Articles | Volume 15, issue 19
https://doi.org/10.5194/bg-15-5929-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-5929-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Reviews and syntheses
| Highlight paper
| 
09 Oct 2018
Reviews and syntheses | Highlight paper |
| 09 Oct 2018
| 09 Oct 2018
Reviews and syntheses: Carbon use efficiency from organisms to ecosystems – definitions, theories, and empirical evidence
Stefano Manzoni
CORRESPONDING AUTHOR
Department of Physical Geography, Stockholm University, Stockholm,
106 91, Sweden
Bolin Centre for Climate Research, Stockholm University, Stockholm,
106 91, Sweden
Petr Čapek
Pacific Northwest National Laboratory, Environmental Molecular
Sciences Laboratory, Richland, WA, USA
Philipp Porada
Plant Ecology and Nature Conservation, University of Potsdam, Potsdam,
Germany
Martin Thurner
Bolin Centre for Climate Research, Stockholm University, Stockholm,
106 91, Sweden
Department of Environmental Science and Analytical Chemistry,
Stockholm University, Stockholm, 106 91, Sweden
Mattias Winterdahl
Department of Earth Sciences, Uppsala University, Uppsala, Sweden
Christian Beer
Bolin Centre for Climate Research, Stockholm University, Stockholm,
106 91, Sweden
Department of Environmental Science and Analytical Chemistry,
Stockholm University, Stockholm, 106 91, Sweden
Volker Brüchert
Department of Geological Sciences, Stockholm University, Stockholm,
106 91, Sweden
Jan Frouz
CUNI Institute for Environmental Studies, Charles University in
Prague, Prague, Czech Republic
Anke M. Herrmann
Department of Soil and Environment, Swedish University of Agricultural
Sciences, Uppsala, 750 07, Sweden
Björn D. Lindahl
Department of Soil and Environment, Swedish University of Agricultural
Sciences, Uppsala, 750 07, Sweden
Steve W. Lyon
Department of Physical Geography, Stockholm University, Stockholm,
106 91, Sweden
Bolin Centre for Climate Research, Stockholm University, Stockholm,
106 91, Sweden
Hana Šantrůčková
Department of Ecosystem Biology, University of South Bohemia,
České Budějovice, Czech Republic
Giulia Vico
Department of Crop Production Ecology, Swedish University of
Agricultural Sciences, Uppsala, 750 07, Sweden
Danielle Way
Department of Biology, University of Western Ontario, London, Canada
Nicholas School of the Environment, Duke University, Durham, NC, USA
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Boris Ťupek, Aleksi Lehtonen, Stefano Manzoni, Elisa Bruni, Petr Baldrian, Etienne Richy, Bartosz Adamczyk, Bertrand Guenet, and Raisa Mäkipää
EGUsphere, https://doi.org/10.5194/egusphere-2024-3813, https://doi.org/10.5194/egusphere-2024-3813, 2024
This preprint is open for discussion and under review for Biogeosciences (BG).
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We explored soil microbial respiration (Rh) kinetics of low-dose and long-term N fertilization in N-limited boreal forest in connection to CH₄, and N₂O fluxes, soil, and tree C sinks. The insights show that N fertilization effects C retention in boreal forest soils through modifying Rh sensitivities to soil temperature and moisture. The key findings reveal that N-enriched soils exhibited reduced sensitivity of Rh to moisture, which on annual level contributes to enhanced soil C sequestration.
Xiankun Li, Marleen Pallandt, Dilip Naidu, Johannes Rousk, Gustaf Hugelius, and Stefano Manzoni
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While laboratory studies have identified many drivers and their effects on the carbon emission pulse after rewetting of dry soils, a validation with field data is still missing. Here, we show that the carbon emission pulse in the laboratory and in the field increases with soil organic carbon and temperature, but their trends with pre-rewetting dryness and moisture increment at rewetting differ. We conclude that the laboratory findings can be partially validated.
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We studied carbon dynamics in afforested, drained peatlands using the ForSAFE-Peat model over two forest rotations. Our simulations showed that while trees store carbon, significant soil carbon losses occur, particularly early on, indicating that forest growth may not fully offset these losses once carbon time dynamics are considered. This emphasizes the need to consider both soil and harvested wood products when evaluating the climate impact of such systems.
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Organic carbon and nitrogen are stabilized in soils via microbial assimilation and stabilization of necromass (in vivo pathway) or via adsorption of the products of extracellular decomposition (ex vivo pathway). Here we use a diagnostic model to quantify which stabilization pathway is prevalent using data on residue-derived carbon and nitrogen incorporation in mineral-associated organic matter. We find that the in vivo pathway is dominant in fine-textured soils with low organic matter content.
Erik Schwarz, Samia Ghersheen, Salim Belyazid, and Stefano Manzoni
Biogeosciences, 21, 3441–3461, https://doi.org/10.5194/bg-21-3441-2024, https://doi.org/10.5194/bg-21-3441-2024, 2024
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The occurrence of unstable equilibrium points (EPs) could impede the applicability of microbial-explicit soil organic carbon models. For archetypal model versions we identify when instability can occur and describe mathematical conditions to avoid such unstable EPs. We discuss implications for further model development, highlighting the important role of considering basic ecological principles to ensure biologically meaningful models.
Martin Thurner, Kailiang Yu, Stefano Manzoni, Anatoly Prokushkin, Melanie A. Thurner, Zhiqiang Wang, and Thomas Hickler
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Nitrogen concentrations in tree tissues (leaves, branches, stems, and roots) control photosynthesis, growth and respiration, and thus influence vegetation carbon uptake. Our novel database allows us to identify the controls of tree tissue nitrogen concentrations in boreal and temperate forests, such as tree age/size, species and climate. Changes therein will affect tissue N concentrations and thus also vegetation carbon uptake.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
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Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
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EGUsphere, https://doi.org/10.5194/egusphere-2023-2673, https://doi.org/10.5194/egusphere-2023-2673, 2023
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This study assesses the effects of experimental drought and of a soil amendment on soil and vegetation carbon pools, at different soil depths. Drought consistently reduced soil moisture and aboveground biomass, while compost increased total soil carbon content and aboveground biomass, and effects were more pronounced in the topsoil. Root biomass was not significantly affected by the treatments. The contrasting response of roots and shoots improves our understanding of ecosystem carbon dynamics.
Stefano Manzoni, Simone Fatichi, Xue Feng, Gabriel G. Katul, Danielle Way, and Giulia Vico
Biogeosciences, 19, 4387–4414, https://doi.org/10.5194/bg-19-4387-2022, https://doi.org/10.5194/bg-19-4387-2022, 2022
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Increasing atmospheric carbon dioxide (CO2) causes leaves to close their stomata (through which water evaporates) but also promotes leaf growth. Even if individual leaves save water, how much will be consumed by a whole plant with possibly more leaves? Using different mathematical models, we show that plant stands that are not very dense and can grow more leaves will benefit from higher CO2 by photosynthesizing more while adjusting their stomata to consume similar amounts of water.
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Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2020-404, https://doi.org/10.5194/hess-2020-404, 2020
Preprint withdrawn
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We investigated in an upland rice experiment in Costa Rica whether mixing biochar (a charcoal) in soils could increase the resilience of rainfed agriculture to climate variability. We found that rice plants with biochar had access to larger stores of water more consistently and thus could withstand seven extra dry days relative to rice grown in non-treated soils. However, biochar can complement, but not necessarily replace, other water management strategies.
Stefano Manzoni, Arjun Chakrawal, Thomas Fischer, Joshua P. Schimel, Amilcare Porporato, and Giulia Vico
Biogeosciences, 17, 4007–4023, https://doi.org/10.5194/bg-17-4007-2020, https://doi.org/10.5194/bg-17-4007-2020, 2020
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Carbon dioxide is produced by soil microbes through respiration, which is particularly fast when soils are moistened by rain. Will respiration increase with future more intense rains and longer dry spells? With a mathematical model, we show that wetter conditions increase respiration. In contrast, if rainfall totals stay the same, but rain comes all at once after long dry spells, the average respiration will not change, but the contribution of the respiration bursts after rain will increase.
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Carbon use efficiency (CUE) of decomposers depends strongly on the organic matter quality (C : N ratio) and soil nutrient availability rather than a fixed value. A soil biogeochemical model with flexible CUE can better capture the differences in respiration rate of litter with contrasting C : N ratios and under different levels of mineral N availability than the model with fixed CUE, and well represent the effect of varying litter quality (N content) on SOM formation across temporal scales.
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Amazonia is highly biodiverse and of global importance for regulating the climate system. Because soils are highly weathered, phosphorus (P) is suggested to limit ecosystem productivity. Here, we evaluate the importance of P redistribution by animals using a simple mathematical model synthesizing the major processes of the Amazon P cycle. Our findings suggest that food web complexity plays an important role for sustaining the productivity of terra firme forests.
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This preprint is open for discussion and under review for SOIL (SOIL).
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Simulation models can be used to evaluate changes in soil organic carbon (SOC) stocks in agricultural soils that are important to soil health and climate change mitigation. We describe a simple model that considers SOC turnover in a soil profile regulated by two processes: physical protection due to aggregation and microbial energy limitation. It accurately reproduces trends in SOC in plots receiving different OC inputs and matches survey data on SOC in the soil profile in one region of Sweden.
Boris Ťupek, Aleksi Lehtonen, Stefano Manzoni, Elisa Bruni, Petr Baldrian, Etienne Richy, Bartosz Adamczyk, Bertrand Guenet, and Raisa Mäkipää
EGUsphere, https://doi.org/10.5194/egusphere-2024-3813, https://doi.org/10.5194/egusphere-2024-3813, 2024
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
We explored soil microbial respiration (Rh) kinetics of low-dose and long-term N fertilization in N-limited boreal forest in connection to CH₄, and N₂O fluxes, soil, and tree C sinks. The insights show that N fertilization effects C retention in boreal forest soils through modifying Rh sensitivities to soil temperature and moisture. The key findings reveal that N-enriched soils exhibited reduced sensitivity of Rh to moisture, which on annual level contributes to enhanced soil C sequestration.
Xiankun Li, Marleen Pallandt, Dilip Naidu, Johannes Rousk, Gustaf Hugelius, and Stefano Manzoni
EGUsphere, https://doi.org/10.5194/egusphere-2024-3324, https://doi.org/10.5194/egusphere-2024-3324, 2024
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While laboratory studies have identified many drivers and their effects on the carbon emission pulse after rewetting of dry soils, a validation with field data is still missing. Here, we show that the carbon emission pulse in the laboratory and in the field increases with soil organic carbon and temperature, but their trends with pre-rewetting dryness and moisture increment at rewetting differ. We conclude that the laboratory findings can be partially validated.
Daniel Escobar, Stefano Manzoni, Jeimar Tapasco, and Salim Belyazid
EGUsphere, https://doi.org/10.5194/egusphere-2024-2754, https://doi.org/10.5194/egusphere-2024-2754, 2024
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We studied carbon dynamics in afforested, drained peatlands using the ForSAFE-Peat model over two forest rotations. Our simulations showed that while trees store carbon, significant soil carbon losses occur, particularly early on, indicating that forest growth may not fully offset these losses once carbon time dynamics are considered. This emphasizes the need to consider both soil and harvested wood products when evaluating the climate impact of such systems.
Anne F. Van Loon, Sarra Kchouk, Alessia Matanó, Faranak Tootoonchi, Camila Alvarez-Garreton, Khalid E. A. Hassaballah, Minchao Wu, Marthe L. K. Wens, Anastasiya Shyrokaya, Elena Ridolfi, Riccardo Biella, Viorica Nagavciuc, Marlies H. Barendrecht, Ana Bastos, Louise Cavalcante, Franciska T. de Vries, Margaret Garcia, Johanna Mård, Ileen N. Streefkerk, Claudia Teutschbein, Roshanak Tootoonchi, Ruben Weesie, Valentin Aich, Juan P. Boisier, Giuliano Di Baldassarre, Yiheng Du, Mauricio Galleguillos, René Garreaud, Monica Ionita, Sina Khatami, Johanna K. L. Koehler, Charles H. Luce, Shreedhar Maskey, Heidi D. Mendoza, Moses N. Mwangi, Ilias G. Pechlivanidis, Germano G. Ribeiro Neto, Tirthankar Roy, Robert Stefanski, Patricia Trambauer, Elizabeth A. Koebele, Giulia Vico, and Micha Werner
Nat. Hazards Earth Syst. Sci., 24, 3173–3205, https://doi.org/10.5194/nhess-24-3173-2024, https://doi.org/10.5194/nhess-24-3173-2024, 2024
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Drought is a creeping phenomenon but is often still analysed and managed like an isolated event, without taking into account what happened before and after. Here, we review the literature and analyse five cases to discuss how droughts and their impacts develop over time. We find that the responses of hydrological, ecological, and social systems can be classified into four types and that the systems interact. We provide suggestions for further research and monitoring, modelling, and management.
Stefano Manzoni and M. Francesca Cotrufo
Biogeosciences, 21, 4077–4098, https://doi.org/10.5194/bg-21-4077-2024, https://doi.org/10.5194/bg-21-4077-2024, 2024
Short summary
Short summary
Organic carbon and nitrogen are stabilized in soils via microbial assimilation and stabilization of necromass (in vivo pathway) or via adsorption of the products of extracellular decomposition (ex vivo pathway). Here we use a diagnostic model to quantify which stabilization pathway is prevalent using data on residue-derived carbon and nitrogen incorporation in mineral-associated organic matter. We find that the in vivo pathway is dominant in fine-textured soils with low organic matter content.
Erik Schwarz, Samia Ghersheen, Salim Belyazid, and Stefano Manzoni
Biogeosciences, 21, 3441–3461, https://doi.org/10.5194/bg-21-3441-2024, https://doi.org/10.5194/bg-21-3441-2024, 2024
Short summary
Short summary
The occurrence of unstable equilibrium points (EPs) could impede the applicability of microbial-explicit soil organic carbon models. For archetypal model versions we identify when instability can occur and describe mathematical conditions to avoid such unstable EPs. We discuss implications for further model development, highlighting the important role of considering basic ecological principles to ensure biologically meaningful models.
Martin Thurner, Kailiang Yu, Stefano Manzoni, Anatoly Prokushkin, Melanie A. Thurner, Zhiqiang Wang, and Thomas Hickler
EGUsphere, https://doi.org/10.5194/egusphere-2024-1794, https://doi.org/10.5194/egusphere-2024-1794, 2024
Short summary
Short summary
Nitrogen concentrations in tree tissues (leaves, branches, stems, and roots) control photosynthesis, growth and respiration, and thus influence vegetation carbon uptake. Our novel database allows us to identify the controls of tree tissue nitrogen concentrations in boreal and temperate forests, such as tree age/size, species and climate. Changes therein will affect tissue N concentrations and thus also vegetation carbon uptake.
Boris Ťupek, Aleksi Lehtonen, Alla Yurova, Rose Abramoff, Bertrand Guenet, Elisa Bruni, Samuli Launiainen, Mikko Peltoniemi, Shoji Hashimoto, Xianglin Tian, Juha Heikkinen, Kari Minkkinen, and Raisa Mäkipää
Geosci. Model Dev., 17, 5349–5367, https://doi.org/10.5194/gmd-17-5349-2024, https://doi.org/10.5194/gmd-17-5349-2024, 2024
Short summary
Short summary
Updating the Yasso07 soil C model's dependency on decomposition with a hump-shaped Ricker moisture function improved modelled soil organic C (SOC) stocks in a catena of mineral and organic soils in boreal forest. The Ricker function, set to peak at a rate of 1 and calibrated against SOC and CO2 data using a Bayesian approach, showed a maximum in well-drained soils. Using SOC and CO2 data together with the moisture only from the topsoil humus was crucial for accurate model estimates.
Youssef Saadaoui, Christian Beer, Peter Mueller, Friederike Neiske, Joscha N. Becker, Annette Eschenbach, and Philipp Porada
EGUsphere, https://doi.org/10.5194/egusphere-2024-1756, https://doi.org/10.5194/egusphere-2024-1756, 2024
This preprint is open for discussion and under review for Biogeosciences (BG).
Short summary
Short summary
Estuarine marshes are vital for capturing carbon and benefiting the climate. Our research explored how plant-microbe interactions affect carbon cycling, focusing on traits like root oxygen loss. Using a model, we found that accounting for these trait variations significantly changes carbon balance estimates. This suggests that including plant diversity in ecosystem models improves predictions about carbon dynamics in estuarine marshes, highlighting their importance in climate regulation.
Christian Beer
EGUsphere, https://doi.org/10.5194/egusphere-2024-1504, https://doi.org/10.5194/egusphere-2024-1504, 2024
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Fauna and flora respires carbon dioxide into the atmosphere, which is a major carbon flux into the atmosphere. The underlying biochemical processes are complex, and we generalize them either assuming a first order chemical reaction of carbon and oxygen to carbon dioxide, or assuming enzymatic reactions. Here, we show that these assumptions lead to large differences in estimating the carbon-climate feedback until 2100 and the remaining carbon budget to keep warming below 2 degrees C.
John Prytherch, Sonja Murto, Ian Brown, Adam Ulfsbo, Brett F. Thornton, Volker Brüchert, Michael Tjernström, Anna Lunde Hermansson, Amanda T. Nylund, and Lina A. Holthusen
Biogeosciences, 21, 671–688, https://doi.org/10.5194/bg-21-671-2024, https://doi.org/10.5194/bg-21-671-2024, 2024
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Short summary
We directly measured methane and carbon dioxide exchange between ocean or sea ice and the atmosphere during an icebreaker-based expedition to the central Arctic Ocean (CAO) in summer 2021. These measurements can help constrain climate models and carbon budgets. The methane measurements, the first such made in the CAO, are lower than previous estimates and imply that the CAO is an insignificant contributor to Arctic methane emission. Gas exchange rates are slower than previous estimates.
Daniela Guasconi, Sara Cousins, Stefano Manzoni, Nina Roth, and Gustaf Hugelius
EGUsphere, https://doi.org/10.5194/egusphere-2023-2673, https://doi.org/10.5194/egusphere-2023-2673, 2023
Short summary
Short summary
This study assesses the effects of experimental drought and of a soil amendment on soil and vegetation carbon pools, at different soil depths. Drought consistently reduced soil moisture and aboveground biomass, while compost increased total soil carbon content and aboveground biomass, and effects were more pronounced in the topsoil. Root biomass was not significantly affected by the treatments. The contrasting response of roots and shoots improves our understanding of ecosystem carbon dynamics.
Yunyao Ma, Bettina Weber, Alexandra Kratz, José Raggio, Claudia Colesie, Maik Veste, Maaike Y. Bader, and Philipp Porada
Biogeosciences, 20, 2553–2572, https://doi.org/10.5194/bg-20-2553-2023, https://doi.org/10.5194/bg-20-2553-2023, 2023
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We found that the modelled annual carbon balance of biocrusts is strongly affected by both the environment (mostly air temperature and CO2 concentration) and physiology, such as temperature response of respiration. However, the relative impacts of these drivers vary across regions with different climates. Uncertainty in driving factors may lead to unrealistic carbon balance estimates, particularly in temperate climates, and may be explained by seasonal variation of physiology due to acclimation.
Stefano Manzoni, Simone Fatichi, Xue Feng, Gabriel G. Katul, Danielle Way, and Giulia Vico
Biogeosciences, 19, 4387–4414, https://doi.org/10.5194/bg-19-4387-2022, https://doi.org/10.5194/bg-19-4387-2022, 2022
Short summary
Short summary
Increasing atmospheric carbon dioxide (CO2) causes leaves to close their stomata (through which water evaporates) but also promotes leaf growth. Even if individual leaves save water, how much will be consumed by a whole plant with possibly more leaves? Using different mathematical models, we show that plant stands that are not very dense and can grow more leaves will benefit from higher CO2 by photosynthesizing more while adjusting their stomata to consume similar amounts of water.
Suman Halder, Susanne K. M. Arens, Kai Jensen, Tais W. Dahl, and Philipp Porada
Geosci. Model Dev., 15, 2325–2343, https://doi.org/10.5194/gmd-15-2325-2022, https://doi.org/10.5194/gmd-15-2325-2022, 2022
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A dynamic vegetation model, designed to estimate potential impacts of early vascular vegetation, namely, lycopsids, on the biogeochemical cycle at a local scale. Lycopsid Model (LYCOm) estimates the productivity and physiological properties of lycopsids across a broad climatic range along with natural selection, which is then utilized to adjudge their weathering potential. It lays the foundation for estimation of their impacts during their long evolutionary history starting from the Ordovician.
Xiangyu Luan and Giulia Vico
Hydrol. Earth Syst. Sci., 25, 1411–1423, https://doi.org/10.5194/hess-25-1411-2021, https://doi.org/10.5194/hess-25-1411-2021, 2021
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Crop yield is reduced by heat and water stress, particularly when they co-occur. We quantify the joint effects of (unpredictable) air temperature and soil water availability on crop heat stress via a mechanistic model. Larger but more infrequent precipitation increased crop canopy temperatures. Keeping crops well watered via irrigation could reduce canopy temperature but not enough to always exclude heat damage. Thus, irrigation is only a partial solution to adapt to warmer and drier climates.
Katharina Hildegard Elisabeth Meurer, Claire Chenu, Elsa Coucheney, Anke Marianne Herrmann, Thomas Keller, Thomas Kätterer, David Nimblad Svensson, and Nicholas Jarvis
Biogeosciences, 17, 5025–5042, https://doi.org/10.5194/bg-17-5025-2020, https://doi.org/10.5194/bg-17-5025-2020, 2020
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We present a simple model that describes, for the first time, the dynamic two-way interactions between soil organic matter and soil physical properties (porosity, pore size distribution, bulk density and layer thickness). The model was able to accurately reproduce the changes in soil organic carbon, soil bulk density and surface elevation observed during 63 years in a field trial, as well as soil water retention curves measured at the end of the experimental period.
Naixin Fan, Sujan Koirala, Markus Reichstein, Martin Thurner, Valerio Avitabile, Maurizio Santoro, Bernhard Ahrens, Ulrich Weber, and Nuno Carvalhais
Earth Syst. Sci. Data, 12, 2517–2536, https://doi.org/10.5194/essd-12-2517-2020, https://doi.org/10.5194/essd-12-2517-2020, 2020
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The turnover time of terrestrial carbon (τ) controls the global carbon cycle–climate feedback. In this study, we provide a new, updated ensemble of diagnostic terrestrial carbon turnover times and associated uncertainties on a global scale. Despite the large variation in both magnitude and spatial patterns of τ, we identified robust features in the spatial patterns of τ which could contribute to uncertainty reductions in future projections of the carbon cycle–climate feedback.
Benjamin M. C. Fischer, Laura Morillas, Johanna Rojas Conejo, Ricardo Sánchez-Murillo, Andrea Suárez Serrano, Jay Frentress, Chih-Hsin Cheng, Monica Garcia, Stefano Manzoni, Mark S. Johnson, and Steve W. Lyon
Hydrol. Earth Syst. Sci. Discuss., https://doi.org/10.5194/hess-2020-404, https://doi.org/10.5194/hess-2020-404, 2020
Preprint withdrawn
Short summary
Short summary
We investigated in an upland rice experiment in Costa Rica whether mixing biochar (a charcoal) in soils could increase the resilience of rainfed agriculture to climate variability. We found that rice plants with biochar had access to larger stores of water more consistently and thus could withstand seven extra dry days relative to rice grown in non-treated soils. However, biochar can complement, but not necessarily replace, other water management strategies.
Stefano Manzoni, Arjun Chakrawal, Thomas Fischer, Joshua P. Schimel, Amilcare Porporato, and Giulia Vico
Biogeosciences, 17, 4007–4023, https://doi.org/10.5194/bg-17-4007-2020, https://doi.org/10.5194/bg-17-4007-2020, 2020
Short summary
Short summary
Carbon dioxide is produced by soil microbes through respiration, which is particularly fast when soils are moistened by rain. Will respiration increase with future more intense rains and longer dry spells? With a mathematical model, we show that wetter conditions increase respiration. In contrast, if rainfall totals stay the same, but rain comes all at once after long dry spells, the average respiration will not change, but the contribution of the respiration bursts after rain will increase.
Félix Pellerin, Philipp Porada, and Inga Hense
Earth Syst. Dynam. Discuss., https://doi.org/10.5194/esd-2020-55, https://doi.org/10.5194/esd-2020-55, 2020
Revised manuscript not accepted
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While several biological processes are similar among terrestrial and marine ecosystems, their representation in Earth System Models may differ. By comparing the terrestrial and marine modules of 17 Earth System Models, we found multiple evidences of unjustified differences in processes representation. These inconsistencies may lead to wrong predictions about the role of biosphere in the climate system and skew our perception of the relative influence of each ecosystem on climate.
Stefano Manzoni, Giorgos Maneas, Anna Scaini, Basil E. Psiloglou, Georgia Destouni, and Steve W. Lyon
Hydrol. Earth Syst. Sci., 24, 3557–3571, https://doi.org/10.5194/hess-24-3557-2020, https://doi.org/10.5194/hess-24-3557-2020, 2020
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A modeling tool is developed to assess the vulnerability of coastal wetlands to climatic and water management changes. Applied to the case study of the Gialova lagoon (Greece), this tool highlights the reliance of the lagoon functionality on scarce freshwater sources already under high demand from agriculture. Climatic changes will likely increase lagoon salinity, despite efforts to improve water management.
Marcus B. Wallin, Joachim Audet, Mike Peacock, Erik Sahlée, and Mattias Winterdahl
Biogeosciences, 17, 2487–2498, https://doi.org/10.5194/bg-17-2487-2020, https://doi.org/10.5194/bg-17-2487-2020, 2020
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Here we show that small streams draining agricultural areas are potential hotspots for emissions of CO2 to the atmosphere. We further conclude that the variability in stream CO2 concentration over time is very high, caused by variations in both water discharge and primary production. Given the observed high levels of CO2 and its temporally variable nature, agricultural streams clearly need more attention in order to understand and incorporate these dynamics in large-scale extrapolations.
Arjun Chakrawal, Anke M. Herrmann, John Koestel, Jerker Jarsjö, Naoise Nunan, Thomas Kätterer, and Stefano Manzoni
Geosci. Model Dev., 13, 1399–1429, https://doi.org/10.5194/gmd-13-1399-2020, https://doi.org/10.5194/gmd-13-1399-2020, 2020
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Soils are heterogeneous, which results in a nonuniform spatial distribution of substrates and the microorganisms feeding on them. Our results show that the variability in the spatial distribution of substrates and microorganisms at the pore scale is crucial because it affects how fast substrates are used by microorganisms and thus the decomposition rate observed at the soil core scale. This work provides a methodology to include microscale heterogeneity in soil carbon cycling models.
Peter Kuhry, Jiří Bárta, Daan Blok, Bo Elberling, Samuel Faucherre, Gustaf Hugelius, Christian J. Jørgensen, Andreas Richter, Hana Šantrůčková, and Niels Weiss
Biogeosciences, 17, 361–379, https://doi.org/10.5194/bg-17-361-2020, https://doi.org/10.5194/bg-17-361-2020, 2020
Christian Stranne, Matt O'Regan, Martin Jakobsson, Volker Brüchert, and Marcelo Ketzer
Solid Earth, 10, 1541–1554, https://doi.org/10.5194/se-10-1541-2019, https://doi.org/10.5194/se-10-1541-2019, 2019
Arvid Bring and Steve W. Lyon
Hydrol. Earth Syst. Sci., 23, 2369–2378, https://doi.org/10.5194/hess-23-2369-2019, https://doi.org/10.5194/hess-23-2369-2019, 2019
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Hydrology education strives to teach students both quantitative ability and complex professional skills. Our research shows that role-play simulations are useful to make students able to integrate various analytical skills in complicated settings while not interfering with traditional teaching that fosters their ability to solve mathematical problems. Despite this there are several potential challenging areas in using role-plays, and we therefore suggest ways around these potential roadblocks.
Philipp Porada, Alexandra Tamm, Jose Raggio, Yafang Cheng, Axel Kleidon, Ulrich Pöschl, and Bettina Weber
Biogeosciences, 16, 2003–2031, https://doi.org/10.5194/bg-16-2003-2019, https://doi.org/10.5194/bg-16-2003-2019, 2019
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The trace gases NO and HONO are crucial for atmospheric chemistry. It has been suggested that biological soil crusts in drylands contribute substantially to global NO and HONO emissions, based on empirical upscaling of laboratory and field observations. Here we apply an alternative, process-based modeling approach to predict these emissions. We find that biological soil crusts emit globally significant amounts of NO and HONO, which also vary depending on the type of biological soil crust.
Thomas Schneider von Deimling, Thomas Kleinen, Gustaf Hugelius, Christian Knoblauch, Christian Beer, and Victor Brovkin
Clim. Past, 14, 2011–2036, https://doi.org/10.5194/cp-14-2011-2018, https://doi.org/10.5194/cp-14-2011-2018, 2018
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Past cold ice age temperatures and the subsequent warming towards the Holocene had large consequences for soil organic carbon (SOC) stored in perennially frozen grounds. Using an Earth system model we show how the spread in areas affected by permafrost have changed under deglacial warming, along with changes in SOC accumulation. Our model simulations suggest phases of circum-Arctic permafrost SOC gain and losses, with a net increase in SOC between the last glacial maximum and the pre-industrial.
Haicheng Zhang, Daniel S. Goll, Stefano Manzoni, Philippe Ciais, Bertrand Guenet, and Yuanyuan Huang
Geosci. Model Dev., 11, 4779–4796, https://doi.org/10.5194/gmd-11-4779-2018, https://doi.org/10.5194/gmd-11-4779-2018, 2018
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Carbon use efficiency (CUE) of decomposers depends strongly on the organic matter quality (C : N ratio) and soil nutrient availability rather than a fixed value. A soil biogeochemical model with flexible CUE can better capture the differences in respiration rate of litter with contrasting C : N ratios and under different levels of mineral N availability than the model with fixed CUE, and well represent the effect of varying litter quality (N content) on SOM formation across temporal scales.
Karel Castro-Morales, Thomas Kleinen, Sonja Kaiser, Sönke Zaehle, Fanny Kittler, Min Jung Kwon, Christian Beer, and Mathias Göckede
Biogeosciences, 15, 2691–2722, https://doi.org/10.5194/bg-15-2691-2018, https://doi.org/10.5194/bg-15-2691-2018, 2018
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We present year-round methane emissions from wetlands in Northeast Siberia that were simulated with a land surface model. Ground-based flux measurements from the same area were used for evaluation of the model results, finding a best agreement with the observations in the summertime emissions that take place in this region predominantly through plants. During winter, methane emissions through the snow contribute 4 % of the total annual methane budget, but these are still underestimated.
Petr Kotas, Hana Šantrůčková, Josef Elster, and Eva Kaštovská
Biogeosciences, 15, 1879–1894, https://doi.org/10.5194/bg-15-1879-2018, https://doi.org/10.5194/bg-15-1879-2018, 2018
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The soil microbial properties were investigated along altitudinal gradients in the Arctic. Systematic altitudinal shift in MCS resulting in high F / B ratios at the most elevated sites was observed. The changes in composition, size and activity of microbial communities were mainly controlled through the effect of vegetation on edaphic properties and by bedrock chemistry. The upward migration of vegetation due to global warming will likely diminish the spatial variability in microbial properties.
Christian Beer, Philipp Porada, Altug Ekici, and Matthias Brakebusch
The Cryosphere, 12, 741–757, https://doi.org/10.5194/tc-12-741-2018, https://doi.org/10.5194/tc-12-741-2018, 2018
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Idealized model experiments demonstrate that, in addition to a gradual climate change, changing daily to weekly variability of meteorological variables and extreme events will also have an impact on mean annual ground temperature in high-latitude permafrost areas. In fact, results of the land surface model experiments show that the projected increase of variability of meteorological variables leads to cooler permafrost soil in contrast to an otherwise soil warming in response to climate change.
Volker Brüchert, Lisa Bröder, Joanna E. Sawicka, Tommaso Tesi, Samantha P. Joye, Xiaole Sun, Igor P. Semiletov, and Vladimir A. Samarkin
Biogeosciences, 15, 471–490, https://doi.org/10.5194/bg-15-471-2018, https://doi.org/10.5194/bg-15-471-2018, 2018
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We determined the aerobic and anaerobic degradation rates of land- and marine-derived organic material in East Siberian shelf sediment. Marine plankton-derived organic carbon was the main source for the oxic dissolved carbon dioxide production, whereas terrestrial organic material significantly contributed to the production of carbon dioxide under anoxic conditions. Our direct degradation rate measurements provide new constraints for the present-day Arctic marine carbon budget.
Corina Buendía, Axel Kleidon, Stefano Manzoni, Björn Reu, and Amilcare Porporato
Biogeosciences, 15, 279–295, https://doi.org/10.5194/bg-15-279-2018, https://doi.org/10.5194/bg-15-279-2018, 2018
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Amazonia is highly biodiverse and of global importance for regulating the climate system. Because soils are highly weathered, phosphorus (P) is suggested to limit ecosystem productivity. Here, we evaluate the importance of P redistribution by animals using a simple mathematical model synthesizing the major processes of the Amazon P cycle. Our findings suggest that food web complexity plays an important role for sustaining the productivity of terra firme forests.
Sarah E. Chadburn, Gerhard Krinner, Philipp Porada, Annett Bartsch, Christian Beer, Luca Belelli Marchesini, Julia Boike, Altug Ekici, Bo Elberling, Thomas Friborg, Gustaf Hugelius, Margareta Johansson, Peter Kuhry, Lars Kutzbach, Moritz Langer, Magnus Lund, Frans-Jan W. Parmentier, Shushi Peng, Ko Van Huissteden, Tao Wang, Sebastian Westermann, Dan Zhu, and Eleanor J. Burke
Biogeosciences, 14, 5143–5169, https://doi.org/10.5194/bg-14-5143-2017, https://doi.org/10.5194/bg-14-5143-2017, 2017
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Earth system models (ESMs) are our main tools for understanding future climate. The Arctic is important for the future carbon cycle, particularly due to the large carbon stocks in permafrost. We evaluated the performance of the land component of three major ESMs at Arctic tundra sites, focusing on the fluxes and stocks of carbon.
We show that the next steps for model improvement are to better represent vegetation dynamics, to include mosses and to improve below-ground carbon cycle processes.
Wei Li, Philippe Ciais, Shushi Peng, Chao Yue, Yilong Wang, Martin Thurner, Sassan S. Saatchi, Almut Arneth, Valerio Avitabile, Nuno Carvalhais, Anna B. Harper, Etsushi Kato, Charles Koven, Yi Y. Liu, Julia E.M.S. Nabel, Yude Pan, Julia Pongratz, Benjamin Poulter, Thomas A. M. Pugh, Maurizio Santoro, Stephen Sitch, Benjamin D. Stocker, Nicolas Viovy, Andy Wiltshire, Rasoul Yousefpour, and Sönke Zaehle
Biogeosciences, 14, 5053–5067, https://doi.org/10.5194/bg-14-5053-2017, https://doi.org/10.5194/bg-14-5053-2017, 2017
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We used several observation-based biomass datasets to constrain the historical land-use change carbon emissions simulated by models. Compared to the range of the original modeled emissions (from 94 to 273 Pg C), the observationally constrained global cumulative emission estimate is 155 ± 50 Pg C (1σ Gaussian error) from 1901 to 2012. Our approach can also be applied to evaluate the LULCC impact of land-based climate mitigation policies.
Philipp Porada, Ulrich Pöschl, Axel Kleidon, Christian Beer, and Bettina Weber
Biogeosciences, 14, 1593–1602, https://doi.org/10.5194/bg-14-1593-2017, https://doi.org/10.5194/bg-14-1593-2017, 2017
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Lichens and bryophytes have been shown to release nitrous oxide, which is a strong greenhouse gas and atmospheric ozone-depleting agent. Here we apply a process-based computer model of lichens and bryophytes at the global scale, to estimate growth and respiration of the organisms. By relating respiration to nitrous oxide release, we simulate global nitrous oxide emissions of 0.27 (0.19–0.35) Tg yr−1. Moreover, we quantify different sources of uncertainty in nitrous oxide emission rates.
Sonja Kaiser, Mathias Göckede, Karel Castro-Morales, Christian Knoblauch, Altug Ekici, Thomas Kleinen, Sebastian Zubrzycki, Torsten Sachs, Christian Wille, and Christian Beer
Geosci. Model Dev., 10, 333–358, https://doi.org/10.5194/gmd-10-333-2017, https://doi.org/10.5194/gmd-10-333-2017, 2017
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A new consistent, process-based methane module that is integrated with permafrost processes is presented. It was developed within a global land surface scheme and evaluated at a polygonal tundra site in Samoylov, Russia. The calculated methane emissions show fair agreement with field data and capture detailed differences between the explicitly modelled gas transport processes and in the gas dynamics under varying soil water and temperature conditions during seasons and on different microsites.
Joanna E. Sawicka and Volker Brüchert
Biogeosciences, 14, 325–339, https://doi.org/10.5194/bg-14-325-2017, https://doi.org/10.5194/bg-14-325-2017, 2017
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The biogeochemistry of methane was studied in high-latitude fjord-type estuarine sediment in the Baltic Sea from April 2012 to April 2013. A large variability in methane-producing and methane-oxidizing processes was observed over the year. Oxygen was the most important regulator for the methane flux. In addition to eutrophication effects, free gas movement is suggested as a factor controlling methane concentrations.
Stefano Bonaglia, Astrid Hylén, Jayne E. Rattray, Mikhail Y. Kononets, Nils Ekeroth, Per Roos, Bo Thamdrup, Volker Brüchert, and Per O. J. Hall
Biogeosciences, 14, 285–300, https://doi.org/10.5194/bg-14-285-2017, https://doi.org/10.5194/bg-14-285-2017, 2017
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Understanding nitrogen (N) cycling mechanisms in the ocean is crucial for improving ecosystem management. Here we study N processes by in situ lander and isotope tracer techniques in – so far overlooked – sediments with low organic loads. Denitrification and anammox are the main N transformation processes. However, we demonstrate high contribution of dissimilatory nitrate reduction to ammonium, which recycles a major portion of fixed N to the water column and sustains primary production.
Juliane Filser, Jack H. Faber, Alexei V. Tiunov, Lijbert Brussaard, Jan Frouz, Gerlinde De Deyn, Alexei V. Uvarov, Matty P. Berg, Patrick Lavelle, Michel Loreau, Diana H. Wall, Pascal Querner, Herman Eijsackers, and Juan José Jiménez
SOIL, 2, 565–582, https://doi.org/10.5194/soil-2-565-2016, https://doi.org/10.5194/soil-2-565-2016, 2016
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Soils store more than 3 times as much carbon than the atmosphere, but global carbon models still suffer from large uncertainty. We argue that this may be due to the fact that soil animals are not taken into account in such models. They dig, eat and distribute dead organic matter and microorganisms, and the quantity of their activity is often huge. Soil animals affect microbial activity, soil water content, soil structure, erosion and plant growth – and all of this affects carbon cycling.
Philipp Porada, Altug Ekici, and Christian Beer
The Cryosphere, 10, 2291–2315, https://doi.org/10.5194/tc-10-2291-2016, https://doi.org/10.5194/tc-10-2291-2016, 2016
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Bryophyte and lichen cover on the forest floor at high latitudes insulates the ground and thus decreases soil temperature. This can protect permafrost soil, stabilising it against global warming. To quantify the insulating effect, we integrate a novel, process-based model of bryophyte and lichen growth into the global land surface model JSBACH. We find an average cooling effect of the bryophyte and lichen cover of 2.7 K, which implies a significant impact on soil temperature at high latitudes.
Christian Beer, Philipp Porada, Altug Ekici, and Matthias Brakebusch
The Cryosphere Discuss., https://doi.org/10.5194/tc-2016-210, https://doi.org/10.5194/tc-2016-210, 2016
Preprint withdrawn
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Models suggest thawing permafrost in future due to climate change. In addition to warming, day-to-day variability of air temperature and precipitation is projected to increase. In an idealized theoretical model experiment we show that such changing short-term variability will reduce soil warming as a consequence of air warming by up to 1 K due to effects on snow and moss insulating layers. This shows the need of a mechanistic representation of such layers in Earth system models.
Stefan Hagemann, Tanja Blome, Altug Ekici, and Christian Beer
Earth Syst. Dynam., 7, 611–625, https://doi.org/10.5194/esd-7-611-2016, https://doi.org/10.5194/esd-7-611-2016, 2016
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The present study analyses how cold-region physical soil processes, especially freezing of soil water, impact large-scale hydrology and climate over Northern Hemisphere high-latitude land areas. For this analysis, an atmosphere–land global climate model was used. It is shown that including these processes in the model leads to improved discharge in spring and a positive land–atmosphere feedback to precipitation over the high latitudes that has previously not been noted for the high latitudes.
Patrick W. Bogaart, Ype van der Velde, Steve W. Lyon, and Stefan C. Dekker
Hydrol. Earth Syst. Sci., 20, 1413–1432, https://doi.org/10.5194/hess-20-1413-2016, https://doi.org/10.5194/hess-20-1413-2016, 2016
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We analyse how stream discharge declines after rain storms. This "recession" behaviour contains information about the capacity of the catchment to hold or release water. Looking at many rivers in Sweden, we were able to link distinct recession regimes to land use and catchment characteristics. Trends in recession behaviour are found to correspond to intensifying agriculture and extensive reforestation. We conclude that both humans and nature reorganizes the soil in order to enhance efficiency.
N. Gentsch, R. Mikutta, R. J. E. Alves, J. Barta, P. Čapek, A. Gittel, G. Hugelius, P. Kuhry, N. Lashchinskiy, J. Palmtag, A. Richter, H. Šantrůčková, J. Schnecker, O. Shibistova, T. Urich, B. Wild, and G. Guggenberger
Biogeosciences, 12, 4525–4542, https://doi.org/10.5194/bg-12-4525-2015, https://doi.org/10.5194/bg-12-4525-2015, 2015
A. A. Harpold, J. A. Marshall, S. W. Lyon, T. B. Barnhart, B. A. Fisher, M. Donovan, K. M. Brubaker, C. J. Crosby, N. F. Glenn, C. L. Glennie, P. B. Kirchner, N. Lam, K. D. Mankoff, J. L. McCreight, N. P. Molotch, K. N. Musselman, J. Pelletier, T. Russo, H. Sangireddy, Y. Sjöberg, T. Swetnam, and N. West
Hydrol. Earth Syst. Sci., 19, 2881–2897, https://doi.org/10.5194/hess-19-2881-2015, https://doi.org/10.5194/hess-19-2881-2015, 2015
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This review's objective is to demonstrate the transformative potential of lidar by critically assessing both challenges and opportunities for transdisciplinary lidar applications in geomorphology, hydrology, and ecology. We find that using lidar to its full potential will require numerous advances, including more powerful open-source processing tools, new lidar acquisition technologies, and improved integration with physically based models and complementary observations.
Y. Sjöberg, P. Marklund, R. Pettersson, and S. W. Lyon
The Cryosphere, 9, 465–478, https://doi.org/10.5194/tc-9-465-2015, https://doi.org/10.5194/tc-9-465-2015, 2015
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Permafrost peatlands are hydrological and biogeochemical hotspots in discontinuous permafrost areas. We estimate the depths to the permafrost table surface and base across a peatland in northern Sweden using ground penetrating radar and electrical resistivity tomography. Seasonal frost tables, taliks, and the permafrost base could be detected. The results highlight the added value of combining techniques for assessing distributions of permafrost in the rapidly changing sporadic permafrost zone.
M. Forkel, N. Carvalhais, S. Schaphoff, W. v. Bloh, M. Migliavacca, M. Thurner, and K. Thonicke
Biogeosciences, 11, 7025–7050, https://doi.org/10.5194/bg-11-7025-2014, https://doi.org/10.5194/bg-11-7025-2014, 2014
C. Buendía, S. Arens, T. Hickler, S. I. Higgins, P. Porada, and A. Kleidon
Biogeosciences, 11, 3661–3683, https://doi.org/10.5194/bg-11-3661-2014, https://doi.org/10.5194/bg-11-3661-2014, 2014
A. Kleidon, M. Renner, and P. Porada
Hydrol. Earth Syst. Sci., 18, 2201–2218, https://doi.org/10.5194/hess-18-2201-2014, https://doi.org/10.5194/hess-18-2201-2014, 2014
R. Giesler, S. W. Lyon, C.-M. Mörth, J. Karlsson, E. M. Karlsson, E. J. Jantze, G. Destouni, and C. Humborg
Biogeosciences, 11, 525–537, https://doi.org/10.5194/bg-11-525-2014, https://doi.org/10.5194/bg-11-525-2014, 2014
P. Porada, B. Weber, W. Elbert, U. Pöschl, and A. Kleidon
Biogeosciences, 10, 6989–7033, https://doi.org/10.5194/bg-10-6989-2013, https://doi.org/10.5194/bg-10-6989-2013, 2013
E. J. Jantze, S. W. Lyon, and G. Destouni
Hydrol. Earth Syst. Sci., 17, 3827–3839, https://doi.org/10.5194/hess-17-3827-2013, https://doi.org/10.5194/hess-17-3827-2013, 2013
S. W. Lyon, M. T. Walter, E. J. Jantze, and J. A. Archibald
Hydrol. Earth Syst. Sci., 17, 269–279, https://doi.org/10.5194/hess-17-269-2013, https://doi.org/10.5194/hess-17-269-2013, 2013
Related subject area
Biogeochemistry: Air - Land Exchange
Aggregation of ice-nucleating macromolecules from Betula pendula pollen determines ice nucleation efficiency
Evaluating adsorption isotherm models for determining the partitioning of ammonium between soil and soil pore water in environmental soil samples
Similar freezing spectra of particles in plant canopies and in the air at a high-altitude site
Anticorrelation of net uptake of atmospheric CO2 by the world ocean and terrestrial biosphere in current carbon cycle models
Impact of meteorological conditions on the biogenic volatile organic compound (BVOC) emission rate from eastern Mediterranean vegetation under drought
Monitoring cropland daily carbon dioxide exchange at field scales with Sentinel-2 satellite imagery
Compound soil and atmospheric drought (CSAD) events and CO2 fluxes of a mixed deciduous forest: the occurrence, impact, and temporal contribution of main drivers
The influence of plant water stress on vegetation–atmosphere exchanges: implications for ozone modelling
An elucidatory model of oxygen’s partial pressure inside substomatal cavities
High interspecific variability in ice nucleation activity suggests pollen ice nucleators are incidental
Using automated machine learning for the upscaling of gross primary productivity
Interpretability of negative latent heat fluxes from eddy covariance measurements in dry conditions
Forest-floor respiration, N2O fluxes, and CH4 fluxes in a subalpine spruce forest: drivers and annual budgets
Constraining 2010–2020 Amazonian carbon flux estimates with satellite solar-induced fluorescence (SIF)
Enhanced net CO2 exchange of a semideciduous forest in the southern Amazon due to diffuse radiation from biomass burning
Observational relationships between ammonia, carbon dioxide and water vapor under a wide range of meteorological and turbulent conditions: RITA-2021 campaign
Environmental controls of winter soil carbon dioxide fluxes in boreal and tundra environments
Origin of secondary fatty alcohols in atmospheric aerosols in a cool–temperate forest based on their mass size distributions
Sap flow and leaf gas exchange response to a drought and heatwave in urban green spaces in a Nordic city
Changes in biogenic volatile organic compound emissions in response to the El Niño–Southern Oscillation
Rethinking the deployment of static chambers for CO2 flux measurement in dry desert soils
Lichen species across Alaska produce highly active and stable ice nucleators
A differentiable, physics-informed ecosystem modeling and learning framework for large-scale inverse problems: demonstration with photosynthesis simulations
Snow–vegetation–atmosphere interactions in alpine tundra
Synergy between TROPOMI sun-induced chlorophyll fluorescence and MODIS spectral reflectance for understanding the dynamics of gross primary productivity at Integrated Carbon Observatory System (ICOS) ecosystem flux sites
Atmospheric deposition of reactive nitrogen to a deciduous forest in the southern Appalachian Mountains
Tropical cyclones facilitate recovery of forest leaf area from dry spells in East Asia
Minor contributions of daytime monoterpenes are major contributors to atmospheric reactivity
Using atmospheric observations to quantify annual biogenic carbon dioxide fluxes on the Alaska North Slope
Forest–atmosphere exchange of reactive nitrogen in a remote region – Part II: Modeling annual budgets
Growth and actual leaf temperature modulate CO2 responsiveness of monoterpene emissions from holm oak in opposite ways
Multi-year observations reveal a larger than expected autumn respiration signal across northeast Eurasia
Reviews and syntheses: VOC emissions from soil cover in boreal and temperate natural ecosystems of the Northern Hemisphere
Internal tree cycling and atmospheric archiving of mercury: examination with concentration and stable isotope analyses
Contrasting drought legacy effects on gross primary productivity in a mixed versus pure beech forest
CO2 and CH4 exchanges between moist moss tundra and atmosphere on Kapp Linné, Svalbard
Recent extreme drought events in the Amazon rainforest: assessment of different precipitation and evapotranspiration datasets and drought indicators
Variability and uncertainty in flux-site-scale net ecosystem exchange simulations based on machine learning and remote sensing: a systematic evaluation
Update of a biogeochemical model with process-based algorithms to predict ammonia volatilization from fertilized cultivated uplands and rice paddy fields
Massive warming-induced carbon loss from subalpine grassland soils in an altitudinal transplantation experiment
Climatic variation drives loss and restructuring of carbon and nitrogen in boreal forest wildfire
Gaps in network infrastructure limit our understanding of biogenic methane emissions for the United States
Changes of the aerodynamic characteristics of a flux site after an extensive windthrow
Carbon sequestration potential of street tree plantings in Helsinki
Technical note: Incorporating expert domain knowledge into causal structure discovery workflows
Sensitivity of biomass burning emissions estimates to land surface information
A convolutional neural network for spatial downscaling of satellite-based solar-induced chlorophyll fluorescence (SIFnet)
Influence of plant ecophysiology on ozone dry deposition: comparing between multiplicative and photosynthesis-based dry deposition schemes and their responses to rising CO2 level
Modeling the interinfluence of fertilizer-induced NH3 emission, nitrogen deposition, and aerosol radiative effects using modified CESM2
Physiological and climate controls on foliar mercury uptake by European tree species
Florian Wieland, Nadine Bothen, Ralph Schwidetzky, Teresa M. Seifried, Paul Bieber, Ulrich Pöschl, Konrad Meister, Mischa Bonn, Janine Fröhlich-Nowoisky, and Hinrich Grothe
Biogeosciences, 22, 103–115, https://doi.org/10.5194/bg-22-103-2025, https://doi.org/10.5194/bg-22-103-2025, 2025
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Betula pendula is a widespread birch tree species containing ice nucleation agents that can trigger the freezing of cloud droplets and thereby alter the evolution of clouds. Our study identifies three distinct ice-nucleating macromolecule (INM) aggregates of varying size that can nucleate ice at temperatures up to –5.4°C. Our findings suggest that these vegetation-derived particles may influence atmospheric processes, weather, and climate more strongly than previously thought.
Matthew G. Davis, Kevin Yan, and Jennifer G. Murphy
Biogeosciences, 21, 5381–5392, https://doi.org/10.5194/bg-21-5381-2024, https://doi.org/10.5194/bg-21-5381-2024, 2024
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Ammonia applied as fertilizer can volatilize into the atmosphere. This can threaten vulnerable ecosystems and human health. We investigated the partitioning of ammonia between an immobile adsorbed phase and mobile aqueous phase using several adsorption models. Using the Temkin model we determined that previous approaches to this issue may overestimate the quantity available for exchange by a factor of 5–20, suggesting that ammonia emissions from soil may be overestimated.
Annika Einbock and Franz Conen
Biogeosciences, 21, 5219–5231, https://doi.org/10.5194/bg-21-5219-2024, https://doi.org/10.5194/bg-21-5219-2024, 2024
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A small fraction of particles found at great heights in the atmosphere can freeze cloud droplets at temperatures of ≥ −10 °C and thus influence cloud properties. We provide a novel type of evidence that plant canopies are a major source of such biological ice-nucleating particles in the air above the Alps, potentially affecting mixed-phase cloud development.
Stephen E. Schwartz
Biogeosciences, 21, 5045–5057, https://doi.org/10.5194/bg-21-5045-2024, https://doi.org/10.5194/bg-21-5045-2024, 2024
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Anticorrelation in uptake of atmospheric CO2 following pulse emission or abrupt cessation of emissions is examined in two key model intercomparison studies. In both studies net transfer coefficients from the atmosphere to the world ocean and the terrestrial biosphere are anticorrelated across models, reducing inter-model diversity in decrease of atmospheric CO2 following the perturbation, increasing uncertainties of global warming potentials and consequences of prospective emission reductions.
Qian Li, Gil Lerner, Einat Bar, Efraim Lewinsohn, and Eran Tas
Biogeosciences, 21, 4133–4147, https://doi.org/10.5194/bg-21-4133-2024, https://doi.org/10.5194/bg-21-4133-2024, 2024
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Our research indicates that instantaneous changes in meteorological parameters better reflect drought-induced changes in the emission rates of biogenic volatile organic compounds (BVOCs) from natural vegetation than their absolute values. However, following a small amount of irrigation, this trend became more moderate or reversed, accompanied by a dramatic increase in BVOC emission rates. These findings advance our understanding of BVOC emissions under climate change.
Pia Gottschalk, Aram Kalhori, Zhan Li, Christian Wille, and Torsten Sachs
Biogeosciences, 21, 3593–3616, https://doi.org/10.5194/bg-21-3593-2024, https://doi.org/10.5194/bg-21-3593-2024, 2024
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To improve the accuracy of spatial carbon exchange estimates, we evaluated simple linear models for net ecosystem exchange (NEE) and gross primary productivity (GPP) and how they can be used to upscale the CO2 exchange of agricultural fields. The models are solely driven by Sentinel-2-derived vegetation indices (VIs). Evaluations show that different VIs have variable power to estimate NEE and GPP of crops in different years. The overall performance is as good as results from complex crop models.
Liliana Scapucci, Ankit Shekhar, Sergio Aranda-Barranco, Anastasiia Bolshakova, Lukas Hörtnagl, Mana Gharun, and Nina Buchmann
Biogeosciences, 21, 3571–3592, https://doi.org/10.5194/bg-21-3571-2024, https://doi.org/10.5194/bg-21-3571-2024, 2024
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Forests face increased exposure to “compound soil and atmospheric drought” (CSAD) events due to global warming. We examined the impacts and drivers of CO2 fluxes during CSAD events at multiple layers of a deciduous forest over 18 years. Results showed reduced net ecosystem productivity and forest-floor respiration during CSAD events, mainly driven by soil and atmospheric drought. This unpredictability in forest CO2 fluxes jeopardises reforestation projects aimed at mitigating CO2 emissions.
Tamara Emmerichs, Yen-Sen Lu, and Domenico Taraborrelli
Biogeosciences, 21, 3251–3269, https://doi.org/10.5194/bg-21-3251-2024, https://doi.org/10.5194/bg-21-3251-2024, 2024
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We assess the representation of the plant response to surface water in a global atmospheric chemistry model. This sensitivity is crucial for the return of precipitation back into the atmosphere and thus significantly impacts the representation of weather as well as air quality. The newly implemented response function reduces this process and has a better comparison with satellite observations. This yields a higher intensity of unusual warm periods and higher production of air pollutants.
Andrew S. Kowalski
EGUsphere, https://doi.org/10.5194/egusphere-2024-1966, https://doi.org/10.5194/egusphere-2024-1966, 2024
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The laws of physics show that leaf oxygen is not photosynthetically enriched, but extremely dilute due to the overwhelming effects of humidification. This challenges the prevailing diffusion-only paradigm regarding leaf gas exchanges, requiring non-diffusive transport. Such transport also explains why fluxes of carbon dioxide and water vapour become decoupled at very high temperatures, as has been observed but not explained by plant physiologists.
Nina L. H. Kinney, Charles A. Hepburn, Matthew I. Gibson, Daniel Ballesteros, and Thomas F. Whale
Biogeosciences, 21, 3201–3214, https://doi.org/10.5194/bg-21-3201-2024, https://doi.org/10.5194/bg-21-3201-2024, 2024
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Molecules released from plant pollen induce the formation of ice from supercooled water at temperatures warm enough to suggest an underlying function for this activity. In this study we show that ice nucleators are ubiquitous in pollen. We suggest the molecules responsible fulfil some unrelated biological function and nucleate ice incidentally. The ubiquity of ice-nucleating molecules in pollen and particularly active examples reveal a greater potential for pollen to impact weather and climate.
Max Gaber, Yanghui Kang, Guy Schurgers, and Trevor Keenan
Biogeosciences, 21, 2447–2472, https://doi.org/10.5194/bg-21-2447-2024, https://doi.org/10.5194/bg-21-2447-2024, 2024
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Gross primary productivity (GPP) describes the photosynthetic carbon assimilation, which plays a vital role in the carbon cycle. We can measure GPP locally, but producing larger and continuous estimates is challenging. Here, we present an approach to extrapolate GPP to a global scale using satellite imagery and automated machine learning. We benchmark different models and predictor variables and achieve an estimate that can capture 75 % of the variation in GPP.
Sinikka J. Paulus, Rene Orth, Sung-Ching Lee, Anke Hildebrandt, Martin Jung, Jacob A. Nelson, Tarek Sebastian El-Madany, Arnaud Carrara, Gerardo Moreno, Matthias Mauder, Jannis Groh, Alexander Graf, Markus Reichstein, and Mirco Migliavacca
Biogeosciences, 21, 2051–2085, https://doi.org/10.5194/bg-21-2051-2024, https://doi.org/10.5194/bg-21-2051-2024, 2024
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Porous materials are known to reversibly trap water from the air, even at low humidity. However, this behavior is poorly understood for soils. In this analysis, we test whether eddy covariance is able to measure the so-called adsorption of atmospheric water vapor by soils. We find that this flux occurs frequently during dry nights in a Mediterranean ecosystem, while EC detects downwardly directed vapor fluxes. These results can help to map moisture uptake globally.
Luana Krebs, Susanne Burri, Iris Feigenwinter, Mana Gharun, Philip Meier, and Nina Buchmann
Biogeosciences, 21, 2005–2028, https://doi.org/10.5194/bg-21-2005-2024, https://doi.org/10.5194/bg-21-2005-2024, 2024
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This study explores year-round forest-floor greenhouse gas (GHG) fluxes in a Swiss spruce forest. Soil temperature and snow depth affected forest-floor respiration, while CH4 uptake was linked to snow cover. Negligible N2O fluxes were observed. In 2022, a warm year, CO2 emissions notably increased. The study suggests rising forest-floor GHG emissions due to climate change, impacting carbon sink behavior. Thus, for future forest management, continuous year-round GHG flux measurements are crucial.
Archana Dayalu, Marikate Mountain, Bharat Rastogi, John B. Miller, and Luciana Gatti
EGUsphere, https://doi.org/10.5194/egusphere-2024-1082, https://doi.org/10.5194/egusphere-2024-1082, 2024
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The Amazon is facing unprecedented disturbance. Determining trends in Amazonia’s carbon balance and its sensitivity to disturbance requires reliable vegetation models that adequately capture how its ecosystems exchange carbon with the atmosphere. Our work presents novel estimates of vegetation carbon exchange with the atmosphere across the Amazon, estimated using ground- and satellite-based ecosystem measurements. Our model agrees with independent aircraft observations from discrete locations.
Simone Rodrigues, Glauber Cirino, Demerval Moreira, Andrea Pozzer, Rafael Palácios, Sung-Ching Lee, Breno Imbiriba, José Nogueira, Maria Isabel Vitorino, and George Vourlitis
Biogeosciences, 21, 843–868, https://doi.org/10.5194/bg-21-843-2024, https://doi.org/10.5194/bg-21-843-2024, 2024
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The radiative effects of atmospheric particles are still unknown for a wide variety of species and types of vegetation present in Amazonian biomes. We examined the effects of aerosols on solar radiation and their impacts on photosynthesis in an area of semideciduous forest in the southern Amazon Basin. Under highly smoky-sky conditions, our results show substantial photosynthetic interruption (20–70 %), attributed specifically to the decrease in solar radiation and leaf canopy temperature.
Ruben B. Schulte, Jordi Vilà-Guerau de Arellano, Susanna Rutledge-Jonker, Shelley van der Graaf, Jun Zhang, and Margreet C. van Zanten
Biogeosciences, 21, 557–574, https://doi.org/10.5194/bg-21-557-2024, https://doi.org/10.5194/bg-21-557-2024, 2024
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We analyzed measurements with the aim of finding relations between the surface atmosphere exchange of NH3 and the CO2 uptake and transpiration by vegetation. We found a high correlation of daytime NH3 emissions with both latent heat flux and photosynthetically active radiation. Very few simultaneous measurements of NH3, CO2 fluxes and meteorological variables exist at sub-diurnal timescales. This study paves the way to finding more robust relations between the NH3 exchange flux and CO2 uptake.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Carolina Voigt, Nick Rutter, Paul Mann, Jean-Daniel Sylvain, and Alexandre Roy
Biogeosciences, 20, 5087–5108, https://doi.org/10.5194/bg-20-5087-2023, https://doi.org/10.5194/bg-20-5087-2023, 2023
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We present an analysis of soil CO2 emissions in boreal and tundra regions during the non-growing season. We show that when the soil is completely frozen, soil temperature is the main control on CO2 emissions. When the soil is around the freezing point, with a mix of liquid water and ice, the liquid water content is the main control on CO2 emissions. This study highlights that the vegetation–snow–soil interactions must be considered to understand soil CO2 emissions during the non-growing season.
Yuhao Cui, Eri Tachibana, Kimitaka Kawamura, and Yuzo Miyazaki
Biogeosciences, 20, 4969–4980, https://doi.org/10.5194/bg-20-4969-2023, https://doi.org/10.5194/bg-20-4969-2023, 2023
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Fatty alcohols (FAs) are major components of surface lipids in plant leaves and serve as surface-active aerosols. Our study on the aerosol size distributions in a forest suggests that secondary FAs (SFAs) originated from plant waxes and that leaf senescence status is likely an important factor controlling the size distribution of SFAs. This study provides new insights into the sources of primary biological aerosol particles (PBAPs) and their effects on the aerosol ice nucleation activity.
Joyson Ahongshangbam, Liisa Kulmala, Jesse Soininen, Yasmin Frühauf, Esko Karvinen, Yann Salmon, Anna Lintunen, Anni Karvonen, and Leena Järvi
Biogeosciences, 20, 4455–4475, https://doi.org/10.5194/bg-20-4455-2023, https://doi.org/10.5194/bg-20-4455-2023, 2023
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Urban vegetation is important for removing urban CO2 emissions and cooling. We studied the response of urban trees' functions (photosynthesis and transpiration) to a heatwave and drought at four urban green areas in the city of Helsinki. We found that tree water use was increased during heatwave and drought periods, but there was no change in the photosynthesis rates. The heat and drought conditions were severe at the local scale but were not excessive enough to restrict urban trees' functions.
Ryan Vella, Andrea Pozzer, Matthew Forrest, Jos Lelieveld, Thomas Hickler, and Holger Tost
Biogeosciences, 20, 4391–4412, https://doi.org/10.5194/bg-20-4391-2023, https://doi.org/10.5194/bg-20-4391-2023, 2023
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We investigated the effect of the El Niño–Southern Oscillation (ENSO) on biogenic volatile organic compound (BVOC) emissions from plants. ENSO events can cause a significant increase in these emissions, which have a long-term impact on the Earth's atmosphere. Persistent ENSO conditions can cause long-term changes in vegetation, resulting in even higher BVOC emissions. We link ENSO-induced emission anomalies with driving atmospheric and vegetational variables.
Nadav Bekin and Nurit Agam
Biogeosciences, 20, 3791–3802, https://doi.org/10.5194/bg-20-3791-2023, https://doi.org/10.5194/bg-20-3791-2023, 2023
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The mechanisms of soil CO2 flux in dry desert soils are not fully understood. Yet studies conducted in desert ecosystems rarely discuss potential errors related to using the commonly used flux chambers in dry and bare soils. In our study, the conventional deployment practice of the chambers underestimated the instantaneous CO2 flux by up to 50 % and the total daily CO2 uptake by 35 %. This suggests that desert soils are a larger carbon sink than previously reported.
Rosemary J. Eufemio, Ingrid de Almeida Ribeiro, Todd L. Sformo, Gary A. Laursen, Valeria Molinero, Janine Fröhlich-Nowoisky, Mischa Bonn, and Konrad Meister
Biogeosciences, 20, 2805–2812, https://doi.org/10.5194/bg-20-2805-2023, https://doi.org/10.5194/bg-20-2805-2023, 2023
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Lichens, the dominant vegetation in the Arctic, contain ice nucleators (INs) that enable freezing close to 0°C. Yet the abundance, diversity, and function of lichen INs is unknown. Our screening of lichens across Alaska reveal that most species have potent INs. We find that lichens contain two IN populations which retain activity under environmentally relevant conditions. The ubiquity and stability of lichen INs suggest that they may have considerable impacts on local atmospheric patterns.
Doaa Aboelyazeed, Chonggang Xu, Forrest M. Hoffman, Jiangtao Liu, Alex W. Jones, Chris Rackauckas, Kathryn Lawson, and Chaopeng Shen
Biogeosciences, 20, 2671–2692, https://doi.org/10.5194/bg-20-2671-2023, https://doi.org/10.5194/bg-20-2671-2023, 2023
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Photosynthesis is critical for life and has been affected by the changing climate. Many parameters come into play while modeling, but traditional calibration approaches face many issues. Our framework trains coupled neural networks to provide parameters to a photosynthesis model. Using big data, we independently found parameter values that were correlated with those in the literature while giving higher correlation and reduced biases in photosynthesis rates.
Norbert Pirk, Kristoffer Aalstad, Yeliz A. Yilmaz, Astrid Vatne, Andrea L. Popp, Peter Horvath, Anders Bryn, Ane Victoria Vollsnes, Sebastian Westermann, Terje Koren Berntsen, Frode Stordal, and Lena Merete Tallaksen
Biogeosciences, 20, 2031–2047, https://doi.org/10.5194/bg-20-2031-2023, https://doi.org/10.5194/bg-20-2031-2023, 2023
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We measured the land–atmosphere exchange of CO2 and water vapor in alpine Norway over 3 years. The extremely snow-rich conditions in 2020 reduced the total annual evapotranspiration to 50 % and reduced the growing-season carbon assimilation to turn the ecosystem from a moderate annual carbon sink to an even stronger source. Our analysis suggests that snow cover anomalies are driving the most consequential short-term responses in this ecosystem’s functioning.
Hamadou Balde, Gabriel Hmimina, Yves Goulas, Gwendal Latouche, and Kamel Soudani
Biogeosciences, 20, 1473–1490, https://doi.org/10.5194/bg-20-1473-2023, https://doi.org/10.5194/bg-20-1473-2023, 2023
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This study focuses on the relationship between sun-induced chlorophyll fluorescence (SIF) and ecosystem gross primary productivity (GPP) across the ICOS European flux tower network. It shows that SIF, coupled with reflectance observations, explains over 80 % of the GPP variability across diverse ecosystems but fails to bring new information compared to reflectance alone at coarse spatial scales (~5 km). These findings have applications in agriculture and ecophysiological studies.
John T. Walker, Xi Chen, Zhiyong Wu, Donna Schwede, Ryan Daly, Aleksandra Djurkovic, A. Christopher Oishi, Eric Edgerton, Jesse Bash, Jennifer Knoepp, Melissa Puchalski, John Iiames, and Chelcy F. Miniat
Biogeosciences, 20, 971–995, https://doi.org/10.5194/bg-20-971-2023, https://doi.org/10.5194/bg-20-971-2023, 2023
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Better estimates of atmospheric nitrogen (N) deposition are needed to accurately assess ecosystem risk and impacts from deposition of nutrients and acidity. Using measurements and modeling, we estimate total N deposition of 6.7 kg N ha−1 yr−1 at a forest site in the southern Appalachian Mountains, a region sensitive to atmospheric deposition. Reductions in deposition of reduced forms of N (ammonia and ammonium) will be needed to meet the lowest estimates of N critical loads for the region.
Yi-Ying Chen and Sebastiaan Luyssaert
Biogeosciences, 20, 349–363, https://doi.org/10.5194/bg-20-349-2023, https://doi.org/10.5194/bg-20-349-2023, 2023
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Tropical cyclones are typically assumed to be associated with ecosystem damage. This study challenges this assumption and suggests that instead of reducing leaf area, cyclones in East Asia may increase leaf area by alleviating water stress.
Deborah F. McGlynn, Graham Frazier, Laura E. R. Barry, Manuel T. Lerdau, Sally E. Pusede, and Gabriel Isaacman-VanWertz
Biogeosciences, 20, 45–55, https://doi.org/10.5194/bg-20-45-2023, https://doi.org/10.5194/bg-20-45-2023, 2023
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Using a custom-made gas chromatography flame ionization detector, 2 years of speciated hourly biogenic volatile organic compound data were collected in a forest in central Virginia. We identify diurnal and seasonal variability in the data, which is shown to impact atmospheric oxidant budgets. A comparison with emission models identified discrepancies with implications for model outcomes. We suggest increased monitoring of speciated biogenic volatile organic compounds to improve modeled results.
Luke D. Schiferl, Jennifer D. Watts, Erik J. L. Larson, Kyle A. Arndt, Sébastien C. Biraud, Eugénie S. Euskirchen, Jordan P. Goodrich, John M. Henderson, Aram Kalhori, Kathryn McKain, Marikate E. Mountain, J. William Munger, Walter C. Oechel, Colm Sweeney, Yonghong Yi, Donatella Zona, and Róisín Commane
Biogeosciences, 19, 5953–5972, https://doi.org/10.5194/bg-19-5953-2022, https://doi.org/10.5194/bg-19-5953-2022, 2022
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As the Arctic rapidly warms, vast stores of thawing permafrost could release carbon dioxide (CO2) into the atmosphere. We combined observations of atmospheric CO2 concentrations from aircraft and a tower with observed CO2 fluxes from tundra ecosystems and found that the Alaskan North Slope in not a consistent source nor sink of CO2. Our study shows the importance of using both site-level and atmospheric measurements to constrain regional net CO2 fluxes and improve biogenic processes in models.
Pascal Wintjen, Frederik Schrader, Martijn Schaap, Burkhard Beudert, Richard Kranenburg, and Christian Brümmer
Biogeosciences, 19, 5287–5311, https://doi.org/10.5194/bg-19-5287-2022, https://doi.org/10.5194/bg-19-5287-2022, 2022
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For the first time, we compared four methods for estimating the annual dry deposition of total reactive nitrogen into a low-polluted forest ecosystem. In our analysis, we used 2.5 years of flux measurements, an in situ modeling approach, a large-scale chemical transport model (CTM), and canopy budget models. Annual nitrogen dry deposition budgets ranged between 4.3 and 6.7 kg N ha−1 a−1, depending on the applied method.
Michael Staudt, Juliane Daussy, Joseph Ingabire, and Nafissa Dehimeche
Biogeosciences, 19, 4945–4963, https://doi.org/10.5194/bg-19-4945-2022, https://doi.org/10.5194/bg-19-4945-2022, 2022
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We studied the short- and long-term effects of CO2 as a function of temperature on monoterpene emissions from holm oak. Similarly to isoprene, emissions decreased non-linearly with increasing CO2, with no differences among compounds and chemotypes. The CO2 response was modulated by actual leaf and growth temperature but not by growth CO2. Estimates of annual monoterpene release under double CO2 suggest that CO2 inhibition does not offset the increase in emissions due to expected warming.
Brendan Byrne, Junjie Liu, Yonghong Yi, Abhishek Chatterjee, Sourish Basu, Rui Cheng, Russell Doughty, Frédéric Chevallier, Kevin W. Bowman, Nicholas C. Parazoo, David Crisp, Xing Li, Jingfeng Xiao, Stephen Sitch, Bertrand Guenet, Feng Deng, Matthew S. Johnson, Sajeev Philip, Patrick C. McGuire, and Charles E. Miller
Biogeosciences, 19, 4779–4799, https://doi.org/10.5194/bg-19-4779-2022, https://doi.org/10.5194/bg-19-4779-2022, 2022
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Plants draw CO2 from the atmosphere during the growing season, while respiration releases CO2 to the atmosphere throughout the year, driving seasonal variations in atmospheric CO2 that can be observed by satellites, such as the Orbiting Carbon Observatory 2 (OCO-2). Using OCO-2 XCO2 data and space-based constraints on plant growth, we show that permafrost-rich northeast Eurasia has a strong seasonal release of CO2 during the autumn, hinting at an unexpectedly large respiration signal from soils.
Valery A. Isidorov and Andrej A. Zaitsev
Biogeosciences, 19, 4715–4746, https://doi.org/10.5194/bg-19-4715-2022, https://doi.org/10.5194/bg-19-4715-2022, 2022
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Biogenic volatile organic compounds (VOCs) play a critical role in earth-system processes: they are
main playersin the formation of tropospheric O3 and secondary aerosols, which have a significant impact on climate, human health and crops. A complex mixture of VOCs, formed as a result of physicochemical and biological processes, is released into the atmosphere from the forest floor. This review presents data on the composition of VOCs and contribution of various processes to their emissions.
David S. McLagan, Harald Biester, Tomas Navrátil, Stephan M. Kraemer, and Lorenz Schwab
Biogeosciences, 19, 4415–4429, https://doi.org/10.5194/bg-19-4415-2022, https://doi.org/10.5194/bg-19-4415-2022, 2022
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Spruce and larch trees are effective archiving species for historical atmospheric mercury using growth rings of bole wood. Mercury stable isotope analysis proved an effective tool to characterise industrial mercury signals and assess mercury uptake pathways (leaf uptake for both wood and bark) and mercury cycling within the trees. These data detail important information for understanding the mercury biogeochemical cycle particularly in forest systems.
Xin Yu, René Orth, Markus Reichstein, Michael Bahn, Anne Klosterhalfen, Alexander Knohl, Franziska Koebsch, Mirco Migliavacca, Martina Mund, Jacob A. Nelson, Benjamin D. Stocker, Sophia Walther, and Ana Bastos
Biogeosciences, 19, 4315–4329, https://doi.org/10.5194/bg-19-4315-2022, https://doi.org/10.5194/bg-19-4315-2022, 2022
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Identifying drought legacy effects is challenging because they are superimposed on variability driven by climate conditions in the recovery period. We develop a residual-based approach to quantify legacies on gross primary productivity (GPP) from eddy covariance data. The GPP reduction due to legacy effects is comparable to the concurrent effects at two sites in Germany, which reveals the importance of legacy effects. Our novel methodology can be used to quantify drought legacies elsewhere.
Anders Lindroth, Norbert Pirk, Ingibjörg S. Jónsdóttir, Christian Stiegler, Leif Klemedtsson, and Mats B. Nilsson
Biogeosciences, 19, 3921–3934, https://doi.org/10.5194/bg-19-3921-2022, https://doi.org/10.5194/bg-19-3921-2022, 2022
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We measured the fluxes of carbon dioxide and methane between a moist moss tundra and the atmosphere on Svalbard in order to better understand how such ecosystems are affecting the climate and vice versa. We found that the system was a small sink of carbon dioxide and a small source of methane. These fluxes are small in comparison with other tundra ecosystems in the high Arctic. Analysis of temperature sensitivity showed that respiration was more sensitive than photosynthesis above about 6 ℃.
Phillip Papastefanou, Christian S. Zang, Zlatan Angelov, Aline Anderson de Castro, Juan Carlos Jimenez, Luiz Felipe Campos De Rezende, Romina C. Ruscica, Boris Sakschewski, Anna A. Sörensson, Kirsten Thonicke, Carolina Vera, Nicolas Viovy, Celso Von Randow, and Anja Rammig
Biogeosciences, 19, 3843–3861, https://doi.org/10.5194/bg-19-3843-2022, https://doi.org/10.5194/bg-19-3843-2022, 2022
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The Amazon rainforest has been hit by multiple severe drought events. In this study, we assess the severity and spatial extent of the extreme drought years 2005, 2010 and 2015/16 in the Amazon. Using nine different precipitation datasets and three drought indicators we find large differences in drought stress across the Amazon region. We conclude that future studies should use multiple rainfall datasets and drought indicators when estimating the impact of drought stress in the Amazon region.
Haiyang Shi, Geping Luo, Olaf Hellwich, Mingjuan Xie, Chen Zhang, Yu Zhang, Yuangang Wang, Xiuliang Yuan, Xiaofei Ma, Wenqiang Zhang, Alishir Kurban, Philippe De Maeyer, and Tim Van de Voorde
Biogeosciences, 19, 3739–3756, https://doi.org/10.5194/bg-19-3739-2022, https://doi.org/10.5194/bg-19-3739-2022, 2022
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A number of studies have been conducted by using machine learning approaches to simulate carbon fluxes. We performed a meta-analysis of these net ecosystem exchange (NEE) simulations. Random forests and support vector machines performed better than other algorithms. Models with larger timescales had a lower accuracy. For different plant functional types (PFTs), there were significant differences in the predictors used and their effects on model accuracy.
Siqi Li, Wei Zhang, Xunhua Zheng, Yong Li, Shenghui Han, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, and Chong Zhang
Biogeosciences, 19, 3001–3019, https://doi.org/10.5194/bg-19-3001-2022, https://doi.org/10.5194/bg-19-3001-2022, 2022
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The CNMM–DNDC model was modified to simulate ammonia volatilization (AV) from croplands. AV from cultivated uplands followed the first-order kinetics, which was jointly regulated by the factors of soil properties and meteorological conditions. AV simulation from rice paddy fields was improved by incorporating Jayaweera–Mikkelsen mechanisms. The modified model performed well in simulating the observed cumulative AV measured from 63 fertilization events in China.
Matthias Volk, Matthias Suter, Anne-Lena Wahl, and Seraina Bassin
Biogeosciences, 19, 2921–2937, https://doi.org/10.5194/bg-19-2921-2022, https://doi.org/10.5194/bg-19-2921-2022, 2022
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Because soils are an important sink for greenhouse gasses, we subjected sub-alpine grassland to a six-level climate change treatment.
Two independent methods showed that at warming > 1.5 °C the grassland ecosystem lost ca. 14 % or ca. 1 kg C m−2 in 5 years.
This shrinking of the terrestrial C sink implies a substantial positive feedback to the atmospheric greenhouse effect.
It is likely that this dramatic C loss is a transient effect before a new, climate-adjusted steady state is reached.
Johan A. Eckdahl, Jeppe A. Kristensen, and Daniel B. Metcalfe
Biogeosciences, 19, 2487–2506, https://doi.org/10.5194/bg-19-2487-2022, https://doi.org/10.5194/bg-19-2487-2022, 2022
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This study found climate to be a driving force for increasing per area emissions of greenhouse gases and removal of important nutrients from high-latitude forests due to wildfire. It used detailed direct measurements over a large area to uncover patterns and mechanisms of restructuring of forest carbon and nitrogen pools that are extrapolatable to larger regions. It also takes a step forward in filling gaps in global knowledge of northern forest response to climate-change-strengthened wildfires.
Sparkle L. Malone, Youmi Oh, Kyle A. Arndt, George Burba, Roisin Commane, Alexandra R. Contosta, Jordan P. Goodrich, Henry W. Loescher, Gregory Starr, and Ruth K. Varner
Biogeosciences, 19, 2507–2522, https://doi.org/10.5194/bg-19-2507-2022, https://doi.org/10.5194/bg-19-2507-2022, 2022
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To understand the CH4 flux potential of natural ecosystems and agricultural lands in the United States of America, a multi-scale CH4 observation network focused on CH4 flux rates, processes, and scaling methods is required. This can be achieved with a network of ground-based observations that are distributed based on climatic regions and land cover.
Bruna R. F. Oliveira, Jan J. Keizer, and Thomas Foken
Biogeosciences, 19, 2235–2243, https://doi.org/10.5194/bg-19-2235-2022, https://doi.org/10.5194/bg-19-2235-2022, 2022
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This study analyzes the impacts of this windthrow on the aerodynamic characteristics of zero-plane displacement and roughness length and, ultimately, their implications for the turbulent fluxes. The turbulent fluxes were only affected to a minor degree by the windthrow, but the footprint area of the flux tower changed markedly so that the target area of the measurements had to be redetermined.
Minttu Havu, Liisa Kulmala, Pasi Kolari, Timo Vesala, Anu Riikonen, and Leena Järvi
Biogeosciences, 19, 2121–2143, https://doi.org/10.5194/bg-19-2121-2022, https://doi.org/10.5194/bg-19-2121-2022, 2022
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The carbon sequestration potential of two street tree species and the soil beneath them was quantified with the urban land surface model SUEWS and the soil carbon model Yasso. The street tree plantings turned into a modest sink of carbon from the atmosphere after 14 years. Overall, the results indicate the importance of soil in urban carbon sequestration estimations, as soil respiration exceeded the carbon uptake in the early phase, due to the high initial carbon loss from the soil.
Jarmo Mäkelä, Laila Melkas, Ivan Mammarella, Tuomo Nieminen, Suyog Chandramouli, Rafael Savvides, and Kai Puolamäki
Biogeosciences, 19, 2095–2099, https://doi.org/10.5194/bg-19-2095-2022, https://doi.org/10.5194/bg-19-2095-2022, 2022
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Causal structure discovery algorithms have been making headway into Earth system sciences, and they can be used to increase our understanding on biosphere–atmosphere interactions. In this paper we present a procedure on how to utilize prior knowledge of the domain experts together with these algorithms in order to find more robust causal structure models. We also demonstrate how to avoid pitfalls such as over-fitting and concept drift during this process.
Makoto Saito, Tomohiro Shiraishi, Ryuichi Hirata, Yosuke Niwa, Kazuyuki Saito, Martin Steinbacher, Doug Worthy, and Tsuneo Matsunaga
Biogeosciences, 19, 2059–2078, https://doi.org/10.5194/bg-19-2059-2022, https://doi.org/10.5194/bg-19-2059-2022, 2022
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This study tested combinations of two sources of AGB data and two sources of LCC data and used the same burned area satellite data to estimate BB CO emissions. Our analysis showed large discrepancies in annual mean CO emissions and explicit differences in the simulated CO concentrations among the BB emissions estimates. This study has confirmed that BB emissions estimates are sensitive to the land surface information on which they are based.
Johannes Gensheimer, Alexander J. Turner, Philipp Köhler, Christian Frankenberg, and Jia Chen
Biogeosciences, 19, 1777–1793, https://doi.org/10.5194/bg-19-1777-2022, https://doi.org/10.5194/bg-19-1777-2022, 2022
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We develop a convolutional neural network, named SIFnet, that increases the spatial resolution of SIF from TROPOMI by a factor of 10 to a spatial resolution of 0.005°. SIFnet utilizes coarse SIF observations, together with a broad range of high-resolution auxiliary data. The insights gained from interpretable machine learning techniques allow us to make quantitative claims about the relationships between SIF and other common parameters related to photosynthesis.
Shihan Sun, Amos P. K. Tai, David H. Y. Yung, Anthony Y. H. Wong, Jason A. Ducker, and Christopher D. Holmes
Biogeosciences, 19, 1753–1776, https://doi.org/10.5194/bg-19-1753-2022, https://doi.org/10.5194/bg-19-1753-2022, 2022
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We developed and used a terrestrial biosphere model to compare and evaluate widely used empirical dry deposition schemes with different stomatal approaches and found that using photosynthesis-based stomatal approaches can reduce biases in modeled dry deposition velocities in current chemical transport models. Our study shows systematic errors in current dry deposition schemes and the importance of representing plant ecophysiological processes in models under a changing climate.
Ka Ming Fung, Maria Val Martin, and Amos P. K. Tai
Biogeosciences, 19, 1635–1655, https://doi.org/10.5194/bg-19-1635-2022, https://doi.org/10.5194/bg-19-1635-2022, 2022
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Fertilizer-induced ammonia detrimentally affects the environment by not only directly damaging ecosystems but also indirectly altering climate and soil fertility. To quantify these secondary impacts, we enabled CESM to simulate ammonia emission, chemical evolution, and deposition as a continuous cycle. If synthetic fertilizer use is to soar by 30 % from today's level, we showed that the counteracting impacts will increase the global ammonia emission by 3.3 Tg N per year.
Lena Wohlgemuth, Pasi Rautio, Bernd Ahrends, Alexander Russ, Lars Vesterdal, Peter Waldner, Volkmar Timmermann, Nadine Eickenscheidt, Alfred Fürst, Martin Greve, Peter Roskams, Anne Thimonier, Manuel Nicolas, Anna Kowalska, Morten Ingerslev, Päivi Merilä, Sue Benham, Carmen Iacoban, Günter Hoch, Christine Alewell, and Martin Jiskra
Biogeosciences, 19, 1335–1353, https://doi.org/10.5194/bg-19-1335-2022, https://doi.org/10.5194/bg-19-1335-2022, 2022
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Gaseous mercury is present in the atmosphere all over the globe. During the growing season, plants take up mercury from the air in a similar way as CO2. We investigated which factors impact this vegetational mercury uptake by analyzing a large dataset of leaf mercury uptake rates of trees in Europe. As a result, we conclude that mercury uptake is foremost controlled by tree-intrinsic traits like physiological activity but also by climatic factors like dry conditions in the air and in soils.
Cited articles
Alin, S. R. and Johnson, T. C.: Carbon cycling in large lakes of the world: A
synthesis of production, burial, and lake-atmosphere exchange estimates,
Global Biogeochem. Cy., 21, GB3002, https://doi.org/10.1029/2006gb002881, 2007.
Allison, S. D.: Modeling adaptation of carbon use efficiency in microbial
communities, Front. Microbiol., 5, 1–9, https://doi.org/10.3389/fmicb.2014.00571,
2014.
Allison, S. D., Wallenstein, M. D., and Bradford, M. A.: Soil-carbon
response to warming dependent on microbial physiology, Nat. Geosci., 3,
336–340, 2010.
Anderson, T. R., Hessen, D. O., Elser, J. J., and Urabe, J.: Metabolic
stoichiometry and the fate of excess carbon and nutrients in consumers,
Am. Nat., 165, 1–15, 2005.
Atkin, O. K., Bloomfield, K. J., Reich, P. B., Tjoelker, M. G., Asner, G.
P., Bonal, D., Bonisch, G., Bradford, M. G., Cernusak, L. A., Cosio, E. G.,
Creek, D., Crous, K. Y., Domingues, T. F., Dukes, J. S., Egerton, J. J. G.,
Evans, J. R., Farquhar, G. D., Fyllas, N. M., Gauthier, P. P. G., Gloor, E.,
Gimeno, T. E., Griffin, K. L., Guerrieri, R., Heskel, M. A., Huntingford,
C., Ishida, F. Y., Kattge, J., Lambers, H., Liddell, M. J., Lloyd, J., Lusk,
C. H., Martin, R. E., Maksimov, A. P., Maximov, T. C., Malhi, Y., Medlyn, B.
E., Meir, P., Mercado, L. M., Mirotchnick, N., Ng, D., Niinemets, U.,
O'Sullivan, O. S., Phillips, O. L., Poorter, L., Poot, P., Prentice, I. C.,
Salinas, N., Rowland, L. M., Ryan, M. G., Sitch, S., Slot, M., Smith, N. G.,
Turnbull, M. H., VanderWel, M. C., Valladares, F., Veneklaas, E. J.,
Weerasinghe, L. K., Wirth, C., Wright, I. J., Wythers, K. R., Xiang, J.,
Xiang, S., and Zaragoza-Castells, J.: Global variability in leaf respiration
in relation to climate, plant functional types and leaf traits, New
Phytol., 206, 614–636, https://doi.org/10.1111/nph.13253, 2015.
Azam, F. and Malfatti, F.: Microbial structuring of marine ecosystems,
Nat. Rev. Microbiol., 5, 782–791, https://doi.org/10.1038/nrmicro1747, 2007.
Baskaran, P., Hyvonen, R., Berglund, S. L., Clemmensen, K. E., Agren, G. I.,
Lindahl, B. D., and Manzoni, S.: Modelling the influence of ectomycorrhizal
decomposition on plant nutrition and soil carbon sequestration in boreal
forest ecosystems, New Phytol., 213, 1452–1465, https://doi.org/10.1111/nph.14213, 2017.
Benner, R. and Herndl, G. J.: Bacterially derived dissolved organic matter
in the microbial carbon pump, in: Microbial carbon pump in the ocean, edited
by: Jiao, N., Azam, F., and Sanders, S., Science/AAAS, Washington, DC,
46–48, 2011.
Boberg, J., Finlay, R. D., Stenlid, J., Nasholm, T., and Lindahl, B. D.:
Glucose and ammonium additions affect needle decomposition and carbon
allocation by the litter degrading fungus Mycena epipterygia, Soil Biol.
Biochem., 40, 995–999, https://doi.org/10.1016/j.soilbio.2007.11.005, 2008.
Bölscher, T., Wadsö, L., Börjesson, G., and Herrmann, A. M.:
Differences in substrate use efficiency: impacts of microbial community
composition, land use management, and substrate complexity, Biol. Fert.
Soils, 52, 1–13, https://doi.org/10.1007/s00374-016-1097-5, 2016.
Bradford, M. A. and Crowther, T. W.: Carbon use efficiency and storage in
terrestrial ecosystems, New Phytol., 199, 7–9, https://doi.org/10.1111/nph.12334, 2013.
Buckingham, E.: On physically similar systems, illustrations of the use of
dimensional equations, Phys. Rev., 4, 345–376, 1914.
Calvert, S. E., Bustin, R. M., and Pedersen, T. F.: Lack of evidence for
enhanced preservation of sedimentary organic-matter in the oxygen minimum of
the gulf of California, Geology, 20, 757–760,
https://doi.org/10.1130/0091-7613(1992)020<0757:loefep>2.3.co;2, 1992.
Campioli, M., Vicca, S., Luyssaert, S., Bilcke, J., Ceschia, E., Chapin Iii,
F. S., Ciais, P., Fernandez-Martinez, M., Malhi, Y., Obersteiner, M.,
Olefeldt, D., Papale, D., Piao, S. L., Penuelas, J., Sullivan, P. F., Wang,
X., Zenone, T., and Janssens, I. A.: Biomass production efficiency
controlled by management in temperate and boreal ecosystems, Nat. Geosci.,
8, 843–846, https://doi.org/10.1038/ngeo2553, 2015.
Canfield, D. E.: Factors influencing organic-carbon preservation in
marine-sediments, Chem. Geol., 114, 315–329,
https://doi.org/10.1016/0009-2541(94)90061-2, 1994.
Cannell, M. G. R. and Thornley, J. H. M.: Modelling the components of plant
respiration: Some guiding principles, Ann. Bot.-London, 85, 45–54, 2000.
Chapin, F. S., Woodwell, G. M., Randerson, J. T., Rastetter, E. B., Lovett,
G. M., Baldocchi, D. D., Clark, D. A., Harmon, M. E., Schimel, D. S.,
Valentini, R., Wirth, C., Aber, J. D., Cole, J. J., Goulden, M. L., Harden,
J. W., Heimann, M., Howarth, R. W., Matson, P. A., McGuire, A. D., Melillo,
J. M., Mooney, H. A., Neff, J. C., Houghton, R. A., Pace, M. L., Ryan, M.
G., Running, S. W., Sala, O. E., Schlesinger, W. H., and Schulze, E. D.:
Reconciling carbon-cycle concepts, terminology, and methods, Ecosystems, 9,
1041–1050, https://doi.org/10.1007/s10021-005-0105-7, 2006.
Clark, D. A., Brown, S., Kicklighter, D. W., Chambers, J. Q., Thomlinson, J.
R., and Ni, J.: Measuring net primary production in forests: Concepts and
field methods, Ecol. Appl., 11, 356–370, 2001.
Cole, J. J., Prairie, Y. T., Caraco, N. F., McDowell, W. H., Tranvik, L. J.,
Striegl, R. G., Duarte, C. M., Kortelainen, P., Downing, J. A., Middelburg,
J. J., and Melack, J.: Plumbing the global carbon cycle: Integrating inland
waters into the terrestrial carbon budget, Ecosystems, 10, 171–184,
https://doi.org/10.1007/s10021-006-9013-8, 2007.
Collado, S., Rosas, I., Gonzalez, E., Gutierrez-Lavin, A., and Diaz, M.:
Pseudomonas putida response in membrane bioreactors under salicylic
acid-induced stress conditions, J. Hazard. Mater., 267, 9–16,
https://doi.org/10.1016/j.jhazmat.2013.12.034, 2014.
Cotrufo, M. F., Wallenstein, M. D., Boot, C. M., Denef, K., and Paul, E.:
The Microbial Efficiency-Matrix Stabilization (MEMS) framework integrates
plant litter decomposition with soil organic matter stabilization: do labile
plant inputs form stable soil organic matter?, Glob. Change Biol., 19,
988–995, https://doi.org/10.1111/gcb.12113, 2013.
Darchambeau, F., Faerovig, P. J., and Hessen, D. O.: How Daphnia copes with
excess carbon in its food, Oecologia, 136, 336–346,
https://doi.org/10.1007/s00442-003-1283-7, 2003.
del Giorgio, P. A. and Cole, J. J.: Bacterial growth efficiency in natural
aquatic systems, Annu. Rev. Ecol. Syst., 29, 503–541,
1998.
DeLong, J. P., Okie, J. G., Moses, M. E., Sibly, R. M., and Brown, J. H.:
Shifts in metabolic scaling, production, and efficiency across major
evolutionary transitions of life, P. Natl. Acad.
Sci. USA, 107, 12941–12945,
https://doi.org/10.1073/pnas.1007783107, 2010.
DeLucia, E. H., Drake, J. E., Thomas, R. B., and Gonzalez-Meler, M.: Forest
carbon use efficiency: is respiration a constant fraction of gross primary
production?, Glob. Change Biol., 13, 1157–1167,
https://doi.org/10.1111/j.1365-2486.2007.01365.x, 2007.
Dickman, E. M., Newell, J. M., Gonzalez, M. J., and Vanni, M. J.: Light,
nutrients, and food-chain length constrain planktonic energy transfer
efficiency across multiple trophic levels, P. Natl.
Acad. Sci. USA, 105, 18408–18412,
https://doi.org/10.1073/pnas.0805566105, 2008.
Dijkstra, P., Thomas, S. C., Heinrich, P. L., Koch, G. W., Schwartz, E., and
Hungate, B. A.: Effect of temperature on metabolic activity of intact
microbial communities: Evidence for altered metabolic pathway activity but
not for increased maintenance respiration and reduced carbon use efficiency,
Soil Biol. Biochem., 43, 2023–2031, 2011.
Duarte, C. M. and Prairie, Y. T.: Prevalence of heterotrophy and
atmospheric CO2 emissions from aquatic ecosystems, Ecosystems, 8, 862–870,
https://doi.org/10.1007/s10021-005-0177-4, 2005.
Ducklow, H. W., Steinberg, D. K., and Buesseler, K. O.: Upper ocean carbon
export and the biological pump, Oceanography, 14, 50–58, 2001.
Dunne, J. P., Armstrong, R. A., Gnanadesikan, A., and Sarmiento, J. L.:
Empirical and mechanistic models for the particle export ratio, Global
Biogeochem. Cy., 19, GB4026, https://doi.org/10.1029/2004gb002390, 2005.
Ekblad, A., Wallander, H., Godbold, D. L., Cruz, C., Johnson, D., Baldrian,
P., Bjork, R. G., Epron, D., Kieliszewska-Rokicka, B., Kjoller, R.,
Kraigher, H., Matzner, E., Neumann, J., and Plassard, C.: The production and
turnover of extramatrical mycelium of ectomycorrhizal fungi in forest soils:
role in carbon cycling, Plant Soil, 366, 1–27,
https://doi.org/10.1007/s11104-013-1630-3, 2013.
Ettema, C. H. and Wardle, D. A.: Spatial soil ecology, Trend. Ecol.
Evol., 17, 177–183, 2002.
Falkowski, P. G.: 10.5 – Biogeochemistry of Primary Production in the Sea,
in: Treatise on Geochemistry edited by: Holland, H. and Turekian, K. K.,
Elsevier, Oxford, UK, 163–187, 2014.
Feng, X., Ackerly, D. D., Dawson, T. E., Manzoni, S., Skelton, R. P., Vico,
G., and Thompson, S. E.: The ecohydrological context of drought and
classification of plant responses, Ecol. Lett., in press,
https://doi.org/10.1111/ele.13139, 2018.
Fernandez-Martinez, M., Vicca, S., Janssens, I. A., Sardans, J., Luyssaert,
S., Campioli, M., Chapin Iii, F. S., Ciais, P., Malhi, Y., Obersteiner, M.,
Papale, D., Piao, S. L., Reichstein, M., Roda, F., and Penuelas, J.:
Nutrient availability as the key regulator of global forest carbon balance,
Nat. Clim. Change, 4, 471–476, https://doi.org/10.1038/nclimate2177, 2014.
Frey, S. D., Gupta, V., Elliott, E. T., and Paustian, K.: Protozoan grazing
affects estimates of carbon utilization efficiency of the soil microbial
community, Soil Biol. Biochem., 33, 1759–1768, 2001.
Frey, S. D., Lee, J., Melillo, J. M., and Six, J.: The temperature response
of soil microbial efficiency and its feedback to climate, Nat. Clim.
Change, 3, 395–398, https://doi.org/10.1038/nclimate1796, 2013.
Frouz, J., Liveckova, M., Albrechtova, J., Chronakova, A., Cajthaml, T.,
Pizl, V., Hanel, L., Stary, J., Baldrian, P., Lhotakova, Z., Simackova, H.,
and Cepakova, S.: Is the effect of trees on soil properties mediated by soil
fauna? A case study from post-mining sites, Forest Ecol. Manag.,
309, 87–95, https://doi.org/10.1016/j.foreco.2013.02.013, 2013a.
Frouz, J., Thebault, E., Pizl, V., Adl, S., Cajthaml, T., Baldrian, P.,
Hanel, L., Stary, J., Tajovsky, K., Materna, J., Novakova, A., and de Ruiter,
P. C.: Soil Food Web Changes during Spontaneous Succession at Post Mining
Sites: A Possible Ecosystem Engineering Effect on Food Web Organization?,
Plos One, 8, e79694, https://doi.org/10.1371/journal.pone.0079694, 2013b.
Geyer, K. M., Kyker-Snowman, E., Grandy, A. S., and Frey, S. D.: Microbial
carbon use efficiency: accounting for population, community, and
ecosystem-scale controls over the fate of metabolized organic matter,
Biogeochemistry, 127, 173–188, https://doi.org/10.1007/s10533-016-0191-y, 2016.
Gifford, R. M.: Whole plant respiration and photosynthesis of wheat under
increased CO2 concentration and temperature: Long-term vs short-term
distinctions for modelling, Glob. Change Biol., 1, 385–396,
https://doi.org/10.1111/j.1365-2486.1995.tb00037.x, 1995.
Gifford, R. M.: Plant respiration in productivity models: conceptualisation,
representation and issues for global terrestrial carbon-cycle research,
Funct. Plant Biol., 30, 171–186, https://doi.org/10.1071/fp02083, 2003.
Golley, F. B.: Energy values of ecological materials, Ecology, 42, 581–584,
https://doi.org/10.2307/1932247, 1961.
Grossart, H. P. and Ploug, H.: Microbial degradation of organic carbon and
nitrogen on diatom aggregates, Limnol. Oceanogr., 46, 267–277,
https://doi.org/10.4319/lo.2001.46.2.0267, 2001.
Hagerty, S. B., van Groenigen, K. J., Allison, S. D., Hungate, B. A.,
Schwartz, E., Koch, G. W., Kolka, R. K., and Dijkstra, P.: Accelerated
microbial turnover but constant growth efficiency with warming in soil,
Nat. Clim. Change, 4, 903–906, https://doi.org/10.1038/nclimate2361, 2014.
Hedges, J. I., Hu, F. S., Devol, A. H., Hartnett, H. E., Tsamakis, E., and
Keil, R. G.: Sedimentary organic matter preservation: A test for selective
degradation under oxic conditions, Am. J. Sci., 299,
529–555, https://doi.org/10.2475/ajs.299.7-9.529, 1999.
Hessen, D. O., Agren, G. I., Anderson, T. R., Elser, J. J., and De Ruiter,
P. C.: Carbon, sequestration in ecosystems: The role of stoichiometry,
Ecology, 85, 1179–1192, 2004.
Hobbie, E. A.: Carbon allocation to ectomycorrhizal fungi correlates with
belowground allocation in culture studies, Ecology, 87, 563–569,
https://doi.org/10.1890/05-0755, 2006.
Hoellein, T. J., Bruesewitz, D. A., and Richardson, D. C.: Revisiting Odum
(1956): A synthesis of aquatic ecosystem metabolism, Limnol.
Oceanogr., 58, 2089–2100, https://doi.org/10.4319/lo.2013.58.6.2089, 2013.
Huntingford, C., Atkin, O. K., Martinez-de la Torre, A., Mercado, L. M.,
Heskel, M. A., Harper, A. B., Bloomfield, K. J., O'Sullivan, O. S., Reich, P.
B., Wythers, K. R., Butler, E. E., Chen, M., Griffin, K. L., Meir, P.,
Tjoelker, M. G., Turnbull, M. H., Sitch, S., Wiltshire, A., and Malhi, Y.:
Implications of improved representations of plant respiration in a changing
climate, Nat. Commun., 8, 1602, https://doi.org/10.1038/s41467-017-01774-z, 2017.
Hutsch, B. W., Augustin, J., and Merbach, W.: Plant rhizodeposition – an
important source for carbon turnover in soils, J. Plant Nutr.
Soil Sci., 165,
397–407, 2002.
Jiao, N., Robinson, C., Azam, F., Thomas, H., Baltar, F., Dang, H.,
Hardman-Mountford, N. J., Johnson, M., Kirchman, D. L., Koch, B. P.,
Legendre, L., Li, C., Liu, J., Luo, T., Luo, Y. W., Mitra, A., Romanou, A.,
Tang, K., Wang, X., Zhang, C., and Zhang, R.: Mechanisms of microbial carbon
sequestration in the ocean – future research directions, Biogeosciences, 11,
5285–5306, https://doi.org/10.5194/bg-11-5285-2014, 2014.
Kaiser, K. and Kalbitz, K.: Cycling downwards – dissolved organic matter in
soils, Soil Biol. Biochem., 52, 29–32,
https://doi.org/10.1016/j.soilbio.2012.04.002, 2012.
Kallenbach, C. M., Frey, S. D., and Grandy, A. S.: Direct evidence for
microbial-derived soil organic matter formation and its ecophysiological
controls, Nat. Commun., 7, 13630, https://doi.org/10.1038/ncomms13630, 2016.
Krausmann, F., Erb, K. H., Gingrich, S., Haberl, H., Bondeau, A., Gaube, V.,
Lauk, C., Plutzar, C., and Searchinger, T. D.: Global human appropriation of
net primary production doubled in the 20th century, P.
Nat. Acad. Sci. USA, 110,
10324–10329, https://doi.org/10.1073/pnas.1211349110, 2013.
Kyaschenko, J., Clemmensen, K. E., Karltun, E., and Lindahl, B. D.:
Below-ground organic matter accumulation along a boreal forest fertility
gradient relates to guild interaction within fungal communities, Ecol.
Lett., 20, 1546–1555, https://doi.org/10.1111/ele.12862, 2017.
Ladd, J. N., Jocteurmonrozier, L., and Amato, M.: Carbon turnover and
nitrogen transformations in an alfisol and vertisol amended with
14C[U]glucose and 15N ammonium sulfate, Soil Biol.
Biochem., 24, 359–371, https://doi.org/10.1016/0038-0717(92)90196-5, 1992.
Lipson, D. A.: The complex relationship between microbial growth rate and
yield and its implications for ecosystem processes, Front. Microbiol., 6,
615, https://doi.org/10.3389/fmicb.2015.00615, 2015.
Luyssaert, S., Inglima, I., Jung, M., Richardson, A. D., Reichstein, M.,
Papale, D., Piao, S. L., Schulzes, E. D., Wingate, L., Matteucci, G.,
Aragao, L., Aubinet, M., Beers, C., Bernhofer, C., Black, K. G., Bonal, D.,
Bonnefond, J. M., Chambers, J., Ciais, P., Cook, B., Davis, K. J., Dolman,
A. J., Gielen, B., Goulden, M., Grace, J., Granier, A., Grelle, A., Griffis,
T., Grunwald, T., Guidolotti, G., Hanson, P. J., Harding, R., Hollinger, D.
Y., Hutyra, L. R., Kolar, P., Kruijt, B., Kutsch, W., Lagergren, F.,
Laurila, T., Law, B. E., Le Maire, G., Lindroth, A., Loustau, D., Malhi, Y.,
Mateus, J., Migliavacca, M., Misson, L., Montagnani, L., Moncrieff, J.,
Moors, E., Munger, J. W., Nikinmaa, E., Ollinger, S. V., Pita, G., Rebmann,
C., Roupsard, O., Saigusa, N., Sanz, M. J., Seufert, G., Sierra, C., Smith,
M. L., Tang, J., Valentini, R., Vesala, T., and Janssens, I. A.: CO2 balance
of boreal, temperate, and tropical forests derived from a global database,
Glob. Change Biol., 13, 2509–2537, https://doi.org/10.1111/j.1365-2486.2007.01439.x,
2007.
Luyssaert, S., Inglima, I., and Jung, M.: Global Forest Ecosystem Structure
and Function Data For Carbon Balance Research, ORNL DAAC, Oak Ridge,
Tennessee, USA, 2009.
Manzoni, S., Trofymow, J. A., Jackson, R. B., and Porporato, A.:
Stoichiometric controls dynamics on carbon, nitrogen, and phosphorus in
decomposing litter, Ecol. Monogr., 80, 89–106, 2010.
Manzoni, S., Taylor, P. G., Richter, A., Porporato, A., and Ågren, G.
I.: Environmental and stoichiometric controls on microbial carbon-use
efficiency in soils, New Phytol., 196, 79–91,
https://doi.org/10.1111/j.1469-8137.2012.04225.x, 2012.
Manzoni, S., Čapek, P., Mooshammer, M., Lindahl, B. D., Richter, A., and
Šantrůčková, H.: Optimal metabolic regulation along resource
stoichiometry gradients, Ecol. Lett., 20, 1182–1191, https://doi.org/10.1111/ele.12815,
2017.
Manzoni, S., Čapek, P., Porada, P., Thurner, M., Winterdahl, M., Beer,
C., Brüchert, V., Frouz, J., Herrmann, A. M., Lindahl, B. D., Lyon, S.
W., Šantručková, H., Vico, G., and Way, D.: Carbon use efficiency
from organisms to ecosystems, Bolin Centre Database,
https://bolin.su.se/data/Manzoni-2018, last access: 3 October 3 2018.
MathWorks, T.: Natick, MA, 2011.
McNaughton, S. J., Oesterheld, M., Frank, D. A., and Williams, K. J.:
Ecosystem-Level Patterns of Primary Productivity and Herbivory in
Terrestrial Habitats, Nature, 341, 142–144, 1989.
Mendonça, R., Müller, R. A., Clow, D., Verpoorter, C., Raymond, P.,
Tranvik, L. J., and Sobek, S.: Organic carbon burial in global lakes and
reservoirs, Nat. Commun., 8, 1694, https://doi.org/10.1038/s41467-017-01789-6,
2017.
Middelboe, M. and Sondergaard, M.: Bacterioplankton Growth Yield: Seasonal
Variations and Coupling to Substrate Lability and beta-Glucosidase Activity,
Appl. Environ. Microbiol., 59, 3916–3921, 1993.
Monod, J.: The growth of bacterial cultures, Ann. Rev. Microbiol.,
3, 371–394, https://doi.org/10.1146/annurev.mi.03.100149.002103, 1949.
Öquist, M. G., Erhagen, B., Haei, M., Sparrman, T., Ilstedt, U.,
Schleucher, J., and Nilsson, M. B.: The effect of temperature and substrate
quality on the carbon use efficiency of saprotrophic decomposition, Plant
Soil, 414, 113–125, https://doi.org/10.1007/s11104-016-3104-x, 2017.
Payne, W. J.: Energy Yields and Growth of Heterotrophs, Ann. Rev. Microbiol.,
24, 17–52, 1970.
Russell, J. B. and Cook, G. M.: Energetics of bacterial-growth - Balance of
anabolic and catabolic reactions, Microbiol. Rev., 59, 48–62, 1995.
Šantrůčková, H., Picek, T., Tykva, R., Šimek, M., and
Pavlů, B.: Short-term partitioning of C-14-U-glucose in the soil
microbial pool under varied aeration status, Biol. Fert. Soils,
40, 386–392, https://doi.org/10.1007/s00374-004-0790-y, 2004.
Schimel, J. P. and Weintraub, M. N.: The implications of exoenzyme activity
on microbial carbon and nitrogen limitation in soil: a theoretical model,
Soil Biol. Biochem., 35, 549–563, 2003.
Schmidt, M. W. I., Torn, M. S., Abiven, S., Dittmar, T., Guggenberger, G.,
Janssens, I. A., Kleber, M., Kogel-Knabner, I., Lehmann, J., Manning, D. A.
C., Nannipieri, P., Rasse, D. P., Weiner, S., and Trumbore, S. E.:
Persistence of soil organic matter as an ecosystem property, Nature, 478,
49–56, 2011.
Seiter, K., Hensen, C., and Zabel, M.: Benthic carbon mineralization on a
global scale, Global Biogeochem. Cy., 19, GB1010, https://doi.org/10.1029/2004gb002225,
2005.
Sinsabaugh, R. L., Manzoni, S., Moorhead, D. L., and Richter, A.: Carbon use
efficiency of microbial communities: stoichiometry, methodology and
modelling, Ecol. Lett., 16, 930–939, https://doi.org/10.1111/ele.12113, 2013.
Sinsabaugh, R. L., Shah, J. J. F., Findlay, S. G., Kuehn, K. A., and
Moorhead, D. L.: Scaling microbial biomass, metabolism and resource supply,
Biogeochemistry, 122, 175–190, https://doi.org/10.1007/s10533-014-0058-z, 2015.
Sinsabaugh, R. L., Moorhead, D. L., Xu, X., and Litvak, M. E.: Plant,
microbial and ecosystem carbon use efficiencies interact to stabilize
microbial growth as a fraction of gross primary production, New Phytol., 47,
777–780, https://doi.org/10.1111/nph.14485, 2017.
Six, J., Frey, S. D., Thiet, R. K., and Batten, K. M.: Bacterial and fungal
contributions to carbon sequestration in agroecosystems, Soil Sci.
Soc. Am. J., 70, 555–569, https://doi.org/10.2136/sssaj2004.0347, 2006.
Smith, N. G., Malyshev, S. L., Shevliakova, E., Kattge, J., and Dukes, J. S.:
Foliar temperature acclimation reduces simulated carbon sensitivity to
climate, Nat. Clim. Change, 6, 407–411, https://doi.org/10.1038/nclimate2878, 2016.
Sterner, R. W. and Elser, J. J.: Ecological stoichiometry. The biology of
elements from molecules to the biosphere, Princeton University Press,
Princeton and Oxford, 439 pp., 2002.
Stewart, C. E., Paustian, K., Conant, R. T., Plante, A. F., and Six, J.:
Soil carbon saturation: concept, evidence and evaluation, Biogeochemistry,
86, 19–31, 2007.
Thiet, R. K., Frey, S. D., and Six, J.: Do growth yield efficiencies differ
between soil microbial communities differing in fungal: bacterial ratios?
Reality check and methodological issues, Soil Biol. Biochem., 38,
837–844, 2006.
Thornley, J. H. M. and Cannell, M. G. R.: Modelling the components of plant
respiration: Representation and realism, Ann. Bot., 85, 55–67, 2000.
Toljander, Y. K., Lindahl, B. D., Holmer, L., and Hogberg, N. O. S.:
Environmental fluctuations facilitate species co-existence and increase
decomposition in communities of wood decay fungi, Oecologia, 148, 625–631,
https://doi.org/10.1007/s00442-006-0406-3, 2006.
Unkovich, M., Baldock, J., and Forbes, M.: Variability in harvest index of
grain crops and potential significance for carbon accounting: examples from
Australian agriculture, edited by:
Sparks, D. L., Adv. Agron., 105, 173–219, 2010.
van Bodegom, P.: Microbial maintenance: A critical review on its
quantification, Microb. Ecol., 53, 513–523, https://doi.org/10.1007/s00248-006-9049-5,
2007.
Vicca, S., Luyssaert, S., Penuelas, J., Campioli, M., Chapin, F. S., III,
Ciais, P., Heinemeyer, A., Hogberg, P., Kutsch, W. L., Law, B. E., Malhi,
Y., Papale, D., Piao, S. L., Reichstein, M., Schulze, E. D., and Janssens,
I. A.: Fertile forests produce biomass more efficiently, Ecol. Lett.,
15, 520–526, https://doi.org/10.1111/j.1461-0248.2012.01775.x, 2012.
Vogel, S.: Exposing Life's Limits with Dimensionless Numbers, Physics Today,
51, 22–27, 1998.
Wang, Z. Q., Ji, M. F., Deng, J. M., Milne, R. I., Ran, J. Z., Zhang, Q.,
Fan, Z. X., Zhang, X. W., Li, J. T., Huang, H., Cheng, D. L., and Niklas, K.
J.: A theoretical framework for whole-plant carbon assimilation efficiency
based on metabolic scaling theory: a test case using Picea seedlings, Tree
Physiol., 35, 599–607, https://doi.org/10.1093/treephys/tpv030, 2015.
Yamaguchi, J.: Respiration and the growth efficiency in relation to crop
productivity, Journal of the Faculty of Agriculture, Hokkaido University,
59, 59–129, 1978.
Short summary
Carbon fixed by plants and phytoplankton through photosynthesis is ultimately stored in soils and sediments or released to the atmosphere during decomposition of dead biomass. Carbon-use efficiency is a useful metric to quantify the fate of carbon – higher efficiency means higher storage and lower release to the atmosphere. Here we summarize many definitions of carbon-use efficiency and study how this metric changes from organisms to ecosystems and from terrestrial to aquatic environments.
Carbon fixed by plants and phytoplankton through photosynthesis is ultimately stored in soils...
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