Articles | Volume 16, issue 22
Biogeosciences, 16, 4463–4484, 2019
https://doi.org/10.5194/bg-16-4463-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Biogeosciences, 16, 4463–4484, 2019
https://doi.org/10.5194/bg-16-4463-2019
© Author(s) 2019. This work is distributed under
the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
Research article 25 Nov 2019
Research article | 25 Nov 2019
The importance of physiological, structural and trait responses to drought stress in driving spatial and temporal variation in GPP across Amazon forests
Sophie Flack-Prain et al.
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Caroline A. Famiglietti, T. Luke Smallman, Paul A. Levine, Sophie Flack-Prain, Gregory R. Quetin, Victoria Meyer, Nicholas C. Parazoo, Stephanie G. Stettz, Yan Yang, Damien Bonal, A. Anthony Bloom, Mathew Williams, and Alexandra G. Konings
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-478, https://doi.org/10.5194/bg-2020-478, 2020
Preprint under review for BG
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Model uncertainty dominates the spread in terrestrial carbon cycle predictions. Efforts to reduce it typically involve adding processes, thereby increasing model complexity. However, if and how model performance scales with complexity is unclear. Using a suite of 16 structurally distinct carbon cycle models, we find that increased complexity only improves skill if parameters are adequately informed. Otherwise, it can degrade skill and an intermediate complexity model is optimal.
Caroline A. Famiglietti, T. Luke Smallman, Paul A. Levine, Sophie Flack-Prain, Gregory R. Quetin, Victoria Meyer, Nicholas C. Parazoo, Stephanie G. Stettz, Yan Yang, Damien Bonal, A. Anthony Bloom, Mathew Williams, and Alexandra G. Konings
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-478, https://doi.org/10.5194/bg-2020-478, 2020
Preprint under review for BG
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Model uncertainty dominates the spread in terrestrial carbon cycle predictions. Efforts to reduce it typically involve adding processes, thereby increasing model complexity. However, if and how model performance scales with complexity is unclear. Using a suite of 16 structurally distinct carbon cycle models, we find that increased complexity only improves skill if parameters are adequately informed. Otherwise, it can degrade skill and an intermediate complexity model is optimal.
A. Anthony Bloom, Kevin W. Bowman, Junjie Liu, Alexandra G. Konings, John R. Worden, Nicholas C. Parazoo, Victoria Meyer, John T. Reager, Helen M. Worden, Zhe Jiang, Gregory R. Quetin, T. Luke Smallman, Jean-François Exbrayat, Yi Yin, Sassan S. Saatchi, Mathew Williams, and David S. Schimel
Biogeosciences, 17, 6393–6422, https://doi.org/10.5194/bg-17-6393-2020, https://doi.org/10.5194/bg-17-6393-2020, 2020
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We use a model of the 2001–2015 tropical land carbon cycle, with satellite measurements of land and atmospheric carbon, to disentangle lagged and concurrent effects (due to past and concurrent meteorological events, respectively) on annual land–atmosphere carbon exchanges. The variability of lagged effects explains most 2001–2015 inter-annual carbon flux variations. We conclude that concurrent and lagged effects need to be accurately resolved to better predict the world's land carbon sink.
Rafael Poyatos, Víctor Granda, Víctor Flo, Mark A. Adams, Balázs Adorján, David Aguadé, Marcos P.M. Aidar, Scott Allen, M. Susana Alvarado-Barrientos, Kristina J. Anderson-Teixeira, Luiza Maria Aparecido, M. Altaf Arain, Ismael Aranda, Heidi Asbjornsen, Robert Baxter, Eric Beamesderfer, Z. Carter Berry, Daniel Berveiller, Bethany Blakely, Johnny Boggs, Gil Bohrer, Paul V. Bolstad, Damien Bonal, Rosvel Bracho, Patricia Brito, Jason Brodeur, Fernando Casanoves, Jérôme Chave, Hui Chen, Cesar Cisneros, Kenneth Clark, Edoardo Cremonese, Jorge S. David, Teresa S. David, Nicolas Delpierre, Ankur R. Desai, Frederic C. Do, Michal Dohnal, Jean-Christophe Domec, Sebinasi Dzikiti, Colin Edgar, Rebekka Eichstaedt, Tarek S. El-Madany, Jan Elbers, Cleiton B. Eller, Eugénie S. Euskirchen, Brent Ewers, Patrick Fonti, Alicia Forner, David I. Forrester, Helber C. Freitas, Marta Galvagno, Omar Garcia-Tejera, Chandra Prasad Ghimire, Teresa E. Gimeno, John Grace, André Granier, Anne Griebel, Yan Guangyu, Mark B. Gush, Paul Hanson, Niles J. Hasselquist, Ingo Heinrich, Virginia Hernandez-Santana, Valentine Herrmann, Teemu Hölttä, Friso Holwerda, Dang Hongzhong, James Irvine, Supat Isarangkool Na Ayutthaya, Paul G. Jarvis, Hubert Jochheim, Carlos A. Joly, Julia Kaplick, Hyun Seok Kim, Leif Klemedtsson, Heather Kropp, Fredrik Lagergren, Patrick Lane, Petra Lang, Andrei Lapenas, Víctor Lechuga, Minsu Lee, Christoph Leuschner, Jean-Marc Limousin, Juan Carlos Linares, Maj-Lena Linderson, Andres Lindroth, Pilar Llorens, Álvaro López-Bernal, Michael M. Loranty, Dietmar Lüttschwager, Cate Macinnis-Ng, Isabelle Maréchaux, Timothy A. Martin, Ashley Matheny, Nate McDowell, Sean McMahon, Patrick Meir, Ilona Mészáros, Mirco Migliavacca, Patrick Mitchell, Meelis Mölder, Leonardo Montagnani, Georgianne W. Moore, Ryogo Nakada, Furong Niu, Rachael H. Nolan, Richard Norby, Kimberly Novick, Walter Oberhuber, Nikolaus Obojes, Christopher A. Oishi, Rafael S. Oliveira, Ram Oren, Jean-Marc Ourcival, Teemu Paljakka, Oscar Perez-Priego, Pablo L. Peri, Richard L. Peters, Sebastian Pfautsch, William T. Pockman, Yakir Preisler, Katherine Rascher, George Robinson, Humberto Rocha, Alain Rocheteau, Alexander Röll, Bruno Rosado, Lucy Rowland, Alexey V. Rubtsov, Santiago Sabaté, Yann Salmon, Roberto L. Salomón, Elisenda Sánchez-Costa, Karina V. R. Schäfer, Bernhard Schuldt, Alexandr Shashkin, Clément Stahl, Marko Stojanović, Juan Carlos Suárez, Ge Sun, Justyna Szatniewska, Fyodor Tatarinov, Miroslav Tesař, Frank M. Thomas, Pantana Tor-ngern, Josef Urban, Fernando Valladares, Christiaan van der Tol, Ilja van Meerveld, Andrej Varlagin, Holm Voigt, Jeffrey Warren, Christiane Werner, Willy Werner, Gerhard Wieser, Lisa Wingate, Stan Wullschleger, Koong Yi, Roman Zweifel, Kathy Steppe, Maurizio Mencuccini, and Jordi Martínez-Vilalta
Earth Syst. Sci. Data Discuss., https://doi.org/10.5194/essd-2020-227, https://doi.org/10.5194/essd-2020-227, 2020
Preprint under review for ESSD
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Transpiration is a key component of global water balance but it is poorly constrained from available observations. We present SAPFLUXNET, the first global database of tree-level transpiration from sap flow measurements, containing 202 datasets and covering a wide range of ecological conditions. SAPFLUXNET and its accompanying R software package
sapfluxnetrwill facilitate new data syntheses on the ecological factors driving water use and drought responses of trees and forests.
Thomas Luke Smallman and Mathew Williams
Geosci. Model Dev., 12, 2227–2253, https://doi.org/10.5194/gmd-12-2227-2019, https://doi.org/10.5194/gmd-12-2227-2019, 2019
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Photosynthesis and evapotranspiration are processes with global significance for climate, carbon and water cycling. Process-orientated simulation of these processes and their interactions have till now come at high computational cost. Here we present a new coupled model of intermediate complexity operating at orders of magnitude greater speed. Independent evaluation at FLUXNET sites for a single, global parameterization shows good agreement, with a typical R2 value of ~ 0.60.
Efrén López-Blanco, Jean-François Exbrayat, Magnus Lund, Torben R. Christensen, Mikkel P. Tamstorf, Darren Slevin, Gustaf Hugelius, Anthony A. Bloom, and Mathew Williams
Earth Syst. Dynam., 10, 233–255, https://doi.org/10.5194/esd-10-233-2019, https://doi.org/10.5194/esd-10-233-2019, 2019
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The terrestrial CO2 exchange in Arctic ecosystems plays an important role in the global carbon cycle and is particularly sensitive to the ongoing warming experienced in recent years. To improve our understanding of the atmosphere–biosphere interplay, we evaluated the state of the terrestrial pan-Arctic carbon cycling using a promising data assimilation system in the first 15 years of the 21st century. This is crucial when it comes to making predictions about the future state of the carbon cycle.
Vasileios Myrgiotis, Mathew Williams, Robert M. Rees, and Cairistiona F. E. Topp
Biogeosciences, 16, 1641–1655, https://doi.org/10.5194/bg-16-1641-2019, https://doi.org/10.5194/bg-16-1641-2019, 2019
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This study focuses on a northwestern European cropland region and shows that the type of crop growing on a soil has notable effects on the emission of nitrous oxide (N2O – a greenhouse gas) from that soil. It was found that N2O emissions from soils under oilseed cultivation are significantly higher than soils under cereal cultivation. This variation is mostly explained by the fact that oilseeds require more nitrogen (fertiliser) than cereals, especially at early crop growth stages.
Anne Sofie Lansø, Thomas Luke Smallman, Jesper Heile Christensen, Mathew Williams, Kim Pilegaard, Lise-Lotte Sørensen, and Camilla Geels
Biogeosciences, 16, 1505–1524, https://doi.org/10.5194/bg-16-1505-2019, https://doi.org/10.5194/bg-16-1505-2019, 2019
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Although coastal regions only amount to 7 % of the global oceans, their contribution to the global oceanic surface exchange of CO2 is much greater. In this study, we gain detailed insight into how these coastal marine fluxes compare to CO2 exchange from coastal land regions. Annually, the coastal marine exchanges are smaller than the total uptake of CO2 from the land surfaces within the study area but comparable in size to terrestrial fluxes from individual land cover classes of the region.
Emily D. White, Matthew Rigby, Mark F. Lunt, T. Luke Smallman, Edward Comyn-Platt, Alistair J. Manning, Anita L. Ganesan, Simon O'Doherty, Ann R. Stavert, Kieran Stanley, Mathew Williams, Peter Levy, Michel Ramonet, Grant L. Forster, Andrew C. Manning, and Paul I. Palmer
Atmos. Chem. Phys., 19, 4345–4365, https://doi.org/10.5194/acp-19-4345-2019, https://doi.org/10.5194/acp-19-4345-2019, 2019
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Understanding carbon dioxide (CO2) fluxes from the terrestrial biosphere on a national scale is important for evaluating land use strategies to mitigate climate change. We estimate emissions of CO2 from the UK biosphere using atmospheric data in a top-down approach. Our findings show that bottom-up estimates from models of biospheric fluxes overestimate the amount of CO2 uptake in summer. This suggests these models wrongly estimate or omit key processes, e.g. land disturbance due to harvest.
Tommaso Jucker, Gregory P. Asner, Michele Dalponte, Philip G. Brodrick, Christopher D. Philipson, Nicholas R. Vaughn, Yit Arn Teh, Craig Brelsford, David F. R. P. Burslem, Nicolas J. Deere, Robert M. Ewers, Jakub Kvasnica, Simon L. Lewis, Yadvinder Malhi, Sol Milne, Reuben Nilus, Marion Pfeifer, Oliver L. Phillips, Lan Qie, Nathan Renneboog, Glen Reynolds, Terhi Riutta, Matthew J. Struebig, Martin Svátek, Edgar C. Turner, and David A. Coomes
Biogeosciences, 15, 3811–3830, https://doi.org/10.5194/bg-15-3811-2018, https://doi.org/10.5194/bg-15-3811-2018, 2018
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Efforts to protect tropical forests hinge on recognizing the ecosystem services they provide, including their ability to store carbon. Airborne laser scanning (ALS) captures information on the 3-D structure of forests, allowing carbon stocks to be mapped. By combining ALS with data from 173 field plots on the island of Borneo, we develop a simple yet general model for estimating forest carbon stocks from the air. Our model underpins ongoing efforts to restore Borneo's unique tropical forests.
Jean-François Exbrayat, A. Anthony Bloom, Pete Falloon, Akihiko Ito, T. Luke Smallman, and Mathew Williams
Earth Syst. Dynam., 9, 153–165, https://doi.org/10.5194/esd-9-153-2018, https://doi.org/10.5194/esd-9-153-2018, 2018
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We use global observations of current terrestrial net primary productivity (NPP) to constrain the uncertainty in large ensemble 21st century projections of NPP under a "business as usual" scenario using a skill-based multi-model averaging technique. Our results show that this procedure helps greatly reduce the uncertainty in global projections of NPP. We also identify regions where uncertainties in models and observations remain too large to confidently conclude a sign of the change of NPP.
Rhys Whitley, Jason Beringer, Lindsay B. Hutley, Gabriel Abramowitz, Martin G. De Kauwe, Bradley Evans, Vanessa Haverd, Longhui Li, Caitlin Moore, Youngryel Ryu, Simon Scheiter, Stanislaus J. Schymanski, Benjamin Smith, Ying-Ping Wang, Mathew Williams, and Qiang Yu
Biogeosciences, 14, 4711–4732, https://doi.org/10.5194/bg-14-4711-2017, https://doi.org/10.5194/bg-14-4711-2017, 2017
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This paper attempts to review some of the current challenges faced by the modelling community in simulating the behaviour of savanna ecosystems. We provide a particular focus on three dynamic processes (phenology, root-water access, and fire) that are characteristic of savannas, which we believe are not adequately represented in current-generation terrestrial biosphere models. We highlight reasons for these misrepresentations, possible solutions and a future direction for research in this area.
Efrén López-Blanco, Magnus Lund, Mathew Williams, Mikkel P. Tamstorf, Andreas Westergaard-Nielsen, Jean-François Exbrayat, Birger U. Hansen, and Torben R. Christensen
Biogeosciences, 14, 4467–4483, https://doi.org/10.5194/bg-14-4467-2017, https://doi.org/10.5194/bg-14-4467-2017, 2017
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An improvement in our process-based understanding of CO2 exchanges in the Arctic and their climate sensitivity is critical. With continued warming temperatures and longer growing seasons, tundra systems will likely increase rates of C cycling, although shifts in sink strength could take place, challenging the forecast of upcoming C states. In this context, we investigated the functional responses of C exchange to environmental characteristics across 8 consecutive years in West Greenland.
Darren Slevin, Simon F. B. Tett, Jean-François Exbrayat, A. Anthony Bloom, and Mathew Williams
Geosci. Model Dev., 10, 2651–2670, https://doi.org/10.5194/gmd-10-2651-2017, https://doi.org/10.5194/gmd-10-2651-2017, 2017
Sam P. Jones, Torsten Diem, Lidia P. Huaraca Quispe, Adan J. Cahuana, Dave S. Reay, Patrick Meir, and Yit Arn Teh
Biogeosciences, 13, 4151–4165, https://doi.org/10.5194/bg-13-4151-2016, https://doi.org/10.5194/bg-13-4151-2016, 2016
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Tropical montane forests represent a significant portion of Andean land cover, however, soil-atmosphere methane exchange in these ecosystems is under studied. Here we report on soil methane cycling in montane forests of the southern Peruvian Andes. These soils acted as a net sink for atmospheric methane and variation in uptake across the studied forests was best explained by nitrate inhibition of oxidation and/or limitations on the inward diffusion of methane from the atmosphere into the soil.
Rhys Whitley, Jason Beringer, Lindsay B. Hutley, Gab Abramowitz, Martin G. De Kauwe, Remko Duursma, Bradley Evans, Vanessa Haverd, Longhui Li, Youngryel Ryu, Benjamin Smith, Ying-Ping Wang, Mathew Williams, and Qiang Yu
Biogeosciences, 13, 3245–3265, https://doi.org/10.5194/bg-13-3245-2016, https://doi.org/10.5194/bg-13-3245-2016, 2016
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In this study we assess how well terrestrial biosphere models perform at predicting water and carbon cycling for savanna ecosystems. We apply our models to five savanna sites in Northern Australia and highlight key causes for model failure. Our assessment of model performance uses a novel benchmarking system that scores a model’s predictive ability based on how well it is utilizing its driving information. On average, we found the models as a group display only moderate levels of performance.
Fabien H. Wagner, Bruno Hérault, Damien Bonal, Clément Stahl, Liana O. Anderson, Timothy R. Baker, Gabriel Sebastian Becker, Hans Beeckman, Danilo Boanerges Souza, Paulo Cesar Botosso, David M. J. S. Bowman, Achim Bräuning, Benjamin Brede, Foster Irving Brown, Jesus Julio Camarero, Plínio Barbosa Camargo, Fernanda C. G. Cardoso, Fabrício Alvim Carvalho, Wendeson Castro, Rubens Koloski Chagas, Jérome Chave, Emmanuel N. Chidumayo, Deborah A. Clark, Flavia Regina Capellotto Costa, Camille Couralet, Paulo Henrique da Silva Mauricio, Helmut Dalitz, Vinicius Resende de Castro, Jaçanan Eloisa de Freitas Milani, Edilson Consuelo de Oliveira, Luciano de Souza Arruda, Jean-Louis Devineau, David M. Drew, Oliver Dünisch, Giselda Durigan, Elisha Elifuraha, Marcio Fedele, Ligia Ferreira Fedele, Afonso Figueiredo Filho, César Augusto Guimarães Finger, Augusto César Franco, João Lima Freitas Júnior, Franklin Galvão, Aster Gebrekirstos, Robert Gliniars, Paulo Maurício Lima de Alencastro Graça, Anthony D. Griffiths, James Grogan, Kaiyu Guan, Jürgen Homeier, Maria Raquel Kanieski, Lip Khoon Kho, Jennifer Koenig, Sintia Valerio Kohler, Julia Krepkowski, José Pires Lemos-Filho, Diana Lieberman, Milton Eugene Lieberman, Claudio Sergio Lisi, Tomaz Longhi Santos, José Luis López Ayala, Eduardo Eijji Maeda, Yadvinder Malhi, Vivian R. B. Maria, Marcia C. M. Marques, Renato Marques, Hector Maza Chamba, Lawrence Mbwambo, Karina Liana Lisboa Melgaço, Hooz Angela Mendivelso, Brett P. Murphy, Joseph J. O'Brien, Steven F. Oberbauer, Naoki Okada, Raphaël Pélissier, Lynda D. Prior, Fidel Alejandro Roig, Michael Ross, Davi Rodrigo Rossatto, Vivien Rossi, Lucy Rowland, Ervan Rutishauser, Hellen Santana, Mark Schulze, Diogo Selhorst, Williamar Rodrigues Silva, Marcos Silveira, Susanne Spannl, Michael D. Swaine, José Julio Toledo, Marcos Miranda Toledo, Marisol Toledo, Takeshi Toma, Mario Tomazello Filho, Juan Ignacio Valdez Hernández, Jan Verbesselt, Simone Aparecida Vieira, Grégoire Vincent, Carolina Volkmer de Castilho, Franziska Volland, Martin Worbes, Magda Lea Bolzan Zanon, and Luiz E. O. C. Aragão
Biogeosciences, 13, 2537–2562, https://doi.org/10.5194/bg-13-2537-2016, https://doi.org/10.5194/bg-13-2537-2016, 2016
K. E. Clark, A. J. West, R. G. Hilton, G. P. Asner, C. A. Quesada, M. R. Silman, S. S. Saatchi, W. Farfan-Rios, R. E. Martin, A. B. Horwath, K. Halladay, M. New, and Y. Malhi
Earth Surf. Dynam., 4, 47–70, https://doi.org/10.5194/esurf-4-47-2016, https://doi.org/10.5194/esurf-4-47-2016, 2016
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The key findings of this paper are that landslides in the eastern Andes of Peru in the Kosñipata Valley rapidly turn over the landscape in ~1320 years, with a rate of 0.076% yr-1. Additionally, landslides were concentrated at lower elevations, due to an intense storm in 2010 accounting for ~1/4 of the total landslide area over the 25-year remote sensing study. Valley-wide carbon stocks were determined, and we estimate that 26 tC km-2 yr-1 of soil and biomass are stripped by landslides.
C. Safta, D. M. Ricciuto, K. Sargsyan, B. Debusschere, H. N. Najm, M. Williams, and P. E. Thornton
Geosci. Model Dev., 8, 1899–1918, https://doi.org/10.5194/gmd-8-1899-2015, https://doi.org/10.5194/gmd-8-1899-2015, 2015
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In this paper we propose a probabilistic framework for an uncertainty quantification study of a carbon cycle model and focus on the comparison between steady-state and transient
simulation setups. We study model parameters via global sensitivity analysis and employ a Bayesian approach to calibrate these parameters using NEE observations at the Harvard Forest site. The calibration results are then used to assess the predictive skill of the model via posterior predictive checks.
L. Rowland, A. Harper, B. O. Christoffersen, D. R. Galbraith, H. M. A. Imbuzeiro, T. L. Powell, C. Doughty, N. M. Levine, Y. Malhi, S. R. Saleska, P. R. Moorcroft, P. Meir, and M. Williams
Geosci. Model Dev., 8, 1097–1110, https://doi.org/10.5194/gmd-8-1097-2015, https://doi.org/10.5194/gmd-8-1097-2015, 2015
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This study evaluates the capability of five vegetation models to simulate the response of forest productivity to changes in temperature and drought, using data collected from an Amazonian forest. This study concludes that model consistencies in the responses of net canopy carbon production to temperature and precipitation change were the result of inconsistently modelled leaf-scale process responses and substantial variation in modelled leaf area responses.
A. A. Bloom and M. Williams
Biogeosciences, 12, 1299–1315, https://doi.org/10.5194/bg-12-1299-2015, https://doi.org/10.5194/bg-12-1299-2015, 2015
D. Slevin, S. F. B. Tett, and M. Williams
Geosci. Model Dev., 8, 295–316, https://doi.org/10.5194/gmd-8-295-2015, https://doi.org/10.5194/gmd-8-295-2015, 2015
K. E. Clark, M. A. Torres, A. J. West, R. G. Hilton, M. New, A. B. Horwath, J. B. Fisher, J. M. Rapp, A. Robles Caceres, and Y. Malhi
Hydrol. Earth Syst. Sci., 18, 5377–5397, https://doi.org/10.5194/hess-18-5377-2014, https://doi.org/10.5194/hess-18-5377-2014, 2014
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This paper presents measurements of the balance of water inputs and outputs over 1 year for a river basin in the Andes of Peru. Our results show that the annual water budget is balanced within a few percent uncertainty; that is to say, the amount of water entering the basin was the same as the amount leaving, providing important information for understanding the water cycle. We also show that seasonal storage of water is important in sustaining the flow of water during the dry season.
M. Réjou-Méchain, H. C. Muller-Landau, M. Detto, S. C. Thomas, T. Le Toan, S. S. Saatchi, J. S. Barreto-Silva, N. A. Bourg, S. Bunyavejchewin, N. Butt, W. Y. Brockelman, M. Cao, D. Cárdenas, J.-M. Chiang, G. B. Chuyong, K. Clay, R. Condit, H. S. Dattaraja, S. J. Davies, A. Duque, S. Esufali, C. Ewango, R. H. S. Fernando, C. D. Fletcher, I. A. U. N. Gunatilleke, Z. Hao, K. E. Harms, T. B. Hart, B. Hérault, R. W. Howe, S. P. Hubbell, D. J. Johnson, D. Kenfack, A. J. Larson, L. Lin, Y. Lin, J. A. Lutz, J.-R. Makana, Y. Malhi, T. R. Marthews, R. W. McEwan, S. M. McMahon, W. J. McShea, R. Muscarella, A. Nathalang, N. S. M. Noor, C. J. Nytch, A. A. Oliveira, R. P. Phillips, N. Pongpattananurak, R. Punchi-Manage, R. Salim, J. Schurman, R. Sukumar, H. S. Suresh, U. Suwanvecho, D. W. Thomas, J. Thompson, M. Uríarte, R. Valencia, A. Vicentini, A. T. Wolf, S. Yap, Z. Yuan, C. E. Zartman, J. K. Zimmerman, and J. Chave
Biogeosciences, 11, 6827–6840, https://doi.org/10.5194/bg-11-6827-2014, https://doi.org/10.5194/bg-11-6827-2014, 2014
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Forest carbon mapping may greatly reduce uncertainties in the global carbon budget. Accuracy of such maps depends however on the quality of field measurements. Using 30 large forest plots, we found large local spatial variability in biomass. When field calibration plots are smaller than the remote sensing pixels, this high local spatial variability results in an underestimation of the variance in biomass.
G. B. Bonan, M. Williams, R. A. Fisher, and K. W. Oleson
Geosci. Model Dev., 7, 2193–2222, https://doi.org/10.5194/gmd-7-2193-2014, https://doi.org/10.5194/gmd-7-2193-2014, 2014
R. Q. Thomas and M. Williams
Geosci. Model Dev., 7, 2015–2037, https://doi.org/10.5194/gmd-7-2015-2014, https://doi.org/10.5194/gmd-7-2015-2014, 2014
G. Xenakis and M. Williams
Geosci. Model Dev., 7, 1519–1533, https://doi.org/10.5194/gmd-7-1519-2014, https://doi.org/10.5194/gmd-7-1519-2014, 2014
N. M. Fyllas, E. Gloor, L. M. Mercado, S. Sitch, C. A. Quesada, T. F. Domingues, D. R. Galbraith, A. Torre-Lezama, E. Vilanova, H. Ramírez-Angulo, N. Higuchi, D. A. Neill, M. Silveira, L. Ferreira, G. A. Aymard C., Y. Malhi, O. L. Phillips, and J. Lloyd
Geosci. Model Dev., 7, 1251–1269, https://doi.org/10.5194/gmd-7-1251-2014, https://doi.org/10.5194/gmd-7-1251-2014, 2014
T. R. Marthews, C. A. Quesada, D. R. Galbraith, Y. Malhi, C. E. Mullins, M. G. Hodnett, and I. Dharssi
Geosci. Model Dev., 7, 711–723, https://doi.org/10.5194/gmd-7-711-2014, https://doi.org/10.5194/gmd-7-711-2014, 2014
G. P. Asner, C. B. Anderson, R. E. Martin, D. E. Knapp, R. Tupayachi, F. Sinca, and Y. Malhi
Biogeosciences, 11, 843–856, https://doi.org/10.5194/bg-11-843-2014, https://doi.org/10.5194/bg-11-843-2014, 2014
T. L. Smallman, M. Williams, and J. B. Moncrieff
Biogeosciences, 11, 735–747, https://doi.org/10.5194/bg-11-735-2014, https://doi.org/10.5194/bg-11-735-2014, 2014
R. Valentini, A. Arneth, A. Bombelli, S. Castaldi, R. Cazzolla Gatti, F. Chevallier, P. Ciais, E. Grieco, J. Hartmann, M. Henry, R. A. Houghton, M. Jung, W. L. Kutsch, Y. Malhi, E. Mayorga, L. Merbold, G. Murray-Tortarolo, D. Papale, P. Peylin, B. Poulter, P. A. Raymond, M. Santini, S. Sitch, G. Vaglio Laurin, G. R. van der Werf, C. A. Williams, and R. J. Scholes
Biogeosciences, 11, 381–407, https://doi.org/10.5194/bg-11-381-2014, https://doi.org/10.5194/bg-11-381-2014, 2014
T. L. Smallman, J. B. Moncrieff, and M. Williams
Geosci. Model Dev., 6, 1079–1093, https://doi.org/10.5194/gmd-6-1079-2013, https://doi.org/10.5194/gmd-6-1079-2013, 2013
A. D. A. Castanho, M. T. Coe, M. H. Costa, Y. Malhi, D. Galbraith, and C. A. Quesada
Biogeosciences, 10, 2255–2272, https://doi.org/10.5194/bg-10-2255-2013, https://doi.org/10.5194/bg-10-2255-2013, 2013
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Extending a land-surface model with Sphagnum moss to simulate responses of a northern temperate bog to whole ecosystem warming and elevated CO2
Improving the representation of high-latitude vegetation distribution in dynamic global vegetation models
Robust processing of airborne laser scans to plant area density profiles
Investigating the sensitivity of soil heterotrophic respiration to recent snow cover changes in Alaska using a satellite-based permafrost carbon model
Hysteretic temperature sensitivity of wetland CH4 fluxes explained by substrate availability and microbial activity
Modelling the habitat preference of two key Sphagnum species in a poor fen as controlled by capitulum water content
Evaluating two soil carbon models within the global land surface model JSBACH using surface and spaceborne observations of atmospheric CO2
Assessing impacts of selective logging on water, energy, and carbon budgets and ecosystem dynamics in Amazon forests using the Functionally Assembled Terrestrial Ecosystem Simulator
Microbial dormancy and its impacts on northern temperate and boreal terrestrial ecosystem carbon budget
Impacts of fertilization on grassland productivity and water quality across the European Alps: insights from a mechanistic model
Historical CO2 emissions from land use and land cover change and their uncertainty
A Bayesian approach to evaluation of soil biogeochemical models
Rainfall intensification increases the contribution of rewetting pulses to soil heterotrophic respiration
Wide discrepancies in the magnitude and direction of modeled solar-induced chlorophyll fluorescence in response to light conditions
Modeling biological nitrogen fixation in global natural terrestrial ecosystems
The impact of a simple representation of non-structural carbohydrates on the simulated response of tropical forests to drought
Benchmarking and parameter sensitivity of physiological and vegetation dynamics using the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) at Barro Colorado Island, Panama
Modelling nitrification inhibitor effects on N2O emissions after fall- and spring-applied slurry by reducing nitrifier NH4+ oxidation rate
DRIFTS band areas as measured pool size proxy to reduce parameter uncertainty in soil organic matter models
Wintertime grassland dynamics may influence belowground biomass under climate change: a model analysis
Understanding the effect of fire on vegetation composition and gross primary production in a semi-arid shrubland ecosystem using the Ecosystem Demography (EDv2.2) model
Low sensitivity of gross primary production to elevated CO2 in a mature eucalypt woodland
Metabolic tradeoffs and heterogeneity in microbial responses to temperature determine the fate of litter carbon in simulations of a warmer world
Competition alters predicted forest carbon cycle responses to nitrogen availability and elevated CO2: simulations using an explicitly competitive, game-theoretic vegetation demographic model
Modelling the response of net primary productivity of the Zambezi teak forests to climate change along a rainfall gradient in Zambia
Three decades of simulated global terrestrial carbon fluxes from a data assimilation system confronted with different periods of observations
Using a modified DNDC biogeochemical model to optimize field management of a multi-crop (cotton, wheat, and maize) system: a site-scale case study in northern China
Decadal fates and impacts of nitrogen additions on temperate forest carbon storage: a data–model comparison
Global NO and HONO emissions of biological soil crusts estimated by a process-based non-vascular vegetation model
Estimating the soil N2O emission intensity of croplands in northwest Europe
Unifying soil organic matter formation and persistence frameworks: the MEMS model
Evaluating the simulated mean soil carbon transit times by Earth system models using observations
Modeling anaerobic soil organic carbon decomposition in Arctic polygon tundra: insights into soil geochemical influences on carbon mineralization
Neglecting plant–microbe symbioses leads to underestimation of modeled climate impacts
A simple time-stepping scheme to simulate leaf area index, phenology, and gross primary production across deciduous broadleaf forests in the eastern United States
Quantifying global N2O emissions from natural ecosystem soils using trait-based biogeochemistry models
Optimal inverse estimation of ecosystem parameters from observations of carbon and energy fluxes
Emergent relationships with respect to burned area in global satellite observations and fire-enabled vegetation models
Evaluation of simulated ozone effects in forest ecosystems against biomass damage estimates from fumigation experiments
Leaf area index identified as a major source of variability in modeled CO2 fertilization
An improved parameterization of leaf area index (LAI) seasonality in the Canadian Land Surface Scheme (CLASS) and Canadian Terrestrial Ecosystem Model (CTEM) modelling framework
Ecosystem carbon transit versus turnover times in response to climate warming and rising atmospheric CO2 concentration
Linking big models to big data: efficient ecosystem model calibration through Bayesian model emulation
Controls of terrestrial ecosystem nitrogen loss on simulated productivity responses to elevated CO2
The impact of spatiotemporal variability in atmospheric CO2 concentration on global terrestrial carbon fluxes
Microbial decomposition processes and vulnerable arctic soil organic carbon in the 21st century
Diffusion limitations and Michaelis–Menten kinetics as drivers of combined temperature and moisture effects on carbon fluxes of mineral soils
An evaluation of SMOS L-band vegetation optical depth (L-VOD) data sets: high sensitivity of L-VOD to above-ground biomass in Africa
Global soil organic carbon removal by water erosion under climate change and land use change during AD 1850–2005
Carlos A. Sierra, Susan E. Crow, Martin Heimann, Holger Metzler, and Ernst-Detlef Schulze
Biogeosciences, 18, 1029–1048, https://doi.org/10.5194/bg-18-1029-2021, https://doi.org/10.5194/bg-18-1029-2021, 2021
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The climate benefit of carbon sequestration (CBS) is a metric developed to quantify avoided warming by two separate processes: the amount of carbon drawdown from the atmosphere and the time this carbon is stored in a reservoir. This metric can be useful for quantifying the role of forests and soils for climate change mitigation and to better quantify the benefits of carbon removals by sinks.
Xiaoying Shi, Daniel M. Ricciuto, Peter E. Thornton, Xiaofeng Xu, Fengming Yuan, Richard J. Norby, Anthony P. Walker, Jeffrey M. Warren, Jiafu Mao, Paul J. Hanson, Lin Meng, David Weston, and Natalie A. Griffiths
Biogeosciences, 18, 467–486, https://doi.org/10.5194/bg-18-467-2021, https://doi.org/10.5194/bg-18-467-2021, 2021
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The Sphagnum mosses are the important species of a wetland ecosystem. To better represent the peatland ecosystem, we introduced the moss species to the land model component (ELM) of the Energy Exascale Earth System Model (E3SM) by developing water content dynamics and nonvascular photosynthetic processes for moss. We tested the model against field observations and used the model to make projections of the site's carbon cycle under warming and atmospheric CO2 concentration scenarios.
Peter Horvath, Hui Tang, Rune Halvorsen, Frode Stordal, Lena Merete Tallaksen, Terje Koren Berntsen, and Anders Bryn
Biogeosciences, 18, 95–112, https://doi.org/10.5194/bg-18-95-2021, https://doi.org/10.5194/bg-18-95-2021, 2021
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We evaluated the performance of three methods for representing vegetation cover. Remote sensing provided the best match to a reference dataset, closely followed by distribution modelling (DM), whereas the dynamic global vegetation model (DGVM) in CLM4.5BGCDV deviated strongly from the reference. Sensitivity tests show that use of threshold values for predictors identified by DM may improve DGVM performance. The results highlight the potential of using DM in the development of DGVMs.
Johan Arnqvist, Julia Freier, and Ebba Dellwik
Biogeosciences, 17, 5939–5952, https://doi.org/10.5194/bg-17-5939-2020, https://doi.org/10.5194/bg-17-5939-2020, 2020
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Data generated by airborne laser scans enable the characterization of surface vegetation for any application that might need it, such as forest management, modeling for numerical weather prediction, or wind energy estimation. In this work we present a new algorithm for calculating the vegetation density using data from airborne laser scans. The new routine is more robust than earlier methods, and an implementation in popular programming languages accompanies the article to support new users.
Yonghong Yi, John S. Kimball, Jennifer D. Watts, Susan M. Natali, Donatella Zona, Junjie Liu, Masahito Ueyama, Hideki Kobayashi, Walter Oechel, and Charles E. Miller
Biogeosciences, 17, 5861–5882, https://doi.org/10.5194/bg-17-5861-2020, https://doi.org/10.5194/bg-17-5861-2020, 2020
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We developed a 1 km satellite-data-driven permafrost carbon model to evaluate soil respiration sensitivity to recent snow cover changes in Alaska. Results show earlier snowmelt enhances growing-season soil respiration and reduces annual carbon uptake, while early cold-season soil respiration is linked to the number of snow-free days after the land surface freezes. Our results also show nonnegligible influences of subgrid variability in surface conditions on model-simulated CO2 seasonal cycles.
Kuang-Yu Chang, William J. Riley, Patrick M. Crill, Robert F. Grant, and Scott R. Saleska
Biogeosciences, 17, 5849–5860, https://doi.org/10.5194/bg-17-5849-2020, https://doi.org/10.5194/bg-17-5849-2020, 2020
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Methane (CH4) is a strong greenhouse gas that can accelerate climate change and offset mitigation efforts. A key assumption embedded in many large-scale climate models is that ecosystem CH4 emissions can be estimated by fixed temperature relations. Here, we demonstrate that CH4 emissions cannot be parameterized by emergent temperature response alone due to variability driven by microbial and abiotic interactions. We also provide mechanistic understanding for observed CH4 emission hysteresis.
Jinnan Gong, Nigel Roulet, Steve Frolking, Heli Peltola, Anna M. Laine, Nicola Kokkonen, and Eeva-Stiina Tuittila
Biogeosciences, 17, 5693–5719, https://doi.org/10.5194/bg-17-5693-2020, https://doi.org/10.5194/bg-17-5693-2020, 2020
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In this study, which combined a field and lab experiment with modelling, we developed a process-based model for simulating dynamics within peatland moss communities. The model is useful because Sphagnum mosses are key engineers in peatlands; their response to changes in climate via altered hydrology controls the feedback of peatland biogeochemistry to climate. Our work showed that moss capitulum traits related to water retention are the mechanism controlling moss layer dynamics in peatlands.
Tea Thum, Julia E. M. S. Nabel, Aki Tsuruta, Tuula Aalto, Edward J. Dlugokencky, Jari Liski, Ingrid T. Luijkx, Tiina Markkanen, Julia Pongratz, Yukio Yoshida, and Sönke Zaehle
Biogeosciences, 17, 5721–5743, https://doi.org/10.5194/bg-17-5721-2020, https://doi.org/10.5194/bg-17-5721-2020, 2020
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Global vegetation models are important tools in estimating the impacts of global climate change. The fate of soil carbon is of the upmost importance as its emissions will enhance the atmospheric carbon dioxide concentration. To evaluate the skill of global vegetation models to model the soil carbon and its responses to environmental factors, it is important to use different data sources. We evaluated two different soil carbon models by using atmospheric carbon dioxide concentrations.
Maoyi Huang, Yi Xu, Marcos Longo, Michael Keller, Ryan G. Knox, Charles D. Koven, and Rosie A. Fisher
Biogeosciences, 17, 4999–5023, https://doi.org/10.5194/bg-17-4999-2020, https://doi.org/10.5194/bg-17-4999-2020, 2020
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The Functionally Assembled Terrestrial Ecosystem Simulator (FATES) is enhanced to mimic the ecological, biophysical, and biogeochemical processes following a logging event. The model can specify the timing and aerial extent of logging events; determine the survivorship of cohorts in the disturbed forest; and modifying the biomass, coarse woody debris, and litter pools. This study lays the foundation to simulate land use change and forest degradation in FATES as part of an Earth system model.
Junrong Zha and Qianla Zhuang
Biogeosciences, 17, 4591–4610, https://doi.org/10.5194/bg-17-4591-2020, https://doi.org/10.5194/bg-17-4591-2020, 2020
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This study incorporated microbial dormancy into a detailed microbe-based biogeochemistry model to examine the fate of Arctic carbon budgets under changing climate conditions. Compared with the model without microbial dormancy, the new model estimated a much higher carbon accumulation in the region during the last and current century. This study highlights the importance of the representation of microbial dormancy in earth system models to adequately quantify the carbon dynamics in the Arctic.
Martina Botter, Matthias Zeeman, Paolo Burlando, and Simone Fatichi
Biogeosciences Discuss., https://doi.org/10.5194/bg-2020-294, https://doi.org/10.5194/bg-2020-294, 2020
Revised manuscript accepted for BG
Thomas Gasser, Léa Crepin, Yann Quilcaille, Richard A. Houghton, Philippe Ciais, and Michael Obersteiner
Biogeosciences, 17, 4075–4101, https://doi.org/10.5194/bg-17-4075-2020, https://doi.org/10.5194/bg-17-4075-2020, 2020
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We combine several lines of evidence to provide a robust estimate of historical CO2 emissions from land use change. Our novel approach leads to reduced uncertainty and identifies key remaining sources of uncertainty and discrepancy.
We also quantify the carbon removal by natural ecosystems that would have occurred if these ecosystems had not been destroyed (mostly via deforestation). Over the last decade, this foregone carbon sink amounted to about 50 % of the actual emissions.
Hua W. Xie, Adriana L. Romero-Olivares, Michele Guindani, and Steven D. Allison
Biogeosciences, 17, 4043–4057, https://doi.org/10.5194/bg-17-4043-2020, https://doi.org/10.5194/bg-17-4043-2020, 2020
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Soil biogeochemical models (SBMs) are needed to predict future soil CO2 emissions levels, but we presently lack statistically rigorous frameworks for assessing the predictive utility of SBMs. In this study, we demonstrate one possible approach to evaluating SBMs by comparing the fits of two models to soil CO2 respiration data with recently developed Bayesian statistical goodness-of-fit metrics. Our results demonstrate that our approach is a viable one for continued development and refinement.
Stefano Manzoni, Arjun Chakrawal, Thomas Fischer, Joshua P. Schimel, Amilcare Porporato, and Giulia Vico
Biogeosciences, 17, 4007–4023, https://doi.org/10.5194/bg-17-4007-2020, https://doi.org/10.5194/bg-17-4007-2020, 2020
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Carbon dioxide is produced by soil microbes through respiration, which is particularly fast when soils are moistened by rain. Will respiration increase with future more intense rains and longer dry spells? With a mathematical model, we show that wetter conditions increase respiration. In contrast, if rainfall totals stay the same, but rain comes all at once after long dry spells, the average respiration will not change, but the contribution of the respiration bursts after rain will increase.
Nicholas C. Parazoo, Troy Magney, Alex Norton, Brett Raczka, Cédric Bacour, Fabienne Maignan, Ian Baker, Yongguang Zhang, Bo Qiu, Mingjie Shi, Natasha MacBean, Dave R. Bowling, Sean P. Burns, Peter D. Blanken, Jochen Stutz, Katja Grossmann, and Christian Frankenberg
Biogeosciences, 17, 3733–3755, https://doi.org/10.5194/bg-17-3733-2020, https://doi.org/10.5194/bg-17-3733-2020, 2020
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Satellite measurements of solar-induced chlorophyll fluorescence (SIF) provide a global measure of photosynthetic change. This enables scientists to better track carbon cycle responses to environmental change and tune biochemical processes in vegetation models for an improved simulation of future change. We use tower-instrumented SIF measurements and controlled model experiments to assess the state of the art in terrestrial biosphere SIF modeling and find a wide range of sensitivities to light.
Tong Yu and Qianlai Zhuang
Biogeosciences, 17, 3643–3657, https://doi.org/10.5194/bg-17-3643-2020, https://doi.org/10.5194/bg-17-3643-2020, 2020
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Biological nitrogen fixation (BNF) plays an important role in the global nitrogen cycle. However, the fixation rate has usually been measured or estimated at a particular observational site. This study develops a BNF model considering the symbiotic relationship between legume plants and bacteria. The model is extensively calibrated with site-level observational data and then extrapolated to the global terrestrial ecosystems to quantify the fixation rate in the 1990s.
Simon Jones, Lucy Rowland, Peter Cox, Deborah Hemming, Andy Wiltshire, Karina Williams, Nicholas C. Parazoo, Junjie Liu, Antonio C. L. da Costa, Patrick Meir, Maurizio Mencuccini, and Anna B. Harper
Biogeosciences, 17, 3589–3612, https://doi.org/10.5194/bg-17-3589-2020, https://doi.org/10.5194/bg-17-3589-2020, 2020
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Non-structural carbohydrates (NSCs) are an important set of molecules that help plants to grow and respire when photosynthesis is restricted by extreme climate events. In this paper we present a simple model of NSC storage and assess the effect that it has on simulations of vegetation at the ecosystem scale. Our model has the potential to significantly change predictions of plant behaviour in global vegetation models, which would have large implications for predictions of the future climate.
Charles D. Koven, Ryan G. Knox, Rosie A. Fisher, Jeffrey Q. Chambers, Bradley O. Christoffersen, Stuart J. Davies, Matteo Detto, Michael C. Dietze, Boris Faybishenko, Jennifer Holm, Maoyi Huang, Marlies Kovenock, Lara M. Kueppers, Gregory Lemieux, Elias Massoud, Nathan G. McDowell, Helene C. Muller-Landau, Jessica F. Needham, Richard J. Norby, Thomas Powell, Alistair Rogers, Shawn P. Serbin, Jacquelyn K. Shuman, Abigail L. S. Swann, Charuleka Varadharajan, Anthony P. Walker, S. Joseph Wright, and Chonggang Xu
Biogeosciences, 17, 3017–3044, https://doi.org/10.5194/bg-17-3017-2020, https://doi.org/10.5194/bg-17-3017-2020, 2020
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Tropical forests play a crucial role in governing climate feedbacks, and are incredibly diverse ecosystems, yet most Earth system models do not take into account the diversity of plant traits in these forests and how this diversity may govern feedbacks. We present an approach to represent diverse competing plant types within Earth system models, test this approach at a tropical forest site, and explore how the representation of disturbance and competition governs traits of the forest community.
Robert F. Grant, Sisi Lin, and Guillermo Hernandez-Ramirez
Biogeosciences, 17, 2021–2039, https://doi.org/10.5194/bg-17-2021-2020, https://doi.org/10.5194/bg-17-2021-2020, 2020
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Nitrification inhibitors (NI) have been shown to reduce emissions of nitrous oxide (N20), a potent greenhouse gas, from fertilizer and manure applied to agricultural fields. However difficulties in measuring N20 emissions limit our ability to estimate these reductions. Here we propose and test a mathematical model that may allow us to estimate these reductions under diverse site conditions. These estimates will be useful in determining emission factors for NI-amended fertilizer and manure.
Moritz Laub, Michael Scott Demyan, Yvonne Funkuin Nkwain, Sergey Blagodatsky, Thomas Kätterer, Hans-Peter Piepho, and Georg Cadisch
Biogeosciences, 17, 1393–1413, https://doi.org/10.5194/bg-17-1393-2020, https://doi.org/10.5194/bg-17-1393-2020, 2020
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Loss of soil carbon to the atmosphere represents a global challenge. We tested an innovative way to reduce the high uncertainty related to turnover of carbon stored in soils. With the use of infrared spectra of soils from model bare fallow systems, we were able to better assess the current state of soil carbon and predict its behavior in overdecadal time spans. In agreement with recent studies, carbon turnover seems faster than earlier assumed, with potential for high loss under mismanagement.
Genki Katata, Rüdiger Grote, Matthias Mauder, Matthias J. Zeeman, and Masakazu Ota
Biogeosciences, 17, 1071–1085, https://doi.org/10.5194/bg-17-1071-2020, https://doi.org/10.5194/bg-17-1071-2020, 2020
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In this paper, we demonstrate that high physiological activity levels during the extremely warm winter are allocated into the below-ground biomass and only to a minor extent used for additional plant growth during early spring. This process is so far largely unaccounted for in scenario analysis using global terrestrial biosphere models, and it may lead to carbon accumulation in the soil and/or carbon loss from the soil as a response to global warming.
Karun Pandit, Hamid Dashti, Andrew T. Hudak, Nancy F. Glenn, Alejandro N. Flores, and Douglas J. Shinneman
Biogeosciences Discuss., https://doi.org/10.5194/bg-2019-510, https://doi.org/10.5194/bg-2019-510, 2020
Revised manuscript accepted for BG
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Our study explores the application of a dynamic global vegetation model, Ecosystem Demography (EDv2.2) to understand temporal dynamics of ecosystem under alternate fire regimes and the spatial behavior of post-fire restoration. Point-based simulations suggested dominance of shrub in a non-fire scenario and contrasting phases of shrub and C3 grass growth for a fire scenario. Regional simulations showed a decline in GPP for fire affected areas for initial couple of years before showing recovery.
Jinyan Yang, Belinda E. Medlyn, Martin G. De Kauwe, Remko A. Duursma, Mingkai Jiang, Dushan Kumarathunge, Kristine Y. Crous, Teresa E. Gimeno, Agnieszka Wujeska-Klause, and David S. Ellsworth
Biogeosciences, 17, 265–279, https://doi.org/10.5194/bg-17-265-2020, https://doi.org/10.5194/bg-17-265-2020, 2020
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This study addressed a major knowledge gap in the response of forest productivity to elevated CO2. We first quantified forest productivity of an evergreen forest under both ambient and elevated CO2, using a model constrained by in situ measurements. The simulation showed the canopy productivity response to elevated CO2 to be smaller than that at the leaf scale due to different limiting processes. This finding provides a key reference for the understanding of CO2 impacts on forest ecosystems.
Grace Pold, Seeta A. Sistla, and Kristen M. DeAngelis
Biogeosciences, 16, 4875–4888, https://doi.org/10.5194/bg-16-4875-2019, https://doi.org/10.5194/bg-16-4875-2019, 2019
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The litter decomposition model DEMENT was run under ambient temperatures and with 5 °C; of warming. We found that the loss of litter carbon to the atmosphere as CO2 was exacerbated by warming when the microbes in the model differed in their temperature responses, compared to when all microbes responded identically to warming. Our results therefore indicate that predicted changes in litter carbon stocks are sensitive to heterogeneity in key parameters of soil decomposer physiology.
Ensheng Weng, Ray Dybzinski, Caroline E. Farrior, and Stephen W. Pacala
Biogeosciences, 16, 4577–4599, https://doi.org/10.5194/bg-16-4577-2019, https://doi.org/10.5194/bg-16-4577-2019, 2019
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Our study illustrates that the competition processes for light and soil resources in a game-theoretic vegetation demographic model can substantially change the prediction of the contribution of ecosystems to the global carbon cycle. The model that tracks the competitive allocation strategies can generate significantly different ecosystem-level predictions than those with fixed allocation strategies.
Justine Ngoma, Maarten C. Braakhekke, Bart Kruijt, Eddy Moors, Iwan Supit, James H. Speer, Royd Vinya, and Rik Leemans
Biogeosciences, 16, 3853–3867, https://doi.org/10.5194/bg-16-3853-2019, https://doi.org/10.5194/bg-16-3853-2019, 2019
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The Zambezi teak forests are a source of raw material for the timber industry. Through application of the LPJ-GUESS vegetation model, we determined the forests' response to climate change at the wetter Kabompo, drier Sesheke, and intermediate Namwala sites in Zambia. While increased CO2 concentration enhances forests' productivity at Kabompo and Namwala, the decreased rainfall will reduce forests' productivity at Sesheke by the year 2099, resulting in reduced raw material for saw millers.
Karel Castro-Morales, Gregor Schürmann, Christoph Köstler, Christian Rödenbeck, Martin Heimann, and Sönke Zaehle
Biogeosciences, 16, 3009–3032, https://doi.org/10.5194/bg-16-3009-2019, https://doi.org/10.5194/bg-16-3009-2019, 2019
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To obtain nearly 30 years of global terrestrial carbon fluxes, we simultaneously incorporated in a land surface model three different time periods of two observational data sets: absorbed photosynthetic active radiation and atmospheric CO2 concentrations. One decade of data is enough to improve the modeled long-term trends and seasonal amplitudes of the assimilated variables, particularly in boreal regions. This model has the potential to provide short-term predictions of land carbon fluxes.
Wei Zhang, Chunyan Liu, Xunhua Zheng, Kai Wang, Feng Cui, Rui Wang, Siqi Li, Zhisheng Yao, and Jiang Zhu
Biogeosciences, 16, 2905–2922, https://doi.org/10.5194/bg-16-2905-2019, https://doi.org/10.5194/bg-16-2905-2019, 2019
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A biogeochemical process model-based approach for screening the best management practices (BMPs) of a three-crop system was proposed. The BMPs are the management alternatives with the lowest negative impact potentials that still satisfy all given constraints. Three BMP alternatives with overlapping uncertainties of simulated NIPs were screened from 6000 scenarios using the modified DNDC95 model, which could sustain crop yields, enlarge SOC stock, mitigate GHG, and reduce other nitrogen losses.
Susan J. Cheng, Peter G. Hess, William R. Wieder, R. Quinn Thomas, Knute J. Nadelhoffer, Julius Vira, Danica L. Lombardozzi, Per Gundersen, Ivan J. Fernandez, Patrick Schleppi, Marie-Cécile Gruselle, Filip Moldan, and Christine L. Goodale
Biogeosciences, 16, 2771–2793, https://doi.org/10.5194/bg-16-2771-2019, https://doi.org/10.5194/bg-16-2771-2019, 2019
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Nitrogen deposition and fertilizer can change how much carbon is stored in plants and soils. Understanding how much added nitrogen is recovered in plants or soils is critical to estimating the size of the future land carbon sink. We compared how nitrogen additions are recovered in modeled soil and plant stocks against data from long-term nitrogen addition experiments. We found that the model simulates recovery of added nitrogen into soils through a different process than found in the field.
Philipp Porada, Alexandra Tamm, Jose Raggio, Yafang Cheng, Axel Kleidon, Ulrich Pöschl, and Bettina Weber
Biogeosciences, 16, 2003–2031, https://doi.org/10.5194/bg-16-2003-2019, https://doi.org/10.5194/bg-16-2003-2019, 2019
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The trace gases NO and HONO are crucial for atmospheric chemistry. It has been suggested that biological soil crusts in drylands contribute substantially to global NO and HONO emissions, based on empirical upscaling of laboratory and field observations. Here we apply an alternative, process-based modeling approach to predict these emissions. We find that biological soil crusts emit globally significant amounts of NO and HONO, which also vary depending on the type of biological soil crust.
Vasileios Myrgiotis, Mathew Williams, Robert M. Rees, and Cairistiona F. E. Topp
Biogeosciences, 16, 1641–1655, https://doi.org/10.5194/bg-16-1641-2019, https://doi.org/10.5194/bg-16-1641-2019, 2019
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This study focuses on a northwestern European cropland region and shows that the type of crop growing on a soil has notable effects on the emission of nitrous oxide (N2O – a greenhouse gas) from that soil. It was found that N2O emissions from soils under oilseed cultivation are significantly higher than soils under cereal cultivation. This variation is mostly explained by the fact that oilseeds require more nitrogen (fertiliser) than cereals, especially at early crop growth stages.
Andy D. Robertson, Keith Paustian, Stephen Ogle, Matthew D. Wallenstein, Emanuele Lugato, and M. Francesca Cotrufo
Biogeosciences, 16, 1225–1248, https://doi.org/10.5194/bg-16-1225-2019, https://doi.org/10.5194/bg-16-1225-2019, 2019
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Predicting how soils respond to varying environmental conditions or land-use change is essential if we aim to promote sustainable management practices and help mitigate climate change. Here, we present a new ecosystem-scale soil model (MEMS v1) that is built upon recent, novel findings and can be run using very few inputs. The model accurately predicted soil carbon stocks for more than 8000 sites across Europe, ranging from cold, wet forests in sandy soils to hot, dry grasslands in clays.
Jing Wang, Jianyang Xia, Xuhui Zhou, Kun Huang, Jian Zhou, Yuanyuan Huang, Lifen Jiang, Xia Xu, Junyi Liang, Ying-Ping Wang, Xiaoli Cheng, and Yiqi Luo
Biogeosciences, 16, 917–926, https://doi.org/10.5194/bg-16-917-2019, https://doi.org/10.5194/bg-16-917-2019, 2019
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Soil is critical in mitigating climate change mainly because soil carbon turns over much slower in soils than vegetation and the atmosphere. However, Earth system models (ESMs) have large uncertainty in simulating carbon dynamics due to their biased estimation of soil carbon transit time (τsoil). Here, the τsoil estimates from 12 ESMs that participated in CMIP5 were evaluated by a database of measured τsoil. We detected a large spatial variation in measured τsoil across the globe.
Jianqiu Zheng, Peter E. Thornton, Scott L. Painter, Baohua Gu, Stan D. Wullschleger, and David E. Graham
Biogeosciences, 16, 663–680, https://doi.org/10.5194/bg-16-663-2019, https://doi.org/10.5194/bg-16-663-2019, 2019
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Arctic warming exposes soil carbon to increased degradation, increasing CO2 and CH4 emissions. Models underrepresent anaerobic decomposition that predominates wet soils. We simulated microbial growth, pH regulation, and anaerobic carbon decomposition in a new model, parameterized and validated with prior soil incubation data. The model accurately simulated CO2 production and strong influences of water content, pH, methanogen biomass, and competing electron acceptors on CH4 production.
Mingjie Shi, Joshua B. Fisher, Richard P. Phillips, and Edward R. Brzostek
Biogeosciences, 16, 457–465, https://doi.org/10.5194/bg-16-457-2019, https://doi.org/10.5194/bg-16-457-2019, 2019
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The ability of plants to slow climate change by taking up carbon hinges in part on there being ample soil nitrogen. We used a model that accounts for the carbon cost to plants of supporting nitrogen-acquiring microbes to explore how nitrogen limitation affects climate. Our model predicted that nitrogen limitation will enhance temperature and decrease precipitation; thus, our results suggest that carbon spent to support nitrogen-acquiring microbes is a critical component of the Earth's climate.
Qinchuan Xin, Yongjiu Dai, and Xiaoping Liu
Biogeosciences, 16, 467–484, https://doi.org/10.5194/bg-16-467-2019, https://doi.org/10.5194/bg-16-467-2019, 2019
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Terrestrial biosphere models that simulate both leaf dynamics and canopy photosynthesis are required to understand vegetation–climate interactions. A time-stepping scheme is proposed to simulate leaf area index, phenology, and gross primary production via climate variables. The method performs well on simulating deciduous broadleaf forests across the eastern United States; it provides a simplified and improved version of the growing production day model for use in land surface modeling.
Tong Yu and Qianlai Zhuang
Biogeosciences, 16, 207–222, https://doi.org/10.5194/bg-16-207-2019, https://doi.org/10.5194/bg-16-207-2019, 2019
Debsunder Dutta, David S. Schimel, Ying Sun, Christiaan van der Tol, and Christian Frankenberg
Biogeosciences, 16, 77–103, https://doi.org/10.5194/bg-16-77-2019, https://doi.org/10.5194/bg-16-77-2019, 2019
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Canopy structural and leaf photosynthesis parameterizations are often fixed over time in Earth system models and represent large sources of uncertainty in predictions of carbon and water fluxes. We develop a moving window nonlinear optimal parameter inversion framework using constraining flux and satellite reflectance observations. The results demonstrate the applicability of the approach for error reduction and capturing the seasonal variability of key ecosystem parameters.
Matthias Forkel, Niels Andela, Sandy P. Harrison, Gitta Lasslop, Margreet van Marle, Emilio Chuvieco, Wouter Dorigo, Matthew Forrest, Stijn Hantson, Angelika Heil, Fang Li, Joe Melton, Stephen Sitch, Chao Yue, and Almut Arneth
Biogeosciences, 16, 57–76, https://doi.org/10.5194/bg-16-57-2019, https://doi.org/10.5194/bg-16-57-2019, 2019
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Weather, humans, and vegetation control the occurrence of fires. In this study we find that global fire–vegetation models underestimate the strong increase of burned area with higher previous-season plant productivity in comparison to satellite-derived relationships.
Martina Franz, Rocio Alonso, Almut Arneth, Patrick Büker, Susana Elvira, Giacomo Gerosa, Lisa Emberson, Zhaozhong Feng, Didier Le Thiec, Riccardo Marzuoli, Elina Oksanen, Johan Uddling, Matthew Wilkinson, and Sönke Zaehle
Biogeosciences, 15, 6941–6957, https://doi.org/10.5194/bg-15-6941-2018, https://doi.org/10.5194/bg-15-6941-2018, 2018
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Four published ozone damage functions previously used in terrestrial biosphere models were evaluated regarding their ability to simulate observed biomass dose–response relationships using the O-CN model. Neither damage function was able to reproduce the observed ozone-induced biomass reductions. Calibrating a plant-functional-type-specific relationship between accumulated ozone uptake and leaf-level photosynthesis did lead to a good agreement between observed and modelled ozone damage.
Qianyu Li, Xingjie Lu, Yingping Wang, Xin Huang, Peter M. Cox, and Yiqi Luo
Biogeosciences, 15, 6909–6925, https://doi.org/10.5194/bg-15-6909-2018, https://doi.org/10.5194/bg-15-6909-2018, 2018
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Land-surface models have been widely used to predict the responses of terrestrial ecosystems to climate change. A better understanding of model mechanisms that govern terrestrial ecosystem responses to rising atmosphere [CO2] is needed. Our study for the first time shows that the expansion of leaf area under rising [CO2] is the most important response for the stimulation of land carbon accumulation by a land-surface model: CABLE. Processes related to leaf area should be better calibrated.
Ali Asaadi, Vivek K. Arora, Joe R. Melton, and Paul Bartlett
Biogeosciences, 15, 6885–6907, https://doi.org/10.5194/bg-15-6885-2018, https://doi.org/10.5194/bg-15-6885-2018, 2018
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Non-structural carbohydrates (NSCs), which play a central role in a plant's life processes and its response to environmental conditions, are typically not included in terrestrial biogeochemistry models used in Earth system models (ESMs). In this study, we include NSC pools in the framework of the land component of the Canadian ESM and show how they help address the long-standing problem of delayed leaf phenology.
Xingjie Lu, Ying-Ping Wang, Yiqi Luo, and Lifen Jiang
Biogeosciences, 15, 6559–6572, https://doi.org/10.5194/bg-15-6559-2018, https://doi.org/10.5194/bg-15-6559-2018, 2018
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How long does C cycle through terrestrial ecosystems is a critical question for understanding land C sequestration capacity under future rising atmosphere [CO2] and climate warming. Under climate change, previous conventional concepts with a steady-state assumption will no longer be suitable for a non-steady state. Our results using the new concept, C transit time, suggest more significant responses in terrestrial C cycle under rising [CO2] and climate warming.
Istem Fer, Ryan Kelly, Paul R. Moorcroft, Andrew D. Richardson, Elizabeth M. Cowdery, and Michael C. Dietze
Biogeosciences, 15, 5801–5830, https://doi.org/10.5194/bg-15-5801-2018, https://doi.org/10.5194/bg-15-5801-2018, 2018
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The computer models we use to understand and forecast the ecosystem changes have multiple components that determine their outcomes. Due to our limited observation capacities, these components bear uncertainties that in return affect our predictions. While there are techniques for reducing these uncertainties, they are not applicable to every model due to computational and statistical barriers. This research presents a method that lowers those barriers and allows us to improve model predictions.
Johannes Meyerholt and Sönke Zaehle
Biogeosciences, 15, 5677–5698, https://doi.org/10.5194/bg-15-5677-2018, https://doi.org/10.5194/bg-15-5677-2018, 2018
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Terrestrial biosphere models employ various representations of ecosystem nitrogen loss, some based on soil N availability, some based on net N mineralization. We show in local and global simulations that this variety leads to pronounced uncertainty in the predicted magnitude and sign of ecosystem N loss change under elevated CO2. Suprisingly, this uncertainty barely affects predicted carbon storage responses to elevated CO2, illustrating the need for new benchmarks especially in the boreal zone.
Eunjee Lee, Fan-Wei Zeng, Randal D. Koster, Brad Weir, Lesley E. Ott, and Benjamin Poulter
Biogeosciences, 15, 5635–5652, https://doi.org/10.5194/bg-15-5635-2018, https://doi.org/10.5194/bg-15-5635-2018, 2018
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Land carbon fluxes are controlled in part by the responses of terrestrial ecosystems to atmospheric conditions near the Earth's surface. This study offers a comprehensive evaluation of the consequences of multiple facets of spatiotemporal variability in atmospheric CO2 for carbon cycle dynamics. Globally, consideration of the diurnal CO2 variability reduces the gross primary production and net land carbon uptake. The relative contributions of other variability vary regionally and seasonally.
Junrong Zha and Qianlai Zhuang
Biogeosciences, 15, 5621–5634, https://doi.org/10.5194/bg-15-5621-2018, https://doi.org/10.5194/bg-15-5621-2018, 2018
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This study used a detailed microbial-based soil decomposition biogeochemistry model to examine the fate of much arctic soil carbon under changing climate conditions. We found that the detailed microbial decomposition biogeochemistry model estimated a much lower carbon accumulation in the region during this century. The amount of soil carbon considered in the 21st-century simulations determines the regional carbon sink and source strengths, regardless of the complexity of models used.
Fernando Esteban Moyano, Nadezda Vasilyeva, and Lorenzo Menichetti
Biogeosciences, 15, 5031–5045, https://doi.org/10.5194/bg-15-5031-2018, https://doi.org/10.5194/bg-15-5031-2018, 2018
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Soils are complex systems storing large quantities of carbon in the form of organic matter. Understanding how climatic drivers such as temperature and moisture influence the decomposition and thus the turnover of this carbon is crucial for predicting feedbacks between climate and soils. This study aims at improving our mechanistic understanding of how these factors interact to drive decomposition and thus modify the capacity of soils to emit or capture atmospheric CO2.
Nemesio J. Rodríguez-Fernández, Arnaud Mialon, Stephane Mermoz, Alexandre Bouvet, Philippe Richaume, Ahmad Al Bitar, Amen Al-Yaari, Martin Brandt, Thomas Kaminski, Thuy Le Toan, Yann H. Kerr, and Jean-Pierre Wigneron
Biogeosciences, 15, 4627–4645, https://doi.org/10.5194/bg-15-4627-2018, https://doi.org/10.5194/bg-15-4627-2018, 2018
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Existing global scale above-ground biomass (AGB) maps are made at very high spatial resolution collecting data during several years. In this paper we discuss the use of a new data set from the SMOS satellite: the vegetation optical depth estimated from low microwave frequencies. It is shown that this new data set is highly sensitive to AGB. The spacial resolution of SMOS is coarse (40 km) but the new data set can be used to monitor AGB variations with time due to its high revisit frequency.
Victoria Naipal, Philippe Ciais, Yilong Wang, Ronny Lauerwald, Bertrand Guenet, and Kristof Van Oost
Biogeosciences, 15, 4459–4480, https://doi.org/10.5194/bg-15-4459-2018, https://doi.org/10.5194/bg-15-4459-2018, 2018
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We seek to better understand the links between soil erosion by rainfall and the global carbon (C) cycle by coupling a soil erosion model to the C cycle of a land surface model. With this modeling approach we evaluate the effects of soil removal on soil C stocks in the presence of climate change and land use change. We find that accelerated soil erosion leads to a potential SOC removal flux of 74 ±18 Pg of C globally over the period AD 1850–2005, with significant impacts on the land C balance.
Cited articles
Anderegg, W. R. L.: Spatial and temporal variation in plant hydraulic traits
and their relevance for climate change impacts on vegetation, New Phytol.,
205, 1008–1014, 2015.
Aragao, L. E. O. C., Malhi, Y., Roman-Cuesta, R. M., Saatchi, S., Anderson,
L. O., and Shimabukuro, Y. E.: Spatial patterns and fire response of recent
Amazonian droughts, Geophys. Res. Lett., 34, L07701,
https://doi.org/10.1029/2006GL028946, 2007.
Aragao, L. E. O. C., Malhi, Y., Metcalfe, D. B., Silva-Espejo, J. E., Jiménez, E., Navarrete, D., Almeida, S., Costa, A. C. L., Salinas, N., Phillips, O. L., Anderson, L. O., Alvarez, E., Baker, T. R., Goncalvez, P. H., Huamán-Ovalle, J., Mamani-Solórzano, M., Meir, P., Monteagudo, A., Patiño, S., Peñuela, M. C., Prieto, A., Quesada, C. A., Rozas-Dávila, A., Rudas, A., Silva Jr., J. A., and Vásquez, R.: Above- and below-ground net primary productivity across ten Amazonian forests on contrasting soils, Biogeosciences, 6, 2759–2778, https://doi.org/10.5194/bg-6-2759-2009, 2009.
Asner, G. P. and Alencar, A.: Drought impacts on the Amazon forest: the
remote sensing perspective, New Phytol., 187, 569–578, 2010.
Asner, G. P., Scurlock, J. M. O., and Hicke, J. A.: Global synthesis of leaf
area index observations: implications for ecological and remote sensing
studies, Global Ecol. Biogeogr., 12, 191–205, 2003.
Asner, G. P., Martin, R. E., Anderson, C. B., and Knapp, D. E.: Quantifying
forest canopy traits: Imaging spectroscopy versus field survey, Remote Sens.
Environ., 158, 15–27, 2015.
Bahar, N. H., Ishida, F. Y., Weerasinghe, L. K., Guerrieri, R., O'Sullivan,
O. S., Bloomfield, K. J., Asner, G. P., Martin, R. E., Lloyd, J., Malhi, Y.,
Phillips, O. L., Meir, P., Salinas, N., Cosio, E. G., Domingues, T. F.,
Quesada, C. A., Sinca, F., Escudero Vega, A., Zuloaga Ccorimanya, P. P., Del
Aguila-Pasquel, J., Quispe Huaypar, K., Cuba Torres, I., Butron Loayza, R.,
Pelaez Tapia, Y., Huaman Ovalle, J., Long, B. M., Evans, J. R., and Atkin,
O. K.: Leaf-level photosynthetic capacity in lowland Amazonian and
high-elevation Andean tropical moist forests of Peru, New Phytol., 214,
1002–1018, 2017.
Baker, I. T., Prihodko, L., Denning, A. S., Goulden, M., Miller, S., and da
Rocha, H. R.: Seasonal drought stress in the Amazon: Reconciling models and
observations, J. Geophys. Res.-Biogeo., 113, G00B01,
https://doi.org/10.1029/2007JG000644, 2008.
Beer, C., Reichstein, M., Tomelleri, E., Ciais, P., Jung, M., Carvalhais,
N., Rödenbeck, C., Arain, M. A., Baldocchi, D., and Bonan, G. B.:
Terrestrial gross carbon dioxide uptake: global distribution and covariation
with climate, Science, 329, 834–838, 2010.
Bi, J., Knyazikhin, Y., Choi, S. H., Park, T., Barichivich, J., Ciais, P.,
Fu, R., Ganguly, S., Hall, F., Hilker, T., Huete, A., Jones, M., Kimball,
J., Lyapustin, A. I., Mottus, M., Nemani, R. R., Piao, S. L., Poulter, B.,
Saleska, S. R., Saatchi, S. S., Xu, L., Zhou, L. M., and Myneni, R. B.:
Sunlight mediated seasonality in canopy structure and photosynthetic
activity of Amazonian rainforests, Environ. Res. Lett., 10, 064014, https://doi.org/10.1088/1748-9326/10/6/064014, 2015.
Bloom, A. A. and Williams, M.: Constraining ecosystem carbon dynamics in a data-limited world: integrating ecological “common sense” in a model-data fusion framework, Biogeosciences, 12, 1299–1315, https://doi.org/10.5194/bg-12-1299-2015, 2015.
Bloom, A. J., Chapin, F. S., and Mooney, H. A.: Resource Limitation in
Plants – an Economic Analogy, Annu. Rev. Ecol. Syst., 16, 363–392, 1985.
Boisier, J. P., Ciais, P., Ducharne, A., and Guimberteau, M.: Projected
strengthening of Amazonian dry season by constrained climate model
simulations, Nat. Clim. Change, 5, 656–660, 2015.
Bonan, G. B., Williams, M., Fisher, R. A., and Oleson, K. W.: Modeling stomatal conductance in the earth system: linking leaf water-use efficiency and water transport along the soil-plant-atmosphere continuum, Geosci. Model Dev., 7, 2193–2222, https://doi.org/10.5194/gmd-7-2193-2014, 2014.
Brando, P. M., Nepstad, D. C., Davidson, E. A., Trumbore, S. E., Ray, D.,
and Camargo, P.: Drought effects on litterfall, wood production and
belowground carbon cycling in an Amazon forest: results of a throughfall
reduction experiment, Philos. T. R. Soc. B, 363, 1839–1848, 2008.
Brando, P. M., Goetz, S. J., Baccini, A., Nepstad, D. C., Beck, P. S., and
Christman, M. C.: Seasonal and interannual variability of climate and
vegetation indices across the Amazon, P. Natl. Acad. Sci. USA, 107,
14685–14690, 2010.
Bréda, N. J. J.: Ground-based measurements of leaf area index: a review
of methods, instruments and current controversies, J. Exp. Bot., 54,
2403–2417, 2003.
Breiman, L.: Random forests, Mach. Learn., 45, 5–32, 2001.
Carswell, F. E., Costa, A. L., Palheta, M., Malhi, Y., Meir, P., Costa, J.
D. R., Ruivo, M. D., Leal, L. D. M., Costa, J. M. N., Clement, R. J., and
Grace, J.: Seasonality in CO2 and H2O flux at an eastern Amazonian
rain forest, J. Geophys. Res.-Atmos, 107, D208076,
https://doi.org/10.1029/2000JD000284, 2002.
Castanho, A. D. A., Coe, M. T., Costa, M. H., Malhi, Y., Galbraith, D., and Quesada, C. A.: Improving simulated Amazon forest biomass and productivity by including spatial variation in biophysical parameters, Biogeosciences, 10, 2255–2272, https://doi.org/10.5194/bg-10-2255-2013, 2013.
Choat, B., Jansen, S., Brodribb, T. J., Cochard, H., Delzon, S., Bhaskar,
R., Bucci, S. J., Feild, T. S., Gleason, S. M., Hacke, U. G., Jacobsen, A.
L., Lens, F., Maherali, H., Martinez-Vilalta, J., Mayr, S., Mencuccini, M.,
Mitchell, P. J., Nardini, A., Pittermann, J., Pratt, R. B., Sperry, J. S.,
Westoby, M., Wright, I. J., and Zanne, A. E.: Global convergence in the
vulnerability of forests to drought, Nature, 491, 752–755, 2012.
Cleveland, C. C., Townsend, A. R., Taylor, P., Alvarez-Clare, S.,
Bustamante, M. M. C., Chuyong, G., Dobrowski, S. Z., Grierson, P., Harms, K.
E., and Houlton, B. Z.: Relationships among net primary productivity,
nutrients and climate in tropical rain forest: a pan-tropical analysis,
Ecol. Lett., 14, 939–947, 2011.
Corlett, R. T.: The Impacts of Droughts in Tropical Forests, Trends Plant
Sci., 21, 584–593, 2016.
da Costa, A. C. L., Rowland, L., Oliveira, R. S., Oliveira, A. A. R., Binks,
O. J., Salmon, Y., Vasconcelos, S. S., Junior, J. A. S., Ferreira, L. V.,
Poyatos, R., Mencuccini, M., and Meir, P.: Stand dynamics modulate water
cycling and mortality risk in droughted tropical forest, Glob. Change Biol.,
24, 249–258, 2018.
Dee, D. P., Uppala, S. M., Simmons, A. J., Berrisford, P., Poli, P.,
Kobayashi, S., Andrae, U., Balmaseda, M. A., Balsamo, G., and Bauer, P.: The
ERA-Interim reanalysis: Configuration and performance of the data
assimilation system, Q. J. Roy. Meteor. Soc., 137, 553–597, 2011.
Dietze, M. C., Sala, A., Carbone, M. S., Czimczik, C. I., Mantooth, J. A.,
Richardson, A. D., and Vargas, R.: Nonstructural carbon in woody plants,
Annu. Rev. Plant Biol., 65, 667–687, 2014.
Dobbertin, M., Eilmann, B., Bleuler, P., Giuggiola, A., Graf Pannatier, E.,
Landolt, W., Schleppi, P., and Rigling, A.: Effect of irrigation on needle
morphology, shoot and stem growth in a drought-exposed Pinus sylvestris
forest, Tree Physiol., 30, 346–360, 2010.
Doughty, C. E., Metcalfe, D. B., Girardin, C. A., Amezquita, F. F., Cabrera,
D. G., Huasco, W. H., Silva-Espejo, J. E., Araujo-Murakami, A., da Costa, M.
C., Rocha, W., Feldpausch, T. R., Mendoza, A. L., da Costa, A. C., Meir, P.,
Phillips, O. L., and Malhi, Y.: Drought impact on forest carbon dynamics and
fluxes in Amazonia, Nature, 519, 78–82, https://doi.org/10.1038/nature14213, 2015.
Drusch, M., Moreno, J., Del Bello, U., Franco, R., Goulas, Y., Huth, A.,
Kraft, S., Middleton, E. M., Miglietta, F., and Mohammed, G.: The
FLuorescence EXplorer Mission Concept – ESA's Earth Explorer 8, IEEE T.
Geosci. Remote, 55, 1273–1284, 2017.
Duffy, P. B., Brando, P., Asner, G. P., and Field, C. B.: Projections of
future meteorological drought and wet periods in the Amazon, P. Natl. Acad.
Sci. USA, 112, 13172–13177, 2015.
Eller, C. B., Rowland, L., Oliveira, R. S., Bittencourt, P. R. L., Barros,
F. V., da Costa, A. C. L., Meir, P., Friend, A. D., Mencuccini, M., Sitch,
S., and Cox, P.: Modelling tropical forest responses to drought and El Nino
with a stomatal optimization model based on xylem hydraulics, Philos. T. R.
Soc. B., 373, 20170315, https://doi.org/10.1098/rstb.2017.0315, 2018.
Fauset, S., Baker, T. R., Lewis, S. L., Feldpausch, T. R., Affum-Baffoe, K.,
Foli, E. G., Hamer, K. C., and Swaine, M. D.: Drought-induced shifts in the
floristic and functional composition of tropical forests in Ghana, Ecol.
Lett., 15, 1120–1129, 2012.
Fisher, R. A., Williams, M., Do, V., Lobo, R., Da Costa, A. L., and Meir,
P.: Evidence from Amazonian forests is consistent with isohydric control of
leaf water potential, Plant Cell Environ., 29, 151–165, 2006.
Fisher, R. A., Williams, M., Da Costa, A. L., Malhi, Y., Da Costa, R. F.,
Almeida, S., and Meir, P.: The response of an Eastern Amazonian rain forest
to drought stress: results and modelling analyses from a throughfall
exclusion experiment, Glob. Change Biol., 13, 2361–2378, 2007.
Fisher, R. A., Koven, C. D., Anderegg, W. R. L., Christoffersen, B. O., Dietze, M. C., Farrior, C. E., Holm, J. A., Hurtt, G. C., Knox, R. G., Lawrence, P. J., Lichstein, J. W., Longo, M., Matheny, A. M., Medvigy, D., Muller-Landau, H. C., Powell, T. L., Serbin, S. P., Sato, H., Shuman, J. K., Smith, B., Trugman, A. T., Viskari, T., Verbeeck, H., Weng, E., Xu, C., Xu, X., Zhang, T., and Moorcroft, P. R.: Vegetation demographics in Earth System Models: A review of progress and priorities, Glob. Change Biol., 24, 35–54, 2018.
Flack-Prain, S., Meir, P., Malhi, Y., Smallman, T., and Williams, M.: The importance of physiological, structural and trait responses to drought stress in driving spatial and temporal variation in GPP across Amazon forests, University of Edinburgh, School of Geosciences, https://doi.org/10.7488/ds/2710, 2019.
Fyllas, N. M., Patiño, S., Baker, T. R., Bielefeld Nardoto, G., Martinelli, L. A., Quesada, C. A., Paiva, R., Schwarz, M., Horna, V., Mercado, L. M., Santos, A., Arroyo, L., Jiménez, E. M., Luizão, F. J., Neill, D. A., Silva, N., Prieto, A., Rudas, A., Silviera, M., Vieira, I. C. G., Lopez-Gonzalez, G., Malhi, Y., Phillips, O. L., and Lloyd, J.: Basin-wide variations in foliar properties of Amazonian forest: phylogeny, soils and climate, Biogeosciences, 6, 2677–2708, https://doi.org/10.5194/bg-6-2677-2009, 2009.
Fyllas, N. M., Bentley, L. P., Shenkin, A., Asner, G. P., Atkin, O. K.,
Diaz, S., Enquist, B. J., Farfan-Rios, W., Gloor, E., Guerrieri, R., Huasco,
W. H., Ishida, Y., Martin, R. E., Meir, P., Phillips, O., Salinas, N.,
Silman, M., Weerasinghe, L. K., Zaragoza-Castells, J., and Malhi, Y.: Solar
radiation and functional traits explain the decline of forest primary
productivity along a tropical elevation gradient, Ecol. Lett., 20, 730–740,
2017.
Galbraith, D., Levy, P. E., Sitch, S., Huntingford, C., Cox, P., Williams,
M., and Meir, P.: Multiple mechanisms of Amazonian forest biomass losses in
three dynamic global vegetation models under climate change, New Phytol.,
187, 647–665, 2010.
Goulden, M. L., Miller, S. D., da Rocha, H. R., Menton, M. C., de Freitas,
H. C., Figueira, A. M. E. S., and de Sousa, C. A. D.: Diel and seasonal
patterns of tropical forest CO2 exchange, Ecol. Appl., 14, S42–S54,
2004.
Green, J. K., Seneviratne, S. I., Berg, A. M., Findell, K. L., Hagemann, S.,
Lawrence, D. M., and Gentine, P.: Large influence of soil moisture on
long-term terrestrial carbon uptake, Nature, 565, 476–479, 2019.
Grier, C. C. and Running, S. W.: Leaf Area of Mature Northwestern Coniferous
Forests – Relation to Site Water-Balance, Ecology, 58, 893–899, 1977.
Guan, K., Pan, M., Li, H., Wolf, A., Wu, J., Medvigy, D., Caylor, K. K., Sheffield, J., Wood, E. F., Malhi, Y., and Liang, M.: Photosynthetic seasonality of global tropical forests constrained by hydroclimate, Nat. Geosci., 8, 284–289, 2015.
Hutyra, L. R., Munger, J. W., Saleska, S. R., Gottlieb, E., Daube, B. C.,
Dunn, A. L., Amaral, D. F., De Camargo, P. B., and Wofsy, S. C.: Seasonal
controls on the exchange of carbon and water in an Amazonian rain forest,
J. Geophys. Res.-Biogeo., 112, G03008, https://doi.org/10.1029/2006JG000365, 2007.
Ichii, K., Hashimoto, H., White, M. A., Potters, C., Hutyra, L. R., Huete,
A. R., Myneni, R. B., and Nemanis, R. R.: Constraining rooting depths in
tropical rainforests using satellite data and ecosystem modeling for
accurate simulation of gross primary production seasonality, Glob. Change
Biol., 13, 67–77, 2007.
Iio, A., Hikosaka, K., Anten, N. P. R., Nakagawa, Y., and Ito, A.: Global
dependence of field-observed leaf area index in woody species on climate: a
systematic review, Global Ecol. Biogeogr., 23, 274–285, 2014.
Joetzjer, E., Douville, H., Delire, C., and Ciais, P.: Present-day and
future Amazonian precipitation in global climate models: CMIP5 versus CMIP3,
Clim. Dynam., 41, 2921–2936, 2013.
Jonckheere, I., Fleck, S., Nackaerts, K., Muys, B., Coppin, P., Weiss, M.,
and Baret, F.: Review of methods for in situ leaf area index determination –
Part I, Theories, sensors and hemispherical photography, Agr. Forest
Meteorol., 121, 19–35, 2004.
Lee, J. E., Frankenberg, C., van der Tol, C., Berry, J. A., Guanter, L.,
Boyce, C. K., Fisher, J. B., Morrow, E., Worden, J. R., Asefi, S., Badgley,
G., and Saatchi, S.: Forest productivity and water stress in Amazonia:
observations from GOSAT chlorophyll fluorescence, P. R. Soc. B., 280,
20130171, https://doi.org/10.1098/rspb.2013.0171, 2013.
Liu, J., Bowman, K. W., Schimel, D. S., Parazoo, N. C., Jiang, Z., Lee, M.,
Bloom, A. A., Wunch, D., Frankenberg, C., and Sun, Y.: Contrasting carbon
cycle responses of the tropical continents to the 2015–2016 El Niño,
Science, 358, eaam5690, https://doi.org/10.1126/science.aam5690, 2017.
López-Blanco, E., Lund, M., Williams, M., Tamstorf, M. P., Westergaard-Nielsen, A., Exbrayat, J.-F., Hansen, B. U., and Christensen, T. R.: Exchange of CO2 in Arctic tundra: impacts of meteorological variations and biological disturbance, Biogeosciences, 14, 4467–4483, https://doi.org/10.5194/bg-14-4467-2017, 2017.
Malhi, Y., Roberts, J. T., Betts, R. A., Killeen, T. J., Li, W., and Nobre,
C. A.: Climate change, deforestation, and the fate of the Amazon, Science,
319, 169–172, 2008.
Malhi, Y., Aragao, L. E., Galbraith, D., Huntingford, C., Fisher, R.,
Zelazowski, P., Sitch, S., McSweeney, C., and Meir, P.: Exploring the
likelihood and mechanism of a climate-change-induced dieback of the Amazon
rainforest, P. Natl. Acad. Sci. USA, 106, 20610–20615, 2009.
Malhi, Y., Doughty, C. E., Goldsmith, G. R., Metcalfe, D. B., Girardin, C.
A. J., Marthews, T. R., del Aguila-Pasquel, J., Aragao, L. E. O. C.,
Araujo-Murakami, A., Brando, P., da Costa, A. C. L., Silva-Espejo, J. E.,
Amezquita, F. F., Galbraith, D. R., Quesada, C. A., Rocha, W.,
Salinas-Revilla, N., Silverio, D., Meir, P., and Phillips, O. L.: The
linkages between photosynthesis, productivity, growth and biomass in lowland
Amazonian forests, Glob. Change Biol., 21, 2283–2295, 2015.
McMurtrie, R. E. and Dewar, R. C.: Leaf-trait variation explained by the
hypothesis that plants maximize their canopy carbon export over the lifespan
of leaves, Tree Physiol., 31, 1007–1023, 2011.
McWilliam, A. L., Roberts, J. M., Cabral, O. M. R., Leitao, M., De Costa, A.
C. L., Maitelli, G. T., and Zamparoni, C.: Leaf area index and above-ground
biomass of terra firme rain forest and adjacent clearings in Amazonia,
Funct. Ecol., 7, 310–317, 1993.
Meir, P. and Woodward, F. I.: Amazonian rain forests and drought: response
and vulnerability, New Phytol., 187, 553–557, 2010.
Meir, P., Metcalfe, D. B., Costa, A. C., and Fisher, R. A.: The fate of
assimilated carbon during drought: impacts on respiration in Amazon
rainforests, Philos. T. R. Soc. B, 363, 1849–1855, 2008.
Meir, P., Brando, P. M., Nepstad, D., Vasconcelos, S., Costa, A. C. L.,
Davidson, E., Almeida, S., Fisher, R. A., Sotta, E. D., and Zarin, D.: The
effects of drought on Amazonian rain forests, Amazonia and Global Change,
186, 429–449, 2009.
Meir, P., Mencuccini, M., and Dewar, R. C.: Drought-related tree mortality:
addressing the gaps in understanding and prediction, New Phytol., 207,
28–33, 2015a.
Meir, P., Wood, T. E., Galbraith, D. R., Brando, P. M., Da Costa, A. C.,
Rowland, L., and Ferreira, L. V.: Threshold Responses to Soil Moisture
Deficit by Trees and Soil in Tropical Rain Forests: Insights from Field
Experiments, Bioscience, 65, 882–892, 2015b.
Mercado, L. M., Patino, S., Domingues, T. F., Fyllas, N. M., Weedon, G. P.,
Sitch, S., Quesada, C. A., Phillips, O. L., Aragao, L. E., Malhi, Y.,
Dolman, A. J., Restrepo-Coupe, N., Saleska, S. R., Baker, T. R., Almeida,
S., Higuchi, N., and Lloyd, J.: Variations in Amazon forest productivity
correlated with foliar nutrients and modelled rates of photosynthetic carbon
supply, Philos. T. R. Soc. B, 366, 3316–3329, 2011.
Metcalfe, D. B., Meir, P., Aragao, L., Malhi, Y., Da Costa, A. C. L., Braga,
A., Gonçalves, P. H. L., de Athaydes, J., De Almeida, S. S., and
Williams, M.: Factors controlling spatio-temporal variation in carbon
dioxide efflux from surface litter, roots, and soil organic matter at four
rain forest sites in the eastern Amazon, J. Geophys. Res.-Biogeo., 112, G04001, https://doi.org/10.1029/2007JG000443, 2007.
Metcalfe, D. B., Meir, P., Aragao, L. E. O. C., da Costa, A. C. L., Braga,
A. P., Goncalves, P. H. L., Silva, J. D., de Almeida, S. S., Dawson, L. A.,
Malhi, Y., and Williams, M.: The effects of water availability on root
growth and morphology in an Amazon rainforest, Plant Soil, 311, 189–199,
2008.
Moore, C. E., Beringer, J., Donohue, R. J., Evans, B., Exbrayat, J. F.,
Hutley, L. B., and Tapper, N. J.: Seasonal, interannual and decadal drivers
of tree and grass productivity in an Australian tropical savanna, Glob.
Change Biol., 24, 2530–2544, 2018.
Morton, D. C.: FOREST CARBON FLUXES A satellite perspective, Nat. Clim.
Change, 6, 346–348, 2016.
Myneni, R. B., Yang, W., Nemani, R. R., Huete, A. R., Dickinson, R. E.,
Knyazikhin, Y., Didan, K., Fu, R., Negron Juarez, R. I., Saatchi, S. S.,
Hashimoto, H., Ichii, K., Shabanov, N. V., Tan, B., Ratana, P., Privette, J.
L., Morisette, J. T., Vermote, E. F., Roy, D. P., Wolfe, R. E., Friedl, M.
A., Running, S. W., Votava, P., El-Saleous, N., Devadiga, S., Su, Y., and
Salomonson, V. V.: Large seasonal swings in leaf area of Amazon rainforests,
P. Natl. Acad. Sci. USA, 104, 4820–4823, 2007.
Nepstad, D. C., Decarvalho, C. R., Davidson, E. A., Jipp, P. H., Lefebvre,
P. A., Negreiros, G. H., Dasilva, E. D., Stone, T. A., Trumbore, S. E., and
Vieira, S.: The Role of Deep Roots in the Hydrological and Carbon Cycles of
Amazonian Forests and Pastures, Nature, 372, 666–669, 1994.
Nepstad, D. C., Moutinho, P., Dias, M. B., Davidson, E., Cardinot, G.,
Markewitz, D., Figueiredo, R., Vianna, N., Chambers, J., Ray, D.,
Guerreiros, J. B., Lefebvre, P., Sternberg, L., Moreira, M., Barros, L.,
Ishida, F. Y., Tohlver, I., Belk, E., Kalif, K., and Schwalbe, K.: The
effects of partial throughfall exclusion on canopy processes, aboveground
production, and biogeochemistry of an Amazon forest, J. Geophys. Res.-Atmos,
107, D208085, https://doi.org/10.1029/2001JD000360, 2002.
Onoda, Y., Wright, I. J., Evans, J. R., Hikosaka, K., Kitajima, K.,
Niinemets, Ü., Poorter, H., Tosens, T., and Westoby, M.: Physiological
and structural tradeoffs underlying the leaf economics spectrum, New
Phytol., 214, 1447–1463, 2017.
Osnas, J. L., Lichstein, J. W., Reich, P. B., and Pacala, S. W.: Global leaf
trait relationships: mass, area, and the leaf economics spectrum, Science,
340, 741–744, 2013.
Pedregosa, F., Varoquaux, G., Gramfort, A., Michel, V., Thirion, B., Grisel,
O., Blondel, M., Prettenhofer, P., Weiss, R., Dubourg, V., Vanderplas, J.,
Passos, A., Cournapeau, D., Brucher, M., Perrot, M., and Duchesnay, E.:
Scikit-learn: Machine Learning in Python, J. Mach. Learn Res., 12,
2825–2830, 2011.
Pettorelli, N., Buhne, H. S. T., Tulloch, A., Dubois, G., Macinnis-Ng, C.,
Queiros, A. M., Keith, D. A., Wegmann, M., Schrodt, F., Stellmes, M.,
Sonnenschein, R., Geller, G. N., Roy, S., Somers, B., Murray, N., Bland, L.,
Geijzendorffer, I., Kerr, J. T., Broszeit, S., Leitao, P. J., Duncan, C., El
Serafy, G., He, K. S., Blanchard, J. L., Lucas, R., Mairota, P., Webb, T.
J., and Nicholson, E.: Satellite remote sensing of ecosystem functions:
opportunities, challenges and way forward, Remote Sens. Ecol.
Conserv., 4, 71–93, 2018.
Poorter, L. and Bongers, F.: Leaf traits are good predictors of plant
performance across 53 rain forest species, Ecology, 87, 1733–1743, 2006.
Powell, T. L., Galbraith, D. R., Christoffersen, B. O., Harper, A.,
Imbuzeiro, H. M., Rowland, L., Almeida, S., Brando, P. M., da Costa, A. C.,
Costa, M. H., Levine, N. M., Malhi, Y., Saleska, S. R., Sotta, E., Williams,
M., Meir, P., and Moorcroft, P. R.: Confronting model predictions of carbon
fluxes with measurements of Amazon forests subjected to experimental
drought, New Phytol., 200, 350–365, 2013.
Quesada, C. A., Phillips, O. L., Schwarz, M., Czimczik, C. I., Baker, T. R., Patiño, S., Fyllas, N. M., Hodnett, M. G., Herrera, R., Almeida, S., Alvarez Dávila, E., Arneth, A., Arroyo, L., Chao, K. J., Dezzeo, N., Erwin, T., di Fiore, A., Higuchi, N., Honorio Coronado, E., Jimenez, E. M., Killeen, T., Lezama, A. T., Lloyd, G., López-González, G., Luizão, F. J., Malhi, Y., Monteagudo, A., Neill, D. A., Núñez Vargas, P., Paiva, R., Peacock, J., Peñuela, M. C., Peña Cruz, A., Pitman, N., Priante Filho, N., Prieto, A., Ramírez, H., Rudas, A., Salomão, R., Santos, A. J. B., Schmerler, J., Silva, N., Silveira, M., Vásquez, R., Vieira, I., Terborgh, J., and Lloyd, J.: Basin-wide variations in Amazon forest structure and function are mediated by both soils and climate, Biogeosciences, 9, 2203–2246, https://doi.org/10.5194/bg-9-2203-2012, 2012.
Reich, P. B., Uhl, C., Walters, M. B., and Ellsworth, D. S.: Leaf lifespan
as a determinant of leaf structure and function among 23 Amazonian tree
species, Oecologia, 86, 16–24, 1991.
Reich, P. B., Tjoelker, M. G., Pregitzer, K. S., Wright, I. J., Oleksyn, J.,
and Machado, J. L.: Scaling of respiration to nitrogen in leaves, stems and
roots of higher land plants, Ecol. Lett., 11, 793–801, 2008.
Restrepo-Coupe, N., da Rocha, H. R., Hutyra, L. R., da Araujo, A. C., Borma,
L. S., Christoffersen, B., Cabral, O. M. R., de Camargo, P. B., Cardoso, F.
L., and da Costa, A. C. L.: What drives the seasonality of photosynthesis
across the Amazon basin? A cross-site analysis of eddy flux tower
measurements from the Brasil flux network, Agr. Forest Meteorol., 182,
128–144, 2013.
Restrepo-Coupe, N., Levine, N. M., Christoffersen, B. O., Albert, L. P., Wu,
J., Costa, M. H., Galbraith, D., Imbuzeiro, H., Martins, G., and Araujo, A.
C.: Do dynamic global vegetation models capture the seasonality of carbon
fluxes in the Amazon basin? A data-model intercomparison, Glob. Change
Biol., 23, 191–208, 2017.
Richardson, A. D., Hollinger, D. Y., Aber, J. D., Ollinger, S. V., and
Braswell, B. H.: Environmental variation is directly responsible for
short-but not long-term variation in forest-atmosphere carbon exchange,
Glob. Change Biol., 13, 788–803, 2007.
Rowland, L., Da Costa, A. C. L., Galbraith, D. R., Oliveira, R. S., Binks,
O. J., Oliveira, A. A. R., Pullen, A. M., Doughty, C. E., Metcalfe, D. B.,
and Vasconcelos, S. S.: Death from drought in tropical forests is triggered
by hydraulics not carbon starvation, Nature, 528, 119–122, 2015a.
Rowland, L., Harper, A., Christoffersen, B. O., Galbraith, D. R., Imbuzeiro, H. M. A., Powell, T. L., Doughty, C., Levine, N. M., Malhi, Y., Saleska, S. R., Moorcroft, P. R., Meir, P., and Williams, M.: Modelling climate change responses in tropical forests: similar productivity estimates across five models, but different mechanisms and responses, Geosci. Model Dev., 8, 1097–1110, https://doi.org/10.5194/gmd-8-1097-2015, 2015b.
Rowland, L., da Costa, A. C. L., Oliveira, A. A. R., Almeida, S. S.,
Ferreira, L. V., Malhi, Y., Metcalfe, D. B., Mencuccini, M., Grace, J., and
Meir, P.: Shock and stabilisation following long-term drought in tropical
forest from 15 years of litterfall dynamics, J. Ecol., 106, 1673–1682, 2018.
Sakschewski, B., von Bloh, W., Boit, A., Poorter, L., Pena-Claros, M.,
Heinke, J., Joshi, J., and Thonicke, K.: Resilience of Amazon forests
emerges from plant trait diversity, Nat. Clim. Change, 6, 1032–1036, 2016.
Saleska, S. R., Miller, S. D., Matross, D. M., Goulden, M. L., Wofsy, S. C.,
da Rocha, H. R., de Camargo, P. B., Crill, P., Daube, B. C., de Freitas, H.
C., Hutyra, L., Keller, M., Kirchhoff, V., Menton, M., Munger, J. W., Pyle,
E. H., Rice, A. H., and Silva, H.: Carbon in Amazon forests: unexpected
seasonal fluxes and disturbance-induced losses, Science, 302, 1554–1557,
2003.
Saleska, S. R., Didan, K., Huete, A. R., and da Rocha, H. R.: Amazon forests
green-up during 2005 drought, Science, 318, p. 612, 2007.
Samanta, A., Ganguly, S., Hashimoto, H., Devadiga, S., Vermote, E.,
Knyazikhin, Y., Nemani, R. R., and Myneni, R. B.: Amazon forests did not
green-up during the 2005 drought, Geophys. Res. Lett., 37, L05401, https://doi.org/10.1029/2009GL042154, 2010.
Santiago, L. S., Goldstein, G., Meinzer, F. C., Fisher, J. B., Machado, K.,
Woodruff, D., and Jones, T.: Leaf photosynthetic traits scale with hydraulic
conductivity and wood density in Panamanian forest canopy trees, Oecologia,
140, 543–550, 2004.
Schleppi, P., Thimonier, A., and Walthert, L.: Estimating leaf area index of
mature temperate forests using regressions on site and vegetation data,
Forest Ecol. Manag., 261, 601–610, 2011.
Schuldt, B., Leuschner, C., Horna, V., Moser, G., Köhler, M., van Straaten, O., and Barus, H.: Change in hydraulic properties and leaf traits in a tall rainforest tree species subjected to long-term throughfall exclusion in the perhumid tropics, Biogeosciences, 8, 2179–2194, https://doi.org/10.5194/bg-8-2179-2011, 2011.
Smallman, T. L., Moncrieff, J. B., and Williams, M.: WRFv3.2-SPAv2: development and validation of a coupled ecosystem–atmosphere model, scaling from surface fluxes of CO2 and energy to atmospheric profiles, Geosci. Model Dev., 6, 1079–1093, https://doi.org/10.5194/gmd-6-1079-2013, 2013.
Sperry, J. S., Hacke, U. G., Oren, R., and Comstock, J. P.: Water deficits
and hydraulic limits to leaf water supply, Plant Cell Environ., 25, 251–263,
2002.
Sus, O., Williams, M., Bernhofer, C., Béziat, P., Buchmann, N., Ceschia, E., Doherty, R., Eugster, W., Grünwald, T., Kutsch, W., and Smith, P.: A linked carbon cycle and crop developmental model: Description and evaluation against measurements of carbon fluxes and carbon stocks at several European agricultural sites, Agr. Ecosys. Environ., 139, 402–418, 2010.
van de Weg, M. J., Shaver, G. R., and Salmon, V. G.: Contrasting effects of
long term versus short-term nitrogen addition on photosynthesis and
respiration in the Arctic, Plant Ecol., 214, 1273–1286, 2013.
Von Randow, C., Zeri, M., Restrepo-Coupe, N., Muza, M. N., de Gonçalves,
L. G. G., Costa, M. H., Araujo, A. C., Manzi, A. O., da Rocha, H. R., and
Saleska, S. R.: Inter-annual variability of carbon and water fluxes in
Amazonian forest, Cerrado and pasture sites, as simulated by terrestrial
biosphere models, Agr. Forest Meteorol., 182, 145–155, 2013.
Wagner, F. H., Herault, B., Rossi, V., Hilker, T., Maeda, E. E., Sanchez,
A., Lyapustin, A. I., Galvao, L. S., Wang, Y., and Aragao, L.: Climate
drivers of the Amazon forest greening, PLoS One, 12, e0180932, https://doi.org/10.1371/journal.pone.0180932, 2017.
Walker, A. P., Beckerman, A. P., Gu, L., Kattge, J., Cernusak, L. A.,
Domingues, T. F., Scales, J. C., Wohlfahrt, G., Wullschleger, S. D., and
Woodward, F. I.: The relationship of leaf photosynthetic traits – Vcmax and
Jmax – to leaf nitrogen, leaf phosphorus, and specific leaf area: a
meta-analysis and modeling study, Ecol. Evol., 4, 3218–3235, 2014.
Wang, G., Alo, C., Mei, R., and Sun, S.: Droughts, hydraulic redistribution,
and their impact on vegetation composition in the Amazon forest, Plant
Ecol., 212, 663–673, 2011.
Waring, R. H. and Schlesinger, W. H.: Forest ecosystems. Concepts and
management, Academic Press, 7–37, 1985.
Weiss, M., Baret, F., Smith, G. J., Jonckheere, I., and Coppin, P.: Review
of methods for in situ leaf area index (LAI) determination Part II,
Estimation of LAI, errors and sampling, Agr. Forest Meteorol., 121, 37–53,
2004.
Williams, M., Rastetter, E. B., Fernandes, D. N., Goulden, M. L., Wofsy, S.
C., Shaver, G. R., Melillo, J. M., Munger, J. W., Fan, S. M., and
Nadelhoffer, K. J.: Modelling the soil-plant-atmosphere continuum in a
Quercus–Acer stand at Harvard Forest: the regulation of stomatal
conductance by light, nitrogen and soil ∕ plant hydraulic properties, Plant
Cell Environ., 19, 911–927, 1996.
Williams, M., Malhi, Y., Nobre, A. D., Rastetter, E. B., Grace, J., and
Pereira, M. G. P.: Seasonal variation in net carbon exchange and
evapotranspiration in a Brazilian rain forest: a modelling analysis, Plant
Cell Environ., 21, 953–968, 1998.
Wright, I. J., Reich, P. B., Westoby, M., Ackerly, D. D., Baruch, Z.,
Bongers, F., Cavender-Bares, J., Chapin, T., Cornelissen, J. H., Diemer, M.,
Flexas, J., Garnier, E., Groom, P. K., Gulias, J., Hikosaka, K., Lamont, B.
B., Lee, T., Lee, W., Lusk, C., Midgley, J. J., Navas, M. L., Niinemets, U.,
Oleksyn, J., Osada, N., Poorter, H., Poot, P., Prior, L., Pyankov, V. I.,
Roumet, C., Thomas, S. C., Tjoelker, M. G., Veneklaas, E. J., and Villar,
R.: The worldwide leaf economics spectrum, Nature, 428, 821–827, 2004.
Wu, J., Albert, L. P., Lopes, A. P., Restrepo-Coupe, N., Hayek, M.,
Wiedemann, K. T., Guan, K., Stark, S. C., Christoffersen, B., Prohaska, N.,
Tavares, J. V., Marostica, S., Kobayashi, H., Ferreira, M. L., Campos, K.
S., da Silva, R., Brando, P. M., Dye, D. G., Huxman, T. E., Huete, A. R.,
Nelson, B. W., and Saleska, S. R.: Leaf development and demography explain
photosynthetic seasonality in Amazon evergreen forests, Science, 351,
972–976, 2016.
Wu, J., Guan, K. Y., Hayek, M., Restrepo-Coupe, N., Wiedemann, K. T., Xu, X.
T., Wehr, R., Christoffersen, B. O., Miao, G. F., da Silva, R., de Araujo,
A. C., Oliviera, R. C., Camargo, P. B., Monson, R. K., Huete, A. R., and
Saleska, S. R.: Partitioning controls on Amazon forest photosynthesis
between environmental and biotic factors at hourly to interannual
timescales, Glob. Change Biol., 23, 1240–1257, 2017.
Zhang, K., Castanho, A. D. D., Galbraith, D. R., Moghim, S., Levine, N. M.,
Bras, R. L., Coe, M. T., Costa, M. H., Malhi, Y., Longo, M., Knox, R. G.,
McKnight, S., Wang, J. F., and Moorcroft, P. R.: The fate of Amazonian
ecosystems over the coming century arising from changes in climate,
atmospheric CO2, and land use, Glob. Change Biol., 21, 2569–2587, 2015.
Short summary
Across the Amazon rainforest, trees take in carbon through photosynthesis. However, photosynthesis across the basin is threatened by predicted shifts in rainfall patterns. To unpick how changes in rainfall affect photosynthesis, we use a model which combines climate data with our knowledge of photosynthesis and other plant processes. We find that stomatal constraints are less important, and instead shifts in leaf surface area and leaf properties drive changes in photosynthesis with rainfall.
Across the Amazon rainforest, trees take in carbon through photosynthesis. However,...
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