Articles | Volume 18, issue 24
Biogeosciences, 18, 6501–6516, 2021
https://doi.org/10.5194/bg-18-6501-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Biogeosciences, 18, 6501–6516, 2021
https://doi.org/10.5194/bg-18-6501-2021
© Author(s) 2021. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
17 Dec 2021
Research article
| 17 Dec 2021
Quantifying functional consequences of habitat degradation on a Caribbean coral reef
Alice E. Webb et al.
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Siham de Goeyse, Alice E. Webb, Gert-Jan Reichart, and Lennart J. de Nooijer
Biogeosciences, 18, 393–401, https://doi.org/10.5194/bg-18-393-2021, https://doi.org/10.5194/bg-18-393-2021, 2021
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Foraminifera are calcifying organisms that play a role in the marine inorganic-carbon cycle and are widely used to reconstruct paleoclimates. However, the fundamental process by which they calcify remains essentially unknown. Here we use inhibitors to show that an enzyme is speeding up the conversion between bicarbonate and CO2. This helps the foraminifera acquire sufficient carbon for calcification and might aid their tolerance to elevated CO2 level.
Niels J. de Winter, Daniel Killam, Lukas Fröhlich, Lennart de Nooijer, Wim Boer, Bernd R. Schöne, Julien Thébault, and Gert-Jan Reichart
EGUsphere, https://doi.org/10.5194/egusphere-2022-576, https://doi.org/10.5194/egusphere-2022-576, 2022
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Mollusk shells are valuable recorders of climate and environmental changes of the past down to a daily resolution. To explore this potential, we measured changes in the composition of shells of two types of bivalves recorded at the hourly scale: The king scallop Pecten maximus, and giant clams (Tridacna) that have engage in photosymbiosis. We find that photosymbiosis produces more day-night fluctuation in shell chemistry, but that most of the variation is not periodic, perhaps recording weather.
Joost Frieling, Linda van Roij, Iris Kleij, Gert-Jan Reichart, and Appy Sluijs
Biogeosciences Discuss., https://doi.org/10.5194/bg-2022-118, https://doi.org/10.5194/bg-2022-118, 2022
Preprint under review for BG
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We present a first species specific evaluation of marine core-top dinoflagellate cyst carbon isotope fractionation (εp) in order to establish natural pCO2 dependency and explore its geological deep-time paleo-pCO2 proxy potential. We build a first version of the paleo-CO2 proxy based on Operculodinium centrocarpum. εp differs between species and is controlled by pCO2 and nutrients. Our results illustrate the value of δ13C analyses on single micrometer-scale sedimentary organic carbon particles.
Justin C. Tiano, Jochen Depestele, Gert Van Hoey, João Fernandes, Pieter van Rijswijk, and Karline Soetaert
Biogeosciences, 19, 2583–2598, https://doi.org/10.5194/bg-19-2583-2022, https://doi.org/10.5194/bg-19-2583-2022, 2022
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This study gives an assessment of bottom trawling on physical, chemical, and biological characteristics in a location known for its strong currents and variable habitats. Although trawl gears only removed the top 1 cm of the seabed surface, impacts on reef-building tubeworms significantly decreased carbon and nutrient cycling. Lighter trawls slightly reduced the impact on fauna and nutrients. Tubeworms were strongly linked to biogeochemical and faunal aspects before but not after trawling.
Carolien M. H. van der Weijst, Josse Winkelhorst, Wesley de Nooijer, Anna von der Heydt, Gert-Jan Reichart, Francesca Sangiorgi, and Appy Sluijs
Clim. Past, 18, 961–973, https://doi.org/10.5194/cp-18-961-2022, https://doi.org/10.5194/cp-18-961-2022, 2022
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A hypothesized link between Pliocene (5.3–2.5 million years ago) global climate and tropical thermocline depth is currently only backed up by data from the Pacific Ocean. In our paper, we present temperature, salinity, and thermocline records from the tropical Atlantic Ocean. Surprisingly, the Pliocene thermocline evolution was remarkably different in the Atlantic and Pacific. We need to reevaluate the mechanisms that drive thermocline depth, and how these are tied to global climate change.
Stanley Ifeanyi Nmor, Eric Viollier, Lucie Pastor, Bruno Lansard, Christophe Rabouille, and Karline Soetaert
Geosci. Model Dev. Discuss., https://doi.org/10.5194/gmd-2022-84, https://doi.org/10.5194/gmd-2022-84, 2022
Revised manuscript under review for GMD
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The coastal marine environment serves as a transition zone in the land-ocean continuum and is susceptible to episodic phenomena such as flash floods, which cause massive organic matter deposition. Here, we present a model of sediment early diagenesis that explicitly describes this type of deposition while also incorporating unique flood deposit characteristics. This model can be used to investigate the temporal evolution of marine sediments following abrupt changes in environmental conditions.
Rick Hennekam, Katharine M. Grant, Eelco J. Rohling, Rik Tjallingii, David Heslop, Andrew P. Roberts, Lucas J. Lourens, and Gert-Jan Reichart
Clim. Past Discuss., https://doi.org/10.5194/cp-2022-14, https://doi.org/10.5194/cp-2022-14, 2022
Preprint under review for CP
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The ratio of titanium to aluminum (Ti/Al) is an established way to reconstruct North African climate in eastern Mediterranean Sea sediments. We here demonstrate how to obtain reliable Ti/Al data using an efficient scanning method that allows rapid acquisition of long climate records at low expense. Using this method, we reconstruct a 3 million-year North African climate record. African environmental variability was paced predominantly by low-latitude insolation from 3–1.2 million years ago.
Matthew P. Humphreys, Erik H. Meesters, Henk de Haas, Szabina Karancz, Louise Delaigue, Karel Bakker, Gerard Duineveld, Siham de Goeyse, Andreas F. Haas, Furu Mienis, Sharyn Ossebaar, and Fleur C. van Duyl
Biogeosciences, 19, 347–358, https://doi.org/10.5194/bg-19-347-2022, https://doi.org/10.5194/bg-19-347-2022, 2022
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A series of submarine sinkholes were recently discovered on Luymes Bank, part of Saba Bank, a carbonate platform in the Caribbean Netherlands. Here, we investigate the waters inside these sinkholes for the first time. One of the sinkholes contained a body of dense, low-oxygen and low-pH water, which we call the
acid lake. We use measurements of seawater chemistry to work out what processes were responsible for forming the acid lake and discuss the consequences for the carbonate platform.
Siv K. Lauvset, Nico Lange, Toste Tanhua, Henry C. Bittig, Are Olsen, Alex Kozyr, Marta Álvarez, Susan Becker, Peter J. Brown, Brendan R. Carter, Leticia Cotrim da Cunha, Richard A. Feely, Steven van Heuven, Mario Hoppema, Masao Ishii, Emil Jeansson, Sara Jutterström, Steve D. Jones, Maren K. Karlsen, Claire Lo Monaco, Patrick Michaelis, Akihiko Murata, Fiz F. Pérez, Benjamin Pfeil, Carsten Schirnick, Reiner Steinfeldt, Toru Suzuki, Bronte Tilbrook, Anton Velo, Rik Wanninkhof, Ryan J. Woosley, and Robert M. Key
Earth Syst. Sci. Data, 13, 5565–5589, https://doi.org/10.5194/essd-13-5565-2021, https://doi.org/10.5194/essd-13-5565-2021, 2021
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GLODAP is a data product for ocean inorganic carbon and related biogeochemical variables measured by the chemical analysis of water bottle samples from scientific cruises. GLODAPv2.2021 is the third update of GLODAPv2 from 2016. The data that are included have been subjected to extensive quality control, including systematic evaluation of measurement biases. This version contains data from 989 hydrographic cruises covering the world's oceans from 1972 to 2020.
Chiu H. Cheng, Jaco C. de Smit, Greg S. Fivash, Suzanne J. M. H. Hulscher, Bas W. Borsje, and Karline Soetaert
Earth Surf. Dynam., 9, 1335–1346, https://doi.org/10.5194/esurf-9-1335-2021, https://doi.org/10.5194/esurf-9-1335-2021, 2021
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Shells are biogenic particles that are widespread throughout natural sandy environments and can affect the bed roughness and seabed erodibility. As studies are presently lacking, we experimentally measured ripple formation and migration using natural sand with increasing volumes of shell material under unidirectional flow in a racetrack flume. We show that shells expedite the onset of sediment transport, reduce ripple dimensions and slow their migration rate.
Carolien M. H. van der Weijst, Koen J. van der Laan, Francien Peterse, Gert-Jan Reichart, Francesca Sangiorgi, Stefan Schouten, Tjerk J. T. Veenstra, and Appy Sluijs
Clim. Past Discuss., https://doi.org/10.5194/cp-2021-92, https://doi.org/10.5194/cp-2021-92, 2021
Revised manuscript accepted for CP
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The TEX86 proxy is often used by paleoceanographers to reconstruct past sea-surface temperatures. However, the origin of the TEX86 signal in marine sediments has been debated since the proxy was first proposed. In our paper, we show that TEX86 carries a mixed sea-surface and subsurface temperature signal, and should be calibrated accordingly. Using our 15 million year record, we subsequently show how a TEX86 subsurface temperature record can be used to inform us on past sea-surface temperatures.
Indah Ardiningsih, Kyyas Seyitmuhammedov, Sylvia G. Sander, Claudine H. Stirling, Gert-Jan Reichart, Kevin R. Arrigo, Loes J. A. Gerringa, and Rob Middag
Biogeosciences, 18, 4587–4601, https://doi.org/10.5194/bg-18-4587-2021, https://doi.org/10.5194/bg-18-4587-2021, 2021
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Organic Fe speciation is investigated along a natural gradient of the western Antarctic Peninsula from an ice-covered shelf to the open ocean. The two major fronts in the region affect the distribution of ligands. The excess ligands not bound to dissolved Fe (DFe) comprised up to 80 % of the total ligand concentrations, implying the potential to solubilize additional Fe input. The ligands on the shelf can increase the DFe residence time and fuel local primary production upon ice melt.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Adriaan D. Rijnsdorp, and Karline Soetaert
Biogeosciences, 18, 2539–2557, https://doi.org/10.5194/bg-18-2539-2021, https://doi.org/10.5194/bg-18-2539-2021, 2021
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Bottom trawling alters benthic mineralization: the recycling of organic material (OM) to free nutrients. To better understand how this occurs, trawling events were added to a model of seafloor OM recycling. Results show that bottom trawling reduces OM and free nutrients in sediments through direct removal thereof and of fauna which transport OM to deeper sediment layers protected from fishing. Our results support temporospatial trawl restrictions to allow key sediment functions to recover.
Ove H. Meisel, Joshua F. Dean, Jorien E. Vonk, Lukas Wacker, Gert-Jan Reichart, and Han Dolman
Biogeosciences, 18, 2241–2258, https://doi.org/10.5194/bg-18-2241-2021, https://doi.org/10.5194/bg-18-2241-2021, 2021
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Arctic permafrost lakes form thaw bulbs of unfrozen soil (taliks) beneath them where carbon degradation and greenhouse gas production are increased. We analyzed the stable carbon isotopes of Alaskan talik sediments and their porewater dissolved organic carbon and found that the top layers of these taliks are likely more actively degraded than the deeper layers. This in turn implies that these top layers are likely also more potent greenhouse gas producers than the underlying deeper layers.
Delphine Dissard, Gert Jan Reichart, Christophe Menkes, Morgan Mangeas, Stephan Frickenhaus, and Jelle Bijma
Biogeosciences, 18, 423–439, https://doi.org/10.5194/bg-18-423-2021, https://doi.org/10.5194/bg-18-423-2021, 2021
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Results from a data set acquired from living foraminifera T. sacculifer collected from surface waters are presented, allowing us to establish a new Mg/Ca–Sr/Ca–temperature equation improving temperature reconstructions. When combining equations, δ18Ow can be reconstructed with a precision of ± 0.5 ‰, while successive reconstructions involving Mg/Ca and δ18Oc preclude salinity reconstruction with a precision better than ± 1.69. A new direct linear fit to reconstruct salinity could be established.
Siham de Goeyse, Alice E. Webb, Gert-Jan Reichart, and Lennart J. de Nooijer
Biogeosciences, 18, 393–401, https://doi.org/10.5194/bg-18-393-2021, https://doi.org/10.5194/bg-18-393-2021, 2021
Short summary
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Foraminifera are calcifying organisms that play a role in the marine inorganic-carbon cycle and are widely used to reconstruct paleoclimates. However, the fundamental process by which they calcify remains essentially unknown. Here we use inhibitors to show that an enzyme is speeding up the conversion between bicarbonate and CO2. This helps the foraminifera acquire sufficient carbon for calcification and might aid their tolerance to elevated CO2 level.
Are Olsen, Nico Lange, Robert M. Key, Toste Tanhua, Henry C. Bittig, Alex Kozyr, Marta Álvarez, Kumiko Azetsu-Scott, Susan Becker, Peter J. Brown, Brendan R. Carter, Leticia Cotrim da Cunha, Richard A. Feely, Steven van Heuven, Mario Hoppema, Masao Ishii, Emil Jeansson, Sara Jutterström, Camilla S. Landa, Siv K. Lauvset, Patrick Michaelis, Akihiko Murata, Fiz F. Pérez, Benjamin Pfeil, Carsten Schirnick, Reiner Steinfeldt, Toru Suzuki, Bronte Tilbrook, Anton Velo, Rik Wanninkhof, and Ryan J. Woosley
Earth Syst. Sci. Data, 12, 3653–3678, https://doi.org/10.5194/essd-12-3653-2020, https://doi.org/10.5194/essd-12-3653-2020, 2020
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GLODAP is a data product for ocean inorganic carbon and related biogeochemical variables measured by chemical analysis of water bottle samples at scientific cruises. GLODAPv2.2020 is the second update of GLODAPv2 from 2016. The data that are included have been subjected to extensive quality control, including systematic evaluation of measurement biases. This version contains data from 946 hydrographic cruises covering the world's oceans from 1972 to 2019.
Linda K. Dämmer, Lennart de Nooijer, Erik van Sebille, Jan G. Haak, and Gert-Jan Reichart
Clim. Past, 16, 2401–2414, https://doi.org/10.5194/cp-16-2401-2020, https://doi.org/10.5194/cp-16-2401-2020, 2020
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The compositions of foraminifera shells often vary with environmental parameters such as temperature or salinity; thus, they can be used as proxies for these environmental variables. Often a single proxy is influenced by more than one parameter. Here, we show that while salinity impacts shell Na / Ca, temperature has no effect. We also show that the combination of different proxies (Mg / Ca and δ18O) to reconstruct salinity does not seem to work as previously thought.
Anne Roepert, Lubos Polerecky, Esmee Geerken, Gert-Jan Reichart, and Jack J. Middelburg
Biogeosciences, 17, 4727–4743, https://doi.org/10.5194/bg-17-4727-2020, https://doi.org/10.5194/bg-17-4727-2020, 2020
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We investigated, for the first time, the spatial distribution of chlorine and fluorine in the shell walls of four benthic foraminifera species: Ammonia tepida, Amphistegina lessonii, Archaias angulatus, and Sorites marginalis. Cross sections of specimens were imaged using nanoSIMS. The distribution of Cl and F was co-located with organics in the rotaliids and rather homogeneously distributed in miliolids. We suggest that the incorporation is governed by the biomineralization pathway.
Margot J. Cramwinckel, Lineke Woelders, Emiel P. Huurdeman, Francien Peterse, Stephen J. Gallagher, Jörg Pross, Catherine E. Burgess, Gert-Jan Reichart, Appy Sluijs, and Peter K. Bijl
Clim. Past, 16, 1667–1689, https://doi.org/10.5194/cp-16-1667-2020, https://doi.org/10.5194/cp-16-1667-2020, 2020
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Phases of past transient warming can be used as a test bed to study the environmental response to climate change independent of tectonic change. Using fossil plankton and organic molecules, here we reconstruct surface ocean temperature and circulation in and around the Tasman Gateway during a warming phase 40 million years ago termed the Middle Eocene Climatic Optimum. We find that plankton assemblages track ocean circulation patterns, with superimposed variability being related to temperature.
Carolien Maria Hendrina van der Weijst, Josse Winkelhorst, Anna von der Heydt, Gert-Jan Reichart, Francesca Sangiorgi, and Appy Sluijs
Clim. Past Discuss., https://doi.org/10.5194/cp-2020-105, https://doi.org/10.5194/cp-2020-105, 2020
Manuscript not accepted for further review
Long Jiang, Theo Gerkema, Jacco C. Kromkamp, Daphne van der Wal, Pedro Manuel Carrasco De La Cruz, and Karline Soetaert
Biogeosciences, 17, 4135–4152, https://doi.org/10.5194/bg-17-4135-2020, https://doi.org/10.5194/bg-17-4135-2020, 2020
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A seaward increasing chlorophyll-a gradient is observed during the spring bloom in a Dutch tidal bay. Biophysical model runs indicate the roles of bivalve grazing and tidal import in shaping the gradient. Five common spatial phytoplankton patterns are summarized in global estuarine–coastal ecosystems: seaward increasing, seaward decreasing, concave with a chlorophyll maximum, weak spatial gradients, and irregular patterns.
Sabine Haalboom, David M. Price, Furu Mienis, Judith D. L. van Bleijswijk, Henko C. de Stigter, Harry J. Witte, Gert-Jan Reichart, and Gerard C. A. Duineveld
Biogeosciences, 17, 2499–2519, https://doi.org/10.5194/bg-17-2499-2020, https://doi.org/10.5194/bg-17-2499-2020, 2020
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Mineral mining in deep-sea hydrothermal settings will lead to the formation of plumes of fine-grained, chemically reactive, suspended matter. Understanding how natural hydrothermal plumes evolve as they disperse from their source, and how they affect their surrounding environment, may help in characterising the behaviour of the diluted part of mining plumes. The natural plume provided a heterogeneous, geochemically enriched habitat conducive to the development of a distinct microbial ecology.
Emil De Borger, Justin Tiano, Ulrike Braeckman, Tom Ysebaert, and Karline Soetaert
Biogeosciences, 17, 1701–1715, https://doi.org/10.5194/bg-17-1701-2020, https://doi.org/10.5194/bg-17-1701-2020, 2020
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By applying a novel technique to quantify organism-induced sediment–water column fluid exchange (bioirrigation), we show that organisms in subtidal (permanently submerged) areas have similar bioirrigation rates as those that inhabit intertidal areas (not permanently submerged), but organisms in the latter irrigate deeper burrows in this study. Our results expand on traditional methods to quantify bioirrigation rates and broaden the pool of field measurements of bioirrigation rates.
Long Jiang, Theo Gerkema, Déborah Idier, Aimée B. A. Slangen, and Karline Soetaert
Ocean Sci., 16, 307–321, https://doi.org/10.5194/os-16-307-2020, https://doi.org/10.5194/os-16-307-2020, 2020
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A model downscaling approach is used to investigate the effects of sea-level rise (SLR) on local tides. Results indicate that SLR induces larger increases in tidal amplitude and stronger nonlinear tidal distortion in the bay compared to the adjacent shelf sea. SLR can also change shallow-water tidal asymmetry and influence the direction and magnitude of bed-load sediment transport. The model downscaling approach is widely applicable for local SLR projections in estuaries and coastal bays.
Gabriel J. Bowen, Brenden Fischer-Femal, Gert-Jan Reichart, Appy Sluijs, and Caroline H. Lear
Clim. Past, 16, 65–78, https://doi.org/10.5194/cp-16-65-2020, https://doi.org/10.5194/cp-16-65-2020, 2020
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Past climate conditions are reconstructed using indirect and incomplete geological, biological, and geochemical proxy data. We propose that such reconstructions are best obtained by statistical inversion of hierarchical models that represent how multi–proxy observations and calibration data are produced by variation of environmental conditions in time and/or space. These methods extract new information from traditional proxies and provide robust, comprehensive estimates of uncertainty.
Ulrike Hanz, Claudia Wienberg, Dierk Hebbeln, Gerard Duineveld, Marc Lavaleye, Katriina Juva, Wolf-Christian Dullo, André Freiwald, Leonardo Tamborrino, Gert-Jan Reichart, Sascha Flögel, and Furu Mienis
Biogeosciences, 16, 4337–4356, https://doi.org/10.5194/bg-16-4337-2019, https://doi.org/10.5194/bg-16-4337-2019, 2019
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Along the Namibian and Angolan margins, low oxygen conditions do not meet environmental ranges for cold–water corals and hence are expected to be unsuitable habitats. Environmental conditions show that tidal movements deliver water with more oxygen and high–quality organic matter, suggesting that corals compensate unfavorable conditions with availability of food. With the expected expansion of oxygen minimum zones in the future, this study provides an example how ecosystems cope with extremes.
Are Olsen, Nico Lange, Robert M. Key, Toste Tanhua, Marta Álvarez, Susan Becker, Henry C. Bittig, Brendan R. Carter, Leticia Cotrim da Cunha, Richard A. Feely, Steven van Heuven, Mario Hoppema, Masao Ishii, Emil Jeansson, Steve D. Jones, Sara Jutterström, Maren K. Karlsen, Alex Kozyr, Siv K. Lauvset, Claire Lo Monaco, Akihiko Murata, Fiz F. Pérez, Benjamin Pfeil, Carsten Schirnick, Reiner Steinfeldt, Toru Suzuki, Maciej Telszewski, Bronte Tilbrook, Anton Velo, and Rik Wanninkhof
Earth Syst. Sci. Data, 11, 1437–1461, https://doi.org/10.5194/essd-11-1437-2019, https://doi.org/10.5194/essd-11-1437-2019, 2019
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GLODAP is a data product for ocean inorganic carbon and related biogeochemical variables measured by chemical analysis of water bottle samples at scientific cruises. GLODAPv2.2019 is the first update of GLODAPv2 from 2016. The data that are included have been subjected to extensive quality control, including systematic evaluation of measurement biases. This version contains data from 840 hydrographic cruises covering the world's oceans from 1972 to 2017.
Daniel Broullón, Fiz F. Pérez, Antón Velo, Mario Hoppema, Are Olsen, Taro Takahashi, Robert M. Key, Toste Tanhua, Melchor González-Dávila, Emil Jeansson, Alex Kozyr, and Steven M. A. C. van Heuven
Earth Syst. Sci. Data, 11, 1109–1127, https://doi.org/10.5194/essd-11-1109-2019, https://doi.org/10.5194/essd-11-1109-2019, 2019
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In this work, we are contributing to the knowledge of the consequences of climate change in the ocean. We have focused on a variable related to this process: total alkalinity. We have designed a monthly climatology of total alkalinity using artificial intelligence techniques, that is, a representation of the average capacity of the ocean in the last decades to decelerate the consequences of climate change. The climatology is especially useful to infer the evolution of the ocean through models.
Inge van Dijk, Christine Barras, Lennart Jan de Nooijer, Aurélia Mouret, Esmee Geerken, Shai Oron, and Gert-Jan Reichart
Biogeosciences, 16, 2115–2130, https://doi.org/10.5194/bg-16-2115-2019, https://doi.org/10.5194/bg-16-2115-2019, 2019
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Systematics in the incorporation of different elements in shells of marine organisms can be used to test calcification models and thus processes involved in precipitation of calcium carbonates. On different scales, we observe a covariation of sulfur and magnesium incorporation in shells of foraminifera, which provides insights into the mechanics behind shell formation. The observed patterns imply that all species of foraminifera actively take up calcium and carbon in a coupled process.
Eveline M. Mezger, Lennart J. de Nooijer, Jacqueline Bertlich, Jelle Bijma, Dirk Nürnberg, and Gert-Jan Reichart
Biogeosciences, 16, 1147–1165, https://doi.org/10.5194/bg-16-1147-2019, https://doi.org/10.5194/bg-16-1147-2019, 2019
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Seawater salinity is an important factor when trying to reconstruct past ocean conditions. Foraminifera, small organisms living in the sea, produce shells that incorporate more Na at higher salinities. The accuracy of reconstructions depends on the fundamental understanding involved in the incorporation and preservation of the original Na of the shell. In this study, we unravel the Na composition of different components of the shell and describe the relative contribution of these components.
Shauna Ní Fhlaithearta, Christophe Fontanier, Frans Jorissen, Aurélia Mouret, Adriana Dueñas-Bohórquez, Pierre Anschutz, Mattias B. Fricker, Detlef Günther, Gert J. de Lange, and Gert-Jan Reichart
Biogeosciences, 15, 6315–6328, https://doi.org/10.5194/bg-15-6315-2018, https://doi.org/10.5194/bg-15-6315-2018, 2018
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This study looks at how foraminifera interact with their geochemical environment in the seabed. We focus on the incorporation of the trace metal manganese (Mn), with the aim of developing a tool to reconstruct past pore water profiles. Manganese concentrations in foraminifera are investigated relative to their ecological preferences and geochemical environment. This study demonstrates that Mn in foraminiferal tests is a promising tool to reconstruct oxygen conditions in the seabed.
Jacqueline Bertlich, Dirk Nürnberg, Ed C. Hathorne, Lennart J. de Nooijer, Eveline M. Mezger, Markus Kienast, Steffanie Nordhausen, Gert-Jan Reichart, Joachim Schönfeld, and Jelle Bijma
Biogeosciences, 15, 5991–6018, https://doi.org/10.5194/bg-15-5991-2018, https://doi.org/10.5194/bg-15-5991-2018, 2018
Esmee Geerken, Lennart Jan de Nooijer, Inge van Dijk, and Gert-Jan Reichart
Biogeosciences, 15, 2205–2218, https://doi.org/10.5194/bg-15-2205-2018, https://doi.org/10.5194/bg-15-2205-2018, 2018
Timme H. Donders, Niels A. G. M. van Helmond, Roel Verreussel, Dirk Munsterman, Johan ten Veen, Robert P. Speijer, Johan W. H. Weijers, Francesca Sangiorgi, Francien Peterse, Gert-Jan Reichart, Jaap S. Sinninghe Damsté, Lucas Lourens, Gesa Kuhlmann, and Henk Brinkhuis
Clim. Past, 14, 397–411, https://doi.org/10.5194/cp-14-397-2018, https://doi.org/10.5194/cp-14-397-2018, 2018
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The buildup and melting of ice during the early glaciations in the Northern Hemisphere, around 2.5 million years ago, were far shorter in duration than during the last million years. Based on molecular compounds and microfossils from sediments dating back to the early glaciations we show that the temperature on land and in the sea changed simultaneously and was a major factor in the ice buildup in the Northern Hemisphere. These data provide key insights into the dynamics of early glaciations.
Sayaka Yasunaka, Eko Siswanto, Are Olsen, Mario Hoppema, Eiji Watanabe, Agneta Fransson, Melissa Chierici, Akihiko Murata, Siv K. Lauvset, Rik Wanninkhof, Taro Takahashi, Naohiro Kosugi, Abdirahman M. Omar, Steven van Heuven, and Jeremy T. Mathis
Biogeosciences, 15, 1643–1661, https://doi.org/10.5194/bg-15-1643-2018, https://doi.org/10.5194/bg-15-1643-2018, 2018
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We estimated monthly air–sea CO2 fluxes in the Arctic Ocean and its adjacent seas north of 60° N from 1997 to 2014, after mapping pCO2 in the surface water using a self-organizing map technique. The addition of Chl a as a parameter enabled us to improve the estimate of pCO2 via better representation of its decline in spring. The uncertainty in the CO2 flux estimate was reduced, and a net annual Arctic Ocean CO2 uptake of 180 ± 130 Tg C y−1 was determined to be significant.
Corinne Le Quéré, Robbie M. Andrew, Pierre Friedlingstein, Stephen Sitch, Julia Pongratz, Andrew C. Manning, Jan Ivar Korsbakken, Glen P. Peters, Josep G. Canadell, Robert B. Jackson, Thomas A. Boden, Pieter P. Tans, Oliver D. Andrews, Vivek K. Arora, Dorothee C. E. Bakker, Leticia Barbero, Meike Becker, Richard A. Betts, Laurent Bopp, Frédéric Chevallier, Louise P. Chini, Philippe Ciais, Catherine E. Cosca, Jessica Cross, Kim Currie, Thomas Gasser, Ian Harris, Judith Hauck, Vanessa Haverd, Richard A. Houghton, Christopher W. Hunt, George Hurtt, Tatiana Ilyina, Atul K. Jain, Etsushi Kato, Markus Kautz, Ralph F. Keeling, Kees Klein Goldewijk, Arne Körtzinger, Peter Landschützer, Nathalie Lefèvre, Andrew Lenton, Sebastian Lienert, Ivan Lima, Danica Lombardozzi, Nicolas Metzl, Frank Millero, Pedro M. S. Monteiro, David R. Munro, Julia E. M. S. Nabel, Shin-ichiro Nakaoka, Yukihiro Nojiri, X. Antonio Padin, Anna Peregon, Benjamin Pfeil, Denis Pierrot, Benjamin Poulter, Gregor Rehder, Janet Reimer, Christian Rödenbeck, Jörg Schwinger, Roland Séférian, Ingunn Skjelvan, Benjamin D. Stocker, Hanqin Tian, Bronte Tilbrook, Francesco N. Tubiello, Ingrid T. van der Laan-Luijkx, Guido R. van der Werf, Steven van Heuven, Nicolas Viovy, Nicolas Vuichard, Anthony P. Walker, Andrew J. Watson, Andrew J. Wiltshire, Sönke Zaehle, and Dan Zhu
Earth Syst. Sci. Data, 10, 405–448, https://doi.org/10.5194/essd-10-405-2018, https://doi.org/10.5194/essd-10-405-2018, 2018
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The Global Carbon Budget 2017 describes data sets and methodology to quantify the five major components of the global carbon budget and their uncertainties. It is the 12th annual update and the 6th published in this journal.
Jassin Petersen, Christine Barras, Antoine Bézos, Carole La, Lennart J. de Nooijer, Filip J. R. Meysman, Aurélia Mouret, Caroline P. Slomp, and Frans J. Jorissen
Biogeosciences, 15, 331–348, https://doi.org/10.5194/bg-15-331-2018, https://doi.org/10.5194/bg-15-331-2018, 2018
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In Lake Grevelingen, a coastal ecosystem, foraminifera experience important temporal variations in oxygen concentration and in pore water manganese. The high resolution of LA-ICP-MS allows us to analyse the chambers of foraminiferal shells separately and to obtain signals from a series of calcification events. We estimate the variability in Mn/Ca observed within single shells due to biomineralization and show that a substantial part of the signal is related to environmental variability.
Joost Frieling, Gert-Jan Reichart, Jack J. Middelburg, Ursula Röhl, Thomas Westerhold, Steven M. Bohaty, and Appy Sluijs
Clim. Past, 14, 39–55, https://doi.org/10.5194/cp-14-39-2018, https://doi.org/10.5194/cp-14-39-2018, 2018
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Past periods of rapid global warming such as the Paleocene–Eocene Thermal Maximum are used to study biotic response to climate change. We show that very high peak PETM temperatures in the tropical Atlantic (~ 37 ºC) caused heat stress in several marine plankton groups. However, only slightly cooler temperatures afterwards allowed highly diverse plankton communities to bloom. This shows that tropical plankton communities may be susceptible to extreme warming, but may also recover rapidly.
Tom J. S. Cox, Justus E. E. van Beusekom, and Karline Soetaert
Biogeosciences, 14, 5271–5280, https://doi.org/10.5194/bg-14-5271-2017, https://doi.org/10.5194/bg-14-5271-2017, 2017
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Photosynthesis by phytoplankton is a key source of oxygen (O2) in aquatic systems. We have developed a mathematical technique to calculate the rate of photosynthesis from time series of O2. Additionally, the approach leads to a better understanding of the influence on O2 measurements of the tides in coasts and estuaries. The results are important for correctly interpreting the data that are gathered by a growing set of continuous O2 sensors that are deployed around the world.
Lennart J. de Nooijer, Anieke Brombacher, Antje Mewes, Gerald Langer, Gernot Nehrke, Jelle Bijma, and Gert-Jan Reichart
Biogeosciences, 14, 3387–3400, https://doi.org/10.5194/bg-14-3387-2017, https://doi.org/10.5194/bg-14-3387-2017, 2017
Karoliina A. Koho, Lennart J. de Nooijer, Christophe Fontanier, Takashi Toyofuku, Kazumasa Oguri, Hiroshi Kitazato, and Gert-Jan Reichart
Biogeosciences, 14, 3067–3082, https://doi.org/10.5194/bg-14-3067-2017, https://doi.org/10.5194/bg-14-3067-2017, 2017
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Here we report Mn / Ca ratios in living benthic foraminifera from the NE Japan margin. The results show that the Mn incorporation directly reflects the environment where the foraminifera calcify. Foraminifera that live deeper in sediment, under greater redox stress, generally incorporate more Mn into their carbonate skeletons. As such, foraminifera living close to the Mn reduction zone in sediment appear promising tools for paleoceanographic reconstructions of sedimentary redox conditions.
Inge van Dijk, Lennart J. de Nooijer, and Gert-Jan Reichart
Biogeosciences, 14, 497–510, https://doi.org/10.5194/bg-14-497-2017, https://doi.org/10.5194/bg-14-497-2017, 2017
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Culturing foraminifera under controlled pCO2 conditions shows that incorporation of certain elements (Zn, Ba) into foraminiferal shells is impacted by the inorganic carbonate system. Modeling the chemical speciation of these elements suggests that incorporation is determined by the availability of free ions. Furthermore, analyzing and comparing trends in element incorporation in hyaline and porcelaneous species may provide constrains on the differences between their calcification strategies.
Dorothee C. E. Bakker, Benjamin Pfeil, Camilla S. Landa, Nicolas Metzl, Kevin M. O'Brien, Are Olsen, Karl Smith, Cathy Cosca, Sumiko Harasawa, Stephen D. Jones, Shin-ichiro Nakaoka, Yukihiro Nojiri, Ute Schuster, Tobias Steinhoff, Colm Sweeney, Taro Takahashi, Bronte Tilbrook, Chisato Wada, Rik Wanninkhof, Simone R. Alin, Carlos F. Balestrini, Leticia Barbero, Nicholas R. Bates, Alejandro A. Bianchi, Frédéric Bonou, Jacqueline Boutin, Yann Bozec, Eugene F. Burger, Wei-Jun Cai, Robert D. Castle, Liqi Chen, Melissa Chierici, Kim Currie, Wiley Evans, Charles Featherstone, Richard A. Feely, Agneta Fransson, Catherine Goyet, Naomi Greenwood, Luke Gregor, Steven Hankin, Nick J. Hardman-Mountford, Jérôme Harlay, Judith Hauck, Mario Hoppema, Matthew P. Humphreys, Christopher W. Hunt, Betty Huss, J. Severino P. Ibánhez, Truls Johannessen, Ralph Keeling, Vassilis Kitidis, Arne Körtzinger, Alex Kozyr, Evangelia Krasakopoulou, Akira Kuwata, Peter Landschützer, Siv K. Lauvset, Nathalie Lefèvre, Claire Lo Monaco, Ansley Manke, Jeremy T. Mathis, Liliane Merlivat, Frank J. Millero, Pedro M. S. Monteiro, David R. Munro, Akihiko Murata, Timothy Newberger, Abdirahman M. Omar, Tsuneo Ono, Kristina Paterson, David Pearce, Denis Pierrot, Lisa L. Robbins, Shu Saito, Joe Salisbury, Reiner Schlitzer, Bernd Schneider, Roland Schweitzer, Rainer Sieger, Ingunn Skjelvan, Kevin F. Sullivan, Stewart C. Sutherland, Adrienne J. Sutton, Kazuaki Tadokoro, Maciej Telszewski, Matthias Tuma, Steven M. A. C. van Heuven, Doug Vandemark, Brian Ward, Andrew J. Watson, and Suqing Xu
Earth Syst. Sci. Data, 8, 383–413, https://doi.org/10.5194/essd-8-383-2016, https://doi.org/10.5194/essd-8-383-2016, 2016
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Version 3 of the Surface Ocean CO2 Atlas (www.socat.info) has 14.5 million CO2 (carbon dioxide) values for the years 1957 to 2014 covering the global oceans and coastal seas. Version 3 is an update to version 2 with a longer record and 44 % more CO2 values. The CO2 measurements have been made on ships, fixed moorings and drifting buoys. SOCAT enables quantification of the ocean carbon sink and ocean acidification, as well as model evaluation, thus informing climate negotiations.
Are Olsen, Robert M. Key, Steven van Heuven, Siv K. Lauvset, Anton Velo, Xiaohua Lin, Carsten Schirnick, Alex Kozyr, Toste Tanhua, Mario Hoppema, Sara Jutterström, Reiner Steinfeldt, Emil Jeansson, Masao Ishii, Fiz F. Pérez, and Toru Suzuki
Earth Syst. Sci. Data, 8, 297–323, https://doi.org/10.5194/essd-8-297-2016, https://doi.org/10.5194/essd-8-297-2016, 2016
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The GLODAPv2 data product collects data from more than 700 hydrographic cruises into a global and internally calibrated product. It provides access to the data from almost all ocean carbon cruises carried out since the 1970s and is a unique resource for marine science, in particular regarding the ocean carbon cycle. GLODAPv2 will form the foundation for future routine synthesis of hydrographic data of the same sort.
Siv K. Lauvset, Robert M. Key, Are Olsen, Steven van Heuven, Anton Velo, Xiaohua Lin, Carsten Schirnick, Alex Kozyr, Toste Tanhua, Mario Hoppema, Sara Jutterström, Reiner Steinfeldt, Emil Jeansson, Masao Ishii, Fiz F. Perez, Toru Suzuki, and Sylvain Watelet
Earth Syst. Sci. Data, 8, 325–340, https://doi.org/10.5194/essd-8-325-2016, https://doi.org/10.5194/essd-8-325-2016, 2016
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This paper describes the mapped climatologies that are part of the Global Ocean Data Analysis Project Version 2 (GLODAPv2). GLODAPv2 is a uniformly calibrated open ocean data product on inorganic carbon and carbon-relevant variables. Global mapped climatologies of the total dissolved inorganic carbon, total alkalinity, pH, saturation state of calcite and aragonite, anthropogenic carbon, preindustrial carbon content, inorganic macronutrients, oxygen, salinity, and temperature have been created.
J. Steinhardt, C. Cléroux, L. J. de Nooijer, G.-J. Brummer, R. Zahn, G. Ganssen, and G.-J. Reichart
Biogeosciences, 12, 2411–2429, https://doi.org/10.5194/bg-12-2411-2015, https://doi.org/10.5194/bg-12-2411-2015, 2015
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In this paper we present, for the first time, results from single-chamber Mg/Ca analyses combined with single-shell δ18O and δ13C for four planktonic foraminiferal species from a sediment trap in the Mozambique Channel. Eddy-induced hydrographic variability is reflected in test carbonate chemistry of these different species. A species-specific depth-resolved mass balance model confirms distinctive migration and calcification patterns for each species as a function of hydrography.
L. Meire, D. H. Søgaard, J. Mortensen, F. J. R. Meysman, K. Soetaert, K. E. Arendt, T. Juul-Pedersen, M. E. Blicher, and S. Rysgaard
Biogeosciences, 12, 2347–2363, https://doi.org/10.5194/bg-12-2347-2015, https://doi.org/10.5194/bg-12-2347-2015, 2015
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The Greenland Ice Sheet releases large amounts of freshwater, which strongly influences the biogeochemistry of the adjacent fjord systems and continental shelves. Here we present seasonal observations of the carbonate system in the surface waters of a west Greenland tidewater outlet glacier fjord. Our data reveal a permanent undersaturation of CO2 in the surface layer of the entire fjord and adjacent shelf, creating a high annual uptake of 65gCm-2yr-1.
A. Mewes, G. Langer, S. Thoms, G. Nehrke, G.-J. Reichart, L. J. de Nooijer, and J. Bijma
Biogeosciences, 12, 2153–2162, https://doi.org/10.5194/bg-12-2153-2015, https://doi.org/10.5194/bg-12-2153-2015, 2015
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A culture study with the benthic foraminifer Amphistegina lessonii was conducted at varying seawater [Ca2+] and constant [Mg2+]. Results showed optimum growth rates and test thickness at ambient seawater Mg/Ca and a calcite Mg/Ca which is controlled by the relative seawater ratio. Results support the conceptual biomineralization model by Nehrke et al. (2013); however, our refined flux-based model suggests transmembrane transport fractionation that is slightly weaker than expected.
L. A. Salt, S. M. A. C. van Heuven, M. E. Claus, E. M. Jones, and H. J. W. de Baar
Biogeosciences, 12, 1387–1401, https://doi.org/10.5194/bg-12-1387-2015, https://doi.org/10.5194/bg-12-1387-2015, 2015
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The increase in anthropogenic atmospheric carbon dioxide is mitigated by uptake by the world ocean, which alters the pH of the water. In the South Atlantic we find the highest rates of acidification relative to increase in anthropogenic carbon (Cant) found in Subantarctic Mode Water and Antarctic Intermediate Water. The moderate rates of increase in Cant combined with low buffering capacities, due to low salinity and alkalinity values, have caused rapid acidification in the Subantarctic Zone.
W. Feldmeijer, L. J. de Nooijer, G.-J. Reichart, and G.M. Ganssen
Clim. Past Discuss., https://doi.org/10.5194/cpd-10-3847-2014, https://doi.org/10.5194/cpd-10-3847-2014, 2014
Revised manuscript not accepted
C. Le Quéré, G. P. Peters, R. J. Andres, R. M. Andrew, T. A. Boden, P. Ciais, P. Friedlingstein, R. A. Houghton, G. Marland, R. Moriarty, S. Sitch, P. Tans, A. Arneth, A. Arvanitis, D. C. E. Bakker, L. Bopp, J. G. Canadell, L. P. Chini, S. C. Doney, A. Harper, I. Harris, J. I. House, A. K. Jain, S. D. Jones, E. Kato, R. F. Keeling, K. Klein Goldewijk, A. Körtzinger, C. Koven, N. Lefèvre, F. Maignan, A. Omar, T. Ono, G.-H. Park, B. Pfeil, B. Poulter, M. R. Raupach, P. Regnier, C. Rödenbeck, S. Saito, J. Schwinger, J. Segschneider, B. D. Stocker, T. Takahashi, B. Tilbrook, S. van Heuven, N. Viovy, R. Wanninkhof, A. Wiltshire, and S. Zaehle
Earth Syst. Sci. Data, 6, 235–263, https://doi.org/10.5194/essd-6-235-2014, https://doi.org/10.5194/essd-6-235-2014, 2014
D. C. E. Bakker, B. Pfeil, K. Smith, S. Hankin, A. Olsen, S. R. Alin, C. Cosca, S. Harasawa, A. Kozyr, Y. Nojiri, K. M. O'Brien, U. Schuster, M. Telszewski, B. Tilbrook, C. Wada, J. Akl, L. Barbero, N. R. Bates, J. Boutin, Y. Bozec, W.-J. Cai, R. D. Castle, F. P. Chavez, L. Chen, M. Chierici, K. Currie, H. J. W. de Baar, W. Evans, R. A. Feely, A. Fransson, Z. Gao, B. Hales, N. J. Hardman-Mountford, M. Hoppema, W.-J. Huang, C. W. Hunt, B. Huss, T. Ichikawa, T. Johannessen, E. M. Jones, S. D. Jones, S. Jutterström, V. Kitidis, A. Körtzinger, P. Landschützer, S. K. Lauvset, N. Lefèvre, A. B. Manke, J. T. Mathis, L. Merlivat, N. Metzl, A. Murata, T. Newberger, A. M. Omar, T. Ono, G.-H. Park, K. Paterson, D. Pierrot, A. F. Ríos, C. L. Sabine, S. Saito, J. Salisbury, V. V. S. S. Sarma, R. Schlitzer, R. Sieger, I. Skjelvan, T. Steinhoff, K. F. Sullivan, H. Sun, A. J. Sutton, T. Suzuki, C. Sweeney, T. Takahashi, J. Tjiputra, N. Tsurushima, S. M. A. C. van Heuven, D. Vandemark, P. Vlahos, D. W. R. Wallace, R. Wanninkhof, and A. J. Watson
Earth Syst. Sci. Data, 6, 69–90, https://doi.org/10.5194/essd-6-69-2014, https://doi.org/10.5194/essd-6-69-2014, 2014
L. Pozzato, D. Van Oevelen, L. Moodley, K. Soetaert, and J. J. Middelburg
Biogeosciences, 10, 6879–6891, https://doi.org/10.5194/bg-10-6879-2013, https://doi.org/10.5194/bg-10-6879-2013, 2013
G. Nehrke, N. Keul, G. Langer, L. J. de Nooijer, J. Bijma, and A. Meibom
Biogeosciences, 10, 6759–6767, https://doi.org/10.5194/bg-10-6759-2013, https://doi.org/10.5194/bg-10-6759-2013, 2013
J. C. Wit, L. J. de Nooijer, M. Wolthers, and G. J. Reichart
Biogeosciences, 10, 6375–6387, https://doi.org/10.5194/bg-10-6375-2013, https://doi.org/10.5194/bg-10-6375-2013, 2013
L. Meire, K. E. R. Soetaert, and F. J. R. Meysman
Biogeosciences, 10, 2633–2653, https://doi.org/10.5194/bg-10-2633-2013, https://doi.org/10.5194/bg-10-2633-2013, 2013
A. de Kluijver, K. Soetaert, J. Czerny, K. G. Schulz, T. Boxhammer, U. Riebesell, and J. J. Middelburg
Biogeosciences, 10, 1425–1440, https://doi.org/10.5194/bg-10-1425-2013, https://doi.org/10.5194/bg-10-1425-2013, 2013
K. A. Koho, K. G. J. Nierop, L. Moodley, J. J. Middelburg, L. Pozzato, K. Soetaert, J. van der Plicht, and G-J. Reichart
Biogeosciences, 10, 1131–1141, https://doi.org/10.5194/bg-10-1131-2013, https://doi.org/10.5194/bg-10-1131-2013, 2013
K. Soetaert, D. van Oevelen, and S. Sommer
Biogeosciences, 9, 5341–5352, https://doi.org/10.5194/bg-9-5341-2012, https://doi.org/10.5194/bg-9-5341-2012, 2012
I. G. M. Wientjes, R. S. W. Van de Wal, G. J. Reichart, A. Sluijs, and J. Oerlemans
The Cryosphere, 5, 589–601, https://doi.org/10.5194/tc-5-589-2011, https://doi.org/10.5194/tc-5-589-2011, 2011
Related subject area
Biodiversity and Ecosystem Function: Marine
Contrasting vertical distributions of recent planktic foraminifera off Indonesia during the southeast monsoon: implications for paleoceanographic reconstructions
The onset of the spring phytoplankton bloom in the coastal North Sea supports the Disturbance Recovery Hypothesis
Species richness and functional attributes of fish assemblages across a large-scale salinity gradient in shallow coastal areas
Modeling the growth and sporulation dynamics of the macroalga Ulva in mixed-age populations in cultivation and the formation of green tides
Spatial changes in community composition and food web structure of mesozooplankton across the Adriatic basin (Mediterranean Sea)
Predicting mangrove forest dynamics across a soil salinity gradient using an individual-based vegetation model linked with plant hydraulics
Will daytime community calcification reflect reef accretion on future, degraded coral reefs?
Modeling polar marine ecosystem functions guided by bacterial physiological and taxonomic traits
Enhanced chlorophyll-a concentration in the wake of Sable Island, eastern Canada, revealed by two decades of satellite observations: a response to grey seal population dynamics?
Population dynamics and reproduction strategies of planktonic foraminifera in the open ocean
The Bouraké semi-enclosed lagoon (New Caledonia) – a natural laboratory to study the lifelong adaptation of a coral reef ecosystem to extreme environmental conditions
Atypical, high-diversity assemblages of foraminifera in a mangrove estuary in northern Brazil
Permanent ectoplasmic structures in deep-sea Cibicides and Cibicidoides taxa – long-term observations at in situ pressure
Ideas and perspectives: Ushering the Indian Ocean into the UN Decade of Ocean Science for Sustainable Development (UNDOSSD) through marine ecosystem research and operational services – an early career's take
Persistent effects of sand extraction on habitats and associated benthic communities in the German Bight
Spatial patterns of ectoenzymatic kinetics in relation to biogeochemical properties in the Mediterranean Sea and the concentration of the fluorogenic substrate used
Mediterranean seagrasses as carbon sinks: Methodological and regional differences
A 2-decade (1988–2009) record of diatom fluxes in the Mauritanian coastal upwelling: impact of low-frequency forcing and a two-step shift in the species composition
Review and syntheses: Impacts of turbidity flows on deep-sea benthic communities
Ideas and perspectives: When ocean acidification experiments are not the same, repeatability is not tested
The effect of the salinity, light regime and food source on carbon and nitrogen uptake in a benthic foraminifer
Changes in population depth distribution and oxygen stratification are involved in the current low condition of the eastern Baltic Sea cod (Gadus morhua)
Effects of spatial variability on the exposure of fish to hypoxia: a modeling analysis for the Gulf of Mexico
Plant genotype determines biomass response to flooding frequency in tidal wetlands
Factors controlling the competition between Phaeocystis and diatoms in the Southern Ocean and implications for carbon export fluxes
Characterization of particle-associated and free-living bacterial and archaeal communities along the water columns of the South China Sea
Adult life strategy affects distribution patterns in abyssal isopods – implications for conservation in Pacific nodule areas
Diversity and distribution of nitrogen fixation genes in the oxygen minimum zones of the world oceans
Structure and function of epipelagic mesozooplankton and their response to dust deposition events during the spring PEACETIME cruise in the Mediterranean Sea
Distribution of planktonic foraminifera in the subtropical South Atlantic: depth hierarchy of controlling factors
Technical note: Estimating light-use efficiency of benthic habitats using underwater O2 eddy covariance
Ocean acidification reduces growth and grazing impact of Antarctic heterotrophic nanoflagellates
Dynamics of environmental conditions during the decline of a Cymodocea nodosa meadow
Megafauna community assessment of polymetallic-nodule fields with cameras: platform and methodology comparison
A meta-analysis on environmental drivers of marine phytoplankton C : N : P
Spatial and temporal variability in the response of phytoplankton and prokaryotes to B-vitamin amendments in an upwelling system
Biogeography and community structure of abyssal scavenging Amphipoda (Crustacea) in the Pacific Ocean
Are seamounts refuge areas for fauna from polymetallic nodule fields?
Ocean deoxygenation and copepods: coping with oxygen minimum zone variability
Unexpected high abyssal ophiuroid diversity in polymetallic nodule fields of the northeast Pacific Ocean and implications for conservation
Population dynamics of modern planktonic foraminifera in the western Barents Sea
Foraminiferal community response to seasonal anoxia in Lake Grevelingen (the Netherlands)
Light availability modulates the effects of warming in a marine N2 fixer
SiR-actin-labelled granules in foraminifera: patterns, dynamics, and hypotheses
Alpha and beta diversity patterns of polychaete assemblages across the nodule province of the eastern Clarion-Clipperton Fracture Zone (equatorial Pacific)
Dimensions of marine phytoplankton diversity
The Arctic picoeukaryote Micromonas pusilla benefits from ocean acidification under constant and dynamic light
Flux variability of phyto- and zooplankton communities in the Mauritanian coastal upwelling between 2003 and 2008
Environmental factors influencing benthic communities in the oxygen minimum zones on the Angolan and Namibian margins
Hypoxia in mangroves: occurrence and impact on valuable tropical fish habitat
Raúl Tapia, Sze Ling Ho, Hui-Yu Wang, Jeroen Groeneveld, and Mahyar Mohtadi
Biogeosciences, 19, 3185–3208, https://doi.org/10.5194/bg-19-3185-2022, https://doi.org/10.5194/bg-19-3185-2022, 2022
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We report census counts of planktic foraminifera in depth-stratified plankton net samples off Indonesia. Our results show that the vertical distribution of foraminifera species routinely used in paleoceanographic reconstructions varies in hydrographically distinct regions, likely in response to food availability. Consequently, the thermal gradient based on mixed layer and thermocline dwellers also differs for these regions, suggesting potential implications for paleoceanographic reconstructions.
Ricardo González-Gil, Neil S. Banas, Eileen Bresnan, and Michael R. Heath
Biogeosciences, 19, 2417–2426, https://doi.org/10.5194/bg-19-2417-2022, https://doi.org/10.5194/bg-19-2417-2022, 2022
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In oceanic waters, the accumulation of phytoplankton biomass in winter, when light still limits growth, is attributed to a decrease in grazing as the mixed layer deepens. However, in coastal areas, it is not clear whether winter biomass can accumulate without this deepening. Using 21 years of weekly data, we found that in the Scottish coastal North Sea, the seasonal increase in light availability triggers the accumulation of phytoplankton biomass in winter, when light limitation is strongest.
Birgit Koehler, Mårten Erlandsson, Martin Karlsson, and Lena Bergström
Biogeosciences, 19, 2295–2312, https://doi.org/10.5194/bg-19-2295-2022, https://doi.org/10.5194/bg-19-2295-2022, 2022
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Understanding species richness patterns remains a challenge for biodiversity management. We estimated fish species richness over a coastal salinity gradient (3–32) with a method that allowed comparing data from various sources. Species richness was 3-fold higher at high vs. low salinity, and salinity influenced species’ habitat preference, mobility and feeding type. If climate change causes upper-layer freshening of the Baltic Sea, further shifts along the identified patterns may be expected.
Uri Obolski, Thomas Wichard, Alvaro Israel, Alexander Golberg, and Alexander Liberzon
Biogeosciences, 19, 2263–2271, https://doi.org/10.5194/bg-19-2263-2022, https://doi.org/10.5194/bg-19-2263-2022, 2022
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The algal genus Ulva plays a major role in coastal ecosystems worldwide and is a promising prospect as an seagriculture crop. A substantial hindrance to cultivating Ulva arises from sudden sporulation, leading to biomass loss. This process is not yet well understood. Here, we characterize the dynamics of Ulva growth, considering the potential impact of sporulation inhibitors, using a mathematical model. Our findings are an essential step towards understanding the dynamics of Ulva growth.
Emanuela Fanelli, Samuele Menicucci, Sara Malavolti, Andrea De Felice, and Iole Leonori
Biogeosciences, 19, 1833–1851, https://doi.org/10.5194/bg-19-1833-2022, https://doi.org/10.5194/bg-19-1833-2022, 2022
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Zooplankton play a key role in marine ecosystems, forming the base of the marine food web and a link between primary producers and higher-order consumers, such as fish. This aspect is crucial in the Adriatic basin, one of the most productive and overexploited areas of the Mediterranean Sea. A better understanding of community and food web structure and their response to water mass changes is essential under a global warming scenario, as zooplankton are sensitive to climate change.
Masaya Yoshikai, Takashi Nakamura, Rempei Suwa, Sahadev Sharma, Rene Rollon, Jun Yasuoka, Ryohei Egawa, and Kazuo Nadaoka
Biogeosciences, 19, 1813–1832, https://doi.org/10.5194/bg-19-1813-2022, https://doi.org/10.5194/bg-19-1813-2022, 2022
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This study presents a new individual-based vegetation model to investigate salinity control on mangrove productivity. The model incorporates plant hydraulics and tree competition and predicts unique and complex patterns of mangrove forest structures that vary across soil salinity gradients. The presented model does not hold an empirical expression of salinity influence on productivity and thus may provide a better understanding of mangrove forest dynamics in future climate change.
Coulson A. Lantz, William Leggat, Jessica L. Bergman, Alexander Fordyce, Charlotte Page, Thomas Mesaglio, and Tracy D. Ainsworth
Biogeosciences, 19, 891–906, https://doi.org/10.5194/bg-19-891-2022, https://doi.org/10.5194/bg-19-891-2022, 2022
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Coral bleaching events continue to drive the degradation of coral reefs worldwide. In this study we measured rates of daytime coral reef community calcification and photosynthesis during a reef-wide bleaching event. Despite a measured decline in coral health across several taxa, there was no change in overall daytime community calcification and photosynthesis. These findings highlight potential limitations of these community-level metrics to reflect actual changes in coral health.
Hyewon Heather Kim, Jeff S. Bowman, Ya-Wei Luo, Hugh W. Ducklow, Oscar M. Schofield, Deborah K. Steinberg, and Scott C. Doney
Biogeosciences, 19, 117–136, https://doi.org/10.5194/bg-19-117-2022, https://doi.org/10.5194/bg-19-117-2022, 2022
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Heterotrophic marine bacteria are tiny organisms responsible for taking up organic matter in the ocean. Using a modeling approach, this study shows that characteristics (taxonomy and physiology) of bacteria are associated with a subset of ecological processes in the coastal West Antarctic Peninsula region, a system susceptible to global climate change. This study also suggests that bacteria will become more active, in particular large-sized cells, in response to changing climates in the region.
Emmanuel Devred, Andrea Hilborn, and Cornelia Elizabeth den Heyer
Biogeosciences, 18, 6115–6132, https://doi.org/10.5194/bg-18-6115-2021, https://doi.org/10.5194/bg-18-6115-2021, 2021
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A theoretical model of grey seal seasonal abundance on Sable Island (SI) coupled with chlorophyll-a concentration [chl-a] measured by satellite revealed the impact of seal nitrogen fertilization on the surrounding waters of SI, Canada. The increase in seals from about 100 000 in 2003 to about 360 000 in 2018 during the breeding season is consistent with an increase in [chl-a] leeward of SI. The increase in seal abundance explains 8 % of the [chl-a] increase.
Julie Meilland, Michael Siccha, Maike Kaffenberger, Jelle Bijma, and Michal Kucera
Biogeosciences, 18, 5789–5809, https://doi.org/10.5194/bg-18-5789-2021, https://doi.org/10.5194/bg-18-5789-2021, 2021
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Planktonic foraminifera population dynamics has long been assumed to be controlled by synchronous reproduction and ontogenetic vertical migration (OVM). Due to contradictory observations, this concept became controversial. We here test it in the Atlantic ocean for four species of foraminifera representing the main clades. Our observations support the existence of synchronised reproduction and OVM but show that more than half of the population does not follow the canonical trajectory.
Federica Maggioni, Mireille Pujo-Pay, Jérome Aucan, Carlo Cerrano, Barbara Calcinai, Claude Payri, Francesca Benzoni, Yves Letourneur, and Riccardo Rodolfo-Metalpa
Biogeosciences, 18, 5117–5140, https://doi.org/10.5194/bg-18-5117-2021, https://doi.org/10.5194/bg-18-5117-2021, 2021
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Based on current experimental evidence, climate change will affect up to 90 % of coral reefs worldwide. The originality of this study arises from our recent discovery of an exceptional study site where environmental conditions (temperature, pH, and oxygen) are even worse than those forecasted for the future.
While these conditions are generally recognized as unfavorable for marine life, we found a rich and abundant coral reef thriving under such extreme environmental conditions.
Nisan Sariaslan and Martin R. Langer
Biogeosciences, 18, 4073–4090, https://doi.org/10.5194/bg-18-4073-2021, https://doi.org/10.5194/bg-18-4073-2021, 2021
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Analyses of foraminiferal assemblages from the Mamanguape mangrove estuary (northern Brazil) revealed highly diverse, species-rich, and structurally complex biotas. The atypical fauna resembles shallow-water offshore assemblages and are interpreted to be the result of highly saline ocean waters penetrating deep into the estuary. The findings contrast with previous studies, have implications for the fossil record, and provide novel perspectives for reconstructing mangrove environments.
Jutta E. Wollenburg, Jelle Bijma, Charlotte Cremer, Ulf Bickmeyer, and Zora Mila Colomba Zittier
Biogeosciences, 18, 3903–3915, https://doi.org/10.5194/bg-18-3903-2021, https://doi.org/10.5194/bg-18-3903-2021, 2021
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Cultured at in situ high-pressure conditions Cibicides and Cibicidoides taxa develop lasting ectoplasmic structures that cannot be retracted or resorbed. An ectoplasmic envelope surrounds their test and may protect the shell, e.g. versus carbonate aggressive bottom water conditions. Ectoplasmic roots likely anchor the specimens in areas of strong bottom water currents, trees enable them to elevate themselves above ground, and twigs stabilize and guide the retractable pseudopodial network.
Kumar Nimit
Biogeosciences, 18, 3631–3635, https://doi.org/10.5194/bg-18-3631-2021, https://doi.org/10.5194/bg-18-3631-2021, 2021
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The Indian Ocean Rim hosts many of the underdeveloped and emerging economies that depend on ocean resources for the livelihood of millions. Operational ocean information services cater to the requirements of resource managers and end-users to efficiently harness resources, mitigate threats and ensure safety. This paper outlines existing tools and explores the ongoing research that has the potential to convert the findings into operational services in the near- to midterm.
Finn Mielck, Rune Michaelis, H. Christian Hass, Sarah Hertel, Caroline Ganal, and Werner Armonies
Biogeosciences, 18, 3565–3577, https://doi.org/10.5194/bg-18-3565-2021, https://doi.org/10.5194/bg-18-3565-2021, 2021
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Marine sand mining is becoming more and more important to nourish fragile coastlines that face global change. We investigated the largest sand extraction site in the German Bight. The study reveals that after more than 35 years of mining, the excavation pits are still detectable on the seafloor while the sediment composition has largely changed. The organic communities living in and on the seafloor were strongly decimated, and no recovery is observable towards previous conditions.
France Van Wambeke, Elvira Pulido, Philippe Catala, Julie Dinasquet, Kahina Djaoudi, Anja Engel, Marc Garel, Sophie Guasco, Barbara Marie, Sandra Nunige, Vincent Taillandier, Birthe Zäncker, and Christian Tamburini
Biogeosciences, 18, 2301–2323, https://doi.org/10.5194/bg-18-2301-2021, https://doi.org/10.5194/bg-18-2301-2021, 2021
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Michaelis–Menten kinetics were determined for alkaline phosphatase, aminopeptidase and β-glucosidase in the Mediterranean Sea. Although the ectoenzymatic-hydrolysis contribution to heterotrophic prokaryotic needs was high in terms of N, it was low in terms of C. This study points out the biases in interpretation of the relative differences in activities among the three tested enzymes in regard to the choice of added concentrations of fluorogenic substrates.
Anna Escolano-Moltó, Susana Flecha, Raquel Vaquer-Sunyer, Marlene Wesselmann, Núria Marbà, and Iris Eline Hendriks
Biogeosciences Discuss., https://doi.org/10.5194/bg-2021-60, https://doi.org/10.5194/bg-2021-60, 2021
Revised manuscript accepted for BG
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Seagrasses are marine plants with the capacity to act as carbon sinks due to their high primary productivity, using carbon for growth. This capacity can play a key role in climate change mitigation. We compiled published and own data and show two Mediterranean seagrass species have different metabolic rates and the method used influences the rates of the measurements. Also the Eastern basin is more productive compared to the Western Mediterranean while most communities act as carbon sinks.
Oscar E. Romero, Simon Ramondenc, and Gerhard Fischer
Biogeosciences, 18, 1873–1891, https://doi.org/10.5194/bg-18-1873-2021, https://doi.org/10.5194/bg-18-1873-2021, 2021
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Upwelling intensity along NW Africa varies on the interannual to decadal timescale. Understanding its changes is key for the prediction of future changes of CO2 sequestration in the northeastern Atlantic. Based on a multiyear (1988–2009) sediment trap experiment at the site CBmeso, fluxes and the species composition of the diatom assemblage are presented. Our data help in establishing the scientific basis for forecasting and modeling future states of this ecosystem and its decadal changes.
Katharine T. Bigham, Ashley A. Rowden, Daniel Leduc, and David A. Bowden
Biogeosciences, 18, 1893–1908, https://doi.org/10.5194/bg-18-1893-2021, https://doi.org/10.5194/bg-18-1893-2021, 2021
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Turbidity flows – underwater avalanches – are large-scale physical disturbances believed to have profound impacts on productivity and diversity of benthic communities in the deep sea. We reviewed published studies and found that current evidence for changes in productivity is ambiguous at best, but the influence on regional and local diversity is clearer. We suggest study design criteria that may lead to a better understanding of large-scale disturbance effects on deep-sea benthos.
Phillip Williamson, Hans-Otto Pörtner, Steve Widdicombe, and Jean-Pierre Gattuso
Biogeosciences, 18, 1787–1792, https://doi.org/10.5194/bg-18-1787-2021, https://doi.org/10.5194/bg-18-1787-2021, 2021
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The reliability of ocean acidification research was challenged in early 2020 when a high-profile paper failed to corroborate previously observed impacts of high CO2 on the behaviour of coral reef fish. We now know the reason why: the
replicatedstudies differed in many ways. Open-minded and collaborative assessment of all research results, both negative and positive, remains the best way to develop process-based understanding of the impacts of ocean acidification on marine organisms.
Michael Lintner, Bianca Lintner, Wolfgang Wanek, Nina Keul, and Petra Heinz
Biogeosciences, 18, 1395–1406, https://doi.org/10.5194/bg-18-1395-2021, https://doi.org/10.5194/bg-18-1395-2021, 2021
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Foraminifera are unicellular marine organisms that play an important role in the marine element cycle. Changes of environmental parameters such as salinity or temperature have a significant impact on the faunal assemblages. Our experiments show that changes in salinity immediately influence the foraminiferal activity. Also the light regime has a significant impact on carbon or nitrogen processing in foraminifera which contain no kleptoplasts.
Michele Casini, Martin Hansson, Alessandro Orio, and Karin Limburg
Biogeosciences, 18, 1321–1331, https://doi.org/10.5194/bg-18-1321-2021, https://doi.org/10.5194/bg-18-1321-2021, 2021
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In the past 20 years the condition of the eastern Baltic cod has dropped, with large implications for the fishery. Our results show that simultaneously the cod population has moved deeper while low-oxygenated waters detrimental for cod growth have become shallower. Cod have thus dwelled more in detrimental waters, explaining the drop in its condition. This study, using long-term fish and hydrological monitoring data, evidences the impact of deoxygenation on fish biology and fishing.
Elizabeth D. LaBone, Kenneth A. Rose, Dubravko Justic, Haosheng Huang, and Lixia Wang
Biogeosciences, 18, 487–507, https://doi.org/10.5194/bg-18-487-2021, https://doi.org/10.5194/bg-18-487-2021, 2021
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The hypoxic zone is an area of low dissolved oxygen (DO) in the Gulf of Mexico. Fish can be killed by exposure to hypoxia and can be negatively impacted by exposure to low, nonlethal DO concentrations (sublethal DO). We found that high sublethal area resulted in higher exposure and DO variability had a small effect on exposure. There was a large variation in exposure among individuals, which when combined with spatial variability of DO, can result in an underestimation of exposure when averaged.
Svenja Reents, Peter Mueller, Hao Tang, Kai Jensen, and Stefanie Nolte
Biogeosciences, 18, 403–411, https://doi.org/10.5194/bg-18-403-2021, https://doi.org/10.5194/bg-18-403-2021, 2021
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By conducting a flooding experiment with two genotypes of the salt-marsh grass Elymus athericus, we show considerable differences in biomass response to flooding within the same species. As biomass production plays a major role in sedimentation processes and thereby salt-marsh accretion, we emphasise the importance of taking intraspecific differences into account when evaluating ecosystem resilience to accelerated sea level rise.
Cara Nissen and Meike Vogt
Biogeosciences, 18, 251–283, https://doi.org/10.5194/bg-18-251-2021, https://doi.org/10.5194/bg-18-251-2021, 2021
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Using a regional Southern Ocean ecosystem model, we find that the relative importance of Phaeocystis and diatoms at high latitudes is controlled by iron and temperature variability, with light levels controlling the seasonal succession in coastal areas. Yet, biomass losses via aggregation and grazing matter as well. We show that the seasonal succession of Phaeocystis and diatoms impacts the seasonality of carbon export fluxes with ramifications for nutrient cycling and food web dynamics.
Jiangtao Li, Lingyuan Gu, Shijie Bai, Jie Wang, Lei Su, Bingbing Wei, Li Zhang, and Jiasong Fang
Biogeosciences, 18, 113–133, https://doi.org/10.5194/bg-18-113-2021, https://doi.org/10.5194/bg-18-113-2021, 2021
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Few studies have focused on the particle-attached (PA) and free-living (FL) microbes of the deep ocean. Here we determined PA and FL microbial communities along depth profiles of the SCS. PA and FL fractions accommodated divergent microbial compositions, and most of them are potentially generalists with PA and FL dual lifestyles. A potential vertical connectivity between surface-specific microbes and those in the deep ocean was indicated, likely through microbial attachment to sinking particles.
Saskia Brix, Karen J. Osborn, Stefanie Kaiser, Sarit B. Truskey, Sarah M. Schnurr, Nils Brenke, Marina Malyutina, and Pedro Martinez Arbizu
Biogeosciences, 17, 6163–6184, https://doi.org/10.5194/bg-17-6163-2020, https://doi.org/10.5194/bg-17-6163-2020, 2020
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The Clarion–Clipperton Fracture Zone (CCZ) located in the Pacific is commercially the most important area of proposed manganese nodule mining. Extraction of this will influence the life and distribution of small deep-sea invertebrates like peracarid crustaceans, of which >90 % are undescribed species new to science. We are doing a species delimitation approach as baseline for an ecological interpretation of species distribution and discuss the results in light of future deep-sea conservation.
Amal Jayakumar and Bess B. Ward
Biogeosciences, 17, 5953–5966, https://doi.org/10.5194/bg-17-5953-2020, https://doi.org/10.5194/bg-17-5953-2020, 2020
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Diversity and community composition of nitrogen-fixing microbes in the three main oxygen minimum zones of the world ocean were investigated using nifH clone libraries. Representatives of three main clusters of nifH genes were detected. Sequences were most diverse in the surface waters. The most abundant OTUs were affiliated with Alpha- and Gammaproteobacteria. The sequences were biogeographically distinct and the dominance of a few OTUs was commonly observed in OMZs in this (and other) studies.
Guillermo Feliú, Marc Pagano, Pamela Hidalgo, and François Carlotti
Biogeosciences, 17, 5417–5441, https://doi.org/10.5194/bg-17-5417-2020, https://doi.org/10.5194/bg-17-5417-2020, 2020
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The impact of Saharan dust deposition events on the Mediterranean Sea ecosystem was studied during a basin-scale survey (PEACETIME cruise, May–June 2017). Short-term responses of the zooplankton community were observed after episodic dust deposition events, highlighting the impact of these events on productivity up to the zooplankton level in the poorly fertilized pelagic ecosystems of the southern Mediterranean Sea.
Douglas Lessa, Raphaël Morard, Lukas Jonkers, Igor M. Venancio, Runa Reuter, Adrian Baumeister, Ana Luiza Albuquerque, and Michal Kucera
Biogeosciences, 17, 4313–4342, https://doi.org/10.5194/bg-17-4313-2020, https://doi.org/10.5194/bg-17-4313-2020, 2020
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We observed that living planktonic foraminifera had distinct vertically distributed communities across the Subtropical South Atlantic. In addition, a hierarchic alternation of environmental parameters was measured to control the distribution of planktonic foraminifer's species depending on the water depth. This implies that not only temperature but also productivity and subsurface processes are signed in fossil assemblages, which could be used to perform paleoceanographic reconstructions.
Karl M. Attard and Ronnie N. Glud
Biogeosciences, 17, 4343–4353, https://doi.org/10.5194/bg-17-4343-2020, https://doi.org/10.5194/bg-17-4343-2020, 2020
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Light-use efficiency defines the ability of primary producers to convert sunlight energy to primary production. This report provides a framework to compute hourly and daily light-use efficiency using underwater eddy covariance, a recent technological development that produces habitat-scale rates of primary production for many different habitat types. The approach, tested on measured flux data, provides a useful means to compare habitat productivity across time and space.
Stacy Deppeler, Kai G. Schulz, Alyce Hancock, Penelope Pascoe, John McKinlay, and Andrew Davidson
Biogeosciences, 17, 4153–4171, https://doi.org/10.5194/bg-17-4153-2020, https://doi.org/10.5194/bg-17-4153-2020, 2020
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Our study showed how ocean acidification can exert both direct and indirect influences on the interactions among trophic levels within the microbial loop. Microbial grazer abundance was reduced at CO2 concentrations at and above 634 µatm, while microbial communities increased in abundance, likely due to a reduction in being grazed. Such changes in predator–prey interactions with ocean acidification could have significant effects on the food web and biogeochemistry in the Southern Ocean.
Mirjana Najdek, Marino Korlević, Paolo Paliaga, Marsej Markovski, Ingrid Ivančić, Ljiljana Iveša, Igor Felja, and Gerhard J. Herndl
Biogeosciences, 17, 3299–3315, https://doi.org/10.5194/bg-17-3299-2020, https://doi.org/10.5194/bg-17-3299-2020, 2020
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The response of Cymodocea nodosa to environmental changes was reported during a 15-month period. The meadow decline was triggered in spring by the simultaneous reduction of available light in the water column and the creation of anoxic conditions in the rooted area. This disturbance was critical for the plant since it took place during its recruitment phase when metabolic needs are maximal and stored reserves minimal. The loss of such habitat-forming seagrass is a major environmental concern.
Timm Schoening, Autun Purser, Daniel Langenkämper, Inken Suck, James Taylor, Daphne Cuvelier, Lidia Lins, Erik Simon-Lledó, Yann Marcon, Daniel O. B. Jones, Tim Nattkemper, Kevin Köser, Martin Zurowietz, Jens Greinert, and Jose Gomes-Pereira
Biogeosciences, 17, 3115–3133, https://doi.org/10.5194/bg-17-3115-2020, https://doi.org/10.5194/bg-17-3115-2020, 2020
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Seafloor imaging is widely used in marine science and industry to explore and monitor areas of interest. The selection of the most appropriate imaging gear and deployment strategy depends on the target application. This paper compares imaging platforms like autonomous vehicles or towed camera frames and different deployment strategies of those in assessing the megafauna abundance of polymetallic-nodule fields. The deep-sea mining industry needs that information for robust impact monitoring.
Tatsuro Tanioka and Katsumi Matsumoto
Biogeosciences, 17, 2939–2954, https://doi.org/10.5194/bg-17-2939-2020, https://doi.org/10.5194/bg-17-2939-2020, 2020
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We conducted an extensive literature survey (meta-analysis) on how the C : N : P ratio varies with change in key environmental drivers. We found that the expected reduction in nutrients and warming under the future climate change scenario is likely to result in increased C : P and C : N of marine phytoplankton. Further, our findings highlight the greater stoichiometric plasticity of eukaryotes over prokaryotes, which provide us insights on how to understand and model plankton.
Vanessa Joglar, Antero Prieto, Esther Barber-Lluch, Marta Hernández-Ruiz, Emilio Fernández, and Eva Teira
Biogeosciences, 17, 2807–2823, https://doi.org/10.5194/bg-17-2807-2020, https://doi.org/10.5194/bg-17-2807-2020, 2020
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Coastal marine ecosystems are among the most ecologically and economically productive areas providing a large fraction of ecosystem goods and services to human populations, and B vitamins have long been considered important growth factors for phytoplankton. Our findings indicate that the responses of microbial plankton to B-vitamin supply are mainly driven by the bacterial community composition and that microbial plankton in this area seems to be well adapted to cope with B-vitamin shortage.
Tasnim Patel, Henri Robert, Cedric D'Udekem D'Acoz, Koen Martens, Ilse De Mesel, Steven Degraer, and Isa Schön
Biogeosciences, 17, 2731–2744, https://doi.org/10.5194/bg-17-2731-2020, https://doi.org/10.5194/bg-17-2731-2020, 2020
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Exploitation of deep-sea resources in one of the largest ecosystems on the planet has rendered research of its biodiversity more urgent than ever before. We investigated the known habitats and connectivity of deep-sea scavenging amphipods and obtained important knowledge about several species. We also demonstrated that a long-term disturbance experiment has possibly reduced amphipod biodiversity. These data and further sampling expeditions are instrumental for formulating sustainable policies.
Daphne Cuvelier, Pedro A. Ribeiro, Sofia P. Ramalho, Daniel Kersken, Pedro Martinez Arbizu, and Ana Colaço
Biogeosciences, 17, 2657–2680, https://doi.org/10.5194/bg-17-2657-2020, https://doi.org/10.5194/bg-17-2657-2020, 2020
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Polymetallic nodule mining will remove hard substrata from the abyssal deep-sea floor. The only neighbouring ecosystems featuring hard substratum are seamounts, and their inhabiting fauna could aid in recovery post-mining. Nevertheless, first observations of seamount megafauna were very different from nodule-associated megafauna and showed little overlap. The possible uniqueness of these ecosystems implies that they should be included in management plans for the conservation of biodiversity.
Karen F. Wishner, Brad Seibel, and Dawn Outram
Biogeosciences, 17, 2315–2339, https://doi.org/10.5194/bg-17-2315-2020, https://doi.org/10.5194/bg-17-2315-2020, 2020
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Increasing deoxygenation and oxygen minimum zone expansion are consequences of global warming. Copepod species had different vertical distribution strategies and physiologies associated with oxygen profile variability (0–1000 m). Species (1) changed vertical distributions and maximum abundance depth, (2) shifted diapause depth, (3) changed diel vertical migration depths, or (4) changed epipelagic depth range in the aerobic mixed layer. Present-day variability helps predict future scenarios.
Magdalini Christodoulou, Timothy O'Hara, Andrew F. Hugall, Sahar Khodami, Clara F. Rodrigues, Ana Hilario, Annemiek Vink, and Pedro Martinez Arbizu
Biogeosciences, 17, 1845–1876, https://doi.org/10.5194/bg-17-1845-2020, https://doi.org/10.5194/bg-17-1845-2020, 2020
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Unexpectedly high diversity was revealed in areas licenced for polymetallic nodule mining exploration in the Pacific Ocean. For the first time, a comprehensive reference library including 287 novel ophiuroid sequences allocated to 43 species was produced. Differences in food availability along the nodule province of CCZ were reflected in the biodiversity patterns observed. The APEI3's dissimilarity with the exploration contract areas questions its ability to serve as a biodiversity reservoir.
Julie Meilland, Hélène Howa, Vivien Hulot, Isaline Demangel, Joëlle Salaün, and Thierry Garlan
Biogeosciences, 17, 1437–1450, https://doi.org/10.5194/bg-17-1437-2020, https://doi.org/10.5194/bg-17-1437-2020, 2020
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This study reports on planktonic foraminifera (PF) diversity and distribution in the Barents Sea. The species Globigerinita uvula and Turborotalita quinqueloba dominate the water column while surface sediments are dominated by Neogloboquadrina pachyderma. We hypothesize the unusual dominance of G. uvula in the water to be a seasonal signal or a result of climate forcing. Size-normalized-protein concentrations of PF show a northward decrease, suggesting biomass to vary with the environment.
Julien Richirt, Bettina Riedel, Aurélia Mouret, Magali Schweizer, Dewi Langlet, Dorina Seitaj, Filip J. R. Meysman, Caroline P. Slomp, and Frans J. Jorissen
Biogeosciences, 17, 1415–1435, https://doi.org/10.5194/bg-17-1415-2020, https://doi.org/10.5194/bg-17-1415-2020, 2020
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The paper presents the response of benthic foraminiferal communities to seasonal absence of oxygen coupled with the presence of hydrogen sulfide, considered very harmful for several living organisms.
Our results suggest that the foraminiferal community mainly responds as a function of the duration of the adverse conditions.
This knowledge is especially useful to better understand the ecology of benthic foraminifera but also in the context of palaeoceanographic interpretations.
Xiangqi Yi, Fei-Xue Fu, David A. Hutchins, and Kunshan Gao
Biogeosciences, 17, 1169–1180, https://doi.org/10.5194/bg-17-1169-2020, https://doi.org/10.5194/bg-17-1169-2020, 2020
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Combined effects of warming and light intensity were estimated in N2-fixing cyanobacterium Trichodesmium. Its physiological responses to warming were significantly modulated by light, with growth peaking at 27 °C under the light-saturating condition but being non-responsive across the range of 23–31 °C under the light-limiting condition. Light shortage also weakened the acclimation ability of Trichodesmium to warming, making light-limited Trichodesmium more sensitive to acute temperature change.
Jan Goleń, Jarosław Tyszka, Ulf Bickmeyer, and Jelle Bijma
Biogeosciences, 17, 995–1011, https://doi.org/10.5194/bg-17-995-2020, https://doi.org/10.5194/bg-17-995-2020, 2020
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We studied the organisation and dynamics of actin in foraminifera. Actin is one of the key structural proteins in most lifeforms. Our investigations show that in foraminifera it forms small granules, around 1 µm in diameter, that display rapid movement. This granularity is unusual in comparison to other organisms. We suppose that these granules are most likely involved in the formation of all types of pseudopods responsible for movement, food capturing, biomineralisation, and other functions.
Paulo Bonifácio, Pedro Martínez Arbizu, and Lénaïck Menot
Biogeosciences, 17, 865–886, https://doi.org/10.5194/bg-17-865-2020, https://doi.org/10.5194/bg-17-865-2020, 2020
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The patterns observed in the composition of polychaete assemblages were attributed to variations in food supply at the regional scale and nodule density at the local scale. The high levels of species replacement were mainly driven by rare species, leading to regional species pool estimates between 498 and 240 000 species. The high proportion of singletons seems reflect an under-sampling bias that is currently preventing the assessment of potential biodiversity loss due to nodule mining.
Stephanie Dutkiewicz, Pedro Cermeno, Oliver Jahn, Michael J. Follows, Anna E. Hickman, Darcy A. A. Taniguchi, and Ben A. Ward
Biogeosciences, 17, 609–634, https://doi.org/10.5194/bg-17-609-2020, https://doi.org/10.5194/bg-17-609-2020, 2020
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Phytoplankton are an essential component of the marine food web and earth's carbon cycle. We use observations, ecological theory and a unique trait-based ecosystem model to explain controls on patterns of marine phytoplankton biodiversity. We find that different dimensions of diversity (size classes, biogeochemical functional groups, thermal norms) are controlled by a disparate combination of mechanisms. This may explain why previous studies of phytoplankton diversity had conflicting results.
Emily White, Clara J. M. Hoppe, and Björn Rost
Biogeosciences, 17, 635–647, https://doi.org/10.5194/bg-17-635-2020, https://doi.org/10.5194/bg-17-635-2020, 2020
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The Arctic picoeukaryote Micromonas pusilla was acclimated to two pCO2 levels under a constant and a dynamic light, simulating more realistic light fields. M. pusilla was able to benefit from ocean acidification with an increase in growth rate, irrespective of the light regime. In dynamic light M. pusilla optimised its photophysiology for effective light usage during both low- and high-light periods. This highlights M. pusilla is likely to cope well with future conditions in the Arctic Ocean.
Oscar E. Romero, Karl-Heinz Baumann, Karin A. F. Zonneveld, Barbara Donner, Jens Hefter, Bambaye Hamady, Vera Pospelova, and Gerhard Fischer
Biogeosciences, 17, 187–214, https://doi.org/10.5194/bg-17-187-2020, https://doi.org/10.5194/bg-17-187-2020, 2020
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Monitoring of the multiannual evolution of populations representing different trophic levels allows for obtaining insights into the impact of climate variability in marine coastal upwelling ecosystems. By using a multiyear, continuous (1,900 d) sediment trap record, we assess the dynamics and fluxes of calcareous, organic and siliceous microorganisms off Mauritania (NW Africa). The experiment allowed for the recognition of a general sequence of seasonal variations of the main populations.
Ulrike Hanz, Claudia Wienberg, Dierk Hebbeln, Gerard Duineveld, Marc Lavaleye, Katriina Juva, Wolf-Christian Dullo, André Freiwald, Leonardo Tamborrino, Gert-Jan Reichart, Sascha Flögel, and Furu Mienis
Biogeosciences, 16, 4337–4356, https://doi.org/10.5194/bg-16-4337-2019, https://doi.org/10.5194/bg-16-4337-2019, 2019
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Along the Namibian and Angolan margins, low oxygen conditions do not meet environmental ranges for cold–water corals and hence are expected to be unsuitable habitats. Environmental conditions show that tidal movements deliver water with more oxygen and high–quality organic matter, suggesting that corals compensate unfavorable conditions with availability of food. With the expected expansion of oxygen minimum zones in the future, this study provides an example how ecosystems cope with extremes.
Alexia Dubuc, Ronald Baker, Cyril Marchand, Nathan J. Waltham, and Marcus Sheaves
Biogeosciences, 16, 3959–3976, https://doi.org/10.5194/bg-16-3959-2019, https://doi.org/10.5194/bg-16-3959-2019, 2019
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Little is known about how hypoxia influences mangrove fish assemblages. In situ video observations reveal species-specific avoidance strategies in response to developing hypoxia in a mangrove forest. Taxa commonly using mangroves could withstand hypoxia, while others usually associated with reef habitats were not recorded below 70 % saturation. These results suggest that hypoxia is an important factor shaping mangrove fish assemblages and could explain the low species richness usually observed.
Cited articles
Atkinson, M. J.: Biogeochemistry of nutrients. In Coral reefs: An ecosystem in transition, 199–206, Springer, Dordrecht, 2011.
Albright, R., Langdon, C., and Anthony, K. R. N.: Dynamics of seawater carbonate chemistry, production, and calcification of a coral reef flat, central Great Barrier Reef, Biogeosciences, 10, 6747–6758, https://doi.org/10.5194/bg-10-6747-2013, 2013.
Albright, R., Benthuysen, J., Cantin, N., Caldeira, K., and Anthony, K.: Coral reef metabolism and carbon chemistry dynamics of a coral reef flat, Geophys. Res. Lett, 42, 3980–3988, https://doi.org/10.1002/2015GL063488, 2015.
Albright, R., Caldeira, L., Hosfelt, J., Kwiatkowski, L., Maclaren, J. K., Mason, B. M., Nebuchina, Y., Ninokawa, A., Pongratz, J., Ricke, K. L., and Rivlin, T.: Reversal of ocean acidification enhances net coral reef calcification, Nature, 531, 362–365, 2016.
Albright, R., Takeshita, Y., Koweek, D. A., Ninokawa, A., Wolfe, K., Rivlin, T., Nebuchina, Y., Young, J., and Caldeira, K.: Carbon dioxide addition to coral reef waters suppresses net community calcification, Nature, 555, 516–519, 2018.
Alvarez-Filip, L., Dulvy, N. K., Gill, J. A., Côté, I. M., and Watkinson, A. R.: Flattening of Caribbean coral reefs: Region-wide declines in architectural complexity, P. R. Soc. B., 276, 3019–3025, https://doi.org/10.1098/rspb.2009.0339, 2009.
Andersson, A. J. and Gledhill, D.: Ocean Acidification and Coral Reefs: Effects on breakdown, dissolution, and net ecosystem calcification, Annu. Rev. Mar. Sci., 5, 321–348, https://doi.org/10.1146/annurev-marine-121211-172241, 2013.
Aronson, R. B., Macintyre, I. G., Lewis, S. A., and Hilbun, N. L.: Emergent zonation and geographic convergence of coral reefs, Ecology, 86, 2586–2600, 2005.
Bates, N. R., Amat, A., and Andersson, A. J.: Feedbacks and responses of coral calcification on the Bermuda reef system to seasonal changes in biological processes and ocean acidification, Biogeosciences, 7, 2509–2530, https://doi.org/10.5194/bg-7-2509-2010, 2010.
Barott, K. L., Williams, G. J., Vermeij, M. J., Harris, J., Smith, J. E., Rohwer, F. L., and Sandin, S. A.: Natural history of coral–algae competition across a gradient of human activity in the Line Islands, Mar. Ecol. Prog. Ser., 460, 1–12, 2012.
Bonin, P. C. and Michotey, V. D.: Nitrogen budget in a microbial mat in the Camargue (southern France), Mar. Ecol. Prog. Ser., 322, 75–84, 2006.
Bellwood, D. R., Hoey, A. S., and Choat, J. H.: Limited functional redundancy in high diversity systems: resilience and ecosystem function on coral reefs, Ecol. Lett., 6, 281–285, 2003.
Bellwood, D. R., Streit, R. P., Brandl, S. J., and Tebbett, S. B.: The meaning of the term “function” in ecology: a coral reef perspective, edited by: Wolfe, K., Anthony, K., and Babcock, R., Funct. Ecol., 33, 948–961, 2019.
Brandl, S. J., Rasher, D. B., Côté, I. M., Casey, J. M., Darling, E. S., Lefcheck, J. S., and Duffy, J. E.: Coral reef ecosystem functioning: eight core processes and the role of biodiversity, Front. Ecol. Environ., 17, 445–454, 2019.
Brocke, H. J., Wenzhoefer, F., de Beer, D., Mueller, B., van Duyl, F. C., and Nugues, M. M.: High dissolved organic carbon release by benthic cyanobacterial mats in a Caribbean reef ecosystem, Sci. Rep., 5, 8852, https://doi.org/10.1038/srep08852, 2015.
Brocke, H. J., Piltz, B., Herz, N., Abed, R. M., Palinska, K. A., John, U., den Haan, J., de Beer, D., and Nugues, M. M.: Nitrogen fixation and diversity of benthic cyanobacterial mats on coral reefs in Curaçao, Coral Reefs, 37, 861–874, 2018.
Burman, S. G., Aronson, R. B., and van Woesik, R.: Biotic homogenization of coral assemblages along the Florida reef tract, Mar. Ecol. Prog. Ser., 467, 89–96, 2012.
Capone, D. G., Dunham, S. E., Horrigan, S. G., and Duguay, L. E.: Microbial nitrogen transformations in unconsolidated coral reef sediments, Mar. Ecol. Prog. Ser., 18, 75–88, 1992.
Chen, P. Y., Chen, C. C., Chu, L. F., and McCarl, B.: Evaluating the economic damage of climate change on global coral reefs, Global Environ. Chang., 30, 12–20, https://doi.org/10.1016/j.gloenvcha.2014.10.011, 2015.
Clavel, J., Julliard, R., and Devictor, V.: Worldwide decline of specialist species: toward a global functional homogenization?, Front. Ecol. Environ., 9, 222–228, 2011.
Clements, K. D., German, D. P., Piché, J., Tribollet, A., and Choat, J. H.: Integrating ecological roles and trophic diversification on coral reefs: multiple lines of evidence identify parrotfishes as microphages, Biol. J. Linn. Soc., 120, 729–751, 2016.
Courtney, T. A., Andersson, A. J., Bates, N. R., Collins, A., Cyronak, T., de Putron, S. J., Eyre, B. D., Garley, R., Hochberg, E. J., Johnson, R., and Musielewicz, S.: Comparing chemistry and census-based estimates of net ecosystem calcification on a rim reef in Bermuda, Front. Mar. Sci., 3, 181, https://doi.org/10.3389/fmars.2016.00181, 2016.
Cramer, K., Donovan, M., Jackson, J., Greenstein, B., Korpanty, C., Cook, G., and Pandolfi, J.: The transformation of Caribbean coral communities since humans, Authorea Preprints, https://doi.org/10.22541/au.161048962.21724991/v1, 2021.
Cyronak, T., Andersson, A. J., Langdon, C., Albright, R., Bates, R., Caldeira, K., Carlton, R., Corredor, J. E., Dunbar, R. B., Enochs, I., Erez, J., Eyre, B. D., Gattuso, J., Lantz, C., Lazar, B., Manzello, D., Mcmahon, A., Mele, M., Page, H. N., Santos, I. R., Schulz, K. G., Shaw, E., and Silverman, J.: Taking the metabolic pulse of the world's coral reefs, PloS one, 13, 1–17, 2018.
Darling, E. S., Alvarez-Filip, L., Oliver, T. A., McClanahan, T. R., and Côté, I. M.: Evaluating life-history strategies of reef corals from species traits, Ecol. Lett., 15, 1378–1386, 2012.
De'ath, G., Fabricius, K. E., Sweatman, H., and Puotinen, M.: The 27 year decline of coral cover on the Great Barrier Reef and its causes, P. Natl. Acad. Sci. USA, ., 109, 17995–17999, https://doi.org/10.1073/pnas.1208909109, 2012.
de Bakker, D. M., Meesters, E. H., Bak, R. P. M., Nieuwland, G., and Van Duyl, F. C.: Long-term Shifts in Coral Communities On Shallow to Deep Reef Slopes of Curaçao and Bonaire: Are There Any Winners?, Front. Mar. Sci., 3, 1–14, https://doi.org/10.3389/fmars.2016.00247, 2016.
de Bakker, D. M., van Duyl, F. C., Bak, R. P. M., Nugues, M. M., Nieuwland, G., and Meesters, E. H.: 40 Years of benthic community change on the Caribbean reefs of Curaçao and Bonaire: the rise of slimy cyanobacterial mats, Coral Reefs, Springer, Berlin, Heidelberg, 36, 355–367, https://doi.org/10.1007/s00338-016-1534-9, 2017.
de Bakker, D. M., Webb, A. E., van den Bogaart, L. A., van Heuven, S. M., Meesters, E. H., and van Duyl, F. C.: Quantification of chemical and mechanical bioerosion rates of six Caribbean excavating sponge species found on the coral reefs of Curaçao, PloS one, 13, e0197824, https://doi.org/10.1371/journal.pone.0197824, 2018.
de Bakker, D. M., van Duyl, F. C., Perry, C. T., and Meesters, E. H.: Extreme spatial heterogeneity in carbonate accretion potential on a Caribbean fringing reef linked to local human disturbance gradients, Glob. Change Biol., 25, 4092–4104, 2019.
den Haan, J., Huisman, J., Brocke, H. J., Goehlich, H., Latijnhouwers, K. R., Van Heeringen, S., Honcoop, S. A., Bleyenberg, T. E., Schouten, S., Cerli, C., and Hoitinga, L.: Nitrogen and phosphorus uptake rates of different species from a coral reef community after a nutrient pulse, Sci. Rep., 6, 1–13, 2016.
Dickson, A. G., Sabine, C. L., and Christian, J. R.: Guide to best practices for ocean CO2 measurements, North Pacific Marine Science Organization, PICES Special Publication 3, Sydney, Canada, 2007.
Dinsdale, E. A. and Rohwer, F.: Fish or germs? Microbial dynamics associated with changing trophic structures on coral reefs, in: Coral reefs: an ecosystem in transition, 231–240, Springer, Dordrecht, 2011.
Dove, S. G., Kline, D. I., Pantos, O., Angly, F. E., Tyson, G. W., and Hoegh-Guldberg, O.: Future reef decalcification under a business-as-usual CO2 emission scenario, PNAS, 110, 15342–15347, 2013.
Dove, S. G., Brown, K. T., Van Den Heuvel, A., Chai, A., and Hoegh-Guldberg, O.: Ocean warming and acidification uncouple calcification from calcifier biomass which accelerates coral reef decline, Communications Earth & Environment, 1, 1–9, 2020.
Eyre, B. D., Santos, I. R., and Maher, D. T.: Seasonal, daily and diel N2 effluxes in permeable carbonate sediments, Biogeosciences, 10, 2601–2615, 2013.
Gardner, T. A., Côté, I. M., Gill, J. A., Grant, A., and Watkinson, A. R.: Long-term Regional-wide declining in Caribbean corals, Science, 301, 958–960, https://doi.org/10.1126/science.1086050, 2003.
Gattuso, J.-P., Epitalon, J.-M. Lavigne, H., and Orr, J.: seacarb: seawater carbonate chemistry, R package version 3.3.0, https://doi.org/10.5281/zenedo.4600014, 2018.
Haas, A. F., Nelson, C. E., Kelly, L. W., Carlson, C. A., Rohwer, F., Leichter, J. J., Wyatt, A., and Smith, J. E.: Effects of coral reef benthic primary producers on dissolved organic carbon and microbial activity, PloS one, 6, e27973, https://doi.org/10.1371/journal.pone.0027973, 2011.
Haas, A. F., Nelson, C. E., Rohwer, F., Wegley-Kelly, L., Quistad, S. D., Carlson, C. A., Leichter, J. J., Hatay, M., and Smith, J. E.: Influence of coral and algal exudates on microbially mediated reef metabolism, PeerJ, 1, e108, https://doi.org/10.7717/peerj.108, 2013.
Haas, A. F., Fairoz, M. F., Kelly, L. W., Nelson, C. E., Dinsdale, E. A., Edwards, R. A., Giles, S., Hatay, M., Hisakawa, N., Knowles, B., and Lim, Y. W.: Global microbialization of coral reefs, Nat. Microbiol., 1, 1–7, 2016.
Hörnlein, C., Confurius-Guns, V., Stal, L. J., and Bolhuis, H.: Daily rhythmicity in coastal microbial mats, NPJ Biofilms Microbiomes, 4, 1–11, 2018.
Hughes, T. P.: Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef, Science, 265, 1547–1551, 1994.
Hydes, D. J., Aoyama, M., Aminot, A., Bakker, K., Becker, S., Coverly, S., Daniel, A., Dickson, A. G., Grosso, O., Kerouel, R., Van Ooijen, J., Sato, K., Tanhua, T., Woodward, M., and Zhang, J. Z.: Determination of dissolved nutrients (N, P, Si) in seawater with high precision and inter-comparability using gas-segmented continuous flow analysers, The GO-SHIP Repeart Hydrography Manual: A Collection of Expert Reports and Guidelines, 1–87, https://doi.org/10.25607/OBP-555, 2010.
Jackson, J. B. C., Donovan, M. K., Cramer, K. L., and Lam, V.: Status and Trends of Caribbean Coral Reefs: 1970–2012, GCRMN, IUCN, Gland, Switzerland, 306, https://doi.org/10.1242/jeb.061267, 2014.
Karcher, D. B., Roth, F., Carvalho, S., El-Khaled, Y. C., Tilstra, A., Kürten, B., Struck, U., Jones, B. H., and Wild, C.: Nitrogen eutrophication particularly promotes turf algae in coral reefs of the central Red Sea, PeerJ, 8, e8737, https://doi.org/10.7717/peerj.8737, 2020.
Kelly, L. W., Nelson, C. E., Haas, A. F., Naliboff, D. S., Calhoun, S., Carlson, C. A., Edwards, R. A., Fox, M. D., Hatay, M., Johnson, M. D., and Kelly, E. L.: Diel population and functional synchrony of microbial communities on coral reefs, Nat. Commun., 10, 1–9, 2019.
Kline, D. I., Teneva, L., Schneider, K., Miard, T., Chai, A., Marker, M., Headley, K., Opdyke, B., Nash, M., Valetich, M., and Caves, J. K.: A short-term in situ CO2 enrichment experiment on Heron Island (GBR), Sci. Rep., 2, 1–9, 2012.
Koop, K., Booth, D., Broadbent, A., Brodie, J., Bucher, D., Capone, D., Coll, J., Dennison, W., Erdmann, M., Harrison, P., Hoegh-Guldberg, O., Hutchings, P., Jones, G. B., Larkum, A. W. D., O'Neil, J., Steven, A., Tentori, E., Ward, S., Williamson, J., and Yellowlees, D.: ENCORE: The effect of nutrient enrichment on coral reefs. Synthesis of results and conclusions, Mar. Pollut. Bull., 42, 91–120, https://doi.org/10.1016/S0025-326X(00)00181-8, 2001.
Koweek, D., Dunbar, R. B., Price, N., Mucciarone, D., and Teneva, L.: Environmental and ecological controls of coral community metabolism on Palmyra Atoll, Coral Reefs, 34, 339–351, https://doi.org/10.1007/s00338-014-1217-3, 2015.
Kwon, G., Le, L. T., Jeon, J., Noh, J., Jang, Y., Kang, D., and Jahng, D.: Effects of light and mass ratio of microalgae and nitrifiers on the rates of ammonia oxidation and nitrate production, Biochem. Eng. J., 161, 107656, https://doi.org/10.1016/j.bej.2020.107656, 2020.
Langdon, C. and Atkinson, M. J.: Effect of elevated pCO2 on photosynthesis and calcification of corals and interactions with seasonal change in temperature/ irradiance and nutrient enrichment, J. Geophys. Res.-Oceans, 110, 1–16, https://doi.org/10.1029/2004JC002576, 2005.
Liu, X., Byrne, R. H., Lindemuth, M., Easley, R., and Mathis, J. T.: An automated procedure for laboratory and shipboard spectrophotometric measurements of seawater alkalinity: Continuously monitored single-step acid additions, Mar. Chem., 174, 141–146, https://doi.org/10.1016/j.marchem.2015.06.008, 2015.
Matsuzaki, S. I. S., Sasaki, T., and Akasaka, M.: Consequences of the introduction of exotic and translocated species and future extirpations on the functional diversity of freshwater fish assemblages, Glob. Ecol. Biogeogr., 22, 1071–1082, 2013.
McGill, B. J., Dornelas, M., Gotelli, N. J., and Magurran, A. E.: Fifteen forms of biodiversity trend in the Anthropocene, Trends Ecol. Evol., 30, 104–113, 2015.
McGillis, W. R., Langdon, C., Loose, B., Yates, K. K., and Corredor, J.: Productivity of a coral reef using boundary layer and enclosure methods, Geophys. Res. Lett, 38, 1–5, 2011.
McWilliam, M., Hoogenboom, M. O., Baird, A. H., Kuo, C. Y., Madin, J. S., and Hughes, T. P.: Biogeographical disparity in the functional diversity and redundancy of corals, P. Natl. Acad. Sci. USA, 115, 3084–3089, 2018.
Moberg, F. and Folke, C.: Ecological goods and services of coral reef ecosystems, Ecol. Econ., 29, 215–233, 1999.
Muehllehner, N., Langdon, C., Venti, A., and Kadko, D.: Dynamics of carbonate chemistry, production, and calcification of the Florida Reef Tract (2009–2010): Evidence for seasonal dissolution, Global Biogeochem. Cy., 30, 661–688, https://doi.org/10.1002/2015GB005327, 2016.
Mueller, B., Goeij, J. M. De, Vermeij, M. J. A., Mulders, Y., Ent, E. Van Der, Ribes, M., and van Duyl, F. C.: Natural Diet of Coral-Excavating Sponges Consists Mainly of Dissolved Organic Carbon (DOC), PloS one, 9, e90152, https://doi.org/10.1371/journal.pone.0090152, 2014.
Mueller, B., Den Haan, J., Visser, P. M., Vermeij, M. J., and Van Duyl, F. C.: Effect of light and nutrient availability on the release of dissolved organic carbon (DOC) by Caribbean turf algae, Sci. Rep., 6, 1–9, 2016.
Nelson, C. E., Goldberg, S. J., Kelly, L. W., Haas, A. F., Smith, J. E., Rohwer, F., and Carlson, C. A.: Coral and macroalgal exudates vary in neutral sugar composition and differentially enrich reef bacterioplankton lineages, ISME J., 7, 962–979, 2013.
Oliver, T. H., Heard, M. S., Isaac, N. J., Roy, D. B., Procter, D., Eigenbrod, F., Freckleton, R., Hector, A., Orme, C. D. L., Petchey, O. L., and Proença, V.: Biodiversity and resilience of ecosystem functions, Trends Ecol. Evol., 30, 673–684, 2015.
O'Neil, J. M. and Capone, D. G.: Nitrogen cycling in coral reef environments, Nitrogen in the marine environment, edited by: Capone, D. G., Bronk, D. A., Mulholland, M. R., and Carpenter, E. J., 949–989, https://doi.org/10.1016/B978-0-12-372522-6.00021-9, 2008.
Perry, C. T., Murphy, G. N., Kench, P. S., Smithers, S. G., Edinger, E. N., Steneck, R. S., and Mumby, P. J.: Caribbean-wide decline in carbonate production threatens coral reef growth, Nat. Commun., 4, 1402, https://doi.org/10.1038/ncomms2409, 2013.
Petsch, D. K., Saito, V. S., Landeiro, V. L., Silva, T. S., Bini, L. M., Heino, J., Soininen, J., Tolonen, K. T., Jyrkänkallio-Mikkola, J., Pajunen, V., and Siqueira, T.: Beta diversity of stream insects differs between boreal and subtropical regions, but land use does not generally cause biotic homogenization, Freshw. Sci., 40, 53–64, https://doi.org/10.1086/712565, 2020.
Pfister, C. A. and Altabet, M. A.: Enhanced microbial nitrogen transformations in association with macrobiota from the rocky intertidal, Biogeosciences, 16, 193–206, 2019.
R Core Team: R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, available at: https://www.R-project.org/, last access: 26 August 2020.
Rädecker, N., Pogoreutz, C., Voolstra, C. R., Wiedenmann, J., and Wild, C.: Nitrogen cycling in corals: the key to understanding holobiont functioning?, Trends Microbiol., 23, 490–497, 2015.
Roff, G. and Mumby, P. J.: Global disparity in the resilience of coral reefs, Elsevier Ltd., Trends Ecol. Evol., 27, 404–413, https://doi.org/10.1016/j.tree.2012.04.007, 2012.
Romanó de Orte, M., Koweek, D. A., Cyronak, T., Takeshita, Y., Griffin, A., Wolfe, K., Szmant, A., Whitehead, R., Albright, R., and Caldeira, K.: Unexpected role of communities colonizing dead coral substrate in the calcification of coral reefs, Limnol. Oceanogr., 66, 1793–1803, 2021.
Roth, F., Rädecker, N., Carvalho, S., Duarte, C. M., Saderne, V., Anton, A., Silva, L., Calleja, M. L., Morán, X. A. G., Voolstra, C. R., and Kürten, B.: High summer temperatures amplify functional differences between coral-and algae-dominated reef communities, Ecology, 102, e03226, https://doi.org/10.1002/ecy.3226, 2020.
Roth, F., El-Khaled, Y. C., Karcher, D. B., Rädecker, N., Carvalho, S., Duarte, C. M., Silva, L., Calleja, M. L., Morán, X. A. G., Jones, B. H., and Voolstra, C. R.: Nutrient pollution enhances productivity and framework dissolution in algae-but not in coral-dominated reef communities, Mar. Pollut. Bull., 168, 112444, https://doi.org/10.1016/j.marpolbul.2021.112444, 2021.
Scheffers, S. R., Nieuwland, G., Bak, R. P. M., and Van Duyl, F. C.: Removal of bacteria and nutrient dynamics within the coral reef framework of Curaçao (Netherlands Antilles), Coral Reefs, 23, 413–422, 2004.
Shaw, E. C., Phinn, S. R, Tilbrook, B., and Steven, A.: Comparability of slack water and Lagrangian flow respirometry methods for community metabolic measurements, PloS one, 9, e112161, https://doi.org/10.1371/journal.pone.0112161, 2014.
Shaw, E. C., Phinn, S. R., Tilbrook, B., and Steven, A.: Natural in situ relationships suggest coral reef calcium carbonate production will decline with ocean acidification. Limnol. Oceanogr., 60, 777–788, https://doi.org/10.1002/lno.10048, 2015.
Silverman, J., Lazar, B., and Erez, J.: Effect of aragonite saturation, temperature, and nutrients on the community calcification rate of a coral reef, J. Geophys. Res.-Oceans, 112, 1–14, https://doi.org/10.1029/2006JC003770, 2007.
Soetaert, K., Hofmann, A. F., Middelburg, J. J., Meysman, F. J., and Greenwood, J.: The effect of biogeochemical processes on pH, Mar. Chem., 106, 380–401, 2007.
Soetaert, K. and Petzoldt, T.: Inverse modelling, sensitivity and Monte Carlo analysis in R using package FME, J. Stat. Softw, 33, 1–28, 2010.
Soetaert, K. E., Petzoldt, T., and Setzer, R. W.: Solving differential equations in R: package deSolve, J. Stat. Softw, 33, 1–25, https://doi.org/10.18637/jss, 2010.
Sonnier, G., Johnson, S. E., Amatangelo, K. L., Rogers, D. A., and Waller, D. M.: Is taxonomic homogenization linked to functional homogenization in temperate forests?, Glob. Ecol. Biogeogr., 23, 894–902, 2014.
Stoll, M. H. C., Bakker, K., Nobbe, G. H., and Haese, R. R.: Continuous-flow analysis of dissolved inorganic carbon content in seawater, Anal. Chem., 73, 4111–4116, https://doi.org/10.1021/ac010303r, 2001.
Takeshita, Y., McGillis, W., Briggs, E. M., Carter, A. L., Donham, E. M., Martz, T. R., Price, N. N., and Smith, J. E.: Assessment of net community production and calcification of a coral reef using a boundary layer approach, J. Geophys. Res.-Oceans, 121, 5655–5671, 2016.
Tobias, N. and Monika, W.: Does taxonomic homogenization imply functional homogenization in temperate forest herb layer communities?, Plant Ecol., 213, 431–443, 2012.
van Duyl, F. C.: Atlas of the living reefs of Curaçao and Bonaire (Netherlands Antilles), 117, Netherlands Foundation for Scientific Research in Surinam and the Netherlands Antilles, Utrecht, 1985.
van Heuven, S. M. A. C., Webb, A. E., Bakker, D. M. De, Meesters, E., Duyl, F. C. Van, Reichart, G., and Lennart, J.: In-situ incubation of a coral patch for community-scale assessment of metabolic and chemical processes on a reef slope, PeerJ, 6, 1–24, https://doi.org/10.7717/peerj.5966, 2018.
Vermeij, M. J., Van Moorselaar, I., Engelhard, S., Hörnlein, C., Vonk, S. M., and Visser, P. M.: The effects of nutrient enrichment and herbivore abundance on the ability of turf algae to overgrow coral in the Caribbean, PloS one, 5, e14312, https://doi.org/10.1371/journal.pone.0014312, 2010.
Webb, A. E., van Heuven, S. M., de Bakker, D. M., van Duyl, F. C., Reichart, G. J., and de Nooijer, L. J.: Combined effects of experimental acidification and eutrophication on reef sponge bioerosion rates, Front. Mar. Sci., 4, 311, https://doi.org/10.3389/fmars.2017.00311, 2017.
Webb, K. L. and Wiebe, W. J.: Nitrification on a coral reef, Can. J. Microbiol., 21, 1427–1431, 1975.
Weber, L. and Apprill, A.: Diel, daily, and spatial variation of coral reef seawater microbial communities, PloS one, 15, e0229442, https://doi.org/10.1371/journal.pone.0229442, 2020.
White, H. J., Montgomery, W. I., Storchová, L., Hořák, D., and Lennon, J. J.: Does functional homogenization accompany taxonomic homogenization of British birds and how do biotic factors and climate affect these processes?, Ecol. Evol., 8, 7365–7377, 2018.
Wolfe, K., Anthony, K., Babcock, R. C., Bay, L., Bourne, D. G., Burrows, D., Byrne, M., Deaker, D. J., Diaz-Pulido, G., Frade, P. R., and Gonzalez-Rivero, M.: Priority species to support the functional integrity of coral reefs. Oceanogr. Mar. Biol., 58, 179–318, https://doi.org/10.1201/9780429351495-5, 2020.
Yates, K. K. and Halley, R. B.: Measuring coral reef community metabolism using new benthic chamber technology, Coral Reefs, 22, 247–255, https://doi.org/10.1007/s00338-003-0314-5, 2003.
Short summary
The biogeochemical behaviour of shallow reef communities is quantified to better understand the impact of habitat degradation and species composition shifts on reef functioning. The reef communities investigated barely support reef functions that are usually ascribed to conventional coral reefs, and the overall biogeochemical behaviour is found to be similar regardless of substrate type. This suggests a decrease in functional diversity which may therefore limit services provided by this reef.
The biogeochemical behaviour of shallow reef communities is quantified to better understand the...
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