org/10.5194/bg-21-2005-2024, 2024
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This study explores year-round forest-floor greenhouse gas (GHG) fluxes in a Swiss spruce forest. Soil temperature and snow depth affected forest-floor respiration, while CH4 uptake was linked to snow cover. Negligible N2O fluxes were observed. In 2022, a warm year, CO2 emissions notably increased. The study suggests rising forest-floor GHG emissions due to climate change, impacting carbon sink behavior. Thus, for future forest management, continuous year-round GHG flux measurements are crucial.
Archana Dayalu, Marikate Mountain, Bharat Rastogi, John B. Miller, and Luciana Gatti
EGUsphere, https://doi.org/10.5194/egusphere-2024-1082, https://doi.org/10.5194/egusphere-2024-1082, 2024
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The Amazon is facing unprecedented disturbance. Determining trends in Amazonia’s carbon balance and its sensitivity to disturbance requires reliable vegetation models that adequately capture how its ecosystems exchange carbon with the atmosphere. Our work presents novel estimates of vegetation carbon exchange with the atmosphere across the Amazon, estimated using ground- and satellite-based ecosystem measurements. Our model agrees with independent aircraft observations from discrete locations.
Simone Rodrigues, Glauber Cirino, Demerval Moreira, Andrea Pozzer, Rafael Palácios, Sung-Ching Lee, Breno Imbiriba, José Nogueira, Maria Isabel Vitorino, and George Vourlitis
Biogeosciences, 21, 843–868, https://doi.org/10.5194/bg-21-843-2024, https://doi.org/10.5194/bg-21-843-2024, 2024
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The radiative effects of atmospheric particles are still unknown for a wide variety of species and types of vegetation present in Amazonian biomes. We examined the effects of aerosols on solar radiation and their impacts on photosynthesis in an area of semideciduous forest in the southern Amazon Basin. Under highly smoky-sky conditions, our results show substantial photosynthetic interruption (20–70 %), attributed specifically to the decrease in solar radiation and leaf canopy temperature.
Ruben B. Schulte, Jordi Vilà-Guerau de Arellano, Susanna Rutledge-Jonker, Shelley van der Graaf, Jun Zhang, and Margreet C. van Zanten
Biogeosciences, 21, 557–574, https://doi.org/10.5194/bg-21-557-2024, https://doi.org/10.5194/bg-21-557-2024, 2024
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We analyzed measurements with the aim of finding relations between the surface atmosphere exchange of NH3 and the CO2 uptake and transpiration by vegetation. We found a high correlation of daytime NH3 emissions with both latent heat flux and photosynthetically active radiation. Very few simultaneous measurements of NH3, CO2 fluxes and meteorological variables exist at sub-diurnal timescales. This study paves the way to finding more robust relations between the NH3 exchange flux and CO2 uptake.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Carolina Voigt, Nick Rutter, Paul Mann, Jean-Daniel Sylvain, and Alexandre Roy
Biogeosciences, 20, 5087–5108, https://doi.org/10.5194/bg-20-5087-2023, https://doi.org/10.5194/bg-20-5087-2023, 2023
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We present an analysis of soil CO2 emissions in boreal and tundra regions during the non-growing season. We show that when the soil is completely frozen, soil temperature is the main control on CO2 emissions. When the soil is around the freezing point, with a mix of liquid water and ice, the liquid water content is the main control on CO2 emissions. This study highlights that the vegetation–snow–soil interactions must be considered to understand soil CO2 emissions during the non-growing season.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
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Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Joyson Ahongshangbam, Liisa Kulmala, Jesse Soininen, Yasmin Frühauf, Esko Karvinen, Yann Salmon, Anna Lintunen, Anni Karvonen, and Leena Järvi
Biogeosciences, 20, 4455–4475, https://doi.org/10.5194/bg-20-4455-2023, https://doi.org/10.5194/bg-20-4455-2023, 2023
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Urban vegetation is important for removing urban CO2 emissions and cooling. We studied the response of urban trees' functions (photosynthesis and transpiration) to a heatwave and drought at four urban green areas in the city of Helsinki. We found that tree water use was increased during heatwave and drought periods, but there was no change in the photosynthesis rates. The heat and drought conditions were severe at the local scale but were not excessive enough to restrict urban trees' functions.
Ryan Vella, Andrea Pozzer, Matthew Forrest, Jos Lelieveld, Thomas Hickler, and Holger Tost
Biogeosciences, 20, 4391–4412, https://doi.org/10.5194/bg-20-4391-2023, https://doi.org/10.5194/bg-20-4391-2023, 2023
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We investigated the effect of the El Niño–Southern Oscillation (ENSO) on biogenic volatile organic compound (BVOC) emissions from plants. ENSO events can cause a significant increase in these emissions, which have a long-term impact on the Earth's atmosphere. Persistent ENSO conditions can cause long-term changes in vegetation, resulting in even higher BVOC emissions. We link ENSO-induced emission anomalies with driving atmospheric and vegetational variables.
Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
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The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
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Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
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Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
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We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
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This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
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Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
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Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
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Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
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As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
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For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
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We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
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Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
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Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
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Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
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We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
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A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
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The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
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Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
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This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
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To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
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This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
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This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
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We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
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We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
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Short summary
Ecological models often suffer from substantial biases due to inaccurate simulations of complex ecological processes. We introduce a set of scaling factors (parameters) for an ecological model on the basis of plant functional type (PFT) and latitudes. A global carbon assimilation system (GCAS-DOM) is developed by employing a dual optimization method (DOM) to invert the time-dependent ecological model parameter state and the net carbon flux state on 1 degree grid cells simultaneously.
Ecological models often suffer from substantial biases due to inaccurate simulations of complex...
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