Articles | Volume 15, issue 13
https://doi.org/10.5194/bg-15-4003-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
https://doi.org/10.5194/bg-15-4003-2018
© Author(s) 2018. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article
| 
03 Jul 2018
Research article |
| 03 Jul 2018
| 03 Jul 2018
Inferring the effects of sink strength on plant carbon balance processes from experimental measurements
Kashif Mahmud
CORRESPONDING AUTHOR
Hawkesbury Institute for the Environment, Western Sydney University,
Locked Bag 1797, Penrith, NSW 2751, Australia
Belinda E. Medlyn
Hawkesbury Institute for the Environment, Western Sydney University,
Locked Bag 1797, Penrith, NSW 2751, Australia
Remko A. Duursma
Hawkesbury Institute for the Environment, Western Sydney University,
Locked Bag 1797, Penrith, NSW 2751, Australia
Courtney Campany
Hawkesbury Institute for the Environment, Western Sydney University,
Locked Bag 1797, Penrith, NSW 2751, Australia
Department of Biology, Colgate University, NY 13346, USA
Martin G. De Kauwe
ARC Centre of Excellence for Climate Extremes, University of New South
Wales, Sydney, NSW 2052, Australia
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This study explores the relationship between drip water and rainfall in a SW Australian karst, where both intra- and interannual hydrological variations are strongly controlled by seasonal variations in recharge. The hydrological behavior of cave drips is examined at daily resolution with respect to mean discharge and the flow variation. We demonstrate that the analysis of the time series produced by cave drip loggers generates useful hydrogeological information that can be applied generally.
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Caves offer a natural inception point to observe both the long-term groundwater recharge and the preferential movement of water through the unsaturated zone of such limestone. In this study, we develop a method that combines automated drip rate logging systems and remote sensing techniques to quantify the infiltration processes within a cave.
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Sophie V. J. van der Horst, Andrew J. Pitman, Martin G. De Kauwe, Anna Ukkola, Gab Abramowitz, and Peter Isaac
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Martin G. De Kauwe, Belinda E. Medlyn, Andrew J. Pitman, John E. Drake, Anna Ukkola, Anne Griebel, Elise Pendall, Suzanne Prober, and Michael Roderick
Biogeosciences, 16, 903–916, https://doi.org/10.5194/bg-16-903-2019, https://doi.org/10.5194/bg-16-903-2019, 2019
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Anthony P. Walker, Ming Ye, Dan Lu, Martin G. De Kauwe, Lianhong Gu, Belinda E. Medlyn, Alistair Rogers, and Shawn P. Serbin
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Ned Haughton, Gab Abramowitz, Martin G. De Kauwe, and Andy J. Pitman
Biogeosciences, 15, 4495–4513, https://doi.org/10.5194/bg-15-4495-2018, https://doi.org/10.5194/bg-15-4495-2018, 2018
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This project explores predictability in energy, water, and carbon fluxes in the free-use Tier 1 of the FLUXNET 2015 dataset using a uniqueness metric based on comparison of locally and globally trained models. While there is broad spread in predictability between sites, we found strikingly few strong patterns. Nevertheless, these results can contribute to the standardisation of site selection for land surface model evaluation and help pinpoint regions that are ripe for further FLUXNET research.
Rebecca J. Oliver, Lina M. Mercado, Stephen Sitch, David Simpson, Belinda E. Medlyn, Yan-Shih Lin, and Gerd A. Folberth
Biogeosciences, 15, 4245–4269, https://doi.org/10.5194/bg-15-4245-2018, https://doi.org/10.5194/bg-15-4245-2018, 2018
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Potential gains in terrestrial carbon sequestration over Europe from elevated CO2 can be partially offset by concurrent rises in tropospheric O3. The land surface model JULES was run in a factorial suite of experiments showing that by 2050 simulated GPP was reduced by 4 to 9 % due to plant O3 damage. Large regional variations exist with larger impacts identified for temperate compared to boreal regions. Plant O3 damage was greatest over the twentieth century and declined into the future.
Alexandre A. Renchon, Anne Griebel, Daniel Metzen, Christopher A. Williams, Belinda Medlyn, Remko A. Duursma, Craig V. M. Barton, Chelsea Maier, Matthias M. Boer, Peter Isaac, David Tissue, Victor Resco de Dios, and Elise Pendall
Biogeosciences, 15, 3703–3716, https://doi.org/10.5194/bg-15-3703-2018, https://doi.org/10.5194/bg-15-3703-2018, 2018
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We report the seasonality of net ecosystem–atmosphere CO2 exchange (NEE) in a temperate evergreen broadleaved forest in Sydney, Australia. We investigated how carbon exchange varied with climatic drivers and canopy dynamics (leaf area index, litter fall). We found that our site acted as a net source of carbon in summer and a net sink in winter. Ecosystem respiration (ER) drove NEE seasonality, as the seasonal amplitude of ER was greater than gross primary productivity.
Kashif Mahmud, Gregoire Mariethoz, Andy Baker, and Pauline C. Treble
Hydrol. Earth Syst. Sci., 22, 977–988, https://doi.org/10.5194/hess-22-977-2018, https://doi.org/10.5194/hess-22-977-2018, 2018
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This study explores the relationship between drip water and rainfall in a SW Australian karst, where both intra- and interannual hydrological variations are strongly controlled by seasonal variations in recharge. The hydrological behavior of cave drips is examined at daily resolution with respect to mean discharge and the flow variation. We demonstrate that the analysis of the time series produced by cave drip loggers generates useful hydrogeological information that can be applied generally.
Martin G. De Kauwe, Belinda E. Medlyn, Jürgen Knauer, and Christopher A. Williams
Biogeosciences, 14, 4435–4453, https://doi.org/10.5194/bg-14-4435-2017, https://doi.org/10.5194/bg-14-4435-2017, 2017
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Understanding the sensitivity of transpiration to stomatal conductance is critical to simulating the water cycle. This sensitivity is a function of the degree of coupling between the vegetation and the atmosphere. We combined an extensive literature summary with estimates of coupling derived from FLUXNET data. We found notable departures from the values previously reported. These data form a model benchmarking metric to test existing coupling assumptions.
Anna M. Ukkola, Ned Haughton, Martin G. De Kauwe, Gab Abramowitz, and Andy J. Pitman
Geosci. Model Dev., 10, 3379–3390, https://doi.org/10.5194/gmd-10-3379-2017, https://doi.org/10.5194/gmd-10-3379-2017, 2017
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Flux towers measure energy, carbon dioxide and water vapour fluxes. These data have become essential for evaluating land surface models (LSMs) – key tools for projecting future climate change. However, these data as released are not immediately usable with LSMs and must be post-processed to change units, screened for missing data and gap-filling. We present an open-source R package that transforms flux tower measurements into a format directly usable by LSMs.
Yiqi Luo, Zheng Shi, Xingjie Lu, Jianyang Xia, Junyi Liang, Jiang Jiang, Ying Wang, Matthew J. Smith, Lifen Jiang, Anders Ahlström, Benito Chen, Oleksandra Hararuk, Alan Hastings, Forrest Hoffman, Belinda Medlyn, Shuli Niu, Martin Rasmussen, Katherine Todd-Brown, and Ying-Ping Wang
Biogeosciences, 14, 145–161, https://doi.org/10.5194/bg-14-145-2017, https://doi.org/10.5194/bg-14-145-2017, 2017
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Climate change is strongly regulated by land carbon cycle. However, we lack the ability to predict future land carbon sequestration. Here, we develop a novel framework for understanding what determines the direction and rate of future change in land carbon storage. The framework offers a suite of new approaches to revolutionize land carbon model evaluation and improvement.
Anna M. Ukkola, Andy J. Pitman, Mark Decker, Martin G. De Kauwe, Gab Abramowitz, Jatin Kala, and Ying-Ping Wang
Hydrol. Earth Syst. Sci., 20, 2403–2419, https://doi.org/10.5194/hess-20-2403-2016, https://doi.org/10.5194/hess-20-2403-2016, 2016
K. Mahmud, G. Mariethoz, A. Baker, P. C. Treble, M. Markowska, and E. McGuire
Hydrol. Earth Syst. Sci., 20, 359–373, https://doi.org/10.5194/hess-20-359-2016, https://doi.org/10.5194/hess-20-359-2016, 2016
Short summary
Short summary
Caves offer a natural inception point to observe both the long-term groundwater recharge and the preferential movement of water through the unsaturated zone of such limestone. In this study, we develop a method that combines automated drip rate logging systems and remote sensing techniques to quantify the infiltration processes within a cave.
M. G. De Kauwe, S.-X. Zhou, B. E. Medlyn, A. J. Pitman, Y.-P. Wang, R. A. Duursma, and I. C. Prentice
Biogeosciences, 12, 7503–7518, https://doi.org/10.5194/bg-12-7503-2015, https://doi.org/10.5194/bg-12-7503-2015, 2015
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Future climate change has the potential to increase drought in many regions of the globe. Recent data syntheses show that drought sensitivity varies considerably among plants from different climate zones, but state-of-the-art models currently assume the same drought sensitivity for all vegetation. Our results indicate that models will over-estimate drought impacts in drier climates unless different sensitivity of vegetation to drought is taken into account.
J. Kala, M. G. De Kauwe, A. J. Pitman, R. Lorenz, B. E. Medlyn, Y.-P Wang, Y.-S Lin, and G. Abramowitz
Geosci. Model Dev., 8, 3877–3889, https://doi.org/10.5194/gmd-8-3877-2015, https://doi.org/10.5194/gmd-8-3877-2015, 2015
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We implement a new stomatal conductance scheme within a land surface model coupled to a global climate model. The new model differs from the default in that it allows model parameters to vary by the different plant functional types, derived from global synthesis of observations. We show that the new scheme results in improvements in the model climatology and improves existing biases in warm temperature extremes by up to 10-20% over the boreal forests during summer.
M. G. De Kauwe, J. Kala, Y.-S. Lin, A. J. Pitman, B. E. Medlyn, R. A. Duursma, G. Abramowitz, Y.-P. Wang, and D. G. Miralles
Geosci. Model Dev., 8, 431–452, https://doi.org/10.5194/gmd-8-431-2015, https://doi.org/10.5194/gmd-8-431-2015, 2015
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Stomatal conductance affects the fluxes of carbon, energy and water between the vegetated land surface and the atmosphere. We test an implementation of an optimal stomatal conductance model within the CABLE land surface model (LSM). The new implementation resulted in a large reduction in the annual fluxes of transpiration across evergreen needleleaf, tundra and C4 grass regions. We conclude that optimisation theory can yield a tractable approach to predicting stomatal conductance in LSMs.
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Potassium limitation of forest productivity – Part 2: CASTANEA-MAESPA-K shows a reduction in photosynthesis rather than a stoichiometric limitation of tissue formation
Global evaluation of terrestrial biogeochemistry in the Energy Exascale Earth System Model (E3SM) and the role of the phosphorus cycle in the historical terrestrial carbon balance
Assessing carbon storage capacity and saturation across six central US grasslands using data–model integration
Optimizing the carbonic anhydrase temperature response and stomatal conductance of carbonyl sulfide leaf uptake in the Simple Biosphere model (SiB4)
Exploring environmental and physiological drivers of the annual carbon budget of biocrusts from various climatic zones with a mechanistic data-driven model
Improved process representation of leaf phenology significantly shifts climate sensitivity of ecosystem carbon balance
Mapping of ESA's Climate Change Initiative land cover data to plant functional types for use in the CLASSIC land model
Exploring the impacts of unprecedented climate extremes on forest ecosystems: hypotheses to guide modeling and experimental studies
Effect of droughts and climate change on future soil weathering rates in Sweden
Information content in time series of litter decomposition studies and the transit time of litter in arid lands
Long-term changes of nitrogen leaching and the contributions of terrestrial nutrient sources to lake eutrophication dynamics on the Yangtze Plain of China
Towards an ensemble-based evaluation of land surface models in light of uncertain forcings and observations
Vilna Tyystjärvi, Tiina Markkanen, Leif Backman, Maarit Raivonen, Antti Leppänen, Xuefei Li, Paavo Ojanen, Kari Minkkinen, Roosa Hautala, Mikko Peltoniemi, Jani Anttila, Raija Laiho, Annalea Lohila, Raisa Mäkipää, and Tuula Aalto
Biogeosciences, 21, 5745–5771, https://doi.org/10.5194/bg-21-5745-2024, https://doi.org/10.5194/bg-21-5745-2024, 2024
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Drainage of boreal peatlands strongly influences soil methane fluxes, with important implications for climatic impacts. Here we simulate methane fluxes in forestry-drained and restored peatlands during the 21st century. We found that restoration turned peatlands into a source of methane, but the magnitude varied regionally. In forests, changes in the water table level influenced methane fluxes, and in general, the sink was weaker under rotational forestry compared to continuous cover forestry.
Matthew Forrest, Jessica Hetzer, Maik Billing, Simon P. K. Bowring, Eric Kosczor, Luke Oberhagemann, Oliver Perkins, Dan Warren, Fátima Arrogante-Funes, Kirsten Thonicke, and Thomas Hickler
Biogeosciences, 21, 5539–5560, https://doi.org/10.5194/bg-21-5539-2024, https://doi.org/10.5194/bg-21-5539-2024, 2024
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Climate change is causing an increase in extreme wildfires in Europe, but drivers of fire are not well understood, especially across different land cover types. We used statistical models with satellite data, climate data, and socioeconomic data to determine what affects burning in cropland and non-cropland areas of Europe. We found different drivers of burning in cropland burning vs. non-cropland to the point that some variables, e.g. population density, had the complete opposite effects.
Bettina K. Gier, Manuel Schlund, Pierre Friedlingstein, Chris D. Jones, Colin Jones, Sönke Zaehle, and Veronika Eyring
Biogeosciences, 21, 5321–5360, https://doi.org/10.5194/bg-21-5321-2024, https://doi.org/10.5194/bg-21-5321-2024, 2024
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This study investigates present-day carbon cycle variables in CMIP5 and CMIP6 simulations. Overall, CMIP6 models perform better but also show many remaining biases. A significant improvement in the simulation of photosynthesis in models with a nitrogen cycle is found, with only small differences between emission- and concentration-based simulations. Thus, we recommend using emission-driven simulations in CMIP7 by default and including the nitrogen cycle in all future carbon cycle models.
Sven Armin Westermann, Anke Hildebrandt, Souhail Bousetta, and Stephan Thober
Biogeosciences, 21, 5277–5303, https://doi.org/10.5194/bg-21-5277-2024, https://doi.org/10.5194/bg-21-5277-2024, 2024
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Plants at the land surface mediate between soil and the atmosphere regarding water and carbon transport. Since plant growth is a dynamic process, models need to consider these dynamics. Two models that predict water and carbon fluxes by considering plant temporal evolution were tested against observational data. Currently, dynamizing plants in these models did not enhance their representativeness, which is caused by a mismatch between implemented physical relations and observable connections.
Kamal Nyaupane, Umakant Mishra, Feng Tao, Kyongmin Yeo, William J. Riley, Forrest M. Hoffman, and Sagar Gautam
Biogeosciences, 21, 5173–5183, https://doi.org/10.5194/bg-21-5173-2024, https://doi.org/10.5194/bg-21-5173-2024, 2024
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Representing soil organic carbon (SOC) dynamics in Earth system models (ESMs) is a key source of uncertainty in predicting carbon–climate feedbacks. Using machine learning, we develop and compare predictive relationships in observations (Obs) and ESMs. We find different relationships between environmental factors and SOC stocks in Obs and ESMs. SOC prediction in ESMs may be improved by representing the functional relationships of environmental controllers in a way consistent with observations.
Jacob A. Nelson, Sophia Walther, Fabian Gans, Basil Kraft, Ulrich Weber, Kimberly Novick, Nina Buchmann, Mirco Migliavacca, Georg Wohlfahrt, Ladislav Šigut, Andreas Ibrom, Dario Papale, Mathias Göckede, Gregory Duveiller, Alexander Knohl, Lukas Hörtnagl, Russell L. Scott, Weijie Zhang, Zayd Mahmoud Hamdi, Markus Reichstein, Sergio Aranda-Barranco, Jonas Ardö, Maarten Op de Beeck, Dave Billesbach, David Bowling, Rosvel Bracho, Christian Brümmer, Gustau Camps-Valls, Shiping Chen, Jamie Rose Cleverly, Ankur Desai, Gang Dong, Tarek S. El-Madany, Eugenie Susanne Euskirchen, Iris Feigenwinter, Marta Galvagno, Giacomo A. Gerosa, Bert Gielen, Ignacio Goded, Sarah Goslee, Christopher Michael Gough, Bernard Heinesch, Kazuhito Ichii, Marcin Antoni Jackowicz-Korczynski, Anne Klosterhalfen, Sara Knox, Hideki Kobayashi, Kukka-Maaria Kohonen, Mika Korkiakoski, Ivan Mammarella, Mana Gharun, Riccardo Marzuoli, Roser Matamala, Stefan Metzger, Leonardo Montagnani, Giacomo Nicolini, Thomas O'Halloran, Jean-Marc Ourcival, Matthias Peichl, Elise Pendall, Borja Ruiz Reverter, Marilyn Roland, Simone Sabbatini, Torsten Sachs, Marius Schmidt, Christopher R. Schwalm, Ankit Shekhar, Richard Silberstein, Maria Lucia Silveira, Donatella Spano, Torbern Tagesson, Gianluca Tramontana, Carlo Trotta, Fabio Turco, Timo Vesala, Caroline Vincke, Domenico Vitale, Enrique R. Vivoni, Yi Wang, William Woodgate, Enrico A. Yepez, Junhui Zhang, Donatella Zona, and Martin Jung
Biogeosciences, 21, 5079–5115, https://doi.org/10.5194/bg-21-5079-2024, https://doi.org/10.5194/bg-21-5079-2024, 2024
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The movement of water, carbon, and energy from the Earth's surface to the atmosphere, or flux, is an important process to understand because it impacts our lives. Here, we outline a method called FLUXCOM-X to estimate global water and CO2 fluxes based on direct measurements from sites around the world. We go on to demonstrate how these new estimates of net CO2 uptake/loss, gross CO2 uptake, total water evaporation, and transpiration from plants compare to previous and independent estimates.
Xin Chen, Tiexi Chen, Xiaodong Li, Yuanfang Chai, Shengjie Zhou, Renjie Guo, and Jie Dai
Biogeosciences, 21, 4285–4300, https://doi.org/10.5194/bg-21-4285-2024, https://doi.org/10.5194/bg-21-4285-2024, 2024
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We provide an ensemble-model-based GPP dataset (ERF_GPP) that explains 85.1 % of the monthly variation in GPP across 170 sites, which is higher than other GPP estimate models. In addition, ERF_GPP improves the phenomenon of “high-value underestimation and low-value overestimation” in GPP estimation to some extent. Overall, ERF_GPP provides a more reliable estimate of global GPP and will facilitate further development of carbon cycle research.
Reza Kusuma Nurrohman, Tomomichi Kato, Hideki Ninomiya, Lea Végh, Nicolas Delbart, Tatsuya Miyauchi, Hisashi Sato, Tomohiro Shiraishi, and Ryuichi Hirata
Biogeosciences, 21, 4195–4227, https://doi.org/10.5194/bg-21-4195-2024, https://doi.org/10.5194/bg-21-4195-2024, 2024
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SPITFIRE (SPread and InTensity of FIRE) was integrated into a spatially explicit individual-based dynamic global vegetation model to improve the accuracy of depicting Siberian forest fire frequency, intensity, and extent. Fires showed increased greenhouse gas and aerosol emissions in 2006–2100 for Representative Concentration Pathways. This study contributes to understanding fire dynamics, land ecosystem–climate interactions, and global material cycles under the threat of escalating fires.
Stefano Manzoni and M. Francesca Cotrufo
Biogeosciences, 21, 4077–4098, https://doi.org/10.5194/bg-21-4077-2024, https://doi.org/10.5194/bg-21-4077-2024, 2024
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Organic carbon and nitrogen are stabilized in soils via microbial assimilation and stabilization of necromass (in vivo pathway) or via adsorption of the products of extracellular decomposition (ex vivo pathway). Here we use a diagnostic model to quantify which stabilization pathway is prevalent using data on residue-derived carbon and nitrogen incorporation in mineral-associated organic matter. We find that the in vivo pathway is dominant in fine-textured soils with low organic matter content.
Huajie Zhu, Xiuli Xing, Mousong Wu, Weimin Ju, and Fei Jiang
Biogeosciences, 21, 3735–3760, https://doi.org/10.5194/bg-21-3735-2024, https://doi.org/10.5194/bg-21-3735-2024, 2024
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Ecosystem carbonyl sulfide (COS) fluxes were employed to optimize GPP estimation across ecosystems with the Biosphere-atmosphere Exchange Process Simulator (BEPS), which was developed for simulating the canopy COS uptake under its state-of-the-art two-leaf modeling framework. Our results showcased the efficacy of COS in improving model prediction and reducing prediction uncertainty of GPP and enhanced insights into the sensitivity, identifiability, and interactions of parameters related to COS.
Moritz Laub, Magdalena Necpalova, Marijn Van de Broek, Marc Corbeels, Samuel Mathu Ndungu, Monicah Wanjiku Mucheru-Muna, Daniel Mugendi, Rebecca Yegon, Wycliffe Waswa, Bernard Vanlauwe, and Johan Six
Biogeosciences, 21, 3691–3716, https://doi.org/10.5194/bg-21-3691-2024, https://doi.org/10.5194/bg-21-3691-2024, 2024
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We used the DayCent model to assess the potential impact of integrated soil fertility management (ISFM) on maize production, soil fertility, and greenhouse gas emission in Kenya. After adjustments, DayCent represented measured mean yields and soil carbon stock changes well and N2O emissions acceptably. Our results showed that soil fertility losses could be reduced but not completely eliminated with ISFM and that, while N2O emissions increased with ISFM, emissions per kilogram yield decreased.
Hazel Cathcart, Julian Aherne, Michael D. Moran, Verica Savic-Jovcic, Paul A. Makar, and Amanda Cole
EGUsphere, https://doi.org/10.5194/egusphere-2024-2371, https://doi.org/10.5194/egusphere-2024-2371, 2024
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Deposition from sulfur and nitrogen pollution can harm ecosystems, and recovery from this type of pollution can take decades or longer. To identify risk to Canadian soils, we created maps showing sensitivity to sulfur and nitrogen pollution. Results show that some ecosystems are at risk from acid and nutrient nitrogen deposition; 10 % of protected areas are receiving acid deposition beyond their damage threshold and 70 % may be receiving nitrogen deposition that could cause biodiversity loss.
Erik Schwarz, Samia Ghersheen, Salim Belyazid, and Stefano Manzoni
Biogeosciences, 21, 3441–3461, https://doi.org/10.5194/bg-21-3441-2024, https://doi.org/10.5194/bg-21-3441-2024, 2024
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The occurrence of unstable equilibrium points (EPs) could impede the applicability of microbial-explicit soil organic carbon models. For archetypal model versions we identify when instability can occur and describe mathematical conditions to avoid such unstable EPs. We discuss implications for further model development, highlighting the important role of considering basic ecological principles to ensure biologically meaningful models.
Sian Kou-Giesbrecht, Vivek K. Arora, Christian Seiler, and Libo Wang
Biogeosciences, 21, 3339–3371, https://doi.org/10.5194/bg-21-3339-2024, https://doi.org/10.5194/bg-21-3339-2024, 2024
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Terrestrial biosphere models can either prescribe the geographical distribution of biomes or simulate them dynamically, capturing climate-change-driven biome shifts. We isolate and examine the differences between these different land cover implementations. We find that the simulated terrestrial carbon sink at the end of the 21st century is twice as large in simulations with dynamic land cover than in simulations with prescribed land cover due to important range shifts in the Arctic and Amazon.
Elizabeth S. Duan, Luciana Chavez Rodriguez, Nicole Hemming-Schroeder, Baptiste Wijas, Habacuc Flores-Moreno, Alexander W. Cheesman, Lucas A. Cernusak, Michael J. Liddell, Paul Eggleton, Amy E. Zanne, and Steven D. Allison
Biogeosciences, 21, 3321–3338, https://doi.org/10.5194/bg-21-3321-2024, https://doi.org/10.5194/bg-21-3321-2024, 2024
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Understanding the link between climate and carbon fluxes is crucial for predicting how climate change will impact carbon sinks. We estimated carbon dioxide (CO2) fluxes from deadwood in tropical Australia using wood moisture content and temperature. Our model predicted that the majority of deadwood carbon is released as CO2, except when termite activity is detected. Future models should also incorporate wood traits, like species and chemical composition, to better predict fluxes.
Daniel Nadal-Sala, Rüdiger Grote, David Kraus, Uri Hochberg, Tamir Klein, Yael Wagner, Fedor Tatarinov, Dan Yakir, and Nadine K. Ruehr
Biogeosciences, 21, 2973–2994, https://doi.org/10.5194/bg-21-2973-2024, https://doi.org/10.5194/bg-21-2973-2024, 2024
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A hydraulic model approach is presented that can be added to any physiologically based ecosystem model. Simulated plant water potential triggers stomatal closure, photosynthesis decline, root–soil resistance increases, and sapwood and foliage senescence. The model has been evaluated at an extremely dry site stocked with Aleppo pine and was able to represent gas exchange, soil water content, and plant water potential. The model also responded realistically regarding leaf senescence.
Patrick Neri, Lianhong Gu, and Yang Song
Biogeosciences, 21, 2731–2758, https://doi.org/10.5194/bg-21-2731-2024, https://doi.org/10.5194/bg-21-2731-2024, 2024
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A first-of-its-kind global-scale model of temperature resilience and tolerance of photosystem II maximum quantum yield informs how plants maintain their efficiency of converting light energy to chemical energy for photosynthesis under temperature changes. Our finding explores this variation across plant functional types and habitat climatology, highlighting diverse temperature response strategies and a method to improve global-scale photosynthesis modeling under climate change.
Liyuan He, Jorge L. Mazza Rodrigues, Melanie A. Mayes, Chun-Ta Lai, David A. Lipson, and Xiaofeng Xu
Biogeosciences, 21, 2313–2333, https://doi.org/10.5194/bg-21-2313-2024, https://doi.org/10.5194/bg-21-2313-2024, 2024
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Soil microbes are the driving engine for biogeochemical cycles of carbon and nutrients. This study applies a microbial-explicit model to quantify bacteria and fungal biomass carbon in soils from 1901 to 2016. Results showed substantial increases in bacterial and fungal biomass carbon over the past century, jointly influenced by vegetation growth and soil temperature and moisture. This pioneering century-long estimation offers crucial insights into soil microbial roles in global carbon cycling.
Tao Chen, Félicien Meunier, Marc Peaucelle, Guoping Tang, Ye Yuan, and Hans Verbeeck
Biogeosciences, 21, 2253–2272, https://doi.org/10.5194/bg-21-2253-2024, https://doi.org/10.5194/bg-21-2253-2024, 2024
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Chinese subtropical forest ecosystems are an extremely important component of global forest ecosystems and hence crucial for the global carbon cycle and regional climate change. However, there is still great uncertainty in the relationship between subtropical forest carbon sequestration and its drivers. We provide first quantitative estimates of the individual and interactive effects of different drivers on the gross primary productivity changes of various subtropical forest types in China.
Pritha Pande, Sam Bland, Nathan Booth, Jo Cook, Zhaozhong Feng, and Lisa Emberson
EGUsphere, https://doi.org/10.5194/egusphere-2024-694, https://doi.org/10.5194/egusphere-2024-694, 2024
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The DO3SE-crop model extends the DO3SE to simulate ozone's impact on crops with modules for ozone uptake, damage, and crop growth from JULES-Crop. It's versatile, suits China's varied agriculture, and improves yield predictions under ozone stress. It is essential for policy, water management, and climate response, it integrates into Earth System Models for a comprehensive understanding of agriculture's interaction with global systems.
Ke Liu, Yujie Wang, Troy S. Magney, and Christian Frankenberg
Biogeosciences, 21, 1501–1516, https://doi.org/10.5194/bg-21-1501-2024, https://doi.org/10.5194/bg-21-1501-2024, 2024
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Stomata are pores on leaves that regulate gas exchange between plants and the atmosphere. Existing land models unrealistically assume stomata can jump between steady states when the environment changes. We implemented dynamic modeling to predict gradual stomatal responses at different scales. Results suggested that considering this effect on plant behavior patterns in diurnal cycles was important. Our framework also simplified simulations and can contribute to further efficiency improvements.
Melanie A. Thurner, Silvia Caldararu, Jan Engel, Anja Rammig, and Sönke Zaehle
Biogeosciences, 21, 1391–1410, https://doi.org/10.5194/bg-21-1391-2024, https://doi.org/10.5194/bg-21-1391-2024, 2024
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Due to their crucial role in terrestrial ecosystems, we implemented mycorrhizal fungi into the QUINCY terrestrial biosphere model. Fungi interact with mineral and organic soil to support plant N uptake and, thus, plant growth. Our results suggest that the effect of mycorrhizal interactions on simulated ecosystem dynamics is minor under constant environmental conditions but necessary to reproduce and understand observed patterns under changing conditions, such as rising atmospheric CO2.
Jinyun Tang and William J. Riley
Biogeosciences, 21, 1061–1070, https://doi.org/10.5194/bg-21-1061-2024, https://doi.org/10.5194/bg-21-1061-2024, 2024
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A chemical kinetics theory is proposed to explain the non-monotonic relationship between temperature and biochemical rates. It incorporates the observed thermally reversible enzyme denaturation that is ensured by the ceaseless thermal motion of molecules and ions in an enzyme solution and three well-established theories: (1) law of mass action, (2) diffusion-limited chemical reaction theory, and (3) transition state theory.
Nina Raoult, Louis-Axel Edouard-Rambaut, Nicolas Vuichard, Vladislav Bastrikov, Anne Sofie Lansø, Bertrand Guenet, and Philippe Peylin
Biogeosciences, 21, 1017–1036, https://doi.org/10.5194/bg-21-1017-2024, https://doi.org/10.5194/bg-21-1017-2024, 2024
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Observations are used to reduce uncertainty in land surface models (LSMs) by optimising poorly constraining parameters. However, optimising against current conditions does not necessarily ensure that the parameters treated as invariant will be robust in a changing climate. Manipulation experiments offer us a unique chance to optimise our models under different (here atmospheric CO2) conditions. By using these data in optimisations, we gain confidence in the future projections of LSMs.
Kelsey T. Foster, Wu Sun, Yoichi P. Shiga, Jiafu Mao, and Anna M. Michalak
Biogeosciences, 21, 869–891, https://doi.org/10.5194/bg-21-869-2024, https://doi.org/10.5194/bg-21-869-2024, 2024
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Assessing agreement between bottom-up and top-down methods across spatial scales can provide insights into the relationship between ensemble spread (difference across models) and model accuracy (difference between model estimates and reality). We find that ensemble spread is unlikely to be a good indicator of actual uncertainty in the North American carbon balance. However, models that are consistent with atmospheric constraints show stronger agreement between top-down and bottom-up estimates.
Victoria R. Dutch, Nick Rutter, Leanne Wake, Oliver Sonnentag, Gabriel Hould Gosselin, Melody Sandells, Chris Derksen, Branden Walker, Gesa Meyer, Richard Essery, Richard Kelly, Phillip Marsh, Julia Boike, and Matteo Detto
Biogeosciences, 21, 825–841, https://doi.org/10.5194/bg-21-825-2024, https://doi.org/10.5194/bg-21-825-2024, 2024
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We undertake a sensitivity study of three different parameters on the simulation of net ecosystem exchange (NEE) during the snow-covered non-growing season at an Arctic tundra site. Simulations are compared to eddy covariance measurements, with near-zero NEE simulated despite observed CO2 release. We then consider how to parameterise the model better in Arctic tundra environments on both sub-seasonal timescales and cumulatively throughout the snow-covered non-growing season.
Bertrand Guenet, Jérémie Orliac, Lauric Cécillon, Olivier Torres, Laura Sereni, Philip A. Martin, Pierre Barré, and Laurent Bopp
Biogeosciences, 21, 657–669, https://doi.org/10.5194/bg-21-657-2024, https://doi.org/10.5194/bg-21-657-2024, 2024
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Heterotrophic respiration fluxes are a major flux between surfaces and the atmosphere, but Earth system models do not yet represent them correctly. Here we benchmarked Earth system models against observation-based products, and we identified the important mechanisms that need to be improved in the next-generation Earth system models.
Shuyue Li, Bonnie Waring, Jennifer Powers, and David Medvigy
Biogeosciences, 21, 455–471, https://doi.org/10.5194/bg-21-455-2024, https://doi.org/10.5194/bg-21-455-2024, 2024
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We used an ecosystem model to simulate primary production of a tropical forest subjected to 3 years of nutrient fertilization. Simulations parameterized such that relative allocation to fine roots increased with increasing soil phosphorus had leaf, wood, and fine root production consistent with observations. However, these simulations seemed to over-allocate to fine roots on multidecadal timescales, affecting aboveground biomass. Additional observations across timescales would benefit models.
Stephen Björn Wirth, Arne Poyda, Friedhelm Taube, Britta Tietjen, Christoph Müller, Kirsten Thonicke, Anja Linstädter, Kai Behn, Sibyll Schaphoff, Werner von Bloh, and Susanne Rolinski
Biogeosciences, 21, 381–410, https://doi.org/10.5194/bg-21-381-2024, https://doi.org/10.5194/bg-21-381-2024, 2024
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In dynamic global vegetation models (DGVMs), the role of functional diversity in forage supply and soil organic carbon storage of grasslands is not explicitly taken into account. We introduced functional diversity into the Lund Potsdam Jena managed Land (LPJmL) DGVM using CSR theory. The new model reproduced well-known trade-offs between plant traits and can be used to quantify the role of functional diversity in climate change mitigation using different functional diversity scenarios.
Joe R. McNorton and Francesca Di Giuseppe
Biogeosciences, 21, 279–300, https://doi.org/10.5194/bg-21-279-2024, https://doi.org/10.5194/bg-21-279-2024, 2024
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Wildfires have wide-ranging consequences for local communities, air quality and ecosystems. Vegetation amount and moisture state are key components to forecast wildfires. We developed a combined model and satellite framework to characterise vegetation, including the type of fuel, whether it is alive or dead, and its moisture content. The daily data is at high resolution globally (~9 km). Our characteristics correlate with active fire data and can inform fire danger and spread modelling efforts.
Brooke A. Eastman, William R. Wieder, Melannie D. Hartman, Edward R. Brzostek, and William T. Peterjohn
Biogeosciences, 21, 201–221, https://doi.org/10.5194/bg-21-201-2024, https://doi.org/10.5194/bg-21-201-2024, 2024
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We compared soil model performance to data from a long-term nitrogen addition experiment in a forested ecosystem. We found that in order for soil carbon models to accurately predict future forest carbon sequestration, two key processes must respond dynamically to nitrogen availability: (1) plant allocation of carbon to wood versus roots and (2) rates of soil organic matter decomposition. Long-term experiments can help improve our predictions of the land carbon sink and its climate impact.
Jan De Pue, Sebastian Wieneke, Ana Bastos, José Miguel Barrios, Liyang Liu, Philippe Ciais, Alirio Arboleda, Rafiq Hamdi, Maral Maleki, Fabienne Maignan, Françoise Gellens-Meulenberghs, Ivan Janssens, and Manuela Balzarolo
Biogeosciences, 20, 4795–4818, https://doi.org/10.5194/bg-20-4795-2023, https://doi.org/10.5194/bg-20-4795-2023, 2023
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The gross primary production (GPP) of the terrestrial biosphere is a key source of variability in the global carbon cycle. To estimate this flux, models can rely on remote sensing data (RS-driven), meteorological data (meteo-driven) or a combination of both (hybrid). An intercomparison of 11 models demonstrated that RS-driven models lack the sensitivity to short-term anomalies. Conversely, the simulation of soil moisture dynamics and stress response remains a challenge in meteo-driven models.
Chad A. Burton, Luigi J. Renzullo, Sami W. Rifai, and Albert I. J. M. Van Dijk
Biogeosciences, 20, 4109–4134, https://doi.org/10.5194/bg-20-4109-2023, https://doi.org/10.5194/bg-20-4109-2023, 2023
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Australia's land-based ecosystems play a critical role in controlling the variability in the global land carbon sink. However, uncertainties in the methods used for quantifying carbon fluxes limit our understanding. We develop high-resolution estimates of Australia's land carbon fluxes using machine learning methods and find that Australia is, on average, a stronger carbon sink than previously thought and that the seasonal dynamics of the fluxes differ from those described by other methods.
Yuan Yan, Anne Klosterhalfen, Fernando Moyano, Matthias Cuntz, Andrew C. Manning, and Alexander Knohl
Biogeosciences, 20, 4087–4107, https://doi.org/10.5194/bg-20-4087-2023, https://doi.org/10.5194/bg-20-4087-2023, 2023
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A better understanding of O2 fluxes, their exchange ratios with CO2 and their interrelations with environmental conditions would provide further insights into biogeochemical ecosystem processes. We, therefore, used the multilayer canopy model CANVEG to simulate and analyze the flux exchange for our forest study site for 2012–2016. Based on these simulations, we further successfully tested the application of various micrometeorological methods and the prospects of real O2 flux measurements.
Jie Zhang, Elisabeth Larsen Kolstad, Wenxin Zhang, Iris Vogeler, and Søren O. Petersen
Biogeosciences, 20, 3895–3917, https://doi.org/10.5194/bg-20-3895-2023, https://doi.org/10.5194/bg-20-3895-2023, 2023
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Manure application to agricultural land often results in large and variable N2O emissions. We propose a model with a parsimonious structure to investigate N transformations around such N2O hotspots. The model allows for new detailed insights into the interactions between transport and microbial activities regarding N2O emissions in heterogeneous soil environments. It highlights the importance of solute diffusion to N2O emissions from such hotspots which are often ignored by process-based models.
Jukka Alm, Antti Wall, Jukka-Pekka Myllykangas, Paavo Ojanen, Juha Heikkinen, Helena M. Henttonen, Raija Laiho, Kari Minkkinen, Tarja Tuomainen, and Juha Mikola
Biogeosciences, 20, 3827–3855, https://doi.org/10.5194/bg-20-3827-2023, https://doi.org/10.5194/bg-20-3827-2023, 2023
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In Finland peatlands cover one-third of land area. For half of those, with 4.3 Mha being drained for forestry, Finland reports sinks and sources of greenhouse gases in forest lands on organic soils following its UNFCCC commitment. We describe a new method for compiling soil CO2 balance that follows changes in tree volume, tree harvests and temperature. An increasing trend of emissions from 1.4 to 7.9 Mt CO2 was calculated for drained peatland forest soils in Finland for 1990–2021.
Siqi Li, Bo Zhu, Xunhua Zheng, Pengcheng Hu, Shenghui Han, Jihui Fan, Tao Wang, Rui Wang, Kai Wang, Zhisheng Yao, Chunyan Liu, Wei Zhang, and Yong Li
Biogeosciences, 20, 3555–3572, https://doi.org/10.5194/bg-20-3555-2023, https://doi.org/10.5194/bg-20-3555-2023, 2023
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Physical soil erosion and particulate carbon, nitrogen and phosphorus loss modules were incorporated into the process-oriented hydro-biogeochemical model CNMM-DNDC to realize the accurate simulation of water-induced erosion and subsequent particulate nutrient losses at high spatiotemporal resolution.
Ivan Cornut, Nicolas Delpierre, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, Otavio Campoe, Jose Luiz Stape, Vitoria Fernanda Santos, and Guerric le Maire
Biogeosciences, 20, 3093–3117, https://doi.org/10.5194/bg-20-3093-2023, https://doi.org/10.5194/bg-20-3093-2023, 2023
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Potassium is an essential element for living organisms. Trees are dependent upon this element for certain functions that allow them to build their trunks using carbon dioxide. Using data from experiments in eucalypt plantations in Brazil and a simplified computer model of the plantations, we were able to investigate the effect that a lack of potassium can have on the production of wood. Understanding nutrient cycles is useful to understand the response of forests to environmental change.
Ivan Cornut, Guerric le Maire, Jean-Paul Laclau, Joannès Guillemot, Yann Nouvellon, and Nicolas Delpierre
Biogeosciences, 20, 3119–3135, https://doi.org/10.5194/bg-20-3119-2023, https://doi.org/10.5194/bg-20-3119-2023, 2023
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After simulating the effects of low levels of potassium on the canopy of trees and the uptake of carbon dioxide from the atmosphere by leaves in Part 1, here we tried to simulate the way the trees use the carbon they have acquired and the interaction with the potassium cycle in the tree. We show that the effect of low potassium on the efficiency of the trees in acquiring carbon is enough to explain why they produce less wood when they are in soils with low levels of potassium.
Xiaojuan Yang, Peter Thornton, Daniel Ricciuto, Yilong Wang, and Forrest Hoffman
Biogeosciences, 20, 2813–2836, https://doi.org/10.5194/bg-20-2813-2023, https://doi.org/10.5194/bg-20-2813-2023, 2023
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We evaluated the performance of a land surface model (ELMv1-CNP) that includes both nitrogen (N) and phosphorus (P) limitation on carbon cycle processes. We show that ELMv1-CNP produces realistic estimates of present-day carbon pools and fluxes. We show that global C sources and sinks are significantly affected by P limitation. Our study suggests that introduction of P limitation in land surface models is likely to have substantial consequences for projections of future carbon uptake.
Kevin R. Wilcox, Scott L. Collins, Alan K. Knapp, William Pockman, Zheng Shi, Melinda D. Smith, and Yiqi Luo
Biogeosciences, 20, 2707–2725, https://doi.org/10.5194/bg-20-2707-2023, https://doi.org/10.5194/bg-20-2707-2023, 2023
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The capacity for carbon storage (C capacity) is an attribute that determines how ecosystems store carbon in the future. Here, we employ novel data–model integration techniques to identify the carbon capacity of six grassland sites spanning the US Great Plains. Hot and dry sites had low C capacity due to less plant growth and high turnover of soil C, so they may be a C source in the future. Alternately, cooler and wetter ecosystems had high C capacity, so these systems may be a future C sink.
Ara Cho, Linda M. J. Kooijmans, Kukka-Maaria Kohonen, Richard Wehr, and Maarten C. Krol
Biogeosciences, 20, 2573–2594, https://doi.org/10.5194/bg-20-2573-2023, https://doi.org/10.5194/bg-20-2573-2023, 2023
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Carbonyl sulfide (COS) is a useful constraint for estimating photosynthesis. To simulate COS leaf flux better in the SiB4 model, we propose a novel temperature function for enzyme carbonic anhydrase (CA) activity and optimize conductances using observations. The optimal activity of CA occurs below 40 °C, and Ball–Woodrow–Berry parameters are slightly changed. These reduce/increase uptakes in the tropics/higher latitudes and contribute to resolving discrepancies in the COS global budget.
Yunyao Ma, Bettina Weber, Alexandra Kratz, José Raggio, Claudia Colesie, Maik Veste, Maaike Y. Bader, and Philipp Porada
Biogeosciences, 20, 2553–2572, https://doi.org/10.5194/bg-20-2553-2023, https://doi.org/10.5194/bg-20-2553-2023, 2023
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We found that the modelled annual carbon balance of biocrusts is strongly affected by both the environment (mostly air temperature and CO2 concentration) and physiology, such as temperature response of respiration. However, the relative impacts of these drivers vary across regions with different climates. Uncertainty in driving factors may lead to unrealistic carbon balance estimates, particularly in temperate climates, and may be explained by seasonal variation of physiology due to acclimation.
Alexander J. Norton, A. Anthony Bloom, Nicholas C. Parazoo, Paul A. Levine, Shuang Ma, Renato K. Braghiere, and T. Luke Smallman
Biogeosciences, 20, 2455–2484, https://doi.org/10.5194/bg-20-2455-2023, https://doi.org/10.5194/bg-20-2455-2023, 2023
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This study explores how the representation of leaf phenology affects our ability to predict changes to the carbon balance of land ecosystems. We calibrate a new leaf phenology model against a diverse range of observations at six forest sites, showing that it improves the predictive capability of the processes underlying the ecosystem carbon balance. We then show how changes in temperature and rainfall affect the ecosystem carbon balance with this new model.
Libo Wang, Vivek K. Arora, Paul Bartlett, Ed Chan, and Salvatore R. Curasi
Biogeosciences, 20, 2265–2282, https://doi.org/10.5194/bg-20-2265-2023, https://doi.org/10.5194/bg-20-2265-2023, 2023
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Plant functional types (PFTs) are groups of plant species used to represent vegetation distribution in land surface models. There are large uncertainties associated with existing methods for mapping land cover datasets to PFTs. This study demonstrates how fine-resolution tree cover fraction and land cover datasets can be used to inform the PFT mapping process and reduce the uncertainties. The proposed largely objective method makes it easier to implement new land cover products in models.
Jennifer A. Holm, David M. Medvigy, Benjamin Smith, Jeffrey S. Dukes, Claus Beier, Mikhail Mishurov, Xiangtao Xu, Jeremy W. Lichstein, Craig D. Allen, Klaus S. Larsen, Yiqi Luo, Cari Ficken, William T. Pockman, William R. L. Anderegg, and Anja Rammig
Biogeosciences, 20, 2117–2142, https://doi.org/10.5194/bg-20-2117-2023, https://doi.org/10.5194/bg-20-2117-2023, 2023
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Unprecedented climate extremes (UCEs) are expected to have dramatic impacts on ecosystems. We present a road map of how dynamic vegetation models can explore extreme drought and climate change and assess ecological processes to measure and reduce model uncertainties. The models predict strong nonlinear responses to UCEs. Due to different model representations, the models differ in magnitude and trajectory of forest loss. Therefore, we explore specific plant responses that reflect knowledge gaps.
Veronika Kronnäs, Klas Lucander, Giuliana Zanchi, Nadja Stadlinger, Salim Belyazid, and Cecilia Akselsson
Biogeosciences, 20, 1879–1899, https://doi.org/10.5194/bg-20-1879-2023, https://doi.org/10.5194/bg-20-1879-2023, 2023
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In a future climate, extreme droughts might become more common. Climate change and droughts can have negative effects on soil weathering and plant health.
In this study, climate change effects on weathering were studied on sites in Sweden using the model ForSAFE, a climate change scenario and an extreme drought scenario. The modelling shows that weathering is higher during summer and increases with global warming but that weathering during drought summers can become as low as winter weathering.
Agustín Sarquis and Carlos A. Sierra
Biogeosciences, 20, 1759–1771, https://doi.org/10.5194/bg-20-1759-2023, https://doi.org/10.5194/bg-20-1759-2023, 2023
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Although plant litter is chemically and physically heterogenous and undergoes multiple transformations, models that represent litter dynamics often ignore this complexity. We used a multi-model inference framework to include information content in litter decomposition datasets and studied the time it takes for litter to decompose as measured by the transit time. In arid lands, the median transit time of litter is about 3 years and has a negative correlation with mean annual temperature.
Qi Guan, Jing Tang, Lian Feng, Stefan Olin, and Guy Schurgers
Biogeosciences, 20, 1635–1648, https://doi.org/10.5194/bg-20-1635-2023, https://doi.org/10.5194/bg-20-1635-2023, 2023
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Understanding terrestrial sources of nitrogen is vital to examine lake eutrophication changes. Combining process-based ecosystem modeling and satellite observations, we found that land-leached nitrogen in the Yangtze Plain significantly increased from 1979 to 2018, and terrestrial nutrient sources were positively correlated with eutrophication trends observed in most lakes, demonstrating the necessity of sustainable nitrogen management to control eutrophication.
Vivek K. Arora, Christian Seiler, Libo Wang, and Sian Kou-Giesbrecht
Biogeosciences, 20, 1313–1355, https://doi.org/10.5194/bg-20-1313-2023, https://doi.org/10.5194/bg-20-1313-2023, 2023
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The behaviour of natural systems is now very often represented through mathematical models. These models represent our understanding of how nature works. Of course, nature does not care about our understanding. Since our understanding is not perfect, evaluating models is challenging, and there are uncertainties. This paper illustrates this uncertainty for land models and argues that evaluating models in light of the uncertainty in various components provides useful information.
Cited articles
Arp, W. J.: Effects of source sink relations on photosynthetic acclimation
to elevated carbon dioxide, Plant Cell Environ., 14, 869–876, 1991.
Bloom, A. A., Exbrayat, J.-F., van der Velde, I. R., Feng, L., and Williams,
M.: The decadal state of the terrestrial carbon cycle: Global retrievals of
terrestrial carbon allocation, pools, and residence times, P. Natl. Acad. Sci. USA, 113, 1285–1290, https://doi.org/10.1073/pnas.1515160113,
2016.
BoM: Climate Data Online (Station 067105), Bureau of Meteorology Melbourne,
available at: http://www.bom.gov.au/climate/data/, last access: 26 August 2017.
Bossel, H.: treedyn3 forest simulation model, Ecol. Model., 90, 187–227,
https://doi.org/10.1016/0304-3800(95)00139-5, 1996.
Bradford, K. J. and Hsiao, T. C.: Stomatal behavior and water relations of
waterlogged tomato plants, Plant Physiol., 70, 1508–1513, 1982.
Buckley, T. N.: The control of stomata by water balance, New Phytol.,
168, 275–292, https://doi.org/10.1111/j.1469-8137.2005.01543.x, 2005.
Campany, C. E., Medlyn, B. E., and Duursma, R. A.: Reduced growth due to
belowground sink limitation is not fully explained by reduced
photosynthesis, Tree Physiol., 37, 1042–1054, https://doi.org/10.1093/treephys/tpx038, 2017.
Crous, K. Y. and Ellsworth, D. S.: Canopy position affects photosynthetic
adjustments to long-term elevated CO2 concentration (FACE) in aging needles
in a mature Pinus taeda forest, Tree Physiol., 24, 961–970, 2004.
De Kauwe, M. G., Medlyn, B. E., Zaehle, S., Walker, A. P., Dietze, M. C.,
Wang, Y. P., Luo, Y. Q., Jain, A. K., El-Masri, B., Hickler, T., Warlind,
D., Weng, E. S., Parton, W. J., Thornton, P. E., Wang, S. S., Prentice, I.
C., Asao, S., Smith, B., McCarthy, H. R., Iversen, C. M., Hanson, P. J.,
Warren, J. M., Oren, R., and Norby, R. J.: Where does the carbon go? A
model-data intercomparison of vegetation carbon allocation and turnover
processes at two temperate forest free-air CO2 enrichment sites, New
Phytol., 203, 883–899, https://doi.org/10.1111/nph.12847, 2014.
de Wit, C. T.: Simulation of assimilation, respiration, and transpiration of
crops, Wiley, Pudoc, Wageningen, 140 p., 1978.
de Wit, C. T. and van Keulen, H.: Modelling production of field crops and
its requirements, Geoderma, 40, 253–265,
https://doi.org/10.1016/0016-7061(87)90036-X, 1987.
Drake, J. E., Vårhammar, A., Kumarathunge, D., Medlyn, B. E., Pfautsch,
S., Reich, P. B., Tissue, D. T., Ghannoum, O., and Tjoelker, M. G.: A common
thermal niche among geographically diverse populations of the widely
distributed tree species Eucalyptus tereticornis: No evidence for adaptation
to climate-of-origin, Glob. Change Biol., 23, 5069–5082,
https://doi.org/10.1111/gcb.13771, 2017.
Duan, H., Amthor, J. S., Duursma, R. A., O'Grady, A. P., Choat, B., and
Tissue, D. T.: Carbon dynamics of eucalypt seedlings exposed to progressive
drought in elevated [CO2] and elevated temperature, Tree Physiol., 33,
779–792, https://doi.org/10.1093/treephys/tpt061, 2013.
Duursma, R. A.: Plantecophys – An R Package for Analysing and Modelling Leaf
Gas Exchange Data, Plos One, 10, e0143346, https://doi.org/10.1371/journal.pone.0143346,
2015.
Duursma, R. and Cieslak, M.: YplantQMC: plant architectural analysis with Yplant and QuasiMC,
available at: https://www.bitbucket.org/remkoduursma/yplantqmc/ (last access: 18 June 2018), 2014.
Farquhar, G. D., Von Caemmerer, S., and Berry, J. A.: A biochemical model of
photosynthetic carbon dioxide assimilation in leaves of 3-carbon pathway
species, Planta, 149, 78–90, 1980.
Fatichi, S., Leuzinger, S., and Körner, C.: Moving beyond
photosynthesis: from carbon source to sink-driven vegetation modeling, New
Phytol., 201, 1086–1095, https://doi.org/10.1111/nph.12614, 2014.
Fatichi, S., Pappas, C., and Ivanov, V. Y.: Modeling plant–water
interactions: an ecohydrological overview from the cell to the global scale,
WIRes Water, 3, 327–368, https://doi.org/10.1002/wat2.1125,
2016.
Friend, A. D., Lucht, W., Rademacher, T. T., Keribin, R., Betts, R., Cadule,
P., Ciais, P., Clark, D. B., Dankers, R., Falloon, P. D., Ito, A., Kahana,
R., Kleidon, A., Lomas, M. R., Nishina, K., Ostberg, S., Pavlick, R.,
Peylin, P., Schaphoff, S., Vuichard, N., Warszawski, L., Wiltshire, A., and
Woodward, F. I.: Carbon residence time dominates uncertainty in terrestrial
vegetation responses to future climate and atmospheric CO2, P. Natl. Acad. Sci. USA, 111, 3280–3285, https://doi.org/10.1073/pnas.1222477110,
2014.
Gunderson, C. A. and Wullschleger, S. D.: Photosynthetic acclimation in
trees to rising atmospheric CO2: a broader perspective, Photosynth.
Res., 39, 369–388, 1994.
Hamilton, E. W., Frank, D. A., Hinchey, P. M., and Murray, T. R.:
Defoliation induces root exudation and triggers positive rhizospheric
feedbacks in a temperate grassland, Soil Biology and Biochemistry, 40,
2865–2873, https://doi.org/10.1016/j.soilbio.2008.08.007, 2008.
Hartmann, H. and Trumbore, S.: Understanding the roles of nonstructural
carbohydrates in forest trees – from what we can measure to what we want to
know, New Phytol., 211, 386–403, https://doi.org/10.1111/nph.13955, 2016.
Hartmann, H., McDowell, N. G., and Trumbore, S.: Allocation to carbon
storage pools in Norway spruce saplings under drought and low CO2, Tree
Physiol., 35, 243–252, https://doi.org/10.1093/treephys/tpv019, 2015.
Hartmann, H., Adams, H. D., Hammond, W. M., Hoch, G., Landhäusser, S.
M., Wiley, E., and Zaehle, S.: Identifying differences in carbohydrate
dynamics of seedlings and mature trees to improve carbon allocation in
models for trees and forests, Environ. Exp. Bot., 152, 7–18,
https://doi.org/10.1016/j.envexpbot.2018.03.011, 2018.
Hughes, I. G. and Hase, T. P. A.: Measurements and their Uncertainties A
Practical Guide to
Modern Error Analysis, Oxford University Press, Oxford, UK, 2010.
Jain, A. K. and Yang, X.: Modeling the effects of two different land cover
change data sets on the carbon stocks of plants and soils in concert with
CO2 and climate change, Global Biogeochem. Cy., 19, GB2015,
https://doi.org/10.1029/2004GB002349, 2005.
Karst, J., Gaster, J., Wiley, E., and Landhäusser, S. M.: Stress
differentially causes roots of tree seedlings to exude carbon, Tree
Physiol., 37, 154–164, https://doi.org/10.1093/treephys/tpw090, 2017.
Klein, T. and Hoch, G.: Tree carbon allocation dynamics determined using a
carbon mass balance approach, New Phytol., 205, 147–159,
https://doi.org/10.1111/nph.12993, 2015.
Knorr, W. and Kattge, J.: Inversion of terrestrial ecosystem model
parameter values against eddy covariance measurements by Monte Carlo
sampling, Glob. Change Biol., 11, 1333–1351, 2005.
Körner, M., Waser, B., Rehmann, R., and Reubi, J. C.: Early
over-expression of GRP receptors in prostatic carcinogenesis, The Prostate,
74, 217–224, https://doi.org/10.1002/pros.22743, 2014.
Law, R. M., Kowalczyk, E. A., and Wang, Y. P.: Using atmospheric CO2 data to
assess a simplified carbon-climate simulation for the 20th century, Tellus B, 58, 427–437, 2006.
Mahmud, K. and Medlyn, B.: R project to reproduce the figures and analyses presented
in the manuscript “Inferring the effects of sink strength on plant carbon balance from
experimental measurements” by Mahmud et al. (2018), figshare, Code, https://doi.org/10.6084/m9.figshare.6594344.v3, 2018.
Mahmud, K., Medlyn, B., Duursma, R., and Campany, C.: Raw data files associated with the manuscript “Inferring
the effects of sink strength on plant carbon balance from experimental measurements” by Mahmud et al. (2018), figshare,
Dataset, https://doi.org/10.6084/m9.figshare.5125087.v13, 2018.
Maina, G. G., Brown, J. S., and Gersani, M.: Intra-plant versus inter-plant
root competition in beans: avoidance, resource matching or tragedy of the
commons, Plant Ecol., 160, 235–247, 2002.
Makela, A., Landsberg, J., Ek, A. R., Burk, T. E., Ter-Mikaelian, M., Agren,
G. I., Oliver, C. D., and Puttonen, P.: Process-based models for forest
ecosystem management: current state of the art and challenges for practical
implementation, Tree Physiol., 20, 289–298, 2000.
McConnaughay, K. D. M. and Bazzaz, F. A.: Is Physical Space a Soil
Resource?, Ecology, 72, 94–103, https://doi.org/10.2307/1938905, 1991.
McMurtrie, R. and Wolf, L.: A model of competition between trees and grass
for radiation, water and nutrients, Ann. Bot.-London, 52, 449–458,
1983.
Medlyn, B. E., Duursma, R. A., Eamus, D., Ellsworth, D. S., Prentice, I. C.,
Barton, C. V. M., Crous, K. Y., de Angelis, P., Freeman, M., and Wingate,
L.: Reconciling the optimal and empirical approaches to modelling stomatal
conductance, Glob. Change Biol., 17, 2134–2144,
https://doi.org/10.1111/j.1365-2486.2010.02375.x, 2011.
Metropolis, N., Rosenbluth, A. W., Rosenbluth, M. N., Teller, A. H., and
Teller, E.: Equation of State Calculations by Fast Computing Machines, J.
Chem. Phys., 21, 1087–1092, https://doi.org/10.1063/1.1699114, 1953.
Mitchell, R. J., Liu, Y., O'Brien, J. J., Elliott, K. J., Starr, G., Miniat,
C. F., and Hiers, J. K.: Future climate and fire interactions in the
southeastern region of the United States, Forest Ecol. Manag.,
327, 316–326, https://doi.org/10.1016/j.foreco.2013.12.003, 2014.
Müller, C., Cramer, W., Hare, W. L., and Lotze-Campen, H.: Climate
change risks for African agriculture, P. Natl. Acad.
Sci. USA, 108, 4313–4315, https://doi.org/10.1073/pnas.1015078108, 2011.
Nikinmaa, E., Sievänen, R., and Hölttä, T.: Dynamics of leaf gas
exchange, xylem and phloem transport, water potential and carbohydrate
concentration in a realistic 3-D model tree crown, Ann. Bot.-London, 114,
653–666, https://doi.org/10.1093/aob/mcu068, 2014.
Paul, M. J. and Foyer, C. H.: Sink regulation of photosynthesis, J. Exp. Bot.,
52, 1383–1400, 2001.
Pinnington, E. M., Casella, E., Dance, S. L., Lawless, A. S., Morison, J. I.
L., Nichols, N. K., Wilkinson, M., and Quaife, T. L.: Investigating the role
of prior and observation error correlations in improving a model forecast of
forest carbon balance using Four-dimensional Variational data assimilation,
Agr. Forest Meteorol., 228–229, 299–314,
https://doi.org/10.1016/j.agrformet.2016.07.006, 2016.
Poorter, H., Bühler, J., van Dusschoten, D., Climent, J., and Postma, J.
A.: Pot size matters: a meta-analysis of the effects of rooting volume on
plant growth, Funct. Plant Biol., 39, 839–850, https://doi.org/10.1071/fp12049, 2012a.
Poorter, H., Niklas, K. J., Reich, P. B., Oleksyn, J., Poot, P., and Mommer,
L.: Biomass allocation to leaves, stems and roots: meta-analyses of
interspecific variation and environmental control, New Phytol., 193,
30–50, https://doi.org/10.1111/j.1469-8137.2011.03952.x, 2012b.
Pugh, T. A. M., Müller, C., Arneth, A., Haverd, V., and Smith, B.: Key
knowledge and data gaps in modelling the influence of CO2 concentration on
the terrestrial carbon sink, J. Plant Physiol., 203, 3–15,
https://doi.org/10.1016/j.jplph.2016.05.001, 2016.
Quaife, T., Lewis, P., De Kauwe, M., Williams, M., Law, B. E., Disney, M.,
and Bowyer, P.: Assimilating canopy reflectance data into an ecosystem model
with an Ensemble Kalman Filter, Remote Sens. Environ., 112, 1347–1364,
https://doi.org/10.1016/j.rse.2007.05.020, 2008.
Reich, P. B.: Key canopy traits drive forest productivity, P.
Roy. Soc. B, 279, 2128–2134, https://doi.org/10.1098/rspb.2011.2270, 2012.
Richardson, A. D., Williams, M., Hollinger, D. Y., Moore, D. J. P., Dail, D.
B., Davidson, E. A., Scott, N. A., Evans, R. S., Hughes, H., Lee, J. T.,
Rodrigues, C., and Savage, K.: Estimating parameters of a forest ecosystem C
model with measurements of stocks and fluxes as joint constraints, Oecol.,
164, 25–40, https://doi.org/10.1007/s00442-010-1628-y, 2010.
Richardson, A. D., Carbone, M. S., Keenan, T. F., Czimczik, C. I.,
Hollinger, D. Y., Murakami, P., Schaberg, P. G., and Xu, X. M.: Seasonal
dynamics and age of stemwood nonstructural carbohydrates in temperate forest
trees, New Phytol., 197, 850–861, https://doi.org/10.1111/nph.12042, 2013.
Robbins, N. S. and Pharr, D. M.: Effect of Restricted Root Growth on
Carbohydrate Metabolism and Whole Plant Growth of Cucumis sativus L., Plant Physiol., 87, 409–413,
https://doi.org/10.1104/pp.87.2.409, 1988.
Rowland, L., Hill, T. C., Stahl, C., Siebicke, L., Burban, B.,
Zaragoza-Castells, J., Ponton, S., Bonal, D., Meir, P., and Williams, M.:
Evidence for strong seasonality in the carbon storage and carbon use
efficiency of an Amazonian forest, Glob. Change Biol., 20, 979–991,
https://doi.org/10.1111/gcb.12375, 2014.
Running, S. W. and Gower, S. T.: FOREST-BGC, A general model of forest
ecosystem processes for regional applications. II. Dynamic carbon allocation
and nitrogen budgets, Tree Physiol., 9, 147–160,
https://doi.org/10.1093/treephys/9.1-2.147, 1991.
Sage, R. F.: Acclimation of photosynthesis to increasing atmospheric
CO2: the gas-exchange perspective, Photosynth. Res., 39,
351–368, 1994.
Sala, A., Woodruff, D. R., and Meinzer, F. C.: Carbon dynamics in trees:
feast or famine?, Tree Physiol., 32, 764–775, https://doi.org/10.1093/treephys/tpr143, 2012.
Schiestl-Aalto, P., Kulmala, L., Mäkinen, H., Nikinmaa, E., and
Mäkelä, A.: CASSIA – a dynamic model for predicting intra-annual
sink demand and interannual growth variation in Scots pine, New Phytol.,
206, 647–659, https://doi.org/10.1111/nph.13275, 2015.
Schwarz, G.: Estimating the Dimension of a Model, Ann. Statist., 6, 461–464,
https://doi.org/10.1214/aos/1176344136, 1978.
Thornley, J. H. M. and Cannell, M. G. R.: Modelling the Components of Plant
Respiration: Representation and Realism, Ann. Bot.-London, 85, 55–67,
https://doi.org/10.1006/anbo.1999.0997, 2000.
Thornton, P. E., Lamarque, J.-F., Rosenbloom, N. A., and Mahowald, N. M.:
Influence of carbon-nitrogen cycle coupling on land model response to CO2
fertilization and climate variability, Global Biogeochem. Cy., 21,
GB4018, https://doi.org/10.1029/2006GB002868, 2007.
Van Oijen, M.: Bayesian Calibration (BC) and Bayesian Model Comparison (BMC)
of Process-Based Models: Theory, Implementation and Guidelines, NERC/Centre for Ecology & Hydrology, 16 p., 2008.
Villar, R. and Merino, J.: Comparison of leaf construction costs in woody
species with differing leaf life-spans in contrasting ecosystems, New
Phytol., 151, 213–226, https://doi.org/10.1046/j.1469-8137.2001.00147.x, 2001.
Wiley, E. and Helliker, B.: A re-evaluation of carbon storage in trees
lends greater support for carbon limitation to growth, New Phytol., 195,
285–289, https://doi.org/10.1111/j.1469-8137.2012.04180.x, 2012.
Williams, M., Schwarz, P. A., Law, B. E., Irvine, J., and Kurpius, M. R.: An
improved analysis of forest carbon dynamics using data assimilation, Glob.
Change Biol., 11, 89–105, 2005.
Zaehle, S. and Friend, A. D.: Carbon and nitrogen cycle dynamics in the
O-CN land surface model: 1. Model description, site-scale evaluation, and
sensitivity to parameter estimates, Global Biogeochem. Cy., 24,
GB1005, https://doi.org/10.1029/2009GB003521, 2010.
Zobitz, J. M., Desai, A. R., Moore, D. J. P., and Chadwick, M. A.: A primer
for data assimilation with ecological models using Markov Chain Monte Carlo
(MCMC), Oecol., 167, 599, https://doi.org/10.1007/s00442-011-2107-9, 2011.
Short summary
A major limitation of current terrestrial vegetation models is that we do not know how to model C balance processes under sink-limited conditions. To address this limitation, we applied data assimilation of a simple C balance model to a manipulative experiment in which sink limitation was induced with low rooting volume. Our analysis framework allowed us to infer that, in addition to a feedback on photosynthetic rates, the reduction in growth was effected by other C balance processes.
A major limitation of current terrestrial vegetation models is that we do not know how to model...
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