Articles | Volume 7, issue 9
https://doi.org/10.5194/bg-7-2695-2010
© Author(s) 2010. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/bg-7-2695-2010
© Author(s) 2010. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
13 Sep 2010
Biogeochemical controls and isotopic signatures of nitrous oxide production by a marine ammonia-oxidizing bacterium
C. H. Frame
Joint Program in Chemical Oceanography, MIT Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
K. L. Casciotti
Marine Chemistry and Geochemistry, Woods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA
Related subject area
Biogeochemistry: Greenhouse Gases
Influence of wind strength and direction on diffusive methane fluxes and atmospheric methane concentrations above the North Sea
Using eddy covariance observations to determine the carbon sequestration characteristics of subalpine forests in the Qinghai–Tibet Plateau
Isotopomer labeling and oxygen dependence of hybrid nitrous oxide production
The emission of CO from tropical rainforest soils
Modelling CO2 and N2O emissions from soils in silvopastoral systems of the West African Sahelian band
A case study on topsoil removal and rewetting for paludiculture: effect on biogeochemistry and greenhouse gas emissions from Typha latifolia, Typha angustifolia, and Azolla filiculoides
Assessing improvements in global ocean pCO2 machine learning reconstructions with Southern Ocean autonomous sampling
Timescale dependence of airborne fraction and underlying climate–carbon-cycle feedbacks for weak perturbations in CMIP5 models
Technical note: Preventing CO2 overestimation from mercuric or copper(II) chloride preservation of dissolved greenhouse gases in freshwater samples
Exploring temporal and spatial variation of nitrous oxide flux using several years of peatland forest automatic chamber data
Diurnal versus spatial variability of greenhouse gas emissions from an anthropogenically modified lowland river in Germany
Regional assessment and uncertainty analysis of carbon and nitrogen balances at cropland scale using the ecosystem model LandscapeDNDC
Physicochemical Perturbation Increases Nitrous Oxide Production in Soils and Sediments
Resolving heterogeneous fluxes from tundra halves the growing season carbon budget
Interannual and seasonal variability of the air-sea CO2 exchange at Utö in the coastal region of the Baltic Sea
Seasonal dynamics and regional distribution patterns of CO2 and CH4 in the north-eastern Baltic Sea
Carbon degradation and mobilisation potentials of thawing permafrost peatlands in Northern Norway
Lawns and meadows in urban green space – a comparison from perspectives of greenhouse gases, drought resilience and plant functional types
Using automated transparent chambers to quantify CO2 emissions and potential emission reduction by water infiltration systems in drained coastal peatlands in the Netherlands
Large contribution of soil N2O emission to the global warming potential of a large-scale oil palm plantation despite changing from conventional to reduced management practices
Identifying landscape hot and cold spots of soil greenhouse gas fluxes by combining field measurements and remote sensing data
Enhanced Southern Ocean CO2 outgassing as a result of stronger and poleward shifted southern hemispheric westerlies
Spatial and temporal variability of methane emissions and environmental conditions in a hyper-eutrophic fishpond
Optical and radar Earth observation data for upscaling methane emissions linked to permafrost degradation in sub-Arctic peatlands in northern Sweden
Herbivore–shrub interactions influence ecosystem respiration and biogenic volatile organic compound composition in the subarctic
Methane emissions due to reservoir flushing: a significant emission pathway?
Carbon dioxide and methane fluxes from mounds of African fungus-growing termites
Diel and seasonal methane dynamics in the shallow and turbulent Wadden Sea
Technical note: Skirt chamber – an open dynamic method for the rapid and minimally intrusive measurement of greenhouse gas emissions from peatlands
Seasonal variability of nitrous oxide concentrations and emissions in a temperate estuary
Reviews and syntheses: Recent advances in microwave remote sensing in support of terrestrial carbon cycle science in Arctic–boreal regions
Simulated methane emissions from Arctic ponds are highly sensitive to warming
Water-table-driven greenhouse gas emission estimates guide peatland restoration at national scale
Relationships between greenhouse gas production and landscape position during short-term permafrost thaw under anaerobic conditions in the Lena Delta
Carbon emissions and radiative forcings from tundra wildfires in the Yukon–Kuskokwim River Delta, Alaska
Carbon monoxide (CO) cycling in the Fram Strait, Arctic Ocean
Post-flooding disturbance recovery promotes carbon capture in riparian zones
Meteorological responses of carbon dioxide and methane fluxes in the terrestrial and aquatic ecosystems of a subarctic landscape
Carbon emission and export from the Ket River, western Siberia
Evaluation of wetland CH4 in the Joint UK Land Environment Simulator (JULES) land surface model using satellite observations
Greenhouse gas fluxes in mangrove forest soil in an Amazon estuary
Temporal patterns and drivers of CO2 emission from dry sediments in a groyne field of a large river
Effects of water table level and nitrogen deposition on methane and nitrous oxide emissions in an alpine peatland
Highest methane concentrations in an Arctic river linked to local terrestrial inputs
Seasonal study of the small-scale variability in dissolved methane in the western Kiel Bight (Baltic Sea) during the European heatwave in 2018
Trace gas fluxes from tidal salt marsh soils: implications for carbon–sulfur biogeochemistry
Spatial and temporal variation in δ13C values of methane emitted from a hemiboreal mire: methanogenesis, methanotrophy, and hysteresis
Intercomparison of methods to estimate gross primary production based on CO2 and COS flux measurements
Lateral carbon export has low impact on the net ecosystem carbon balance of a polygonal tundra catchment
The effect of static chamber base on N2O flux in drip irrigation
Ingeborg Bussmann, Eric P. Achterberg, Holger Brix, Nicolas Brüggemann, Götz Flöser, Claudia Schütze, and Philipp Fischer
Biogeosciences, 21, 3819–3838, https://doi.org/10.5194/bg-21-3819-2024, https://doi.org/10.5194/bg-21-3819-2024, 2024
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Methane (CH4) is an important greenhouse gas and contributes to climate warming. However, the input of CH4 from coastal areas to the atmosphere is not well defined. Dissolved and atmospheric CH4 was determined at high spatial resolution in or above the North Sea. The atmospheric CH4 concentration was mainly influenced by wind direction. With our detailed study on the spatial distribution of CH4 fluxes we were able to provide a detailed and more realistic estimation of coastal CH4 fluxes.
Niu Zhu, Jinniu Wang, Dongliang Luo, Xufeng Wang, Cheng Shen, and Ning Wu
Biogeosciences, 21, 3509–3522, https://doi.org/10.5194/bg-21-3509-2024, https://doi.org/10.5194/bg-21-3509-2024, 2024
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Our study delves into the vital role of subalpine forests in the Qinghai–Tibet Plateau as carbon sinks in the context of climate change. Utilizing advanced eddy covariance systems, we uncover their significant carbon sequestration potential, observing distinct seasonal patterns influenced by temperature, humidity, and radiation. Notably, these forests exhibit robust carbon absorption, with potential implications for global carbon balance.
Colette L. Kelly, Nicole M. Travis, Pascale Anabelle Baya, Claudia Frey, Xin Sun, Bess B. Ward, and Karen L. Casciotti
Biogeosciences, 21, 3215–3238, https://doi.org/10.5194/bg-21-3215-2024, https://doi.org/10.5194/bg-21-3215-2024, 2024
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Nitrous oxide, a potent greenhouse gas, accumulates in regions of the ocean that are low in dissolved oxygen. We used a novel combination of chemical tracers to determine how nitrous oxide is produced in one of these regions, the eastern tropical North Pacific Ocean. Our experiments showed that the two most important sources of nitrous oxide under low-oxygen conditions are denitrification, an anaerobic process, and a novel “hybrid” process performed by ammonia-oxidizing archaea.
Hella van Asperen, Thorsten Warneke, Alessandro Carioca de Araújo, Bruce Forsberg, Sávio José Filgueiras Ferreira, Thomas Röckmann, Carina van der Veen, Sipko Bulthuis, Leonardo Ramos de Oliveira, Thiago de Lima Xavier, Jailson da Mata, Marta de Oliveira Sá, Paulo Ricardo Teixeira, Julie Andrews de França e Silva, Susan Trumbore, and Justus Notholt
Biogeosciences, 21, 3183–3199, https://doi.org/10.5194/bg-21-3183-2024, https://doi.org/10.5194/bg-21-3183-2024, 2024
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Carbon monoxide (CO) is regarded as an important indirect greenhouse gas. Soils can emit and take up CO, but, until now, uncertainty remains as to which process dominates in tropical rainforests. We present the first soil CO flux measurements from a tropical rainforest. Based on our observations, we report that tropical rainforest soils are a net source of CO. In addition, we show that valley streams and inundated areas are likely additional hot spots of CO in the ecosystem.
Yélognissè Agbohessou, Claire Delon, Manuela Grippa, Eric Mougin, Daouda Ngom, Espoir Koudjo Gaglo, Ousmane Ndiaye, Paulo Salgado, and Olivier Roupsard
Biogeosciences, 21, 2811–2837, https://doi.org/10.5194/bg-21-2811-2024, https://doi.org/10.5194/bg-21-2811-2024, 2024
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Emissions of greenhouse gases in the Sahel are not well represented because they are considered weak compared to the rest of the world. However, natural areas in the Sahel emit carbon dioxide and nitrous oxides, which need to be assessed because of extended surfaces. We propose an assessment of such emissions in Sahelian silvopastoral systems and of how they are influenced by environmental characteristics. These results are essential to inform climate change strategies in the region.
Merit van den Berg, Thomas M. Gremmen, Renske J. E. Vroom, Jacobus van Huissteden, Jim Boonman, Corine J. A. van Huissteden, Ype van der Velde, Alfons J. P. Smolders, and Bas P. van de Riet
Biogeosciences, 21, 2669–2690, https://doi.org/10.5194/bg-21-2669-2024, https://doi.org/10.5194/bg-21-2669-2024, 2024
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Drained peatlands emit 3 % of the global greenhouse gas emissions. Paludiculture is a way to reduce CO2 emissions while at the same time generating an income for landowners. The side effect is the potentially high methane emissions. We found very high methane emissions for broadleaf cattail compared with narrowleaf cattail and water fern. The rewetting was, however, effective to stop CO2 emissions for all species. The highest potential to reduce greenhouse gas emissions had narrowleaf cattail.
Thea H. Heimdal, Galen A. McKinley, Adrienne J. Sutton, Amanda R. Fay, and Lucas Gloege
Biogeosciences, 21, 2159–2176, https://doi.org/10.5194/bg-21-2159-2024, https://doi.org/10.5194/bg-21-2159-2024, 2024
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Measurements of ocean carbon are limited in time and space. Machine learning algorithms are therefore used to reconstruct ocean carbon where observations do not exist. Improving these reconstructions is important in order to accurately estimate how much carbon the ocean absorbs from the atmosphere. In this study, we find that a small addition of observations from the Southern Ocean, obtained by autonomous sampling platforms, could significantly improve the reconstructions.
Guilherme L. Torres Mendonça, Julia Pongratz, and Christian H. Reick
Biogeosciences, 21, 1923–1960, https://doi.org/10.5194/bg-21-1923-2024, https://doi.org/10.5194/bg-21-1923-2024, 2024
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We study the timescale dependence of airborne fraction and underlying feedbacks by a theory of the climate–carbon system. Using simulations we show the predictive power of this theory and find that (1) this fraction generally decreases for increasing timescales and (2) at all timescales the total feedback is negative and the model spread in a single feedback causes the spread in the airborne fraction. Our study indicates that those are properties of the system, independently of the scenario.
François Clayer, Jan Erik Thrane, Kuria Ndungu, Andrew King, Peter Dörsch, and Thomas Rohrlack
Biogeosciences, 21, 1903–1921, https://doi.org/10.5194/bg-21-1903-2024, https://doi.org/10.5194/bg-21-1903-2024, 2024
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Determination of dissolved greenhouse gas (GHG) in freshwater allows us to estimate GHG fluxes. Mercuric chloride (HgCl2) is used to preserve water samples prior to GHG analysis despite its environmental and health impacts and interferences with water chemistry in freshwater. Here, we tested the effects of HgCl2, two substitutes and storage time on GHG in water from two boreal lakes. Preservation with HgCl2 caused overestimation of CO2 concentration with consequences for GHG flux estimation.
Helena Rautakoski, Mika Korkiakoski, Jarmo Mäkelä, Markku Koskinen, Kari Minkkinen, Mika Aurela, Paavo Ojanen, and Annalea Lohila
Biogeosciences, 21, 1867–1886, https://doi.org/10.5194/bg-21-1867-2024, https://doi.org/10.5194/bg-21-1867-2024, 2024
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Current and future nitrous oxide (N2O) emissions are difficult to estimate due to their high variability in space and time. Several years of N2O fluxes from drained boreal peatland forest indicate high importance of summer precipitation, winter temperature, and snow conditions in controlling annual N2O emissions. The results indicate increasing year-to-year variation in N2O emissions in changing climate with more extreme seasonal weather conditions.
Matthias Koschorreck, Norbert Kamjunke, Uta Koedel, Michael Rode, Claudia Schuetze, and Ingeborg Bussmann
Biogeosciences, 21, 1613–1628, https://doi.org/10.5194/bg-21-1613-2024, https://doi.org/10.5194/bg-21-1613-2024, 2024
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We measured the emission of carbon dioxide (CO2) and methane (CH4) from different sites at the river Elbe in Germany over 3 days to find out what is more important for quantification: small-scale spatial variability or diurnal temporal variability. We found that CO2 emissions were very different between day and night, while CH4 emissions were more different between sites. Dried out river sediments contributed to CO2 emissions, while the side areas of the river were important CH4 sources.
Odysseas Sifounakis, Edwin Haas, Klaus Butterbach-Bahl, and Maria P. Papadopoulou
Biogeosciences, 21, 1563–1581, https://doi.org/10.5194/bg-21-1563-2024, https://doi.org/10.5194/bg-21-1563-2024, 2024
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We performed a full assessment of the carbon and nitrogen cycles of a cropland ecosystem. An uncertainty analysis and quantification of all carbon and nitrogen fluxes were deployed. The inventory simulations include greenhouse gas emissions of N2O, NH3 volatilization and NO3 leaching from arable land cultivation in Greece. The inventory also reports changes in soil organic carbon and nitrogen stocks in arable soils.
Nathaniel B. Weston, Cynthia Troy, Patrick J. Kearns, Jennifer L. Bowen, William Porubsky, Christelle Hyacinthe, Christof Meile, Philippe Van Cappellen, and Samantha B. Joye
EGUsphere, https://doi.org/10.5194/egusphere-2024-448, https://doi.org/10.5194/egusphere-2024-448, 2024
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Nitrous oxide (N2O) is a potent greenhouse and ozone depleting gas produced largely from microbial nitrogen cycling processes, and human activities have resulted in increases in atmospheric N2O. We investigate the role of physical and chemical disturbance to soils and sediments. We demonstrate that the disturbance increases N2O production, the microbial community adapts to disturbance over time, an initial disturbance appears to confer resilience to subsequent disturbance.
Sarah M. Ludwig, Luke Schiferl, Jacqueline Hung, Susan M. Natali, and Roisin Commane
Biogeosciences, 21, 1301–1321, https://doi.org/10.5194/bg-21-1301-2024, https://doi.org/10.5194/bg-21-1301-2024, 2024
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Landscapes are often assumed to be homogeneous when using eddy covariance fluxes, which can lead to biases when calculating carbon budgets. In this study we report eddy covariance carbon fluxes from heterogeneous tundra. We used the footprints of each flux observation to unmix the fluxes coming from components of the landscape. We identified and quantified hot spots of carbon emissions in the landscape. Accurately scaling with landscape heterogeneity yielded half as much regional carbon uptake.
Martti Honkanen, Mika Aurela, Juha Hatakka, Lumi Haraguchi, Sami Kielosto, Timo Mäkelä, Jukka Seppälä, Simo-Matti Siiriä, Ken Stenbäck, Juha-Pekka Tuovinen, Pasi Ylöstalo, and Lauri Laakso
EGUsphere, https://doi.org/10.5194/egusphere-2024-628, https://doi.org/10.5194/egusphere-2024-628, 2024
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We present the 5-year (2017–2021) data set of the air-sea CO2 flux measurements made in the Archipelago Sea, the Baltic Sea. The study site was found to act as a net source of CO2 with an average annual net air-sea CO2 exchange of 27.1 gC m-2 y-1, indicating that this marine system respires carbon originated elsewhere. The annual CO2 emission varied between 18.2 in 2018 and 39.2 gC m-2 y-1 in 2017. These two years differed greatly in terms of the algal blooms and the pCO2 drawdown.
Silvie Lainela, Erik Jacobs, Stella-Theresa Stoicescu, Gregor Rehder, and Urmas Lips
EGUsphere, https://doi.org/10.5194/egusphere-2024-598, https://doi.org/10.5194/egusphere-2024-598, 2024
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We evaluate the variability of carbon dioxide and methane in the surface layer of the north-eastern basins of the Baltic Sea in 2018. We show that the shallower coastal areas have considerably higher spatial variability and seasonal amplitude of surface layer pCO2 and cCH4 than measured in the Baltic Sea offshore areas. Despite this high variability, caused mostly by coastal physical processes, the average annual air-sea CO2 fluxes differed only marginally between the sub-basins.
Sigrid Trier Kjær, Sebastian Westermann, Nora Nedkvitne, and Peter Dörsch
EGUsphere, https://doi.org/10.5194/egusphere-2024-562, https://doi.org/10.5194/egusphere-2024-562, 2024
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Permafrost peatlands are thawing due to climate change, releasing large quantities of carbon that degrades upon thawing and is released as CO2, CH4, or dissolved organic carbon (DOC). We incubated thawed Norwegian permafrost peat plateaus and thermokarst pond sediment found next to permafrost for up to 350 days to measure carbon loss. CO2 production was largest initially, while CH4 production increased over time. The largest carbon loss was measured at the top of the peat plateau core as DOC.
Justine Trémeau, Beñat Olascoaga, Leif Backman, Esko Karvinen, Henriikka Vekuri, and Liisa Kulmala
Biogeosciences, 21, 949–972, https://doi.org/10.5194/bg-21-949-2024, https://doi.org/10.5194/bg-21-949-2024, 2024
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We studied urban lawns and meadows in the Helsinki metropolitan area, Finland. We found that meadows are more resistant to drought events but that they do not increase carbon sequestration compared with lawns. Moreover, the transformation from lawns to meadows did not demonstrate any negative climate effects in terms of greenhouse gas emissions. Even though social and economic aspects also steer urban development, these results can guide planning to consider carbon-smart options.
Ralf C. H. Aben, Daniel van de Craats, Jim Boonman, Stijn H. Peeters, Bart Vriend, Coline C. F. Boonman, Ype van der Velde, Gilles Erkens, and Merit van den Berg
EGUsphere, https://doi.org/10.5194/egusphere-2024-403, https://doi.org/10.5194/egusphere-2024-403, 2024
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Drained peatlands cause high CO2 emissions. Raising the groundwater table can lower emissions. We used automated flux chamber measurements on 12 sites for up to 4 years and found a linear association between annual water table depth and CO2 emission. We also found that the average amount of carbon above the water table better predicted annual CO2 emission than water table depth and that water infiltration systems—used to effectively raise the water table—can be used to mitigate CO2 emissions.
Guantao Chen, Edzo Veldkamp, Muhammad Damris, Bambang Irawan, Aiyen Tjoa, and Marife D. Corre
Biogeosciences, 21, 513–529, https://doi.org/10.5194/bg-21-513-2024, https://doi.org/10.5194/bg-21-513-2024, 2024
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We established an oil palm management experiment in a large-scale oil palm plantation in Jambi, Indonesia. We recorded oil palm fruit yield and measured soil CO2, N2O, and CH4 fluxes. After 4 years of treatment, compared with conventional fertilization with herbicide weeding, reduced fertilization with mechanical weeding did not reduce yield and soil greenhouse gas emissions, which highlights the legacy effects of over a decade of conventional management prior to the start of the experiment.
Elizabeth Gachibu Wangari, Ricky Mwangada Mwanake, Tobias Houska, David Kraus, Gretchen Maria Gettel, Ralf Kiese, Lutz Breuer, and Klaus Butterbach-Bahl
Biogeosciences, 20, 5029–5067, https://doi.org/10.5194/bg-20-5029-2023, https://doi.org/10.5194/bg-20-5029-2023, 2023
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Agricultural landscapes act as sinks or sources of the greenhouse gases (GHGs) CO2, CH4, or N2O. Various physicochemical and biological processes control the fluxes of these GHGs between ecosystems and the atmosphere. Therefore, fluxes depend on environmental conditions such as soil moisture, soil temperature, or soil parameters, which result in large spatial and temporal variations of GHG fluxes. Here, we describe an example of how this variation may be studied and analyzed.
Laurie C. Menviel, Paul Spence, Andrew E. Kiss, Matthew A. Chamberlain, Hakase Hayashida, Matthew H. England, and Darryn Waugh
Biogeosciences, 20, 4413–4431, https://doi.org/10.5194/bg-20-4413-2023, https://doi.org/10.5194/bg-20-4413-2023, 2023
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As the ocean absorbs 25% of the anthropogenic emissions of carbon, it is important to understand the impact of climate change on the flux of carbon between the ocean and the atmosphere. Here, we use a very high-resolution ocean, sea-ice, carbon cycle model to show that the capability of the Southern Ocean to uptake CO2 has decreased over the last 40 years due to a strengthening and poleward shift of the southern hemispheric westerlies. This trend is expected to continue over the coming century.
Petr Znachor, Jiří Nedoma, Vojtech Kolar, and Anna Matoušů
Biogeosciences, 20, 4273–4288, https://doi.org/10.5194/bg-20-4273-2023, https://doi.org/10.5194/bg-20-4273-2023, 2023
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We conducted intensive spatial sampling of the hypertrophic fishpond to better understand the spatial dynamics of methane fluxes and environmental heterogeneity in fishponds. The diffusive fluxes of methane accounted for only a minor fraction of the total fluxes and both varied pronouncedly within the pond and over the studied summer season. This could be explained only by the water depth. Wind substantially affected temperature, oxygen and chlorophyll a distribution in the pond.
Sofie Sjögersten, Martha Ledger, Matthias Siewert, Betsabé de la Barreda-Bautista, Andrew Sowter, David Gee, Giles Foody, and Doreen S. Boyd
Biogeosciences, 20, 4221–4239, https://doi.org/10.5194/bg-20-4221-2023, https://doi.org/10.5194/bg-20-4221-2023, 2023
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Permafrost thaw in Arctic regions is increasing methane emissions, but quantification is difficult given the large and remote areas impacted. We show that UAV data together with satellite data can be used to extrapolate emissions across the wider landscape as well as detect areas at risk of higher emissions. A transition of currently degrading areas to fen type vegetation can increase emission by several orders of magnitude, highlighting the importance of quantifying areas at risk.
Cole G. Brachmann, Tage Vowles, Riikka Rinnan, Mats P. Björkman, Anna Ekberg, and Robert G. Björk
Biogeosciences, 20, 4069–4086, https://doi.org/10.5194/bg-20-4069-2023, https://doi.org/10.5194/bg-20-4069-2023, 2023
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Herbivores change plant communities through grazing, altering the amount of CO2 and plant-specific chemicals (termed VOCs) emitted. We tested this effect by excluding herbivores and studying the CO2 and VOC emissions. Herbivores reduced CO2 emissions from a meadow community and altered VOC composition; however, community type had the strongest effect on the amount of CO2 and VOCs released. Herbivores can mediate greenhouse gas emissions, but the effect is marginal and community dependent.
Ole Lessmann, Jorge Encinas Fernández, Karla Martínez-Cruz, and Frank Peeters
Biogeosciences, 20, 4057–4068, https://doi.org/10.5194/bg-20-4057-2023, https://doi.org/10.5194/bg-20-4057-2023, 2023
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Based on a large dataset of seasonally resolved methane (CH4) pore water concentrations in a reservoir's sediment, we assess the significance of CH4 emissions due to reservoir flushing. In the studied reservoir, CH4 emissions caused by one flushing operation can represent 7 %–14 % of the annual CH4 emissions and depend on the timing of the flushing operation. In reservoirs with high sediment loadings, regular flushing may substantially contribute to the overall CH4 emissions.
Matti Räsänen, Risto Vesala, Petri Rönnholm, Laura Arppe, Petra Manninen, Markus Jylhä, Jouko Rikkinen, Petri Pellikka, and Janne Rinne
Biogeosciences, 20, 4029–4042, https://doi.org/10.5194/bg-20-4029-2023, https://doi.org/10.5194/bg-20-4029-2023, 2023
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Fungus-growing termites recycle large parts of dead plant material in African savannas and are significant sources of greenhouse gases. We measured CO2 and CH4 fluxes from their mounds and surrounding soils in open and closed habitats. The fluxes scale with mound volume. The results show that emissions from mounds of fungus-growing termites are more stable than those from other termites. The soil fluxes around the mound are affected by the termite colonies at up to 2 m distance from the mound.
Tim René de Groot, Anne Margriet Mol, Katherine Mesdag, Pierre Ramond, Rachel Ndhlovu, Julia Catherine Engelmann, Thomas Röckmann, and Helge Niemann
Biogeosciences, 20, 3857–3872, https://doi.org/10.5194/bg-20-3857-2023, https://doi.org/10.5194/bg-20-3857-2023, 2023
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This study investigates methane dynamics in the Wadden Sea. Our measurements revealed distinct variations triggered by seasonality and tidal forcing. The methane budget was higher in warmer seasons but surprisingly high in colder seasons. Methane dynamics were amplified during low tides, flushing the majority of methane into the North Sea or releasing it to the atmosphere. Methanotrophic activity was also elevated during low tide but mitigated only a small fraction of the methane efflux.
Frederic Thalasso, Brenda Riquelme, Andrés Gómez, Roy Mackenzie, Francisco Javier Aguirre, Jorge Hoyos-Santillan, Ricardo Rozzi, and Armando Sepulveda-Jauregui
Biogeosciences, 20, 3737–3749, https://doi.org/10.5194/bg-20-3737-2023, https://doi.org/10.5194/bg-20-3737-2023, 2023
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A robust skirt-chamber design to capture and quantify greenhouse gas emissions from peatlands is presented. Compared to standard methods, this design improves the spatial resolution of field studies in remote locations while minimizing intrusion.
Gesa Schulz, Tina Sanders, Yoana G. Voynova, Hermann W. Bange, and Kirstin Dähnke
Biogeosciences, 20, 3229–3247, https://doi.org/10.5194/bg-20-3229-2023, https://doi.org/10.5194/bg-20-3229-2023, 2023
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Nitrous oxide (N2O) is an important greenhouse gas. However, N2O emissions from estuaries underlie significant uncertainties due to limited data availability and high spatiotemporal variability. We found the Elbe Estuary (Germany) to be a year-round source of N2O, with the highest emissions in winter along with high nitrogen loads. However, in spring and summer, N2O emissions did not decrease alongside lower nitrogen loads because organic matter fueled in situ N2O production along the estuary.
Alex Mavrovic, Oliver Sonnentag, Juha Lemmetyinen, Jennifer L. Baltzer, Christophe Kinnard, and Alexandre Roy
Biogeosciences, 20, 2941–2970, https://doi.org/10.5194/bg-20-2941-2023, https://doi.org/10.5194/bg-20-2941-2023, 2023
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This review supports the integration of microwave spaceborne information into carbon cycle science for Arctic–boreal regions. The microwave data record spans multiple decades with frequent global observations of soil moisture and temperature, surface freeze–thaw cycles, vegetation water storage, snowpack properties, and land cover. This record holds substantial unexploited potential to better understand carbon cycle processes.
Zoé Rehder, Thomas Kleinen, Lars Kutzbach, Victor Stepanenko, Moritz Langer, and Victor Brovkin
Biogeosciences, 20, 2837–2855, https://doi.org/10.5194/bg-20-2837-2023, https://doi.org/10.5194/bg-20-2837-2023, 2023
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We use a new model to investigate how methane emissions from Arctic ponds change with warming. We find that emissions increase substantially. Under annual temperatures 5 °C above present temperatures, pond methane emissions are more than 3 times higher than now. Most of this increase is caused by an increase in plant productivity as plants provide the substrate microbes used to produce methane. We conclude that vegetation changes need to be included in predictions of pond methane emissions.
Julian Koch, Lars Elsgaard, Mogens H. Greve, Steen Gyldenkærne, Cecilie Hermansen, Gregor Levin, Shubiao Wu, and Simon Stisen
Biogeosciences, 20, 2387–2403, https://doi.org/10.5194/bg-20-2387-2023, https://doi.org/10.5194/bg-20-2387-2023, 2023
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Utilizing peatlands for agriculture leads to large emissions of greenhouse gases worldwide. The emissions are triggered by lowering the water table, which is a necessary step in order to make peatlands arable. Many countries aim at reducing their emissions by restoring peatlands, which can be achieved by stopping agricultural activities and thereby raising the water table. We estimate a total emission of 2.6 Mt CO2-eq for organic-rich peatlands in Denmark and a potential reduction of 77 %.
Mélissa Laurent, Matthias Fuchs, Tanja Herbst, Alexandra Runge, Susanne Liebner, and Claire C. Treat
Biogeosciences, 20, 2049–2064, https://doi.org/10.5194/bg-20-2049-2023, https://doi.org/10.5194/bg-20-2049-2023, 2023
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In this study we investigated the effect of different parameters (temperature, landscape position) on the production of greenhouse gases during a 1-year permafrost thaw experiment. For very similar carbon and nitrogen contents, our results show a strong heterogeneity in CH4 production, as well as in microbial abundance. According to our study, these differences are mainly due to the landscape position and the hydrological conditions established as a result of the topography.
Michael Moubarak, Seeta Sistla, Stefano Potter, Susan M. Natali, and Brendan M. Rogers
Biogeosciences, 20, 1537–1557, https://doi.org/10.5194/bg-20-1537-2023, https://doi.org/10.5194/bg-20-1537-2023, 2023
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Tundra wildfires are increasing in frequency and severity with climate change. We show using a combination of field measurements and computational modeling that tundra wildfires result in a positive feedback to climate change by emitting significant amounts of long-lived greenhouse gasses. With these effects, attention to tundra fires is necessary for mitigating climate change.
Hanna I. Campen, Damian L. Arévalo-Martínez, and Hermann W. Bange
Biogeosciences, 20, 1371–1379, https://doi.org/10.5194/bg-20-1371-2023, https://doi.org/10.5194/bg-20-1371-2023, 2023
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Carbon monoxide (CO) is a climate-relevant trace gas emitted from the ocean. However, oceanic CO cycling is understudied. Results from incubation experiments conducted in the Fram Strait (Arctic Ocean) indicated that (i) pH did not affect CO cycling and (ii) enhanced CO production and consumption were positively correlated with coloured dissolved organic matter and nitrate concentrations. This suggests microbial CO uptake to be the driving factor for CO cycling in the Arctic Ocean.
Yihong Zhu, Ruihua Liu, Huai Zhang, Shaoda Liu, Zhengfeng Zhang, Fei-Hai Yu, and Timothy G. Gregoire
Biogeosciences, 20, 1357–1370, https://doi.org/10.5194/bg-20-1357-2023, https://doi.org/10.5194/bg-20-1357-2023, 2023
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With global warming, the risk of flooding is rising, but the response of the carbon cycle of aquatic and associated riparian systems
to flooding is still unclear. Based on the data collected in the Lijiang, we found that flooding would lead to significant carbon emissions of fluvial areas and riparian areas during flooding, but carbon capture may happen after flooding. In the riparian areas, the surviving vegetation, especially clonal plants, played a vital role in this transformation.
Lauri Heiskanen, Juha-Pekka Tuovinen, Henriikka Vekuri, Aleksi Räsänen, Tarmo Virtanen, Sari Juutinen, Annalea Lohila, Juha Mikola, and Mika Aurela
Biogeosciences, 20, 545–572, https://doi.org/10.5194/bg-20-545-2023, https://doi.org/10.5194/bg-20-545-2023, 2023
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We measured and modelled the CO2 and CH4 fluxes of the terrestrial and aquatic ecosystems of the subarctic landscape for 2 years. The landscape was an annual CO2 sink and a CH4 source. The forest had the largest contribution to the landscape-level CO2 sink and the peatland to the CH4 emissions. The lakes released 24 % of the annual net C uptake of the landscape back to the atmosphere. The C fluxes were affected most by the rainy peak growing season of 2017 and the drought event in July 2018.
Artem G. Lim, Ivan V. Krickov, Sergey N. Vorobyev, Mikhail A. Korets, Sergey Kopysov, Liudmila S. Shirokova, Jan Karlsson, and Oleg S. Pokrovsky
Biogeosciences, 19, 5859–5877, https://doi.org/10.5194/bg-19-5859-2022, https://doi.org/10.5194/bg-19-5859-2022, 2022
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In order to quantify C transport and emission and main environmental factors controlling the C cycle in Siberian rivers, we investigated the largest tributary of the Ob River, the Ket River basin, by measuring spatial and seasonal variations in carbon CO2 and CH4 concentrations and emissions together with hydrochemical analyses. The obtained results are useful for large-scale modeling of C emission and export fluxes from permafrost-free boreal rivers of an underrepresented region of the world.
Robert J. Parker, Chris Wilson, Edward Comyn-Platt, Garry Hayman, Toby R. Marthews, A. Anthony Bloom, Mark F. Lunt, Nicola Gedney, Simon J. Dadson, Joe McNorton, Neil Humpage, Hartmut Boesch, Martyn P. Chipperfield, Paul I. Palmer, and Dai Yamazaki
Biogeosciences, 19, 5779–5805, https://doi.org/10.5194/bg-19-5779-2022, https://doi.org/10.5194/bg-19-5779-2022, 2022
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Wetlands are the largest natural source of methane, one of the most important climate gases. The JULES land surface model simulates these emissions. We use satellite data to evaluate how well JULES reproduces the methane seasonal cycle over different tropical wetlands. It performs well for most regions; however, it struggles for some African wetlands influenced heavily by river flooding. We explain the reasons for these deficiencies and highlight how future development will improve these areas.
Saúl Edgardo Martínez Castellón, José Henrique Cattanio, José Francisco Berrêdo, Marcelo Rollnic, Maria de Lourdes Ruivo, and Carlos Noriega
Biogeosciences, 19, 5483–5497, https://doi.org/10.5194/bg-19-5483-2022, https://doi.org/10.5194/bg-19-5483-2022, 2022
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We seek to understand the influence of climatic seasonality and microtopography on CO2 and CH4 fluxes in an Amazonian mangrove. Topography and seasonality had a contrasting influence when comparing the two gas fluxes: CO2 fluxes were greater in high topography in the dry period, and CH4 fluxes were greater in the rainy season in low topography. Only CO2 fluxes were correlated with soil organic matter, the proportion of carbon and nitrogen, and redox potential.
Matthias Koschorreck, Klaus Holger Knorr, and Lelaina Teichert
Biogeosciences, 19, 5221–5236, https://doi.org/10.5194/bg-19-5221-2022, https://doi.org/10.5194/bg-19-5221-2022, 2022
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At low water levels, parts of the bottom of rivers fall dry. These beaches or mudflats emit the greenhouse gas carbon dioxide (CO2) to the atmosphere. We found that those emissions are caused by microbial reactions in the sediment and that they change with time. Emissions were influenced by many factors like temperature, water level, rain, plants, and light.
Wantong Zhang, Zhengyi Hu, Joachim Audet, Thomas A. Davidson, Enze Kang, Xiaoming Kang, Yong Li, Xiaodong Zhang, and Jinzhi Wang
Biogeosciences, 19, 5187–5197, https://doi.org/10.5194/bg-19-5187-2022, https://doi.org/10.5194/bg-19-5187-2022, 2022
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This work focused on the CH4 and N2O emissions from alpine peatlands in response to the interactive effects of altered water table levels and increased nitrogen deposition. Across the 2-year mesocosm experiment, nitrogen deposition showed nonlinear effects on CH4 emissions and linear effects on N2O emissions, and these N effects were associated with the water table levels. Our results imply the future scenario of strengthened CH4 and N2O emissions from an alpine peatland.
Karel Castro-Morales, Anna Canning, Sophie Arzberger, Will A. Overholt, Kirsten Küsel, Olaf Kolle, Mathias Göckede, Nikita Zimov, and Arne Körtzinger
Biogeosciences, 19, 5059–5077, https://doi.org/10.5194/bg-19-5059-2022, https://doi.org/10.5194/bg-19-5059-2022, 2022
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Permafrost thaw releases methane that can be emitted into the atmosphere or transported by Arctic rivers. Methane measurements are lacking in large Arctic river regions. In the Kolyma River (northeast Siberia), we measured dissolved methane to map its distribution with great spatial detail. The river’s edge and river junctions had the highest methane concentrations compared to other river areas. Microbial communities in the river showed that the river’s methane likely is from the adjacent land.
Sonja Gindorf, Hermann W. Bange, Dennis Booge, and Annette Kock
Biogeosciences, 19, 4993–5006, https://doi.org/10.5194/bg-19-4993-2022, https://doi.org/10.5194/bg-19-4993-2022, 2022
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Methane is a climate-relevant greenhouse gas which is emitted to the atmosphere from coastal areas such as the Baltic Sea. We measured the methane concentration in the water column of the western Kiel Bight. Methane concentrations were higher in September than in June. We found no relationship between the 2018 European heatwave and methane concentrations. Our results show that the methane distribution in the water column is strongly affected by temporal and spatial variabilities.
Margaret Capooci and Rodrigo Vargas
Biogeosciences, 19, 4655–4670, https://doi.org/10.5194/bg-19-4655-2022, https://doi.org/10.5194/bg-19-4655-2022, 2022
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Tidal salt marsh soil emits greenhouse gases, as well as sulfur-based gases, which play roles in global climate but are not well studied as they are difficult to measure. Traditional methods of measuring these gases worked relatively well for carbon dioxide, but less so for methane, nitrous oxide, carbon disulfide, and dimethylsulfide. High variability of trace gases complicates the ability to accurately calculate gas budgets and new approaches are needed for monitoring protocols.
Janne Rinne, Patryk Łakomiec, Patrik Vestin, Joel D. White, Per Weslien, Julia Kelly, Natascha Kljun, Lena Ström, and Leif Klemedtsson
Biogeosciences, 19, 4331–4349, https://doi.org/10.5194/bg-19-4331-2022, https://doi.org/10.5194/bg-19-4331-2022, 2022
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The study uses the stable isotope 13C of carbon in methane to investigate the origins of spatial and temporal variation in methane emitted by a temperate wetland ecosystem. The results indicate that methane production is more important for spatial variation than methane consumption by micro-organisms. Temporal variation on a seasonal timescale is most likely affected by more than one driver simultaneously.
Kukka-Maaria Kohonen, Roderick Dewar, Gianluca Tramontana, Aleksanteri Mauranen, Pasi Kolari, Linda M. J. Kooijmans, Dario Papale, Timo Vesala, and Ivan Mammarella
Biogeosciences, 19, 4067–4088, https://doi.org/10.5194/bg-19-4067-2022, https://doi.org/10.5194/bg-19-4067-2022, 2022
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Four different methods for quantifying photosynthesis (GPP) at ecosystem scale were tested, of which two are based on carbon dioxide (CO2) and two on carbonyl sulfide (COS) flux measurements. CO2-based methods are traditional partitioning, and a new method uses machine learning. We introduce a novel method for calculating GPP from COS fluxes, with potentially better applicability than the former methods. Both COS-based methods gave on average higher GPP estimates than the CO2-based estimates.
Lutz Beckebanze, Benjamin R. K. Runkle, Josefine Walz, Christian Wille, David Holl, Manuel Helbig, Julia Boike, Torsten Sachs, and Lars Kutzbach
Biogeosciences, 19, 3863–3876, https://doi.org/10.5194/bg-19-3863-2022, https://doi.org/10.5194/bg-19-3863-2022, 2022
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In this study, we present observations of lateral and vertical carbon fluxes from a permafrost-affected study site in the Russian Arctic. From this dataset we estimate the net ecosystem carbon balance for this study site. We show that lateral carbon export has a low impact on the net ecosystem carbon balance during the complete study period (3 months). Nevertheless, our results also show that lateral carbon export can exceed vertical carbon uptake at the beginning of the growing season.
Shahar Baram, Asher Bar-Tal, Alon Gal, Shmulik P. Friedman, and David Russo
Biogeosciences, 19, 3699–3711, https://doi.org/10.5194/bg-19-3699-2022, https://doi.org/10.5194/bg-19-3699-2022, 2022
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Static chambers are the most common tool used to measure greenhouse gas (GHG) fluxes. We tested the impact of such chambers on nitrous oxide emissions in drip irrigation. Field measurements and 3-D simulations show that the chamber base drastically affects the water and nutrient distribution in the soil and hence the measured GHG fluxes. A nomogram is suggested to determine the optimal diameter of a cylindrical chamber that ensures minimal disturbance.
Cited articles
Alldredge, A. L. and Cohen, Y.: Can microscale chemical patches persist in the sea?, Microelectrode study of marine snow, fecal pellets, Science, 235, 689–691, 1987.
Andersson, K. K. and Hooper, A. B.: O2 and H2O are each sources of one O in \chem{NO_2^-} produced from NH3 by Nitrosomonas: 15N-NMR evidence, FEBS Lett., 164, 236–240, 1983.
Andersson, K. K., Philson, S. B., and Hooper, A. B.: 18O isotope shift in 15N NMR analysis of biological N-oxidations: H2O-\chem{NO_2^-} exchange in the ammonia-oxidizing bacterium Nitrosomonas, P. Natl. Acad. Sci., 79, 5871–5875, 1982.
Arp, D. J., Chain, P. S. G., and Klotz, M. G.: The impact of genome analyses on our understanding of ammonia-oxidizing bacteria, Annu. Rev. Microbiol., 61, 503–528, 2007.
Bard, Y.: Nonlinear parameter estimation, Academic Press, New York, 1974.
Beaumont, H. J. E., Hommes, N. G., Sayavedra-Soto, L. A., Arp, D. J., Arciero, D. M., Hooper, A. B., Westerhoff, H. V., and van Spanning, R. J. M.: Nitrite reductase of Nitrosomonas europaea is not essential for production of gaseous nitrogen oxides and confers tolerance to nitrite, J. Bacteriol., 184, 2557–2560, 2002.
Beaumont, H. J. E., Lens, S., Reijnders, W. N. M., Westerhoff, H. V., and van Spanning, R. J. M.: Expression of nitrite reductase in Nitrosomonas europaea involves NsrR, a novel nitrite-sensitive transcription repressor, Mol. Microbiol., 54, 148–158, 2004.
Beman, M. J., Arrigo, K. R., and Matson, P. A.: Agricultural runoff fuels large phytoplankton blooms in vulnerable areas of the ocean, Nature, 434, 211–214, 2005.
Bender, M. L.: The δ18O of dissoved O2 in seawater: a unique tracer of circulation and respiration in the deep sea, J. Geophys. Res.-Oceans, 95, 22243–22252, 1990.
Buchwald, C. and Casciotti, K. L.: Oxygen isotopic fractionation and exchange during bacterial nitrite oxidation, Limnol. Oceanogr., 55, 1064–1074, 2010.
Cantera, J. J. and Stein, L. Y.: Molecular diversity of nitrite reductase genes (nirK) in nitrifying bacteria, Environmental Microbiology, 9, 765–776, 2007.
Carlucci, A. F. and McNally, P. M.: Nitrification by marine bacteria in low concentrations of substrate and oxygen, Limnol. Oceanogr., 14, 736–739, 1969.
Casciotti, K. L. and Ward, B. B.: Dissimilatory nitrite reductase genes from autotrophic ammonia-oxidizing bacteria, Appl. Environ. Microb., 67, 2213–2221, 2001.
Casciotti, K. L. and Ward, B. B.: Phylogenetic analysis of nitric oxide reductase gene homologues from aerobic ammonia-oxidizing bacteria, FEMS Microbiol. Ecol., 52, 197–205, 2005.
Casciotti, K. L., Sigman, D. M., Hastings, M. G., Bohlke, J. K., and Hilkert, A.: Measurements of the oxygen isotopic composition of nitrate in seawater and freshwater using the denitrifier method, Anal. Chem., 74, 4905–4912, 2002.
Casciotti, K. L., Bohlke, J. K., McIlvin, M., Mroczkowski, S. J., and Hannon, J. E.: Oxygen isotopes in nitrite: analysis, calibration, and equilibration, Anal. Chem., 79, 2427–2436, 2007.
Casciotti, K. L., McIlvin, M., and Buchwald, C.: Oxygen isotopic exchange and fractionation during bacterial ammonia oxidation, Limnol.Oceanogr., 55, 753–762, 2010.
Charpentier, J., Farias, L., Yoshida, N., Boontanon, N., and Raimbault, P.: Nitrous oxide distribution and its origin in the central and eastern South Pacific Subtropical Gyre, Biogeosciences, 4, 729–741, 2007.
Cline, J. D., Wisegarver, D. P., and Kelly-Hansen, K.: Nitrous oxide and vertical mixing in the equatorial Pacific during the 1982–1983 El Ni{ñ}o, Deep-Sea Res., 34, 857–873, 1987.
Codispoti, L. A. and Christensen, J. P.: Nitrification, denitrification and nitrous oxide cycling in the eastern tropic south Pacific Ocean, Mar. Chem., 16, 277–300, 1985.
Codispoti, L. A., Brandes, J. A., Christensen, J. P., Devol, A. H., Naqvi, S. W. A., Paerl, H. W., and Yoshinari, T.: The oceanic fixed nitrogen and nitrous oxide budgets: moving targets as we enter the anthropocene?, Sci. Mar., 65, 85–105, 2001.
Cohen, Y. and Gordon, L. I.: Nitrous oxide in the oxygen minimum of the eastern tropical North Pacific: evidence for its consumption during denitrification and possible mechanisms for its production, Deep-Sea Res., 25, 509–524, 1978.
Cohen, Y. and Gordon, L. I.: Nitrous oxide production in the ocean, J. Geophys. Res., 84, 347–353, 1979.
Draper, N. R. and Smith, H.: Applied regression analysis, Wiley, New York, 2, 1981.
Dua, R. D., Bhandari, B., and Nicholas, D. J. D.: Stable isotope studies on the oxidation of ammonia to hydroxylamine by Nitrosomonas europaea, FEBS Lett., 106, 401–404, 1979.
Elkins, J. W., Wofsy, S., McElroy, M. B., Kolb, C. E., and Kaplan, W. A.: Aquatic sources and sinks for nitrous oxide, Nature, 275, 602–606, 1978.
Fuhrman, J. A. and Capone, D. G.: Possible biogeochemical consequences of ocean fertilization, Limnol. Oceanogr., 36, 1951–1959, 1991.
Fulweiler, R. W., Nixon, S. W., Buckley, B. A., and Granger, S. L.: Reversal of the net dinitrogen gas flux in coastal marine sediments, Nature, 448, 180–181, 2007.
Galloway, J. N., Schlesinger, W. H., Levy II, H., Michaels, A., and Schnoor, J. L.: Nitrogen fixation: anthropogenic enhancement-environmental response, Global Biogeochem. Cy., 9, 235–252, 1995.
Goreau, T. J., Kaplan, W. A., Wofsy, S. C., McElroy, M. B., Valois, F. W., and Watson, S. W.: Production of \chem{NO_2^-} and N2O by nitrifying bacteria at reduced concentrations of oxygen, Appl. Environ. Microb., 40, 526–532, 1980.
Hallam, S. J., Mincer, T. J., Schleper, C., Preston, C. M., Roberts, K., Richardson, P. M., and DeLong, E. F.: Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota, PLoS Biol., 4, 521–536, 2006.
Hashimoto, L. K., Kaplan, W. A., Wofsy, S. C., and McElroy, M. B.: Transformations of fixed nitrogen and N2O in the Cariaco Trench, Deep-Sea Res., 30, 575–590, 1983.
Helder, W. and de Vries, R. T. P.: Estuarine nitrite maxima and nitrifying bacteria (EMS-Dollard estuary), Neth J. Sea Res., 17, 1–18, 1983.
Hollocher, T. C., Tate, M. E., and Nicholas, D. J. D.: Oxidation of ammonia by Nitrosomonas europaea, J. Biol. Chem., 256, 10834–10836, 1981.
Hooper, A. B. and Terry, K. R.: Hydroxylamine oxidoreductase of Nitrosomonas production of nitric oxide from hydroxylamine, BBA.-Bioenergetics, 571, 12–20, 1979.
Ignarro, L. J., Fukuto, J. M., Griscavage, J. M., and Rogers, N. E.: Oxidation of nitric oxide in aqueous solution to nitrite but not nitrate: comparison with enzymatically formed nitric oxide from L-arginine, P. Natl. Acad. Sci., 90, 8103–8107, 1993.
IPCC: Climate Change 2007: The Physical Science Basis, Cambridge University Press, New York, NY, USA, 2007.
Jin, X. and Gruber, N.: Offsetting the radiative benefit of ocean iron fertilization by enhancing N2O emissions, Geophys. Res. Lett., 30, 1–4, 2003.
Jorgensen, K. S., Jensen, H. B., and Sorensen, J.: Nitrous oxide production from nitrification and denitrification in marine sediment at low oxygen concentrations, Can. J. Microbiol., 30, 1073–1078, 1984.
Knowles, R., Lean, D. R. S., and Chan, Y. K.: Nitrous oxide concentrations in lakes: variations with depth and time, Limnol. Oceanogr., 26, 855–866, 1981.
Koba, K., Osaka, K., Tobari, Y., Toyoda, S., Ohte, N., Katsuyama, M., Suzuki, N., Itoh, M., Yamagishi, H., Kawasaki, M., Kim, S. J., Yoshida, N., and Nakajima, T.: Biogeochemistry of nitrous oxide in groundwater in a forested ecosystem elucidated by nitrous oxide isotopomer measurements, Geochim. Cosmochim. Ac., 73, 3115–3133, 2009.
Kool, D. M., Wrage, N., Oenema, O., Dolfing, J., and van Groenigen, J. W.: Oxygen exchange between (de)nitrification intermediates and H2O and its implications for source determination of \chem{NO_3^-} and N2O: a review, Rapid Commun. Mass Sp., 21, 3569–3578, 2007.
Kroopnick, P. and Craig, H.: Oxygen isotope fractionation in dissolved oxygen in the deep sea, Earth Planet. Sc. Lett., 32, 375–388, 1976.
Law, C. S. and Ling, R. D.: Nitrous oxide flux and response to increased iron availability in the Antarctic Circumpolar Current, Deep-Sea Res. II, 48, 2509–2527, 2001.
Levine, N. M., Bender, M. L., and Doney, S. C.: The δ18O of dissoved O2 as a tracer of mixing and respiration in the mesopelagic ocean, Global Biogeochem. Cy., 23, GB1006, https://doi.org/10.1029/2007GB003162, 2009.
Lewis, R. S. and Deen, W. M.: Kinetics of the reaction of nitric oxide with oxygen in aqueous solutions, Chem. Res. Toxicol., 7, 568–574, 1994.
Lipschultz, F., Zafiriou, O. C., Wofsy, S. C., McElroy, M. B., Valois, F. W., and Watson, S. W.: Production of NO and N2O by soil nitrifying bacteria, Nature, 294, 641–643, 1981.
Mariotti, A., Germon, J. C., Hubert, P., Kaiser, P., Letolle, R., Tardieux, A., and Tardieux, P.: Experimental determination of nitrogen kinetic isotope fractionation: some principles; illustration for the denitrification and nitrification processes, Plant Soil, 62, 413–430, 1981.
McIlvin, M. M. and Altabet, M.: Chemical conversion of nitrate and nitrite to nitrous oxide for nitrogen and oxygen isotopic analysis in freshwater and seawater, Anal. Chem., 77, 5589–5595, 2005.
McIlvin, M. M. and Casciotti, K. L.: Automated stable isotopic analysis of dissolved nitrous oxide at natural abundance levels, Limnol. Oceanogr.- Meth., 8, 54–66, 2010.
Naqvi, S. W. A., Jayakumar, D. A., Narvekar, P. V., Naik, H., Sarma, V. V. S. S., D'Souza, W., Joseph, S., and George, M. D.: Increased marine production of N2O due to intensifying anoxia on the Indian continental shelf, Nature, 408, 346–349, 2000.
Nevison, C., Butler, J. H., and Elkins, J. W.: Global distribution of N2O and the ΔN2O-AOU yield in the subsurface ocean, Global Biogeochem. Cy., 17, GB1119, https://doi.org/10.1029/2003GB002068, 2003.
Norton, J. M., Klotz, M. G., Stein, L. Y., Arp, D. J., Bottomley, P. J., Chain, P. S. G., Hauser, L. J., Land, Miriam, L., Larimer, F. W., Shin, M. W., and Starkenburg, S. R.: Complete genome sequence of Nitrosospira multiformis, an ammonia-oxidizing bacterium from the soil environment, Appl. Environ. Microbiol., 74, 3559–3572, 2008.
Ostrom, N. E., Russ, M. E., Popp, B., Rust, T. M., and Karl, D. M.: Mechanisms of nitrous oxide production in the subtropical North Pacific based on determinations of the isotopic abundances of nitrous oxide and di-oxygen, Chemosphere-Global Change Science, 2, 281–290, 2000.
Ostrom, N. E., Pitt, A., Ostrom, P. H., Grandy, A. S., Huizinga, K. M., and Robertson, G. P.: Isotopologue effects during N2O reduction in soils and in pure cultures of denitrifiers, J. Geophys. Res., 112, 1–12, 2007.
Pai, S.-C. and Yang, C.-C.: Formation kinetics of the pink azo dye in the determination of nitrite in natural waters, Anal. Chim. Acta, 232, 345–349, 1990.
Payne, W. J., Riley, P. S., and Cox, C. D. J.: Separate nitrite, nitric oxide, and nitrous oxide reducing fractions from Pseudomonas perfectomarinus, J. Bacteriol., 106, 356–361, 1971.
Popp, B. N., Westley, M. B., Toyoda, S., Miwa, T., Dore, J. E., Yoshida, N., Rust, T. M., Sansone, F. J., Russ, M. E., Ostrom, N. E., and Ostrom, P. H.: Nitrogen and oxygen isotopomeric constraints on the origins and sea-to-air flux of N2O in the oligotrophic subtropical North Pacific gyre, Global Biogeochem. Cy., 16, GB1064, https://doi.org/10.1029/2001GB001806, 2002.
Poth, M. and Focht, D.: 15N kinetic analysis of N2O production by Nitrosomonas europaea: an examination of nitrifier denitrification, Appl. Environm. Microbr., 49, 1134–1141, 1985.
Remde, A. and Conrad, R.: Production of nitric oxide in Nitrosomonas europaea by reduction of nitrite, Arch. Microbiol., 154, 187–191, 1990.
Ritchie, G. A. F. and Nicholas, D. J. D.: Identification of the sources of nitrous oxide produced by oxidative and reductive processes in Nitrosomonas europaea, Biochemi. J., 126, 1181–1191, 1972.
Rodionov, D. A., Dubchak, I. L., Arkin, A. P., Alm, E. J., and Gelfand, M. S.: Dissimilatory metabolism of nitrogen oxides in bacteria: comparative reconstruction of transcriptional networks, PLoS Computational Biology, 1, 415–431, 2005.
Schmidt, H.-L., Werner, R. A., Yoshida, N., and Well, R.: Is the isotopic composition of nitrous oxide an indicator for its origin from nitrification or denitrification? A theoretical approach from referred data and microbiological and enzyme kinetic aspects, Rapid Commun. Mass Sp., 18, 2036–2040, 2004.
Shaw, L. J., Nicol, G. W., Smith, Z., Fear, J., Prosser, J., and Baggs, E. M.: Nitrosospira spp. can produce nitrous oxide via a nitrifier denitrification pathway, Environ. Microbiol., 8, 214–222, 2006.
Solorzano, L.: Determination of ammonia in natural waters by the phenolhypochlorite method, Limnol. Oceanogr., 14, 799–801, 1969.
Suntharalingam, P. and Sarmiento, J. L.: Factors governing the oceanic nitrous oxide distribution: simulations with an ocean general circulation model, Global Biogeochem. Cy., 14, 429–454, 2000.
Sutka, R. L., Ostrom, N. E., Ostrom, P. H., Gandhi, H., and Breznak, J. A.: Nitrogen isotopomer site preference of N2O produced by Nitrosomonas europaea and Methylococcus capsulatus Bath, Rapid Commun. Mass Sp., 17, 738–745, 2003.
Sutka, R. L., Ostrom, N. E., Ostrom, P. H., Gandhi, H., and Breznak, J. A.: Nitrogen isotopomer site preference of N2O produced by Nitrosomonas europaea and Methylococcus capsulatus Bath, Rapid Commun. Mass Sp., 18, 1411–1412, 2004.
Sutka, R. L., Ostrom, N. E., Ostrom, P. H., Breznak, J. A., Gandhi, H., Pitt, A. J., and Li, F.: Distinguishing nitrous oxide production from nitrification and denitrification on the basis of isotopomer abundances, Appl. Environ. Microbr., 72, 638–644, 2006.
Toyoda, S. and Yoshida, N.: Determination of nitrogen isotopomers of nitrous oxide on a modified isotope ratio mass spectrometer, Anal. Chem., 71, 4711–4718, 1999.
Toyoda, S., Yoshida, N., Miwa, T., Matsui, Y., Yamagishi, H., and Tsunogai, U.: Production mechanism and global budget of N2O inferred from its isotopomers in the western North Pacific, Geophys. Res. Lett., 29(3), 1037, https://doi.org/10.1029/2001GL014311., 2002.
Toyoda, S., Mutobe, H., Yamagishi, H., Yoshida, N., and Tanji, Y.: Fractionation of N2O isotopomers during production by denitrifier, Soil Biol. Biochem., 37, 1535–1545, 2005.
Treusch, A. H., Leininger, S., Kletzin, A., Schuster, S. C., Klenk, H.-P., and Schleper, C.: Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling, Environ. Microbiol., 7, 1985–1995, 2005.
Walker, C. B., de la Torre, J. R., Klotz, M. G., Pinel, N., Arp, D. J., Brochier-Armanet, C., Chain, P. S. G., Chan, P. P., Gollabgir, A., and Hemp, J.: Nitrosopumilus maritimus genome reveals unique mechanisms for nitrification and autotrophy in globally distributed marine crenarchaea, Proceedings of the National Academy of Science, 107, 8818–8823, 2010.
Ward, B. B., Olson, R. J., and Perry, M. J.: Microbial nitrification rates in the primary nitrite maximum off southern California, Deep-Sea Res., 29, 247–255, 1982.
Watson, S. W.: Characteristics of a marine nitrifying bacterium, Nitrosocystis oceanus sp. nov., Limnol. Oceanogr., 10, R274–R289, 1965.
Westley, M. B., Popp, B. N., and Rust, T. M.: The calibration of the intramolecular nitrogen isotope distribution in nitrous oxide measured by isotope ratio mass spectrometry, Rapid Commun. Mass Sp., 21, 391–405, 2007.
Wrage, N., van Groenigen, J. W., Oenema, O., and Baggs, E. M.: A novel dual-isotope labelling method for distinguishing between soil sources of N2O, Rapid Commun. Mass Sp., 19, 3298–3306, 2005.
Yoshida, N.: 15N-depleted N2O as a product of nitrification, Nature, 335, 528–529, 1988.
Yoshida, N. and Toyoda, S.: Constraining the atmospheric N2O budget from intramolecular site preference in N2O isotopomers, Nature, 405, 330–334, 2000.
Yoshida, N., Morimoto, H., Hirano, M., Koike, I., Matsuo, S., Wada, Eitaro adn Saino, T., and Hattori, A.: Nitrification rates and 15N abundances of N2O and \chem{NO_3^-} in the western North Pacific, Nature, 342, 895–897, 1989.
Yoshinari, T.: Nitrous oxide in the sea, Mar. Chem., 4, 189–202, 1976.
Yung, Y. L. and Miller, C. E.: Isotopic fractionation of stratospheric nitrous oxide, Science, 278, 1778–1780, 1997.
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